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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017683 Staphylococcus aureus strain CFSAN007850 plasmid pCFSAN007850, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP017682 Staphylococcus aureus strain CFSAN007850 chromosome, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 10 3 8 2

Results visualization

1. NZ_CP017682
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_1 393079-393180 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_2 789073-789151 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_3 794528-794855 Unclear NA
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_4 801900-801979 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_5 838029-838110 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_6 1625971-1626055 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_7 2053846-2053927 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_8 2182568-2182648 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_9 2194889-2194974 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017682_10 2302931-2303011 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017682_2 2.1|789097|31|NZ_CP017682|CRISPRCasFinder 789097-789127 31 NZ_CP017682.1 258196-258226 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 134927-134948 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 134985-135006 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 258121-258142 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 258231-258252 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 622937-622958 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 747445-747466 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 838102-838123 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 1356241-1356262 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 1626047-1626068 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 1640581-1640602 0 1.0
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 1952633-1952654 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 134927-134948 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 134985-135006 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 258121-258142 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 258231-258252 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 622937-622958 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 747445-747466 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 838102-838123 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 1356241-1356262 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 1626047-1626068 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 1640581-1640602 0 1.0
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 1952633-1952654 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 134927-134948 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 134985-135006 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 258121-258142 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 258231-258252 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 622937-622958 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 747445-747466 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 838102-838123 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 1356241-1356262 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 1626047-1626068 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 1640581-1640602 0 1.0
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 1952633-1952654 0 1.0
NZ_CP017682_4 4.1|801924|32|NZ_CP017682|CRISPRCasFinder 801924-801955 32 NZ_CP017682.1 36448-36479 0 1.0
NZ_CP017682_4 4.1|801924|32|NZ_CP017682|CRISPRCasFinder 801924-801955 32 NZ_CP017682.1 838359-838390 0 1.0
NZ_CP017682_4 4.1|801924|32|NZ_CP017682|CRISPRCasFinder 801924-801955 32 NZ_CP017682.1 1640640-1640671 0 1.0
NZ_CP017682_4 4.1|801924|32|NZ_CP017682|CRISPRCasFinder 801924-801955 32 NZ_CP017682.1 2077921-2077952 0 1.0
NZ_CP017682_4 4.1|801924|32|NZ_CP017682|CRISPRCasFinder 801924-801955 32 NZ_CP017682.1 2467691-2467722 0 1.0
NZ_CP017682_7 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder 2053870-2053903 34 NZ_CP017682.1 789072-789105 0 1.0
NZ_CP017682_7 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder 2053870-2053903 34 NZ_CP017682.1 1144540-1144573 0 1.0
NZ_CP017682_2 2.1|789097|31|NZ_CP017682|CRISPRCasFinder 789097-789127 31 NZ_CP017682.1 258141-258171 1 0.968
NZ_CP017682_2 2.1|789097|31|NZ_CP017682|CRISPRCasFinder 789097-789127 31 NZ_CP017682.1 1660334-1660364 1 0.968
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 951554-951575 1 0.955
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 1660308-1660329 1 0.955
NZ_CP017682_3 3.1|794564|22|NZ_CP017682|CRT 794564-794585 22 NZ_CP017682.1 1660422-1660443 1 0.955
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 951554-951575 1 0.955
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 1660308-1660329 1 0.955
NZ_CP017682_3 3.2|794622|22|NZ_CP017682|CRT 794622-794643 22 NZ_CP017682.1 1660422-1660443 1 0.955
NZ_CP017682_3 3.3|794680|23|NZ_CP017682|CRT 794680-794702 23 NZ_CP017682.1 135043-135065 1 0.957
NZ_CP017682_3 3.3|794680|23|NZ_CP017682|CRT 794680-794702 23 NZ_CP017682.1 1952691-1952713 1 0.957
NZ_CP017682_3 3.3|794680|23|NZ_CP017682|CRT 794680-794702 23 NZ_CP017682.1 2292102-2292124 1 0.957
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 951554-951575 1 0.955
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 1660308-1660329 1 0.955
NZ_CP017682_3 3.4|794739|22|NZ_CP017682|CRT 794739-794760 22 NZ_CP017682.1 1660422-1660443 1 0.955
NZ_CP017682_3 3.5|794797|23|NZ_CP017682|CRT 794797-794819 23 NZ_CP017682.1 135043-135065 1 0.957
NZ_CP017682_3 3.5|794797|23|NZ_CP017682|CRT 794797-794819 23 NZ_CP017682.1 1952691-1952713 1 0.957
NZ_CP017682_3 3.5|794797|23|NZ_CP017682|CRT 794797-794819 23 NZ_CP017682.1 2292102-2292124 1 0.957
NZ_CP017682_6 6.1|1625997|33|NZ_CP017682|CRISPRCasFinder 1625997-1626029 33 NZ_CP017682.1 135024-135056 1 0.97
NZ_CP017682_7 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder 2053870-2053903 34 NZ_CP017682.1 1747392-1747425 1 0.971
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 801874-801904 1 0.968
NZ_CP017682_3 3.3|794680|23|NZ_CP017682|CRT 794680-794702 23 NZ_CP017682.1 1444562-1444584 2 0.913
NZ_CP017682_3 3.3|794680|23|NZ_CP017682|CRT 794680-794702 23 NZ_CP017682.1 2053927-2053949 2 0.913
NZ_CP017682_3 3.5|794797|23|NZ_CP017682|CRT 794797-794819 23 NZ_CP017682.1 1444562-1444584 2 0.913
NZ_CP017682_3 3.5|794797|23|NZ_CP017682|CRT 794797-794819 23 NZ_CP017682.1 2053927-2053949 2 0.913
NZ_CP017682_7 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder 2053870-2053903 34 NZ_CP017682.1 1360597-1360630 2 0.941
NZ_CP017682_7 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder 2053870-2053903 34 NZ_CP017682.1 2744913-2744946 2 0.941
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 36454-36484 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 334529-334559 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 622992-623022 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 838365-838395 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 1047550-1047580 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 1150141-1150171 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 1444615-1444645 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 1640635-1640665 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 1951285-1951315 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 2292155-2292185 2 0.935
NZ_CP017682_10 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder 2302956-2302986 31 NZ_CP017682.1 2467697-2467727 2 0.935

1. spacer 2.1|789097|31|NZ_CP017682|CRISPRCasFinder matches to position: 258196-258226, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

2. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 134927-134948, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 134985-135006, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 258121-258142, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 258231-258252, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 622937-622958, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 747445-747466, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 838102-838123, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 1356241-1356262, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 1626047-1626068, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 1640581-1640602, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 1952633-1952654, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 134927-134948, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 134985-135006, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 258121-258142, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 258231-258252, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 622937-622958, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 747445-747466, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 838102-838123, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 1356241-1356262, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 1626047-1626068, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

22. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 1640581-1640602, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

23. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 1952633-1952654, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

24. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 134927-134948, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

25. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 134985-135006, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

26. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 258121-258142, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

27. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 258231-258252, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

28. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 622937-622958, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

29. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 747445-747466, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

30. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 838102-838123, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

31. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 1356241-1356262, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

32. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 1626047-1626068, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

33. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 1640581-1640602, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

34. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 1952633-1952654, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

35. spacer 4.1|801924|32|NZ_CP017682|CRISPRCasFinder matches to position: 36448-36479, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

36. spacer 4.1|801924|32|NZ_CP017682|CRISPRCasFinder matches to position: 838359-838390, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

37. spacer 4.1|801924|32|NZ_CP017682|CRISPRCasFinder matches to position: 1640640-1640671, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

38. spacer 4.1|801924|32|NZ_CP017682|CRISPRCasFinder matches to position: 2077921-2077952, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

39. spacer 4.1|801924|32|NZ_CP017682|CRISPRCasFinder matches to position: 2467691-2467722, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

40. spacer 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder matches to position: 789072-789105, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

41. spacer 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder matches to position: 1144540-1144573, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

42. spacer 2.1|789097|31|NZ_CP017682|CRISPRCasFinder matches to position: 258141-258171, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

43. spacer 2.1|789097|31|NZ_CP017682|CRISPRCasFinder matches to position: 1660334-1660364, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

44. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 951554-951575, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

45. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 1660308-1660329, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

46. spacer 3.1|794564|22|NZ_CP017682|CRT matches to position: 1660422-1660443, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

47. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 951554-951575, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

48. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 1660308-1660329, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

49. spacer 3.2|794622|22|NZ_CP017682|CRT matches to position: 1660422-1660443, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

50. spacer 3.3|794680|23|NZ_CP017682|CRT matches to position: 135043-135065, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

51. spacer 3.3|794680|23|NZ_CP017682|CRT matches to position: 1952691-1952713, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

52. spacer 3.3|794680|23|NZ_CP017682|CRT matches to position: 2292102-2292124, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

53. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 951554-951575, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

54. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 1660308-1660329, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

55. spacer 3.4|794739|22|NZ_CP017682|CRT matches to position: 1660422-1660443, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

56. spacer 3.5|794797|23|NZ_CP017682|CRT matches to position: 135043-135065, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

57. spacer 3.5|794797|23|NZ_CP017682|CRT matches to position: 1952691-1952713, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

58. spacer 3.5|794797|23|NZ_CP017682|CRT matches to position: 2292102-2292124, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

59. spacer 6.1|1625997|33|NZ_CP017682|CRISPRCasFinder matches to position: 135024-135056, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

60. spacer 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder matches to position: 1747392-1747425, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

61. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 801874-801904, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

62. spacer 3.3|794680|23|NZ_CP017682|CRT matches to position: 1444562-1444584, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

63. spacer 3.3|794680|23|NZ_CP017682|CRT matches to position: 2053927-2053949, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

64. spacer 3.5|794797|23|NZ_CP017682|CRT matches to position: 1444562-1444584, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

65. spacer 3.5|794797|23|NZ_CP017682|CRT matches to position: 2053927-2053949, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

66. spacer 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder matches to position: 1360597-1360630, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

67. spacer 7.1|2053870|34|NZ_CP017682|CRISPRCasFinder matches to position: 2744913-2744946, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

68. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 36454-36484, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

69. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 334529-334559, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

70. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 622992-623022, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

71. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 838365-838395, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

72. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 1047550-1047580, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

73. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 1150141-1150171, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

74. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 1444615-1444645, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

75. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 1640635-1640665, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

76. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 1951285-1951315, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

77. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 2292155-2292185, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

78. spacer 10.1|2302956|31|NZ_CP017682|CRISPRCasFinder matches to position: 2467697-2467727, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017682_3 3.3|794680|23|NZ_CP017682|CRT 794680-794702 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP017682_3 3.3|794680|23|NZ_CP017682|CRT 794680-794702 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP017682_3 3.5|794797|23|NZ_CP017682|CRT 794797-794819 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP017682_3 3.5|794797|23|NZ_CP017682|CRT 794797-794819 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP017682_9 9.1|2194915|34|NZ_CP017682|CRISPRCasFinder 2194915-2194948 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP017682_9 9.1|2194915|34|NZ_CP017682|CRISPRCasFinder 2194915-2194948 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 3.3|794680|23|NZ_CP017682|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 3.3|794680|23|NZ_CP017682|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 3.5|794797|23|NZ_CP017682|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 3.5|794797|23|NZ_CP017682|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 9.1|2194915|34|NZ_CP017682|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 9.1|2194915|34|NZ_CP017682|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 358013 : 376405 25 Staphylococcus_phage(95.0%) integrase,terminase,transposase,coat attL 354738:354752|attR 369046:369060
DBSCAN-SWA_2 726523 : 734344 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 746315 : 760678 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 846440 : 902494 72 Staphylococcus_phage(70.0%) head,tail,plate,integrase,capsid,transposase,terminase,portal,holin attL 844528:844544|attR 878315:878331
DBSCAN-SWA_5 1049060 : 1057533 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1675521 : 1684564 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1809510 : 1871709 59 Staphylococcus_phage(95.65%) protease,tRNA NA
DBSCAN-SWA_8 1965530 : 2058810 108 Staphylococcus_phage(85.92%) protease,head,tail,tRNA,integrase,capsid,portal,terminase,holin attL 1961967:1961991|attR 2061096:2061120
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP017682.1|WP_000681968.1|2001289_2001466_-|hypothetical-protein 2001289_2001466_- 58 aa aa NA NA NA 1965530-2058810 yes
NZ_CP017682.1|WP_000990056.1|2001708_2001807_-|hypothetical-protein 2001708_2001807_- 32 aa aa NA NA NA 1965530-2058810 yes