CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP023966	Staphylococcus capitis strain FDAARGOS_378 chromosome, complete genome	2 crisprs	csa3,DEDDh,cas3,DinG,WYL	2	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023966_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023966_1

50122-50359

Orphan

Consensus_repeat	Method
GTGGCTCGGCAAGTACAAGTACATCAACAAGTGACTCAATATCTGATTCAG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP023966_1

>merge|NZ_CP023966|1|50122-50359|PILER-CR
TCGGCTAATACAAGTACATCAACAAGTGACTCAATATCTGATTCAGGCTCACTAAGTGAAAGTACTTCCCTAAGTAACTCAAGAAGTGCGAGTGGCTCGGCAAGTACAAGTACATCAACAAGTGACTCAATATCTGATTCAGGCTCACTAAGTGAAAGTACTTCCCTAAGTAACTCAAGAAGTGCGAGTGGCTCGGCAAGTACAAGTACATCAACAAGTGACTCAATATCTGATTCAG

>NZ_CP023966|1|1|50122-50359|PILER-CR
TCGGCTAATACAAGTACATCAACAAGTGACTCAATATCTGATTCAGGCTCA	CTAAGTGAAAGTACTTCCCTAAGTAACTCAAGAAGTGCGAGTGGC
TCGGCAAGTACAAGTACATCAACAAGTGACTCAATATCTGATTCAGGCTCA	CTAAGTGAAAGTACTTCCCTAAGTAACTCAAGAAGTGCGAGTGGC
TCGGCAAGTACAAGTACATCAACAAGTGACTCAATATCTGATTCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023966.1\|WP_098905344.1\|62305_63643_+\|accessory-Sec-system-glycosylation-chaperone-GtfB	unknown	unknown	gnl\|CDD\|274351
NZ_CP023966.1\|WP_098905333.1\|34168_34600_+\|cell-surface-protein	unknown	unknown	unknown
NZ_CP023966.1\|WP_047796840.1\|54732_56301_+\|accessory-Sec-system-protein-Asp1	unknown	unknown	gnl\|CDD\|274740
NZ_CP023966.1\|WP_047796833.1\|64826_65306_+\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|235497
NZ_CP023966.1\|WP_098905340.1\|53522_54722_+\|accessory-Sec-system-protein-translocase-subunit-SecY2	unknown	unknown	gnl\|CDD\|237095
NZ_CP023966.1\|WP_030058895.1\|40703_41669_+\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225762
NZ_CP023966.1\|WP_002454200.1\|63745_64105_+\|membrane-protein	unknown	unknown	unknown
NZ_CP023966.1\|WP_098905343.1\|60804_62313_+\|accessory-Sec-system-glycosyltransferase-GtfA	unknown	unknown	gnl\|CDD\|131964
NZ_CP023966.1\|WP_098905345.1\|64210_64558_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP023966.1\|WP_002435031.1\|41788_42562_+\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|131368
NZ_CP023966.1\|WP_098905336.1\|37205_38741_-\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|223808
NZ_CP023966.1\|WP_098905341.1\|56284_57844_+\|accessory-Sec-system-protein-Asp2	unknown	unknown	gnl\|CDD\|274739
NZ_CP023966.1\|WP_002434989.1\|43366_44176_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP023966.1\|WP_047796838.1\|57830_58403_+\|accessory-Sec-system-protein-Asp3	unknown	unknown	gnl\|CDD\|163423
NZ_CP023966.1\|WP_098905335.1\|36815_37193_-\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|227933
NZ_CP023966.1\|WP_098905342.1\|58395_60786_+\|accessory-Sec-system-translocase-SecA2	unknown	unknown	gnl\|CDD\|163426
NZ_CP023966.1\|WP_098905339.1\|44368_45019_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP023966.1\|WP_098905338.1\|42563_43370_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP023966.1\|WP_098905334.1\|35565_36735_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP023966.1\|WP_098905337.1\|38909_40469_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378253

Protein	Function_ID	Function_description	E-value
NZ_CP023966.1\|WP_098905344.1\|62305_63643_+\|accessory-Sec-system-glycosylation-chaperone-GtfB	gnl\|CDD\|274351	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair].	0
NZ_CP023966.1\|WP_098905341.1\|56284_57844_+\|accessory-Sec-system-protein-Asp2	gnl\|CDD\|274739	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP023966.1\|WP_047796840.1\|54732_56301_+\|accessory-Sec-system-protein-Asp1	gnl\|CDD\|274740	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP023966.1\|WP_047796833.1\|64826_65306_+\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|235497	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase.	9.82242e-106
NZ_CP023966.1\|WP_098905340.1\|53522_54722_+\|accessory-Sec-system-protein-translocase-subunit-SecY2	gnl\|CDD\|237095	PRK12417, secY, preprotein translocase subunit SecY; Reviewed.	1.39928e-155
NZ_CP023966.1\|WP_030058895.1\|40703_41669_+\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|225762	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism].	6.18702e-93
NZ_CP023966.1\|WP_098905343.1\|60804_62313_+\|accessory-Sec-system-glycosyltransferase-GtfA	gnl\|CDD\|131964	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. [Protein fate, Protein modification and repair].	0
NZ_CP023966.1\|WP_098905345.1\|64210_64558_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	0.00545614
NZ_CP023966.1\|WP_002435031.1\|41788_42562_+\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|131368	TIGR02315, Phosphonates_import_ATP-binding_protein_PhnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions].	1.75783e-146
NZ_CP023966.1\|WP_098905336.1\|37205_38741_-\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|223808	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism].	5.21253e-96
NZ_CP023966.1\|WP_002434989.1\|43366_44176_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	3.26291e-81
NZ_CP023966.1\|WP_047796838.1\|57830_58403_+\|accessory-Sec-system-protein-Asp3	gnl\|CDD\|163423	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.00217e-48
NZ_CP023966.1\|WP_098905335.1\|36815_37193_-\|DUF1801-domain-containing-protein	gnl\|CDD\|227933	COG5646, COG5646, Uncharacterized conserved protein [Function unknown].	4.36982e-27
NZ_CP023966.1\|WP_098905342.1\|58395_60786_+\|accessory-Sec-system-translocase-SecA2	gnl\|CDD\|163426	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP023966.1\|WP_098905339.1\|44368_45019_+\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.96417e-52
NZ_CP023966.1\|WP_098905338.1\|42563_43370_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	3.43583e-99
NZ_CP023966.1\|WP_098905334.1\|35565_36735_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.58935e-72
NZ_CP023966.1\|WP_098905337.1\|38909_40469_-\|DNA-binding-protein	gnl\|CDD\|378253	pfam09822, ABC_transp_aux, ABC-type uncharacterized transport system. This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.	0.000208589

>NZ_CP023966.1|WP_098905339.1|44368_45019_+|SDR-family-oxidoreductase
MNVLVIGSNGAVGRKVISQLKDTEHSSVALVRKEEQVSELKELGADKVVVQDLEEDFSSAFEGVDSVIFTAGSGGSTGADKTLLVDLWGAKKAVDYATKHQVKKFVHLSATDSVEPDKETDVMKPYAVAKHFSDLYIENSDLNYTIVHPGPLQNEEGTGKINAELDMTRDPNSYTIPREDVATVLIEALDASAVEGKDIFIQTGQTDIKDAINNIK
>NZ_CP023966.1|WP_002434989.1|43366_44176_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MNEQKYKLNSKRYRERIIKNWIIAVIVAAIIIWAFAGMPALELKSKSIEILKSIFKGLFHPDLGYIYIPAGEDLLRGLLETFAIAVIGTFIASIICIPFAFLGARNMVKLRPVTGISKFILSIIRVFPEIVMALIFIKAVGPGSFSGVLALGIHSVGMLGKLFVEDIESLDFSAVESLKASGANKTKTLIFAVIPQILPSFISLILYRFELNLRSASILGLIGAGGIGTPLIFALQTRSWDRVGIILIGLVIMVAIVDLISGAIRKRIV
>NZ_CP023966.1|WP_098905338.1|42563_43370_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MATPTSSTSKYDQYLNKKMSIKTSFTIILIAALIIWSFIYTGFSIGDLMIGIPQIGAFFGQMVPPDWSYLDQITKPMLDTIRMAIVGTFLGSIVSIPVALLCASNIVQTKWVAIPARFILNIVRTIPDLLLAAVFVAVFGIGQIPGVLALFILTICIIGKLLYESLETIEPGPMEAMTAVGANKVKWIVFGVVPQAISSFMSYVLFAFEINIRASAVLGLVGAGGIGLFYDQTLGLFQYKKTAMIILFTLLIVVIIDFVSSKVREKLA
>NZ_CP023966.1|WP_002435031.1|41788_42562_+|phosphonate-ABC-transporter-ATP-binding-protein
MSQIEFKDVNKVYPNGHVGLKNINLNIEKGDFAVIVGLSGAGKSTLLRSVNRLHDISSGDITIDGQSITKARGKQLLEMRRNIGMIFQHFNLVKRSTVLRNVLSGRVGYHPTWKMVLGLFPKEDKIKAMNALERVNILDKYDQRSDQLSGGQQQRISIARALCQESAIILADEPVASLDPLTTKQVMDDLKKINEELGITILINLHFVDLAKEYGSRIIGLRAGELVYDGPASEADDDVFNHIYGRSINEDEKLGVE
>NZ_CP023966.1|WP_030058895.1|40703_41669_+|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MKNLKFLVVLVLSVVIFAAACGNSSSLDNNKKSSDSGSDSGSSSGDYKPKELTVQFVPSQNADKLEAKAKPLEKLLSDKLGIPVKVSVSTNYNTIVEAMKSKKVDVGFLPPTAYTLAHDQKAADLLLQAQRYGVNKDGSSNKKLVDDYKSEILVKKNSGIKSLKDLKGKKIALQDVTSTAGYTFPLATLKKETGINATKDMKIVNVKGHDQAVISLLNGDVDAAAVFQDARTIVKKDQPNVFKDTKILKLTESIPNDTISVRPDMDKKFQEKLKKAFKDIAKSKKGHKIISEVYSHEGYTDTKDSNFDIVRKYEKEVQDMK
>NZ_CP023966.1|WP_098905337.1|38909_40469_-|DNA-binding-protein
MKLFKVLSSTVLATAISVTTIQSAHAMTQSTSSSSGQSDQTVLFDNSHAQTAGAADWVIDGAFSDYADSMKNKGYNVKELDGEANISNETLKNAHILVIPEANNPFKEKEQQAIVNFVKRGGSVIFISDHYNADRNLNRIDSSESMNGYRRGAYQDMTKDMNSGEKNSKAMQGVKSSDWLSNQFGVRFRYNALGDLNTQNIVSSKESFGITKDVKSVSMHSGSTLAITDPDKAKGIVYMPENLSNKQKWSYAVDQGIYSGGGTKEGPYIAISKVGKGKAAFIGDTSLVEDSSTKYKREDNGKSKKTYDGFKEQDNGTLLKNLITWLGKSDSHESMKDTGVKIDNKTPLLNFEKPENSTEPQHEPWSQPEKGYKWYDRSTFKPGSYGSSQSGSDNNDESSSNDNSNSHHDQTGNAEFNLPQGIQPNHPFKVTVKLKGYDANSTINNLTVGIYKDGGKQIGSFSSDGSQFSQPGYSKDQTVKTDSNGEATLTLTAKVSEDINGAHIRLKQGKKVVTTTDIH
>NZ_CP023966.1|WP_098905336.1|37205_38741_-|bifunctional-metallophosphatase/5'-nucleotidase
MTQLAFYVVSDVHGFIFPTDFSHRDVELPMGLLKANHIIEQDRSHYDGSIKIDNGDFLQGSPLCNYLVSELATSRPLTDIYNRLNFNFGTIGNHEFNYGLKYLKQTIHQLDYPMLCANILENGEPFTGQGITYIKSQGLTIGVIGLTTQFIPHWEQPEYIETLTFQSAVETLSSQLPELRKQSDVVVVSYHGGFERDLETGEPTEALTGENEASEVLRLFSDDIDVLITGHQHRDIATIYNQTAVIQPGTRGTKVGKIVLNIEHDNDVQIESCHLLDVEDCSSFEINQQDQNLRVHLEDWLDKKVATLPTSMRVENAFDARVKPHPFINLLNYILLESSGADIACTALFDSAKGFDKDVTMRDIINNYPFPNTFKVIELTGRDIKLAIERSAPYFDLHDEEISVSADFLEPKPQHFNYDIFAGIDYTIHVGRALGERVSDLFVDGKPLDEHKSYTICVNNYRAVGGGNYNMYENKPIIKDIQIEGAQLLINYLSTNDLSHIPKVVNFKVVK
>NZ_CP023966.1|WP_098905335.1|36815_37193_-|DUF1801-domain-containing-protein
MSEFNLFINDIENEEHREKLKHLFEWIETQYSDLKPVVKWNQPMYTYNETFIIAFSKAKQHFSIMPEAACLKQFKQRVTNAGYTQTENLFRIKWNQEIDYDLIGDMIKLNMEEKKDYTKFWRDHK
>NZ_CP023966.1|WP_098905334.1|35565_36735_+|MFS-transporter
MRENKMMFFIFMLGTFTVGMAEYVVTGLLTQIADDMKVSISSAGLLISVYAISVAVIGPFMRIFTLKVHGHRLLPILVAIFIVSNLVGMLAPNFNILLLSRLMSAAMHAPFFGVCMSVAAAVAPPAKKPQAIALVQAGLTIAVMIGVPFGSFLGGFANWRTVFGVMILLAIITMLGMIKFVPKVSLSAEANIAKELKVFKNPHILIVISIIVFGYSGVFTTYTFMEPMIRDFSPYKVVGLTVCLFMFGLGGVIGNLVTGSIPEHKLTKNLYLTFLLLFITIILFVTVVHNAVLALIVCFMFGFGTFGTTPLLNSKIILSAHEAPLLASALAASVFNVANFLGAIIGSILLSIGLPYIQITFISGGIIILGIILNFLNNIYEKKHITFSN
>NZ_CP023966.1|WP_098905333.1|34168_34600_+|cell-surface-protein
MKKVTLLSSAVLAGTIALSGITGVANASDYHHGNFATYKEKVESLKKLKKDGAISNKEYKGKMEALKEFDKQGRTNMGSRPYGGMPPKGMTSEQYSELEYNVGNANEMPNSVFNKRIDRETQKIADKYKTTIYAPQKTFKPHK
>NZ_CP023966.1|WP_098905340.1|53522_54722_+|accessory-Sec-system-protein-translocase-subunit-SecY2
MLKEFEYKILYKRILFTCFILIIYILGSNISIVGNEAIKQHKDSFFKLAISNVGGDLNTLNIFSLGLGPWLSSMIIITLMNYKNEDKVKTQTRVERHFKERLLTLLLSTIQGFYIIHSFINKKAITDTNIFILLLVLITGTLFLVWLADQNTTYGIAGPMPIVLMSLVKSMFNSHFAKLNLNPILLVIIICSLALILFILLFIERSEYRLEYNDIMNISSKDTPTYLSWKLNPAGSITIMMSLSIFILENNIVNLIGRLAVDKDFETTIFSFSNPIGIMIYLLMQIVLGYVLSRFLINTRRKSKEFLKNGNYFEGIYPGKHTIRFLSQKARRVCWSGSIIVAIVLAIPLYCSLLVPHLFEEIYFSIQLIVFVYIGINIAETLRAYLYFDGYKQILDKYW
>NZ_CP023966.1|WP_047796840.1|54732_56301_+|accessory-Sec-system-protein-Asp1
MKRFIPAWYSHDKWWESTSVPFYQKRQYTDFDDMISLMTMHSKNNVDYQLMILSFSPYLRTFLHRYDLFETNYWSVFDDIQGVSHQTPQAIDYRDLAWPENTEFIFTPYQIQAVTGEHTFSKIHFSQEGYLMWIEDFENNIIQRRYVIDDRGFISAVRTYTETGQSKMKHYFSIKGEEIFKEDLRNKTVTIKEQFQSNFKQTTYATMADLIEEKFKEYAEREIKKDDLIIVASDERHNSVMAHTIDESSLCFSVFTERNKKVTTELFDSISQARYCLVDTQDNQREIQRYAKESQTHLHLLRVTPFDAQTISNKSSQLYDTYVGLWIDQLPKHELRVILTSLFQYIQQKDHFKLKLLTKYKNDPNDWLMEEIARLNDTYHQEKQEHSDEIEDILASQIKKETVIELEYVPFSEDFVRAVSNLRLVVDLSNEPDLFLQICCIGAGVPQVNYRGTDYVKHEQNGLIIKDISQIVSALDYFLVHLKKWNYSYAYSMRLVDEFSSINIIHQINQLFEGDDKYATYI
>NZ_CP023966.1|WP_098905341.1|56284_57844_+|accessory-Sec-system-protein-Asp2
MPRTFKVLQIGGNDLENLFENKREVEWDYIDTAVFDFESGYLQAVEALIEQNGAFDFVFTQAPYSESLINLFKIVSTPYNTVIDEAYWDVHFQEEKIVQQNFIKPLKYDNEEDLHQKLQAITFPGQYGDKVTPIHCRVNTAFIGKYQFNGNESLEISGNFGDQLTPLVTWSRNIIADENKVNQIWPEFKIEGEVKIQYTLRMIPVYSTEQPVETFIFEQNELDQPIELPARPYKANVSISLKAQGEGTLFVGSIHKRWSRLELGQFILGGQRFSDKNRNEFFHYFNPGDFKPPLNVYFSGYRTAEGFEGFFMMNRLNAPFILISDPRIEGGAFYLGSEDYENGIKDVIQGALDYLGFTHDQLILSGLSMGSFGALYYATRLQSTAVIVGKPLINVGTIANNMKLVRPNDFGTSLDVLRSNEGGISENEINQLDQKFWNQIHNSQLTQTTFAIAYMEHDDYDINAFHELLPVLTKQYARVMSRSVPGRHNDDSSTITNWFINFYHLIMAQQFGRESHARS
>NZ_CP023966.1|WP_047796838.1|57830_58403_+|accessory-Sec-system-protein-Asp3
MQEAKQFEVKWRLVNLTTFMYGTKLHFNNDDIYFENPLMPSGTVIHNWYMLTNFTEDRVSPKLPILKKGHRYLFKFNFQVEPEGAAYFKIKFYRKNKEQFEYKIIKNKEEEIVYPLEAHSYQLELVNAGMDHLHFQNITIVELGDGTYRNSSTAKGINTKEKFEIMNRVIKNARTYDLDALSDAGGENRE
>NZ_CP023966.1|WP_098905342.1|58395_60786_+|accessory-Sec-system-translocase-SecA2
MNSGINTIINNMRLRRVSKSLKQINALSKEYSNYTDEQLKAKTLQFKERLQSNKTTLDKLLPEAYATVREASKRVLGMYPKDVQVLGAIVMHQGNIAEMQTGEGKTLTATMPLYLNGLTGKGAYLITTNEYLAKRDYQEMKPLYEWLGLSASLGFVDIPNYEYEENEKYHLYHHDIVYTTNGRLGFDYLIDNLADDIQAKFLPDLNFAIIDEVDSIILDAAQTPLVISGAPRVQSNLFHIVKSFVETLEEDVHFQVKFNKKEVWLTEEGIEAANHYFKVNNMYENQHFDLVRIINLSLRAKYLFKYNLDYFIFDGEIVLIDRITGRMLQGTKLQSGLHQAIETIEDVEISRDMSVMATITFQNLFKQFNQFSGMTGTGKLGEKEFFDLYSKIVVEIPTNSPIKRDDRPDRVFANGNIKNEAILKSVVDIHRTQQPVLLITRTAEAAEYFSQQLFKKDIPNNLLIAQNAAKEAQMIAEAGQLSAVTVATSMAGRGTDIKLAKDVFEIGGLAVIINEHMENSRVDRQLRGRSGRQGDPGYSQIFVSLDDYLVKRWSNSNLVGNEKLLTLESSKLENSTLFQRRVKSIVNKAQRVSEETAMVNREMANEFEKSISIQREKIYDLRDQILEREHFEDFNFEQLARDVFANDIKYKKLINEEALINYIYKNLSFVFNETVSNIDIKNREEVIQFLIKQFKQQLNHNLKEVSDPYLKRRFLQKSFLKAIDSEWIEQVDNLQQLKASVNNRQNGQRNIIYEYHKVALETYELMAKDIKRKIIRNLCLSILTFDKSDDMVIHFP
>NZ_CP023966.1|WP_098905343.1|60804_62313_+|accessory-Sec-system-glycosyltransferase-GtfA
MTIYNINFGIGWASSGVEYAQAYRAQLLRQLNYPIKFVFLDFIQSENIQTLTSNIGFKDDEIIWLYQYFTDINIAPTTYTVNDLISELGNEVSSYERNGKVLRLYLDNNETFVTCYLKNPEENYVDRAEFVVNGMLIRKDFYSYVRTFSEYYAPYDKRAKLYMRQFYNEDGSIVYKEYIDDDAHVYVFDDARLYSKEEFIAYFIRKLHLESDDIVIIDRATDVGQAILQNKGDSKVGVVVHAEHYSMNSTDDTHILWNNYYEYQFENAKYIDFFITATDLQNKILNEQFKNYTHDSPRIRTIPVGSLHQLIYPQEPRMPFSIITASRLASEKHVDWIALAVIKARKALPELTFDIYGHGPEQERIEKIIQEHHAQDYIRLKGHVNLQDVYRHYQLFVAASQSEGFGLTLMEAVGSGLGMIGFDVNYGSPTFIKDAHNGYLIPINLDRESINDVTDHMATKIIQYFENGPSHPHDVSYEIAEEFKTTHIVEKWEQLIKEVLHD
>NZ_CP023966.1|WP_098905344.1|62305_63643_+|accessory-Sec-system-glycosylation-chaperone-GtfB
MINLFENYDSNTRELHESLKIAGYHPFTIVLNDDGFLPDEVTSPYQYFANYQIYDDDKPAFFNDVTTPPFWEIKGNGTMAQVIDMGELRGKIFYKENYKTRVVSYVEWLDKHQRLRSVDYYTKEGFKYAEKVYDLSGTPILKKYMDRNGKEVIYENYVTQNIVLEYRGKSYFFETTNEFIAFYLNELNIDYKQVVINSLSTPFITLYHQSIAQQVVLFWQEHSQGHVPGNMKLMFEPNNFSQFSVIIPEREEYQIITNQLNSTENQFVYPSGYLYSKKKENQLSKNILILTNSDQIPHLEALIQRHDDFNFHIGAVTEMSTVLTSLEHYPNAKLYPTIKRDMVEELYQRCDIYLDINEGGEILNAVRTAFDYNLLILGYKETAHHLTMTSPSHLFSAENVAELSRVLTEVGSNKDIFKDKLDQQSSHANEVSVSTFKTALNQSLN
>NZ_CP023966.1|WP_002454200.1|63745_64105_+|membrane-protein
MNNFDERYDERHNEKANNVLGALSYLSVFFAPVLFPLVVWIIAKPPGSTHSRNALFNHIFTWVFVAIGLLSFMIIPALFDSAHSGIGITIAFIVAAIFFIWAIVLFFTNIIRGIKLLII
>NZ_CP023966.1|WP_098905345.1|64210_64558_-|LPXTG-cell-wall-anchor-domain-containing-protein
MTQKFVTCTISSVLITLAFLVVCNQPVSAATPNQNQTMNQLQLHSLKDESRHASSKPHLFKSNAVEHKHPIHQTTSKSTLPETGKSISHSPVMAGIIALVLGLVILIHKKISARK
>NZ_CP023966.1|WP_047796833.1|64826_65306_+|peptide-methionine-(S)-S-oxide-reductase
MDIVYLAGGCLWGTEAFFKTIPGVINTEAGRVNGTTNNLDGPYDGYAECVKVEFNSNQVTIKELMSYLFEMIDPYSLNKQGQDVGEKYRTGIYSDDSNHLNEARDFIDSRSDAQRIMVEVKPLLNYVKSAEEHQNHLDKHPEDQYLCHVPESLLNKYKK

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Crispr_ID: NZ_CP023966_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023966_2

1217193-1217275

Orphan

Consensus_repeat	Method
TTATGCATTAGTCAAAGACTAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023966_2

>merge|NZ_CP023966|2|1217193-1217275|CRISPRCasFinder
TTATGCATTAGTCAAAGACTAATGCGTTCATTTTACAACTGTGTTGTTATTAGTTGGTTTTATGCATTAGTCAAAGACTAATG

>NZ_CP023966|2|1|1217193-1217275|CRISPRCasFinder
TTATGCATTAGTCAAAGACTAATG	CGTTCATTTTACAACTGTGTTGTTATTAGTTGGTT
TTATGCATTAGTCAAAGACTAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023966.1\|WP_023350236.1\|1207964_1209611_+\|elastin-binding-protein-EbpS	unknown	unknown	gnl\|CDD\|366664
NZ_CP023966.1\|WP_023350241.1\|1218853_1219813_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|131795
NZ_CP023966.1\|WP_002433612.1\|1224171_1225416_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP023966.1\|WP_023350244.1\|1221792_1222857_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|234565
NZ_CP023966.1\|WP_002433785.1\|1218126_1218852_+\|demethylmenaquinone-methyltransferase	unknown	unknown	gnl\|CDD\|131799
NZ_CP023966.1\|WP_023350240.1\|1217552_1218125_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369311
NZ_CP023966.1\|WP_002453288.1\|1212955_1214134_+\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235851
NZ_CP023966.1\|WP_023350243.1\|1220599_1221766_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|235438
NZ_CP023966.1\|WP_023350239.1\|1215676_1216675_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP023966.1\|WP_023350245.1\|1222866_1224168_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP023966.1\|WP_030059045.1\|1225430_1225997_+\|YpiB-family-protein	unknown	unknown	gnl\|CDD\|227869
NZ_CP023966.1\|WP_023350242.1\|1219957_1220407_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP023966.1\|WP_023350237.1\|1209800_1210787_+\|YpdA-family-putative-bacillithiol-disulfide-reductase	unknown	unknown	gnl\|CDD\|188533
NZ_CP023966.1\|WP_002433931.1\|1216845_1217118_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP023966.1\|WP_049307528.1\|1225993_1226593_+\|DUF1405-domain-containing-protein	unknown	unknown	gnl\|CDD\|226797
NZ_CP023966.1\|WP_002433890.1\|1211889_1212549_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP023966.1\|WP_023350238.1\|1214346_1215657_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_CP023966.1\|WP_023350234.1\|1205392_1206355_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227291
NZ_CP023966.1\|WP_023350235.1\|1206341_1207721_+\|ATP-dependent-DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|223588
NZ_CP023966.1\|WP_002433810.1\|1210843_1211812_-\|asparaginase	unknown	unknown	gnl\|CDD\|199208

Protein	Function_ID	Function_description	E-value
NZ_CP023966.1\|WP_023350236.1\|1207964_1209611_+\|elastin-binding-protein-EbpS	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	1.11964e-06
NZ_CP023966.1\|WP_023350241.1\|1218853_1219813_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|131795	TIGR02748, Heptaprenyl_diphosphate_synthase_component_2, heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	3.86665e-124
NZ_CP023966.1\|WP_002433612.1\|1224171_1225416_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.96736e-11
NZ_CP023966.1\|WP_023350244.1\|1221792_1222857_+\|3-dehydroquinate-synthase	gnl\|CDD\|234565	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.	5.56754e-135
NZ_CP023966.1\|WP_002433785.1\|1218126_1218852_+\|demethylmenaquinone-methyltransferase	gnl\|CDD\|131799	TIGR02752, Demethylmenaquinone_methyltransferase, demethylmenaquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	6.53573e-139
NZ_CP023966.1\|WP_023350240.1\|1217552_1218125_+\|hypothetical-protein	gnl\|CDD\|369311	pfam07307, HEPPP_synt_1, Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1. This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (EC:2.5.1.30) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis.	0.000385524
NZ_CP023966.1\|WP_002453288.1\|1212955_1214134_+\|30S-ribosomal-protein-S1	gnl\|CDD\|235851	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.	0
NZ_CP023966.1\|WP_023350243.1\|1220599_1221766_+\|chorismate-synthase	gnl\|CDD\|235438	PRK05382, PRK05382, chorismate synthase; Validated.	0
NZ_CP023966.1\|WP_023350239.1\|1215676_1216675_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	0
NZ_CP023966.1\|WP_023350245.1\|1222866_1224168_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	1.69965e-176
NZ_CP023966.1\|WP_030059045.1\|1225430_1225997_+\|YpiB-family-protein	gnl\|CDD\|227869	COG5582, COG5582, Uncharacterized conserved protein [Function unknown].	6.84807e-42
NZ_CP023966.1\|WP_023350242.1\|1219957_1220407_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.75051e-91
NZ_CP023966.1\|WP_023350237.1\|1209800_1210787_+\|YpdA-family-putative-bacillithiol-disulfide-reductase	gnl\|CDD\|188533	TIGR04018, thioredoxin_reductase, putative bacillithiol system oxidoreductase, YpdA family. Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP023966.1\|WP_002433931.1\|1216845_1217118_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	1.01041e-45
NZ_CP023966.1\|WP_049307528.1\|1225993_1226593_+\|DUF1405-domain-containing-protein	gnl\|CDD\|226797	COG4347, COG4347, Predicted membrane protein [Function unknown].	3.11376e-59
NZ_CP023966.1\|WP_002433890.1\|1211889_1212549_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	1.05221e-106
NZ_CP023966.1\|WP_023350238.1\|1214346_1215657_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_CP023966.1\|WP_023350234.1\|1205392_1206355_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227291	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown].	2.12987e-77
NZ_CP023966.1\|WP_023350235.1\|1206341_1207721_+\|ATP-dependent-DNA-helicase-RecQ	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	2.08858e-152
NZ_CP023966.1\|WP_002433810.1\|1210843_1211812_-\|asparaginase	gnl\|CDD\|199208	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.	2.67214e-136

>NZ_CP023966.1|WP_002433931.1|1216845_1217118_+|HU-family-DNA-binding-protein
MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQKSLAKGEKVQLIGFGNFEVRERAARKGRNPQTGKEIDIPASKVPAFKAGKALKDAVK
>NZ_CP023966.1|WP_023350239.1|1215676_1216675_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MTKITVFGMGSFGTALANVLAQNGHDVLMWGKNNDSVNELNTHHMNKNYLKDAKLDETIQATTHLEEAIQHADVYLMALPTKAMREVATNIDKLLTSKKTFIHVAKGIENGTFKRVSEMIDDSISSEHNAGIGVLSGPSHAEEVVIKQPTTVAASSKDEKISALIQDLFMNDYLRVYTNNDLVGVELGGALKNIIAVASGIVAGMGFGDNAKAALMTRGLAEISRLGEKLGADPMTFLGLGGIGDLIVTCTSTHSRNYTLGFKLGQGKTMDEALQEMKMVVEGVYTTKSVYHLAKKEHVDMPITSALYRVLFEDVPVNESVKELMGRDKKAE
>NZ_CP023966.1|WP_023350238.1|1214346_1215657_+|ribosome-biogenesis-GTPase-Der
MTKPIVAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGGIEIGDAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNKVDNPEMRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDVVVENFGEETEDPYDEDTIRLSIIGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVIDAEQGIIEQDKRVAGYAHEEGKAIVIVVNKWDTVEKDSKTMKKFTEDVRNEFQFLDYAQIAFVSAKESLRLRTLFPYITEASENHKKRVQSSTLNEVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTFVVFVNDVELMHFSYKRYLENQIRNAFGFEGTPIHIIPRKRN
>NZ_CP023966.1|WP_002453288.1|1212955_1214134_+|30S-ribosomal-protein-S1
MTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTKIEFDEENDSGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQAENDVKKASLLDSLSEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVESPEQVVSVGDNVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEIAPAVQGLVHISEIDHKHIGSPSEKLEPGQQVNVKILGIDEENERISLSIKATLPKEDVIESDESTTQSYLENDNDEDNPTLGDVFGDKFKDLKF
>NZ_CP023966.1|WP_002433890.1|1211889_1212549_+|(d)CMP-kinase
MSSINIALDGPAAAGKSTIAKQVASRLTMIYVDTGAMYRAITYKYLQNGKPSNFDELIQSTELELTYDKEKGQRIILDGKDVTDYLRENDVTNHVSYVASKEPVRSFAVQIQKDLAAKKGIVMDGRDIGTVVLPNAELKVYMIASVEERAERRQKENELRGIESNLEQLKQEIEDRDNYDMNREISPLKKADDAITLDTTGKSIEVVTNEILSMVDHLK
>NZ_CP023966.1|WP_002433810.1|1210843_1211812_-|asparaginase
MKKLLVIHTGGTISMSQDASNKVVTNDDNPISKHQDIIGQYAQVEETHLFNVPSPHMTIEKVTQLQHKIIQCVEISEYDGYVITHGTDTLEETAFLLDLLLEIEEPVVITGAMRSSNEIGSDGLYNFISAIRVASSNDASGKGVMVVFNDEIHTARNVTKTHTSNINTFQSPNHGPLGVLTKDRVQFHHHPYRQSSFKMINHQLYVPLIKSYMGMGSDLLEFYANQGVDGIVVEALGQGNLPTTCLHGLKQILDNDIPIVLVSRSFNGIVSPVYAYEGGGADLFEKGVIFSNGLNGPKARLKLLVGLSQNMNHQKLKNYFEE
>NZ_CP023966.1|WP_023350237.1|1209800_1210787_+|YpdA-family-putative-bacillithiol-disulfide-reductase
MQRVESIIIGGGPCGLSAAIEQKKKGIETLVIEKGNVVESIYNYPTHQTFFSSSDKLSIGDIPFIVEESKPRRNQALVYYREVVKHHQLNIHPFEEVLTVKKIDNKFTITTTKDVYECKFLTVATGYYGQHNKLEVEGAELPKVFHYFKEAHPYFNQNVVIIGGKNSAVDAALELEKAGANVTVIYRGERYPKAIKPWILPNFESLVNHEKITMEFNANVTQITEDTVTYEKDGRTIEIPNDYVFAMIGYHPDYNFLESIGIEINTNEYGTAPVYNRETYETNVENCYIAGVIAAGNDANTIFIENGKYHGGIITQSILSKKQTPLES
>NZ_CP023966.1|WP_023350236.1|1207964_1209611_+|elastin-binding-protein-EbpS
MSNNSFKDDFEKNRQSIDPEEHNNRVNDEQQDESKENIEDKSNQQFPPRNAQRRKRRRDVATNHNKQQDDRNDNSNENNSLDDRYDEASLHNGENDNYDTASRTDHGQHDHDGNLNRSSNNVREDQGAQDDRLGSGKDATIAGGAAGAGATGNAAQHSNKKAGARPGPKVNEGHNNDLTDDNHRRQQDHEERDFDEDRERHDKKSGKGKKAAAAGAGVAGVAGAAGVAKHHHDEKNKNHEDKHASHDQHHDTNDKRNNQHDKDFDHERRNNDNKDHDKKSGKGKKAAAVGTGAAGAAGAAGLAKHEHDKHKDNRNQHDHGRRDDRNNNRDDRNYDRRNDNRDNKKKGGIMKILLPLIAAVLILGAIAIFGGMALNNHNNSKNDDNKVSDQSKKDSDKKANDKDKASSDKDKDKNKDGNKDSDKDKASSNNSASNSDENGNSANGGAAGSDQNANSTDNSSNQNGTANNQNQGTQNNQQNNGNSTQGNNNNQQNTQGQQSHTVNGKENLYRIAIQYYGEGTQQNVDKIKRANGLSSNDIHNGQTLVIPQ
>NZ_CP023966.1|WP_023350235.1|1206341_1207721_+|ATP-dependent-DNA-helicase-RecQ
MLEDKLKEWFGFETFKRGQKEIIESILAGKHTLGILPTGSGKSLCYQLPTYLIEKPTLVISPLISLMDDQVMQMKLNGESHVSYIHSGMDEIEKRNHINQISQSRFIYLSPEFLLQPQNFKLISHLDFGLIVLDEAHCLSEWGYDFRPHYALIGQITSHFKNARILALTATAPPHLEEDLSHILSIDLNVIKTSMNRDNISLQHKNFNDDDEKIKWLIPFLSYSGPTIIYISSKKRCLELAKLIYEAGFLTGIYHGDLSYQERQTVQQQFLNNDIPIIVATSAFGMGINKKDIRTVIHFHLSSSPSNYLQEIGRAGRDGKPSQAISLYQPDDSFILETLLFADMMTEEDISMFELGEFLPPVKKDILDTLYRQFTINDLKSIFKKSFQRKRLGYMRILGYKNLDQCRRNYLLEFFGEHPDKPVRCCDNDTELEEIKTFNRKKVKRKMNYKEKLQNLFED
>NZ_CP023966.1|WP_023350234.1|1205392_1206355_+|helix-turn-helix-domain-containing-protein
MYDILSYAIDHAFNYKTNKSIYNILIGKKSHQTFFDASSQQLLSLYHSLPNLKYPTFERFILQKDDFNHELDIKTHPRYTYDSLTRTFSCIQLLIQTLSNTRKDTFKFIPVVQNTYVQQKVKQLYNHIKLSQLEASFISEIYSLFDAIERRNNKNVLHYYLQGYEEPMYTRQQISLIEDIKQSELFELEMNQLIDLLDEIEDESNYPILSQTIILPQLLNQTFLSYQKLLHGMNMNEIAEHQNVKINTIEDHVLEIFIKGYQNDYNTYVNQKQIDQFIQYYDHHIGLRLREYKQAFEDLTYFQIKLIIVGIERGDLRVRR
>NZ_CP023966.1|WP_023350240.1|1217552_1218125_+|hypothetical-protein
METTISKLNKQIEQRLKGINDYESIHINSSLGNLLDSYSIPEKAKLACLTIDTSMSHLDDIAKNNLSKNGILIGDLLSAHYYTLLAEINDLSYQLSMSEAIVKVNELKSSLHQQTLSEYEISEAIIDIEVLFPYITLAHFGKKVDKYALFYELTNNDDGYYPSYLNQYDEQAIDQYFNTINQSYIKRRGN
>NZ_CP023966.1|WP_002433785.1|1218126_1218852_+|demethylmenaquinone-methyltransferase
MGENQAKKEQVHTVFQNISQKYDRLNNIISFEQHKVWRKHVMKHMRVKEGSQALDVCCGTADWTIALSKAVGNKGHVTGLDFSENMLEVGKEKTSSLNNVKLVHGDAMNLPFDDNTFDYVTVGFGLRNVPDYLVALQEMHRVLKPGGMVVCLETSQPTLPLFKQVYSLYFKFVMPIFGKMFAKSKEEYEWLQQSTFNFPDKQTLKRLFFEAGFNDITVRSFTGGVAAMHLGYKEKDSTKGD
>NZ_CP023966.1|WP_023350241.1|1218853_1219813_+|polyprenyl-synthetase-family-protein
MAKLNINNEIKKVEERLERAIQSTDQTLEEASFHLLSSGGKRVRPVFVILSSQFGTSEGTSEDTYRVAVALELIHMATLVHDDVIDKSDKRRGRPTISKKWDQTTAILTGNFLLALGLQHLSEIKDARVHSIISNSIVDVCRGELFQFQDQFNSEQNITNYLRRINRKTALLIQLATEVGAITSGASKETIRKLKLIGHYIGMSFQIIDDVLDFTSSEKKLGKPVGSDLMNGHITLPVLLEMRKNKDFKQKITNLNAQSPQSDFDTCIQTIRKSDNIEESKAISEKYLNKAIALIEELEEGPNKNLFKKLIKKMGSRNK
>NZ_CP023966.1|WP_023350242.1|1219957_1220407_+|nucleoside-diphosphate-kinase
MERTFLMIKPDAVQRNLIGEIISRIENKGLKLVGGKLMQVPTELAEKHYSEHEGKPFYEKLISFITSAPVFAMVVEGEDAVAVSRHIIGSTNPSEAAPGTIRGDLGLTVGRNIIHGSDSVESAQREISLWFNSNEIADYTSPREDWLYE
>NZ_CP023966.1|WP_023350243.1|1220599_1221766_+|chorismate-synthase
MRYLTSGESHGPQLTVIIEGVPANLEIKAEDINKEMFKRQGGYGRGRRMQIEKDAIEIVSGVRNGYTLGSPITLVVTNDDFTHWRKIMGVAPISDEERENMKRTITKPRPGHADLVGGMKYNHRDLRNVLERSSARETAARVAVGAVSKILLEQLDIHMYSRVVEIGGVKDEGLYDTETFKANIDKNDVRVINEDIAQQMRDKIDEAKKEGDSIGGVVQVMAENMPVGVGSYVHYDRKLDGRIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEIHYDSDSGYYRATNHLGGFEGGMSNGMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASVVCEHVVAFELAKALLEEFQSNHIDQLKSQIEERRQLNIEF
>NZ_CP023966.1|WP_023350244.1|1221792_1222857_+|3-dehydroquinate-synthase
MKLETTYENNNYPIIVEHDAIEYLDSFTKDYDKVFFIIDANVYHQFSKKIDTLTKKHHAQKIIIPAGEQTKTFAQYNQTMESLLSHQLTRQTCIIALGGGATGDFAGFIAATLLRGVGFIQVPTTILAHDSSVGGKVGINSKHGKNLIGAFYRPKAVIYDLNFLETLPYTEVLSGYAEVYKHALLNGKEATQNIEAHFSSDKQLKSLNQLDYYLFKGIETKLHIVVEDEKEKGMRKFLNLGHTFGHAVEYEHKIPHGHAVMIGILYQFIVANQMLHTEYDIQHFINYLQCLNYPLEIIPKLNFEDTYQFMLLDKKNNSEGIQMVLLQDWGSPIVLHVDKTRHLKAFNQLQSYFR
>NZ_CP023966.1|WP_023350245.1|1222866_1224168_+|3-phosphoshikimate-1-carboxyvinyltransferase
MTNSEVIDINGPLKGEIEVPGDKSMTHRAIMLASLATGQTTIYKPLLGEDCRRTMEIFELLGVKITEHEETIIIDSPGYQQFKTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSIGKRPMDRVLKPLLQMNAHISGIEGNYTPLIIKPSIIKGIEYQMEVASAQVKSAILFASIFSEEATTVTEIDVSRNHTETMFEHFNIPIEIEGKTIRTSPHAIQHIKAQDFHVPGDISSAAFFIVAALITPGSDITIHNVGINPTRSGIIDIVELMGGNIELNNVTHDAEPTASIRVKYTPTLKPITIEGDIVPKAIDELPVVALLCTQASGTCIIKDAEELKVKETNRIDTTADMLNMLGFSLQPTNDGLIIHPSEFKANATVDSQTDHRIGMMLAVASLLSSEPLTIEQFDAVNVSFPGFLPKLKLLENEGK
>NZ_CP023966.1|WP_002433612.1|1224171_1225416_+|tetratricopeptide-repeat-protein
MEDIYKLIDDINLQKLENLDSRVNEALSSNNDDALFILGETLYNFGLTPQGLEVFRTLYHKYPDESELLIYFIEGLMSENQTDEALEYLAEVETSTEKLMLEADLYQQINMLEVAIDKLQEALEIEPNDPIIHFALAELLYFDGQYLRATTEYETVLETGEYQVNGVNLFSRMADCSLQSGNYTDSIGLFDEISEDEMNSEDYFKKAIAYEKNDLTQEAIKIMKTLLSKDPDFIQGYFYLQSLYENEKNYPDAIETGKEGLRLSQFYKELMVSTGSLEIEHGDANEGVELLKQALEVDNAYHEPLLILSDLYRNEEDYEAIIQLLTFVDEEDLDPVFMWHLAYAYGHEERDKEAQHFFELAYPTLNTQSEFLSDYYFYLLEIGHKDKAKSILDKLLEIDPSNETWHDEAMRIQS
>NZ_CP023966.1|WP_030059045.1|1225430_1225997_+|YpiB-family-protein
MNESLIRMKQSFLEYLLFQYRFKSRITVWVLNYLKANHDKLNLVHFVSEKIKQHHTLEIAEVNAHASAIQFTKDDQTYINTNEIFEYIANNTIRLDIQIHFADNHKNEPRYDDLILAQLIHSPSYSAYVQDLYAISMNQRKQSSLIENLQENIDLSLQMNEPERFYQLTQILNALKMKDVDAIHEEEQ
>NZ_CP023966.1|WP_049307528.1|1225993_1226593_+|DUF1405-domain-containing-protein
MSDYKWIWEMTLYRKWVLIFLIICNVAGTIYGYDWYSGQLYITPRYFKPFVPDSPTASLFLSLSIMLMLFNKRSAILNALAFVTLIKYGVWAVIMNILMFVEQGEVTINGIMLIVSHGIMAVEAIYFYPRFKVTMTGFLVALIWVLINDIIDYGFGQFPYYDFIASHTFQIGVLSVCLSISALILYLVLQRFMKVKTFD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP023966_1	1.1\|50173\|45\|NZ_CP023966\|PILER-CR	50173-50217	45	NZ_CP023966.1	50360-50404	0	1.0
NZ_CP023966_1	1.2\|50269\|45\|NZ_CP023966\|PILER-CR	50269-50313	45	NZ_CP023966.1	50360-50404	0	1.0
NZ_CP023966_1	1.1\|50173\|45\|NZ_CP023966\|PILER-CR	50173-50217	45	NZ_CP023966.1	50456-50500	1	0.978
NZ_CP023966_1	1.1\|50173\|45\|NZ_CP023966\|PILER-CR	50173-50217	45	NZ_CP023966.1	50552-50596	1	0.978
NZ_CP023966_1	1.2\|50269\|45\|NZ_CP023966\|PILER-CR	50269-50313	45	NZ_CP023966.1	50456-50500	1	0.978
NZ_CP023966_1	1.2\|50269\|45\|NZ_CP023966\|PILER-CR	50269-50313	45	NZ_CP023966.1	50552-50596	1	0.978

1. spacer 1.1|50173|45|NZ_CP023966|PILER-CR matches to position: 50360-50404, mismatch: 0, identity: 1.0

gctcactaagtgaaagtacttccctaagtaactcaagaagtgcga	CRISPR spacer
gctcactaagtgaaagtacttccctaagtaactcaagaagtgcga	Protospacer
*********************************************

2. spacer 1.2|50269|45|NZ_CP023966|PILER-CR matches to position: 50360-50404, mismatch: 0, identity: 1.0

gctcactaagtgaaagtacttccctaagtaactcaagaagtgcga	CRISPR spacer
gctcactaagtgaaagtacttccctaagtaactcaagaagtgcga	Protospacer
*********************************************

3. spacer 1.1|50173|45|NZ_CP023966|PILER-CR matches to position: 50456-50500, mismatch: 1, identity: 0.978

gctcactaagtgaaagtacttccctaagtaactcaagaagtgcga	CRISPR spacer
gctcactaagtgaaagtacttccctaaataactcaagaagtgcga	Protospacer
***************************.*****************

4. spacer 1.1|50173|45|NZ_CP023966|PILER-CR matches to position: 50552-50596, mismatch: 1, identity: 0.978

gctcactaagtgaaagtacttccctaagtaactcaagaagtgcga	CRISPR spacer
gctcactaagtgaaagtacttccctaaataactcaagaagtgcga	Protospacer
***************************.*****************

5. spacer 1.2|50269|45|NZ_CP023966|PILER-CR matches to position: 50456-50500, mismatch: 1, identity: 0.978

gctcactaagtgaaagtacttccctaagtaactcaagaagtgcga	CRISPR spacer
gctcactaagtgaaagtacttccctaaataactcaagaagtgcga	Protospacer
***************************.*****************

6. spacer 1.2|50269|45|NZ_CP023966|PILER-CR matches to position: 50552-50596, mismatch: 1, identity: 0.978

gctcactaagtgaaagtacttccctaagtaactcaagaagtgcga	CRISPR spacer
gctcactaagtgaaagtacttccctaaataactcaagaagtgcga	Protospacer
***************************.*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

862029 : 948588

105

Staphylococcus_phage(76.04%)

integrase,holin,capsid,terminase,head,tail,plate,portal,tRNA

attL 861963:861980|attR 907549:907566

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
861963:861980	attL	NA	NA	NA	NA
WP_098905429.1\|862029_863079_-\|integrase	site-specific integrase	A0A1W6JNK5	Staphylococcus_phage	1.0e-199	99.4
WP_098905430.1\|863138_864464_-	DUF4041 domain-containing protein	Q708S0	Streptococcus_phage	9.2e-44	71.7
WP_098905431.1\|864480_864942_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4J4F2	uncultured_Caudovirales_phage	1.8e-71	83.0
WP_098905432.1\|864956_865337_-	helix-turn-helix domain-containing protein	A0A2I6PE55	Staphylococcus_phage	1.5e-44	72.8
WP_098905433.1\|865499_865724_+	DUF739 family protein	A0A2I6PE94	Staphylococcus_phage	2.0e-31	87.8
WP_098905434.1\|865746_866193_+	hypothetical protein	A0A1W6JNN0	Staphylococcus_phage	4.0e-60	73.0
WP_002497126.1\|866206_866386_+	hypothetical protein	A0A0N9BAV3	Staphylococcus_phage	4.6e-23	91.5
WP_002497125.1\|866375_866615_-	hypothetical protein	A0A0H3U4W2	Staphylococcus_phage	3.5e-42	98.7
WP_098905435.1\|866663_867437_+	Rha family transcriptional regulator	A1BTY9	Staphylococcus_virus	9.3e-121	87.5
WP_030058915.1\|867472_867706_+	DUF2829 domain-containing protein	A0A0N9SKI8	Staphylococcus_phage	1.1e-37	94.8
WP_098905436.1\|867691_868030_-	hypothetical protein	A0A2H4JGF0	uncultured_Caudovirales_phage	2.6e-51	89.3
WP_023350557.1\|868241_868418_-	hypothetical protein	NA	NA	NA	NA
WP_168995380.1\|868477_868645_+	hypothetical protein	A0A2H4J688	uncultured_Caudovirales_phage	1.2e-20	96.3
WP_168995382.1\|868646_868796_+	hypothetical protein	I6SB01	Staphylococcus_virus	4.7e-05	65.9
WP_049399208.1\|868878_869343_-	hypothetical protein	H9A0R0	Staphylococcus_phage	1.7e-69	85.7
WP_049399210.1\|869398_869608_+	hypothetical protein	A0A2H4J7I0	uncultured_Caudovirales_phage	8.2e-32	97.1
WP_168995383.1\|869621_869768_+	hypothetical protein	A0A2H4J3J6	uncultured_Caudovirales_phage	5.0e-12	75.0
WP_098905437.1\|869754_870033_-	hypothetical protein	A0A2H4JB42	uncultured_Caudovirales_phage	3.6e-35	76.1
WP_098905438.1\|870190_870409_+	hypothetical protein	A0A2H4J3A8	uncultured_Caudovirales_phage	2.1e-17	82.8
WP_098905439.1\|870430_870712_+	chordopoxvirus fusion protein	A0A2H4J6V3	uncultured_Caudovirales_phage	2.3e-05	96.3
WP_098905440.1\|870677_870899_+	DUF2483 family protein	A0A1W6JNQ2	Staphylococcus_phage	3.5e-33	94.5
WP_098905441.1\|870891_871539_+	ERF family protein	A0A1W6JNQ5	Staphylococcus_phage	1.7e-112	96.3
WP_098905442.1\|871535_871943_+	single-stranded DNA-binding protein	G4KNN8	Staphylococcus_phage	2.7e-47	70.1
WP_098905443.1\|871956_872631_+	hypothetical protein	A0A2H4J9L1	uncultured_Caudovirales_phage	4.5e-111	87.4
WP_049399485.1\|872627_872915_+	helix-turn-helix domain-containing protein	A0A1W6JNM9	Staphylococcus_phage	6.4e-43	100.0
WP_049399483.1\|872920_873706_+	conserved phage C-terminal domain-containing protein	A0A1W6JNM1	Staphylococcus_phage	1.2e-128	92.3
WP_098905444.1\|873716_874487_+	ATP-binding protein	A0A1W6JNQ7	Staphylococcus_phage	9.2e-137	94.5
WP_049399495.1\|874480_874636_+	hypothetical protein	A0A1W6JNM0	Staphylococcus_phage	1.8e-20	98.0
WP_098905445.1\|874638_874884_+	hypothetical protein	A0A1W6JNN7	Staphylococcus_phage	1.4e-38	92.6
WP_098905446.1\|875291_875486_+	hypothetical protein	H9A0Z7	Staphylococcus_phage	1.5e-27	96.9
WP_098905447.1\|875486_875834_+	hypothetical protein	H9A0Z8	Staphylococcus_phage	5.2e-55	91.7
WP_023350543.1\|875834_876032_+	hypothetical protein	H9A0Z9	Staphylococcus_phage	1.8e-28	89.2
WP_098905448.1\|876034_876499_+	nucleoside 2-deoxyribosyltransferase	H9A100	Staphylococcus_phage	1.9e-81	95.4
WP_192940987.1\|876495_876669_+	hypothetical protein	A0A0D4DCW7	Staphylococcus_phage	9.5e-18	73.8
WP_098905449.1\|876665_876902_+	hypothetical protein	A0A1J0MFE3	Staphylococcus_phage	5.8e-26	71.8
WP_098905450.1\|876915_877233_+	hypothetical protein	NA	NA	NA	NA
WP_098905451.1\|877222_877441_+	hypothetical protein	A0A2H4JGA4	uncultured_Caudovirales_phage	1.1e-18	62.7
WP_192940988.1\|877433_877586_+	hypothetical protein	NA	NA	NA	NA
WP_098905452.1\|877586_877904_+	MazG-like family protein	A0A2H4J2H9	uncultured_Caudovirales_phage	6.0e-50	94.2
WP_098905453.1\|877959_878127_+	regulator	A0A1W6JQK2	Staphylococcus_phage	7.3e-15	82.7
WP_002436508.1\|878197_878614_+	hypothetical protein	A0A1W6JNV8	Staphylococcus_phage	4.1e-75	98.6
WP_049307394.1\|878891_879233_+	helix-turn-helix domain-containing protein	A0A2H4IYT3	uncultured_Caudovirales_phage	5.8e-43	82.3
WP_023350535.1\|879225_880518_+\|terminase	PBSX family phage terminase large subunit	H9A0U5	Staphylococcus_phage	1.1e-251	95.6
WP_023350534.1\|880531_882028_+\|portal	phage portal protein	A0A1W6JNG9	Staphylococcus_phage	5.0e-272	92.4
WP_098905454.1\|882034_882985_+\|capsid	minor capsid protein	A0A2H4IYR8	uncultured_Caudovirales_phage	7.3e-152	85.8
WP_023350531.1\|883004_883550_+	hypothetical protein	NA	NA	NA	NA
WP_002436512.1\|883542_883686_+	hypothetical protein	A0A1W6JNL8	Staphylococcus_phage	1.8e-06	68.2
WP_098905455.1\|883939_884545_+	DUF4355 domain-containing protein	A0A1W6JNT6	Staphylococcus_phage	3.1e-23	65.5
WP_098905456.1\|884561_885491_+\|capsid	phage major capsid protein	A0A1W6JNP7	Staphylococcus_phage	1.5e-154	87.1
WP_072098683.1\|885511_885781_+	hypothetical protein	A0A1W6JNX0	Staphylococcus_phage	1.6e-24	64.0
WP_049399465.1\|885782_886112_+\|head,tail	phage head-tail connector protein	A0A1W6JNR3	Staphylococcus_phage	1.9e-43	78.9
WP_098905457.1\|886108_886411_+	hypothetical protein	A0A1W6JNQ9	Staphylococcus_phage	2.2e-41	80.0
WP_098905458.1\|886410_886773_+	HK97 gp10 family phage protein	A0A1W6JNQ6	Staphylococcus_phage	6.6e-45	75.7
WP_098905459.1\|886772_887162_+	hypothetical protein	A0A1W6JNQ3	Staphylococcus_phage	4.0e-48	72.1
WP_098905460.1\|887205_887760_+\|tail	phage major tail protein, TP901-1 family	A0A1W6JNU0	Staphylococcus_phage	1.5e-85	88.6
WP_098905461.1\|887821_888181_+\|tail	phage tail protein	A0A1W6JNQ1	Staphylococcus_phage	5.2e-34	60.5
WP_098905462.1\|888222_888567_+	hypothetical protein	A0A1W6JNR9	Staphylococcus_phage	4.1e-44	78.1
WP_098905463.1\|888581_892490_+\|tail	phage tail protein	A0A1W6JNU6	Staphylococcus_phage	1.3e-162	86.0
WP_098905464.1\|892501_893458_+\|tail	phage tail family protein	A0A1W6JNU3	Staphylococcus_phage	6.3e-135	72.4
WP_098905465.1\|893469_894930_+	hypothetical protein	A0A1W6JNY1	Staphylococcus_phage	8.3e-155	70.6
WP_098905466.1\|894932_896819_+	DUF2817 domain-containing protein	H9A0P4	Staphylococcus_phage	1.7e-253	67.3
WP_098905467.1\|896831_898019_+\|plate	BppU family phage baseplate upper protein	H9A0P5	Staphylococcus_phage	5.1e-126	60.1
WP_002475569.1\|898032_898455_+	hypothetical protein	A0A1W6JNR2	Staphylococcus_phage	1.7e-47	62.6
WP_098905468.1\|898435_898834_+	hypothetical protein	A0A1W6JQP0	Staphylococcus_phage	8.1e-20	41.9
WP_098905469.1\|901077_902736_+\|plate	BppU family phage baseplate upper protein	A0A1W6JNS7	Staphylococcus_phage	8.0e-61	67.1
WP_098905470.1\|902747_903092_+	hypothetical protein	A0A2H4JI08	uncultured_Caudovirales_phage	1.5e-22	49.6
WP_023350509.1\|903084_903231_+	XkdX family protein	A0A2H4J8V3	uncultured_Caudovirales_phage	1.8e-17	83.0
WP_098905471.1\|903272_903779_+	hypothetical protein	A1BU74	Staphylococcus_virus	6.2e-65	73.8
WP_098905472.1\|903775_904312_+	hypothetical protein	A1BU75	Staphylococcus_virus	4.6e-10	30.8
WP_002469936.1\|904342_904753_+\|holin	phage holin	A0A2H4J5P8	uncultured_Caudovirales_phage	3.7e-52	75.0
WP_098905473.1\|904727_906191_+	SH3 domain-containing protein	A0A2H4J845	uncultured_Caudovirales_phage	2.1e-262	88.1
WP_087671645.1\|906562_906673_+	hypothetical protein	W5R8J7	Staphylococcus_phage	1.0e-09	88.9
WP_098905475.1\|906674_906860_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	7.5e-21	82.0
WP_023350060.1\|908169_909573_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.4e-170	61.3
907549:907566	attR	NA	NA	NA	NA
WP_023350061.1\|909569_910571_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	3.2e-97	51.5
WP_029625717.1\|910567_910816_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	3.1e-38	90.2
WP_023350062.1\|910886_911360_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.3e-45	55.1
WP_023350063.1\|911340_912126_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	9.5e-105	73.7
WP_002434740.1\|912203_913796_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	1.9e-285	89.8
WP_023350065.1\|914171_915365_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.7e-194	86.1
WP_002434861.1\|915475_916384_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	2.6e-106	82.5
WP_002434834.1\|916539_917379_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.1e-118	71.8
WP_023350066.1\|917456_917813_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	3.2e-07	32.8
WP_023350067.1\|917809_918172_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.1e-38	64.2
WP_002434733.1\|918227_918536_-	hypothetical protein	NA	NA	NA	NA
WP_002434689.1\|918828_919542_+	transaldolase	R9TM64	Synechococcus_phage	1.3e-20	36.5
WP_023350068.1\|919697_920141_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.8e-23	48.3
WP_002434754.1\|920127_920571_-	competence protein ComK	NA	NA	NA	NA
WP_023350069.1\|920590_921061_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	2.1e-30	46.1
WP_002434817.1\|921269_921488_+	hypothetical protein	NA	NA	NA	NA
WP_002434844.1\|921803_922655_+	glucosaminidase domain-containing protein	A0A1J0MFB0	Staphylococcus_phage	4.0e-32	34.5
WP_023350071.1\|922970_924461_+	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	1.4e-19	89.3
WP_002453491.1\|924869_925919_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.3e-138	68.1
WP_030058685.1\|925925_926558_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.5e-89	77.1
WP_023350073.1\|926569_927751_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.9e-179	76.6
WP_002434688.1\|927793_928252_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.1e-60	84.9
WP_023350074.1\|928318_929320_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	3.3e-134	70.9
WP_002434756.1\|929566_930394_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002434669.1\|930807_931209_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_002434676.1\|931286_931850_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	3.5e-69	67.6
WP_002434687.1\|931846_932800_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	7.8e-69	86.8
WP_002434677.1\|932906_934130_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.0e-182	80.9
WP_023350077.1\|934421_936839_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	88.3
WP_002434691.1\|936859_937171_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	7.4e-37	74.8
WP_098905476.1\|937476_948588_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	7.7e-59	35.3

DBSCAN-SWA_2

1065923 : 1077472

uncultured_Mediterranean_phage(57.14%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023350149.1\|1065923_1066928_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	4.9e-05	29.1
WP_002436078.1\|1066929_1067955_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002436105.1\|1067977_1069117_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	6.4e-86	45.3
WP_002436110.1\|1069132_1069396_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.4e-06	44.1
WP_023350151.1\|1069631_1071923_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	7.4e-33	35.2
WP_023350152.1\|1072061_1074335_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.1e-68	29.2
WP_002453394.1\|1074353_1074872_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.3e-29	45.8
WP_098905480.1\|1075282_1077472_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	2.0e-11	37.2

DBSCAN-SWA_3

1659214 : 1667684

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023350476.1\|1659214_1659781_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-30	42.6
WP_037548668.1\|1659777_1660812_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.1e-63	42.4
WP_002435420.1\|1660804_1662289_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.3e-46	32.4
WP_023350478.1\|1662267_1664457_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.9e-137	39.6
WP_023350479.1\|1664449_1665121_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_002435433.1\|1665122_1665383_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_002435397.1\|1665382_1666087_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	H8ZMN3	Synechococcus_phage	3.3e-48	44.2
WP_023350480.1\|1666087_1667215_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002435312.1\|1667201_1667684_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.4e-20	40.8

DBSCAN-SWA_4

1914087 : 1921592

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_037560676.1\|1914087_1915242_-	aminodeoxychorismate synthase component I	A0A0B5J984	Pandoravirus	7.6e-26	35.7
WP_023350678.1\|1915231_1915819_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.1e-36	39.6
WP_023350679.1\|1916124_1916796_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.6e-63	54.0
WP_002433142.1\|1916797_1917217_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_002433181.1\|1917220_1917934_+	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	6.5e-52	43.5
WP_002433459.1\|1918033_1918633_+	hypothetical protein	NA	NA	NA	NA
WP_049326443.1\|1918913_1919351_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_002433139.1\|1919402_1919876_+	DoxX family protein	NA	NA	NA	NA
WP_030059105.1\|1919850_1920540_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.8e-35	35.7
WP_023350683.1\|1920542_1921592_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	1.8e-18	30.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023966

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection