CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023815	Escherichia coli strain IMT16316 chromosome, complete genome	6 crisprs	DEDDh,cas3,WYL,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	2	26	5	0
NZ_CP023816	Escherichia coli strain IMT16316 plasmid pEcIMT16316, complete sequence	0 crisprs	RT	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023815_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023815_1

79941-80088

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP023815_1

>merge|NZ_CP023815|1|79941-80088|CRISPRCasFinder,PILER-CR
CATTTTATCTGCCTGTACGGCAGTGAACATGGTGGGCGGGTGGAGTATGTTACCAGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGCCAACTTTCACAGCCTTTGCAAGATTGTTCCTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP023815|1|1|79941-80088|CRISPRCasFinder
CATTTTATCTGCCTGTACGGCAGTGAAC	ATGGTGGGCGGGTGGAGTATGTTACCAGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP023815|1|1|79949-80088|PILER-CR
CTGCCTGTACGGCAGTGAACATGGTGGG	CGGGTGGAGTATGTTACCAGTGAATTTCTAAG
CTGCCTGTACGGCAGTGAACGCCAACTT	TCACAGCCTTTGCAAGATTGTTCCTTTCTAAG
CTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023815.1\|WP_022645440.1\|91990_93643_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP023815.1\|WP_001043590.1\|74817_76584_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP023815.1\|WP_000520781.1\|82609_82930_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP023815.1\|WP_001295343.1\|67716_68328_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP023815.1\|WP_000228473.1\|72691_73186_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP023815.1\|WP_001400542.1\|86758_87715_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP023815.1\|WP_000410785.1\|83252_83477_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP023815.1\|WP_000599806.1\|87711_89370_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP023815.1\|WP_000886683.1\|64979_66272_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP023815.1\|WP_000537432.1\|73729_74695_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP023815.1\|WP_000934041.1\|80302_82579_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP023815.1\|WP_001202192.1\|76584_78306_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP023815.1\|WP_022645455.1\|68486_72557_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP023815.1\|WP_000488716.1\|89795_90491_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP023815.1\|WP_000746460.1\|85492_86608_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NZ_CP023815.1\|WP_000067771.1\|66362_67706_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP023815.1\|WP_022645441.1\|90948_91848_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP023815.1\|WP_022645453.1\|78347_79052_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP023815.1\|WP_022645444.1\|83549_85496_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP023815.1\|WP_001040187.1\|79336_79555_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954

Protein	Function_ID	Function_description	E-value
NZ_CP023815.1\|WP_022645440.1\|91990_93643_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP023815.1\|WP_001043590.1\|74817_76584_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP023815.1\|WP_000520781.1\|82609_82930_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP023815.1\|WP_001295343.1\|67716_68328_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP023815.1\|WP_000228473.1\|72691_73186_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP023815.1\|WP_001400542.1\|86758_87715_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	1.4029e-131
NZ_CP023815.1\|WP_000410785.1\|83252_83477_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP023815.1\|WP_000599806.1\|87711_89370_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP023815.1\|WP_000886683.1\|64979_66272_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP023815.1\|WP_000537432.1\|73729_74695_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP023815.1\|WP_000934041.1\|80302_82579_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP023815.1\|WP_001202192.1\|76584_78306_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP023815.1\|WP_022645455.1\|68486_72557_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP023815.1\|WP_000488716.1\|89795_90491_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP023815.1\|WP_000746460.1\|85492_86608_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NZ_CP023815.1\|WP_000067771.1\|66362_67706_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP023815.1\|WP_022645441.1\|90948_91848_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.06035e-116
NZ_CP023815.1\|WP_022645453.1\|78347_79052_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.78168e-138
NZ_CP023815.1\|WP_022645444.1\|83549_85496_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP023815.1\|WP_001040187.1\|79336_79555_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49

>NZ_CP023815.1|WP_001040187.1|79336_79555_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP023815.1|WP_022645453.1|78347_79052_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWCEDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNKFWVPRCLFSPQE
>NZ_CP023815.1|WP_001202192.1|76584_78306_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEATLRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP023815.1|WP_001043590.1|74817_76584_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGIDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP023815.1|WP_000537432.1|73729_74695_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP023815.1|WP_000228473.1|72691_73186_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP023815.1|WP_022645455.1|68486_72557_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEEDESHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPTQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAPEQSAQQPYYAPAPEQSVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSAGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFTLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPIAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP023815.1|WP_001295343.1|67716_68328_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP023815.1|WP_000067771.1|66362_67706_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP023815.1|WP_000886683.1|64979_66272_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP023815.1|WP_000934041.1|80302_82579_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP023815.1|WP_000520781.1|82609_82930_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP023815.1|WP_000410785.1|83252_83477_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP023815.1|WP_022645444.1|83549_85496_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVSNPPAIEKVNVAGGTEPVVNTASGWRQFASGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP023815.1|WP_000746460.1|85492_86608_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP023815.1|WP_001400542.1|86758_87715_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP023815.1|WP_000599806.1|87711_89370_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP023815.1|WP_000488716.1|89795_90491_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP023815.1|WP_022645441.1|90948_91848_+|L-lysine-exporter-LysO
MFSGLLIILVPLILGYLIPLRQKAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNYHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP023815.1|WP_022645440.1|91990_93643_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIVLREALKAQCLAVDANAHVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETSKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP023815_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023815_2

1232504-1232653

Orphan

Consensus_repeat	Method
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023815_2

>merge|NZ_CP023815|2|1232504-1232653|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCATGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

>NZ_CP023815|2|2|1232504-1232653|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCA
TGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023815.1\|WP_001059398.1\|1237561_1238065_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP023815.1\|WP_001294573.1\|1226843_1228346_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP023815.1\|WP_000397144.1\|1230955_1232467_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP023815.1\|WP_001353502.1\|1241575_1242028_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP023815.1\|WP_000256670.1\|1242172_1242766_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP023815.1\|WP_001324323.1\|1239869_1241453_-\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP023815.1\|WP_000416392.1\|1233263_1236119_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP023815.1\|WP_000998695.1\|1223554_1224319_+\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NZ_CP023815.1\|WP_001197411.1\|1222499_1223531_+\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_CP023815.1\|WP_000002953.1\|1238110_1238527_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP023815.1\|WP_000896738.1\|1221719_1222283_-\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NZ_CP023815.1\|WP_001318460.1\|1220696_1221716_+\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP023815.1\|WP_001295681.1\|1228506_1229589_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP023815.1\|WP_000079657.1\|1236172_1237369_-\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP023815.1\|WP_000584114.1\|1229588_1230689_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP023815.1\|WP_001128347.1\|1224381_1225701_+\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP023815.1\|WP_000012908.1\|1238688_1239702_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP023815.1\|WP_000786393.1\|1232820_1233264_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP023815.1\|WP_001309159.1\|1225767_1226766_+\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_CP023815.1\|WP_000500725.1\|1242836_1243550_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714

Protein	Function_ID	Function_description	E-value
NZ_CP023815.1\|WP_001059398.1\|1237561_1238065_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.01499e-18
NZ_CP023815.1\|WP_001294573.1\|1226843_1228346_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP023815.1\|WP_000397144.1\|1230955_1232467_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP023815.1\|WP_001353502.1\|1241575_1242028_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	2.33363e-69
NZ_CP023815.1\|WP_000256670.1\|1242172_1242766_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.0374e-10
NZ_CP023815.1\|WP_000416392.1\|1233263_1236119_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP023815.1\|WP_000998695.1\|1223554_1224319_+\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NZ_CP023815.1\|WP_001197411.1\|1222499_1223531_+\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP023815.1\|WP_000002953.1\|1238110_1238527_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP023815.1\|WP_000896738.1\|1221719_1222283_-\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
NZ_CP023815.1\|WP_001318460.1\|1220696_1221716_+\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.21683e-169
NZ_CP023815.1\|WP_001295681.1\|1228506_1229589_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP023815.1\|WP_000079657.1\|1236172_1237369_-\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	9.16901e-151
NZ_CP023815.1\|WP_000584114.1\|1229588_1230689_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP023815.1\|WP_001128347.1\|1224381_1225701_+\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP023815.1\|WP_000012908.1\|1238688_1239702_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP023815.1\|WP_000786393.1\|1232820_1233264_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	3.51045e-66
NZ_CP023815.1\|WP_001309159.1\|1225767_1226766_+\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
NZ_CP023815.1\|WP_000500725.1\|1242836_1243550_+\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	2.9267e-149

>NZ_CP023815.1|WP_000397144.1|1230955_1232467_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP023815.1|WP_000584114.1|1229588_1230689_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP023815.1|WP_001295681.1|1228506_1229589_-|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP023815.1|WP_001294573.1|1226843_1228346_+|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP023815.1|WP_001309159.1|1225767_1226766_+|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_CP023815.1|WP_001128347.1|1224381_1225701_+|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIVFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_CP023815.1|WP_000998695.1|1223554_1224319_+|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NZ_CP023815.1|WP_001197411.1|1222499_1223531_+|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_CP023815.1|WP_000896738.1|1221719_1222283_-|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_CP023815.1|WP_001318460.1|1220696_1221716_+|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADY
>NZ_CP023815.1|WP_000786393.1|1232820_1233264_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTIDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP023815.1|WP_000416392.1|1233263_1236119_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP023815.1|WP_000079657.1|1236172_1237369_-|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSLKGFWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFFAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
>NZ_CP023815.1|WP_001059398.1|1237561_1238065_+|N-acetyltransferase
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>NZ_CP023815.1|WP_000002953.1|1238110_1238527_-|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP023815.1|WP_000012908.1|1238688_1239702_+|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSKLNN
>NZ_CP023815.1|WP_001324323.1|1239869_1241453_-|DNA-binding-protein
MSKISGWNFSQNITSADNCKQKNEDLDTWYVGMNDFARIAGGQNSRSNILSPRAFLEFLAKIFTLGYVDFSKRSNEAGRNMMAHIKSSSYIKNNDGSEIMKFVMNNPEGERADLSKVEIEITLASAFNNGIREGHTVIIFTQPDGSTNRYEGKSFERKDESSLHLITNKILACYQREANKEIARLLNIPQELNNSQDLNNSQVSCKDSVDSTITDLLEKPLNNALLAIRKEHLLLMPYVCNESISYLLGEKGILKEIDDLNAVNNYLLNNKKATDNEINDIKVNLSHILIDSLDDAKVNLTPVIDSILEIFLKFPYINDVRILDWCFNKRMQYFGDSEKIKYACSVINHIDFSRDQSKDFSCDQSKIKIAETLFFNLDKEHYKNSRKLQELIWDKLVAYVNDFNLSNQEKSRLILRLFDDVKLLFNEVPVSILVNDIFLKDFFMKQPDFAKWYFYQLIKKYEGEQLYLNELGYVYGNEEKTNEIVKKHPGYVIKIFEEKMGNELKIRTRMMKILRNGKINIYEYINI
>NZ_CP023815.1|WP_001353502.1|1241575_1242028_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTRDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP023815.1|WP_000256670.1|1242172_1242766_-|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPLARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTLLKE
>NZ_CP023815.1|WP_000500725.1|1242836_1243550_+|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGEALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

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Crispr_ID: NZ_CP023815_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023815_3

2992302-2993736

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

23 spacers

The CRISPR arrays of NZ_CP023815_3

>merge|NZ_CP023815|3|2992302-2993736|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTCAGCGGCAAAAAATACGATCTCGCCGGTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAACCGGCATCAGATATAAGCTGTTCTCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTGACACAATCTCAACTTGCTGAATTAACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATGGCGCTGCCGATCGACAAATGGGACCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCTATCGGGTTCCCTTTTAATGTGATTCCGAATTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTTAACTCCATTTATCAAAGCGCAATTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATAGCTGATAGCTCTCTCAATAATTAACGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCTTAATTACAACGACACCACTGGAAAAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTGGCATCAGATTTCTAAGGAATACGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTAGCCCTATCTCAACGTTCAGGTGTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGAGCCAGTGCTAACGATATCGCGGCCGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGAAATGTGGCCACACCGTGTTAATGTATGGGTGTTCCCCGCGCCAGCGGGGATAAACCATTCCGGCTACTTTTGTTGCTCCCTGCTCATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATTTACTTGGATGCGTCGGACATTGAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCGCGTACATCAACGCAGCAGCAAGCGCATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAGTTCAGGATGCATAATGAAATACCCGACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAACGAAAACGCAGAGCGAGGAACGGATATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGCAACATTTACCGCCGGTCAAAAACAGGACGTGTTCCCCGCGCCAGCGGGGATGAACCA

>NZ_CP023815|3|2|2992302-2993735|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTCAGCGGCAAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	TATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCCTTAATTACAACGACACCACTGGAAAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGCTGGCATCAGATTTCTAAGGAATACGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTTAGCCCTATCTCAACGTTCAGGTGTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGGGAGCCAGTGCTAACGATATCGCGGCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGAAATGTGGCCACACCGTGTTAATGTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	ATTCCGGCTACTTTTGTTGCTCCCTGCTCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATATTTACTTGGATGCGTCGGACATTGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCCGCGTACATCAACGCAGCAGCAAGCGCATA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTAGTTCAGGATGCATAATGAAATACCCGACC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCAACGAAAACGCAGAGCGAGGAACGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACC

>NZ_CP023815|3|3|2992302-2993736|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCAGCGGCAAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCT	ATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTAATTACAACGACACCACTGGAAAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGGCATCAGATTTCTAAGGAATACGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAAATGTGGCCACACCGTGTTAATGTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATTTACTTGGATGCGTCGGACATTGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGCGTACATCAACGCAGCAGCAAGCGCATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGTTCAGGATGCATAATGAAATACCCGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGAAAACGCAGAGCGAGGAACGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACCA

>NZ_CP023815|3|1|2992302-2993736|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCAGCGGCAAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCT	ATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTAATTACAACGACACCACTGGAAAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGGCATCAGATTTCTAAGGAATACGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAAATGTGGCCACACCGTGTTAATGTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATTTACTTGGATGCGTCGGACATTGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGCGTACATCAACGCAGCAGCAAGCGCATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGTTCAGGATGCATAATGAAATACCCGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGAAAACGCAGAGCGAGGAACGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023815.1\|WP_001164562.1\|2995878_2997156_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP023815.1\|WP_000226815.1\|2983056_2985291_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP023815.1\|WP_000210878.1\|2987042_2988680_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP023815.1\|WP_022646048.1\|2990124_2990997_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP023815.1\|WP_000109537.1\|3003567_3003828_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP023815.1\|WP_022646044.1\|3001192_3001972_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP023815.1\|WP_001071641.1\|2986023_2986815_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP023815.1\|WP_000254750.1\|2985616_2985952_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP023815.1\|WP_022646046.1\|2994373_2995852_-\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP023815.1\|WP_000186450.1\|2978894_2981651_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP023815.1\|WP_001130256.1\|3002975_3003551_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP023815.1\|WP_000036723.1\|2988766_2990065_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP023815.1\|WP_012311769.1\|2999877_3001215_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP023815.1\|WP_000581937.1\|2985368_2985617_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP023815.1\|WP_000021342.1\|2997474_2998260_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP023815.1\|WP_001199973.1\|2991290_2991962_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP023815.1\|WP_022646045.1\|2998329_2999784_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP023815.1\|WP_022646042.1\|3003818_3005090_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP023815.1\|WP_001305274.1\|3005167_3005533_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP023815.1\|WP_000046818.1\|2981707_2983009_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291

Protein	Function_ID	Function_description	E-value
NZ_CP023815.1\|WP_001164562.1\|2995878_2997156_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.87501e-29
NZ_CP023815.1\|WP_000226815.1\|2983056_2985291_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP023815.1\|WP_000210878.1\|2987042_2988680_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP023815.1\|WP_022646048.1\|2990124_2990997_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	2.57168e-95
NZ_CP023815.1\|WP_000109537.1\|3003567_3003828_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.07968e-40
NZ_CP023815.1\|WP_022646044.1\|3001192_3001972_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	4.70543e-60
NZ_CP023815.1\|WP_001071641.1\|2986023_2986815_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.52379e-160
NZ_CP023815.1\|WP_000254750.1\|2985616_2985952_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.22533e-74
NZ_CP023815.1\|WP_022646046.1\|2994373_2995852_-\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	8.58462e-109
NZ_CP023815.1\|WP_000186450.1\|2978894_2981651_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP023815.1\|WP_001130256.1\|3002975_3003551_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.33799e-87
NZ_CP023815.1\|WP_000036723.1\|2988766_2990065_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP023815.1\|WP_012311769.1\|2999877_3001215_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.88688e-50
NZ_CP023815.1\|WP_000581937.1\|2985368_2985617_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP023815.1\|WP_000021342.1\|2997474_2998260_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.62537e-140
NZ_CP023815.1\|WP_001199973.1\|2991290_2991962_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP023815.1\|WP_022646045.1\|2998329_2999784_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.79726e-81
NZ_CP023815.1\|WP_022646042.1\|3003818_3005090_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	3.94463e-124
NZ_CP023815.1\|WP_001305274.1\|3005167_3005533_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.64527e-59
NZ_CP023815.1\|WP_000046818.1\|2981707_2983009_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0

>NZ_CP023815.1|WP_001199973.1|2991290_2991962_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP023815.1|WP_022646048.1|2990124_2990997_-|YgcG-family-protein
MRYFILIFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTRKLESIFNNTQVQIAVLIIPTTKDETIEQYATRVFNNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAIIALNNQLTSQHQYSANPSESESASSSDYYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKKASGRSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP023815.1|WP_000036723.1|2988766_2990065_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP023815.1|WP_000210878.1|2987042_2988680_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP023815.1|WP_001071641.1|2986023_2986815_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEAQQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP023815.1|WP_000254750.1|2985616_2985952_+|endoribonuclease-MazF
MVSRYVPDTGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP023815.1|WP_000581937.1|2985368_2985617_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP023815.1|WP_000226815.1|2983056_2985291_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP023815.1|WP_000046818.1|2981707_2983009_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP023815.1|WP_000186450.1|2978894_2981651_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP023815.1|WP_022646046.1|2994373_2995852_-|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNEDSIQSWSNA
>NZ_CP023815.1|WP_001164562.1|2995878_2997156_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>NZ_CP023815.1|WP_000021342.1|2997474_2998260_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP023815.1|WP_022646045.1|2998329_2999784_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDVEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP023815.1|WP_012311769.1|2999877_3001215_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYLGPHVLLGDEVAAATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQATLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP023815.1|WP_022646044.1|3001192_3001972_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEDAVLLETVADLRFAPEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAAIIRKTVAVELPAMQCLHLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>NZ_CP023815.1|WP_001130256.1|3002975_3003551_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISHIVKKIKSAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP023815.1|WP_000109537.1|3003567_3003828_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQWLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDEKTLQQWRYPPSGFGITYRFG
>NZ_CP023815.1|WP_022646042.1|3003818_3005090_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTQALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRACYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL
>NZ_CP023815.1|WP_001305274.1|3005167_3005533_-|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPQGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE

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Crispr_ID: NZ_CP023815_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023815_4

3019283-3020105

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

13 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP023815_4

>merge|NZ_CP023815|4|3019283-3020105|CRISPRCasFinder,CRT,PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCGCAAACGTCAGGCGGAAGTGTTCCGGTCATATAGAGTTCCCCGCGCCAGCGGGGATAAACCGGACCAGTCGGGCCAGACATCGGGGACGCAGAAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCGACCGCCATCGCGCATTTCGTCGAACGTCGGAGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAAAATAATATCCGGCAGTCTGTACGGTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCAACATTTTCCAATATCACCCAGCAATCAATTGAGTTCCCCGCGCCAGCGGGGATAAACCGTCATGAAGGCTTCGATTATTTCTTGATACCTGGAGTTCCCCGCGCCAGCGGGGATAAACCGATTTCATTAATTTTGCAGAGAAGTGTCTCGAAGAGTTCCCCGCGCCAGCGGGGATAAACCGCAATAACACCGGCATTTGTCCACGACAATATTGAGTTCCCCGCGCCAGCGGGGATAAACCAGCGTAAGAAAACAATTTTTTCAGAAAACTAACGAGTTCCCCGCGCCAGCGGGGATAAACCGTACAGTTTCCATAAATTCACCTCGTTTATATAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTATAGCGCCAAAATTGACGAAAGACATGTTGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAAATTAGGCAAATGTGAACACGGCGGCCCCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCATAACCACCCCCATCATGAATATTTTCCGGCGAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP023815|4|4|3019283-3020105|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACGTCAGGCGGAAGTGTTCCGGTCATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCAGTCGGGCCAGACATCGGGGACGCAGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGACCGCCATCGCGCATTTCGTCGAACGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAAATAATATCCGGCAGTCTGTACGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAACATTTTCCAATATCACCCAGCAATCAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGAAGGCTTCGATTATTTCTTGATACCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACACCGGCATTTGTCCACGACAATATT
GAGTTCCCCGCGCCAGCGGGGATAAACCA	GCGTAAGAAAACAATTTTTTCAGAAAACTAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACAGTTTCCATAAATTCACCTCGTTTATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATAGCGCCAAAATTGACGAAAGACATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAACCACCCCCATCATGAATATTTTCCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP023815|4|2|3019283-3020105|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACGTCAGGCGGAAGTGTTCCGGTCATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCAGTCGGGCCAGACATCGGGGACGCAGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGACCGCCATCGCGCATTTCGTCGAACGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAAATAATATCCGGCAGTCTGTACGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAACATTTTCCAATATCACCCAGCAATCAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGAAGGCTTCGATTATTTCTTGATACCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACACCGGCATTTGTCCACGACAATATT
GAGTTCCCCGCGCCAGCGGGGATAAACCA	GCGTAAGAAAACAATTTTTTCAGAAAACTAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACAGTTTCCATAAATTCACCTCGTTTATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATAGCGCCAAAATTGACGAAAGACATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAACCACCCCCATCATGAATATTTTCCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP023815|4|3|3019344-3020105|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCAGTCGGGCCAGACATCGGGGACGCAGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGACCGCCATCGCGCATTTCGTCGAACGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAAATAATATCCGGCAGTCTGTACGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAACATTTTCCAATATCACCCAGCAATCAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGAAGGCTTCGATTATTTCTTGATACCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACACCGGCATTTGTCCACGACAATATT
GAGTTCCCCGCGCCAGCGGGGATAAACCA	GCGTAAGAAAACAATTTTTTCAGAAAACTAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACAGTTTCCATAAATTCACCTCGTTTATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATAGCGCCAAAATTGACGAAAGACATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAACCACCCCCATCATGAATATTTTCCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023815.1\|WP_000517476.1\|3024984_3025296_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP023815.1\|WP_001290706.1\|3007647_3009360_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP023815.1\|WP_022646036.1\|3016697_3017372_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP023815.1\|WP_022646033.1\|3020186_3021224_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP023815.1\|WP_001219242.1\|3026024_3026504_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP023815.1\|WP_022646035.1\|3017973_3018891_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP023815.1\|WP_001295182.1\|3027530_3028292_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP023815.1\|WP_022646031.1\|3026500_3027550_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP023815.1\|WP_000752798.1\|3015108_3015591_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NZ_CP023815.1\|WP_022646032.1\|3022385_3023813_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP023815.1\|WP_000281399.1\|3017358_3017958_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP023815.1\|WP_001246104.1\|3024467_3024791_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP023815.1\|WP_022646038.1\|3013607_3015116_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NZ_CP023815.1\|WP_000246131.1\|3025314_3026025_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP023815.1\|WP_022646034.1\|3018892_3019177_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP023815.1\|WP_022646039.1\|3010526_3013193_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP023815.1\|WP_022646037.1\|3015603_3016695_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP023815.1\|WP_022646040.1\|3009433_3010168_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP023815.1\|WP_001173673.1\|3023812_3024418_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP023815.1\|WP_000372392.1\|3021475_3022384_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
NZ_CP023815.1\|WP_000517476.1\|3024984_3025296_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP023815.1\|WP_001290706.1\|3007647_3009360_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP023815.1\|WP_022646036.1\|3016697_3017372_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	8.37717e-102
NZ_CP023815.1\|WP_022646033.1\|3020186_3021224_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP023815.1\|WP_001219242.1\|3026024_3026504_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP023815.1\|WP_022646035.1\|3017973_3018891_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.75252e-159
NZ_CP023815.1\|WP_001295182.1\|3027530_3028292_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP023815.1\|WP_022646031.1\|3026500_3027550_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP023815.1\|WP_000752798.1\|3015108_3015591_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.51297e-33
NZ_CP023815.1\|WP_022646032.1\|3022385_3023813_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP023815.1\|WP_000281399.1\|3017358_3017958_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	4.3792e-101
NZ_CP023815.1\|WP_001246104.1\|3024467_3024791_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP023815.1\|WP_022646038.1\|3013607_3015116_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NZ_CP023815.1\|WP_000246131.1\|3025314_3026025_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.32778e-121
NZ_CP023815.1\|WP_022646034.1\|3018892_3019177_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.20986e-62
NZ_CP023815.1\|WP_022646039.1\|3010526_3013193_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NZ_CP023815.1\|WP_022646037.1\|3015603_3016695_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.42279e-152
NZ_CP023815.1\|WP_022646040.1\|3009433_3010168_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.62447e-137
NZ_CP023815.1\|WP_001173673.1\|3023812_3024418_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP023815.1\|WP_000372392.1\|3021475_3022384_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>NZ_CP023815.1|WP_022646034.1|3018892_3019177_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSARIREMIWEQISGLAEEGNVVMAWATNTESGFEFQTFGVNRRTPVDLDGLRLVSFLPV
>NZ_CP023815.1|WP_022646035.1|3017973_3018891_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYVLLAKQYGVKWNGRRYDPKDWEKGDTVNQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>NZ_CP023815.1|WP_000281399.1|3017358_3017958_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVITINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>NZ_CP023815.1|WP_022646036.1|3016697_3017372_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCKASDPQKALLNYEPVGGDIYSEESVTGHYLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>NZ_CP023815.1|WP_022646037.1|3015603_3016695_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSDYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKLVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMSELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NZ_CP023815.1|WP_000752798.1|3015108_3015591_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGACAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKPEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NZ_CP023815.1|WP_022646038.1|3013607_3015116_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGEVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPITTFVCGIDLRSTVLLNVLTIPRLQKQFPNELHTENQPTWVKPVKPNESVPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANINFSQADEVIADLRDKLHQLCEMLFNQSEAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>NZ_CP023815.1|WP_022646039.1|3010526_3013193_+|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWEQSVVLQNAFCQNEMLSKQMVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSPGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFKEDAPSNINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPAAPGLTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRMEANASRLFTSPNLILAHGNSRFNHLFQSIKSRAFTEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPEENNSAYPLINWRGVNGAQRFDLLAHSEQLPPRFSIRPEPIYLADMLPDLRMLERMIVAANAGAQVCLICNLVDVAQLCHQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEVPLASVLLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVIKGMDKYESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYLQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRNFSEVVDEDGVLWLEGKQNQDGWIWQGNNIVITYTRDEGMTRVIPANPK
>NZ_CP023815.1|WP_022646040.1|3009433_3010168_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWNNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP023815.1|WP_001290706.1|3007647_3009360_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP023815.1|WP_022646033.1|3020186_3021224_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRSKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIILPLVKKLAKAS
>NZ_CP023815.1|WP_000372392.1|3021475_3022384_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP023815.1|WP_022646032.1|3022385_3023813_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLILIDRLSNVTVGAGMVHEPVSQATAAPSQFSVFELELNALVRRHFPHWGARDLLGDK
>NZ_CP023815.1|WP_001173673.1|3023812_3024418_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP023815.1|WP_001246104.1|3024467_3024791_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP023815.1|WP_000517476.1|3024984_3025296_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP023815.1|WP_000246131.1|3025314_3026025_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP023815.1|WP_001219242.1|3026024_3026504_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP023815.1|WP_022646031.1|3026500_3027550_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHSREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP023815.1|WP_001295182.1|3027530_3028292_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP023815_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023815_5

4173947-4174070

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023815_5

>merge|NZ_CP023815|5|4173947-4174070|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP023815|5|5|4173947-4174070|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023815.1\|WP_001182363.1\|4179389_4180601_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP023815.1\|WP_000098896.1\|4177950_4179099_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP023815.1\|WP_072224394.1\|4168786_4169434_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP023815.1\|WP_001070227.1\|4166033_4166660_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP023815.1\|WP_000534266.1\|4174384_4175641_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP023815.1\|WP_000587589.1\|4170951_4171764_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP023815.1\|WP_000190982.1\|4181642_4182668_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP023815.1\|WP_022645746.1\|4170162_4170948_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP023815.1\|WP_022645749.1\|4166680_4168783_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP023815.1\|WP_000493947.1\|4177269_4177911_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP023815.1\|WP_000269493.1\|4180713_4181646_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP023815.1\|WP_022645745.1\|4171775_4173380_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP023815.1\|WP_000102278.1\|4182966_4183056_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP023815.1\|WP_000212678.1\|4173505_4173811_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP023815.1\|WP_000701040.1\|4183221_4184391_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP023815.1\|WP_000007283.1\|4184536_4185118_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP023815.1\|WP_022645747.1\|4169497_4170166_+\|4Fe-4S-ferredoxin-type-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP023815.1\|WP_001295403.1\|4163399_4164812_-\|pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
NZ_CP023815.1\|WP_001174939.1\|4175681_4177055_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP023815.1\|WP_000528342.1\|4165368_4165578_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359

Protein	Function_ID	Function_description	E-value
NZ_CP023815.1\|WP_001182363.1\|4179389_4180601_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP023815.1\|WP_000098896.1\|4177950_4179099_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP023815.1\|WP_072224394.1\|4168786_4169434_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.85598e-122
NZ_CP023815.1\|WP_001070227.1\|4166033_4166660_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	5.22783e-140
NZ_CP023815.1\|WP_000534266.1\|4174384_4175641_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP023815.1\|WP_000587589.1\|4170951_4171764_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	6.83407e-174
NZ_CP023815.1\|WP_000190982.1\|4181642_4182668_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP023815.1\|WP_022645746.1\|4170162_4170948_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.24741e-162
NZ_CP023815.1\|WP_022645749.1\|4166680_4168783_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP023815.1\|WP_000493947.1\|4177269_4177911_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP023815.1\|WP_000269493.1\|4180713_4181646_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP023815.1\|WP_022645745.1\|4171775_4173380_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP023815.1\|WP_000701040.1\|4183221_4184391_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP023815.1\|WP_000212678.1\|4173505_4173811_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.20156e-64
NZ_CP023815.1\|WP_000007283.1\|4184536_4185118_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP023815.1\|WP_022645747.1\|4169497_4170166_+\|4Fe-4S-ferredoxin-type-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.88774e-75
NZ_CP023815.1\|WP_001295403.1\|4163399_4164812_-\|pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP023815.1\|WP_001174939.1\|4175681_4177055_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP023815.1\|WP_000528342.1\|4165368_4165578_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34

>NZ_CP023815.1|WP_000212678.1|4173505_4173811_-|monooxygenase
MATLLQLHFSFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP023815.1|WP_022645745.1|4171775_4173380_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMIATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHTVTDQALNAEIQKGEYGLLDRVFRLIVEEIKFADPGWSQRIALESLNVDSFAQAWFAERKQRAPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEEIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARKRLSFD
>NZ_CP023815.1|WP_000587589.1|4170951_4171764_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATHPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP023815.1|WP_022645746.1|4170162_4170948_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQNQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYLGVMYGLLPLLLLTGLLCLYPQAVGDMFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP023815.1|WP_022645747.1|4169497_4170166_+|4Fe-4S-ferredoxin-type-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRLGQHLIKKENV
>NZ_CP023815.1|WP_072224394.1|4168786_4169434_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHKDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP023815.1|WP_022645749.1|4166680_4168783_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRAYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPGTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP023815.1|WP_001070227.1|4166033_4166660_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP023815.1|WP_000528342.1|4165368_4165578_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP023815.1|WP_001295403.1|4163399_4164812_-|pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP023815.1|WP_000534266.1|4174384_4175641_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP023815.1|WP_001174939.1|4175681_4177055_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP023815.1|WP_000493947.1|4177269_4177911_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP023815.1|WP_000098896.1|4177950_4179099_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP023815.1|WP_001182363.1|4179389_4180601_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP023815.1|WP_000269493.1|4180713_4181646_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP023815.1|WP_000190982.1|4181642_4182668_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP023815.1|WP_000102278.1|4182966_4183056_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP023815.1|WP_000701040.1|4183221_4184391_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP023815.1|WP_000007283.1|4184536_4185118_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP023815_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023815_6

4869241-4869332

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023815_6

>merge|NZ_CP023815|6|4869241-4869332|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP023815|6|6|4869241-4869332|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023815.1\|WP_001400192.1\|4865872_4866673_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP023815.1\|WP_001120125.1\|4879508_4880201_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP023815.1\|WP_022645494.1\|4870637_4871879_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP023815.1\|WP_022645491.1\|4875064_4875664_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP023815.1\|WP_022645498.1\|4866682_4867273_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP023815.1\|WP_022645500.1\|4863683_4864775_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP023815.1\|WP_001230246.1\|4878206_4879379_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP023815.1\|WP_024175781.1\|4864774_4865467_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP023815.1\|WP_022645496.1\|4867798_4869127_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP023815.1\|WP_022645495.1\|4869755_4870352_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP023815.1\|WP_022645492.1\|4873687_4874608_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP023815.1\|WP_022645497.1\|4867283_4867778_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP023815.1\|WP_022645493.1\|4872171_4873428_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP023815.1\|WP_001571241.1\|4858755_4862718_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP023815.1\|WP_000024560.1\|4874607_4874913_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP023815.1\|WP_022645490.1\|4875660_4878207_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP023815.1\|WP_022645499.1\|4865478_4865865_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP023815.1\|WP_001143120.1\|4870372_4870600_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP023815.1\|WP_001571240.1\|4862757_4863396_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP023815.1\|WP_000979516.1\|4858491_4858701_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023815.1\|WP_001400192.1\|4865872_4866673_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	4.94241e-139
NZ_CP023815.1\|WP_001120125.1\|4879508_4880201_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	1.16516e-137
NZ_CP023815.1\|WP_022645494.1\|4870637_4871879_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP023815.1\|WP_022645498.1\|4866682_4867273_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	4.73341e-131
NZ_CP023815.1\|WP_022645500.1\|4863683_4864775_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP023815.1\|WP_001230246.1\|4878206_4879379_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP023815.1\|WP_024175781.1\|4864774_4865467_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.05349e-168
NZ_CP023815.1\|WP_022645496.1\|4867798_4869127_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP023815.1\|WP_022645495.1\|4869755_4870352_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	3.61568e-133
NZ_CP023815.1\|WP_022645492.1\|4873687_4874608_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP023815.1\|WP_022645497.1\|4867283_4867778_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.51045e-104
NZ_CP023815.1\|WP_022645491.1\|4875064_4875664_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.07144e-83
NZ_CP023815.1\|WP_001571241.1\|4858755_4862718_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP023815.1\|WP_000024560.1\|4874607_4874913_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP023815.1\|WP_022645490.1\|4875660_4878207_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP023815.1\|WP_022645493.1\|4872171_4873428_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP023815.1\|WP_001143120.1\|4870372_4870600_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP023815.1\|WP_001571240.1\|4862757_4863396_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.03073e-152
NZ_CP023815.1\|WP_022645499.1\|4865478_4865865_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	2.63122e-84

>NZ_CP023815.1|WP_022645496.1|4867798_4869127_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVIHQEP
>NZ_CP023815.1|WP_022645497.1|4867283_4867778_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWSVFNENRTLCVNTLSAGQELLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP023815.1|WP_022645498.1|4866682_4867273_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFIRTPEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP023815.1|WP_001400192.1|4865872_4866673_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINAHTRRCFQVREQLLHSGGAQAWVAAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP023815.1|WP_022645499.1|4865478_4865865_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLENIRKVIETAGGSMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP023815.1|WP_024175781.1|4864774_4865467_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQTALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDAQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP023815.1|WP_022645500.1|4863683_4864775_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPSDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVATVPGAEGVLLTFDDFLSGIENFGERIQPLMQCRAHLPALTQEVA
>NZ_CP023815.1|WP_001571240.1|4862757_4863396_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKITGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP023815.1|WP_001571241.1|4858755_4862718_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDTREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPALIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDTLHHQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP023815.1|WP_000979516.1|4858491_4858701_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP023815.1|WP_022645495.1|4869755_4870352_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGANKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP023815.1|WP_001143120.1|4870372_4870600_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP023815.1|WP_022645494.1|4870637_4871879_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKTNRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDTNGFCPMDKFDSVLNEAVK
>NZ_CP023815.1|WP_022645493.1|4872171_4873428_-|YccE-family-protein
MGSNIHGISCTANNYLKQAWHNIKKEHEKNQTYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECESLEKEFEEMQNDNDLSLFMRTLRTNGTEIYSGVSGGITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYGFMEYIENINACDDVFSECCLEDENISVQPKQIHTPGISNLDAGINLSGISFIQSEINKTYELKYAPVDGDGYCLLRAILVLKQHDYSWALGSHKTQKEVYEEFIKIVDKPTIEALVDAAFCDLREDVKTLFGVDLQSDNKIQGVGSHMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFKDNKKLLALDTDASDRIKAVKNFLAVLSDSICSSFIVTSNVASISLGNESFSTDEDLECGYLMNTGNHYDVYLPPELFAQAYKLNNKERNAQLDYLNRYVI
>NZ_CP023815.1|WP_022645492.1|4873687_4874608_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDSQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP023815.1|WP_000024560.1|4874607_4874913_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP023815.1|WP_022645491.1|4875064_4875664_-|molecular-chaperone-TorD
MTTLTAPQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENRIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGSVPARRIDSLRQKTLTALWEWLPEFAARCRQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP023815.1|WP_022645490.1|4875660_4878207_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGMARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSTPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYSGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP023815.1|WP_001230246.1|4878206_4879379_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASAVKVIKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP023815.1|WP_001120125.1|4879508_4880201_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP023815_3	3.17\|2993308\|33\|NZ_CP023815\|PILER-CR	2993308-2993340	33	NZ_CP023815.1	2972470-2972502	1	0.97
NZ_CP023815_3	3.40\|2993309\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2993309-2993340	32	NZ_CP023815.1	2972470-2972501	1	0.969

1. spacer 3.17|2993308|33|NZ_CP023815|PILER-CR matches to position: 2972470-2972502, mismatch: 1, identity: 0.97

attccggctacttttgttgctccctgctcatcc	CRISPR spacer
attccagctacttttgttgctccctgctcatcc	Protospacer
*****.***************************

2. spacer 3.40|2993309|32|NZ_CP023815|CRISPRCasFinder,CRT matches to position: 2972470-2972501, mismatch: 1, identity: 0.969

ttccggctacttttgttgctccctgctcatcc	CRISPR spacer
ttccagctacttttgttgctccctgctcatcc	Protospacer
****.***************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023815_6	6.1\|4869267\|40\|NZ_CP023815\|CRISPRCasFinder	4869267-4869306	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP023815_5	5.1\|4173990\|38\|NZ_CP023815\|CRISPRCasFinder	4173990-4174027	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP023815_4	4.10\|3019861\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019861-3019892	32	MF547662	Clostridioides phage LIBA6276, complete genome	37369-37400	4	0.875
NZ_CP023815_4	4.10\|3019861\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019861-3019892	32	MF547663	Clostridioides phage LIBA2945, complete genome	37369-37400	4	0.875
NZ_CP023815_4	4.2\|3019373\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019373-3019404	32	MK972713	Salmonella phage SW5, complete genome	27687-27718	5	0.844
NZ_CP023815_4	4.2\|3019373\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019373-3019404	32	MK972714	Salmonella phage SW3, complete genome	27909-27940	5	0.844
NZ_CP023815_4	4.2\|3019373\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019373-3019404	32	NC_049460	Salmonella phage SI7, complete genome	18129-18160	5	0.844
NZ_CP023815_4	4.10\|3019861\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019861-3019892	32	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	83504-83535	5	0.844
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1203814-1203845	6	0.812
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1167510-1167541	6	0.812
NZ_CP023815_3	3.27\|2992514\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992514-2992545	32	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	373536-373567	7	0.781
NZ_CP023815_4	4.1\|3019312\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	3019312-3019343	32	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	17850-17881	7	0.781
NZ_CP023815_4	4.1\|3019312\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	3019312-3019343	32	NC_049393	Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1	17628-17659	7	0.781
NZ_CP023815_4	4.1\|3019312\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	3019312-3019343	32	NC_049394	Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1	17890-17921	7	0.781
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1175642-1175673	7	0.781
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	405764-405795	8	0.75
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	354033-354064	8	0.75
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	NZ_CP053712	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence	91487-91518	8	0.75
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	405764-405795	8	0.75
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	354033-354064	8	0.75
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	NZ_CP053712	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence	91487-91518	8	0.75
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	405764-405795	8	0.75
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	354033-354064	8	0.75
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	NZ_CP053712	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence	91487-91518	8	0.75
NZ_CP023815_3	3.34\|2992941\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992941-2992972	32	NC_013085	Synechococcus phage S-RSM4, complete genome	75536-75567	8	0.75
NZ_CP023815_3	3.34\|2992941\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992941-2992972	32	FM207411	Synechococcus phage S-RSM4 complete genome	75536-75567	8	0.75
NZ_CP023815_3	3.38\|2993186\|33\|NZ_CP023815\|CRISPRCasFinder,CRT	2993186-2993218	33	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	413541-413573	8	0.758
NZ_CP023815_3	3.43\|2993492\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2993492-2993523	32	MN855615	Siphoviridae sp. isolate 320, complete genome	7076-7107	8	0.75
NZ_CP023815_3	3.43\|2993492\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2993492-2993523	32	NC_034248	Rhizobium phage RHEph10, complete genome	31444-31475	8	0.75
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	NC_031109	Gordonia phage Jumbo, complete genome	25391-25422	8	0.75
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	398774-398805	8	0.75
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	565533-565564	8	0.75
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	63515-63546	8	0.75
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	350647-350678	8	0.75
NZ_CP023815_4	4.4\|3019495\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019495-3019526	32	CP022610	Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence	10541-10572	8	0.75
NZ_CP023815_4	4.5\|3019556\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019556-3019587	32	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	57083-57114	8	0.75
NZ_CP023815_4	4.6\|3019617\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019617-3019648	32	MN694482	Marine virus AFVG_250M11, complete genome	1728-1759	8	0.75
NZ_CP023815_4	4.8\|3019739\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019739-3019770	32	NZ_CP008818	Ochrobactrum anthropi strain OAB plasmid 2, complete sequence	52227-52258	8	0.75
NZ_CP023815_4	4.8\|3019739\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019739-3019770	32	NC_009671	Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence	23638-23669	8	0.75
NZ_CP023815_1	1.1\|79969\|32\|NZ_CP023815\|CRISPRCasFinder	79969-80000	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_CP023815_1	1.1\|79969\|32\|NZ_CP023815\|CRISPRCasFinder	79969-80000	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_CP023815_1	1.1\|79969\|32\|NZ_CP023815\|CRISPRCasFinder	79969-80000	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_CP023815_1	1.3\|79977\|32\|NZ_CP023815\|PILER-CR	79977-80008	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_CP023815_1	1.3\|79977\|32\|NZ_CP023815\|PILER-CR	79977-80008	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_CP023815_1	1.3\|79977\|32\|NZ_CP023815\|PILER-CR	79977-80008	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_CP023815_3	3.15\|2993185\|34\|NZ_CP023815\|PILER-CR	2993185-2993218	34	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	413540-413573	9	0.735
NZ_CP023815_3	3.20\|2993491\|33\|NZ_CP023815\|PILER-CR	2993491-2993523	33	MN855615	Siphoviridae sp. isolate 320, complete genome	7075-7107	9	0.727
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	JX469828	Uncultured bacterium plasmid pRSB223, complete sequence	47585-47616	9	0.719
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	JX469829	Uncultured bacterium plasmid pB1, complete sequence	23183-23214	9	0.719
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	393203-393234	9	0.719
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	NC_008766	Acidovorax sp. JS42 plasmid pAOVO02, complete sequence	3158-3189	9	0.719
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	569059-569090	9	0.719
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	NZ_MN366361	Bacterium plasmid pALTS33, complete sequence	54575-54606	9	0.719
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	JX469828	Uncultured bacterium plasmid pRSB223, complete sequence	47585-47616	9	0.719
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	JX469829	Uncultured bacterium plasmid pB1, complete sequence	23183-23214	9	0.719
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	393203-393234	9	0.719
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	NC_008766	Acidovorax sp. JS42 plasmid pAOVO02, complete sequence	3158-3189	9	0.719
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	569059-569090	9	0.719
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	NZ_MN366361	Bacterium plasmid pALTS33, complete sequence	54575-54606	9	0.719
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	JX469828	Uncultured bacterium plasmid pRSB223, complete sequence	47585-47616	9	0.719
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	JX469829	Uncultured bacterium plasmid pB1, complete sequence	23183-23214	9	0.719
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	393203-393234	9	0.719
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	NC_008766	Acidovorax sp. JS42 plasmid pAOVO02, complete sequence	3158-3189	9	0.719
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	569059-569090	9	0.719
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	NZ_MN366361	Bacterium plasmid pALTS33, complete sequence	54575-54606	9	0.719
NZ_CP023815_3	3.35\|2993002\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2993002-2993033	32	MW084976	Bacillus phage Kirov, complete genome	56770-56801	9	0.719
NZ_CP023815_3	3.41\|2993370\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2993370-2993401	32	NZ_CP016721	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence	30466-30497	9	0.719
NZ_CP023815_3	3.41\|2993370\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2993370-2993401	32	NZ_CP016727	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence	30464-30495	9	0.719
NZ_CP023815_3	3.45\|2993614\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2993614-2993645	32	MK448690	Streptococcus phage Javan169, complete genome	9831-9862	9	0.719
NZ_CP023815_3	3.45\|2993614\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2993614-2993645	32	MK448854	Streptococcus phage Javan146, complete genome	11811-11842	9	0.719
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	555186-555217	9	0.719
NZ_CP023815_4	4.3\|3019434\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019434-3019465	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	471692-471723	9	0.719
NZ_CP023815_4	4.5\|3019556\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019556-3019587	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	137043-137074	9	0.719
NZ_CP023815_4	4.7\|3019678\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019678-3019709	32	MT446414	UNVERIFIED: Escherichia virus TH43, complete genome	38100-38131	9	0.719
NZ_CP023815_4	4.9\|3019800\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019800-3019831	32	MN812211	Flavobacterium phage vB_FspS_laban6-1, complete genome	21752-21783	9	0.719
NZ_CP023815_4	4.9\|3019800\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019800-3019831	32	NZ_CP012534	Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence	26937-26968	9	0.719
NZ_CP023815_4	4.10\|3019861\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019861-3019892	32	MN693584	Marine virus AFVG_25M163, complete genome	29591-29622	9	0.719
NZ_CP023815_4	4.10\|3019861\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019861-3019892	32	MN103543	Pseudomonas phage vB_PaeM_PS119XW, complete genome	258501-258532	9	0.719
NZ_CP023815_4	4.10\|3019861\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019861-3019892	32	MK599315	Pseudomonas phage PA1C, complete genome	257887-257918	9	0.719
NZ_CP023815_3	3.31\|2992758\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992758-2992789	32	NC_004929	Ruegeria sp. PR1b plasmid pSD20, complete sequence	67373-67404	10	0.688
NZ_CP023815_3	3.32\|2992819\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992819-2992850	32	NC_004929	Ruegeria sp. PR1b plasmid pSD20, complete sequence	67373-67404	10	0.688
NZ_CP023815_3	3.33\|2992880\|32\|NZ_CP023815\|CRISPRCasFinder,CRT	2992880-2992911	32	NC_004929	Ruegeria sp. PR1b plasmid pSD20, complete sequence	67373-67404	10	0.688
NZ_CP023815_4	4.9\|3019800\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019800-3019831	32	NZ_KX711616	Bacillus subtilis strain 72 plasmid pBS72, complete sequence	1474-1505	10	0.688
NZ_CP023815_4	4.9\|3019800\|32\|NZ_CP023815\|CRISPRCasFinder,CRT,PILER-CR	3019800-3019831	32	NC_023026	Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence	2981-3012	11	0.656

1. spacer 6.1|4869267|40|NZ_CP023815|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 5.1|4173990|38|NZ_CP023815|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 4.10|3019861|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 4, identity: 0.875

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cttataaaa	Protospacer
*** ******************* .***** *

4. spacer 4.10|3019861|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 4, identity: 0.875

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cttataaaa	Protospacer
*** ******************* .***** *

5. spacer 4.2|3019373|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 5, identity: 0.844

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

6. spacer 4.2|3019373|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 5, identity: 0.844

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

7. spacer 4.2|3019373|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 5, identity: 0.844

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

8. spacer 4.10|3019861|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cctataaaa	Protospacer
*** ******************* ..**** *

9. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 6, identity: 0.812

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgcggccatcgcgcagttcgtcgaacgccg	Protospacer
*  .* *********** ***********.**

10. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.812

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgttg	Protospacer
 ** .******************* * ***.*

11. spacer 3.27|2992514|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 7, identity: 0.781

aatggcgctgccgatcgacaaatgggacctgg-	CRISPR spacer
gatggcgatgccgatggacaaat-gcacatgct	Protospacer
.****** ******* ******* * ** **

12. spacer 4.1|3019312|32|NZ_CP023815|CRISPRCasFinder,CRT matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

13. spacer 4.1|3019312|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_049393 (Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

14. spacer 4.1|3019312|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_049394 (Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

15. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.781

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgctg	Protospacer
 ** .******************* * **..*

16. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

17. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

18. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

19. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

20. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

21. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

22. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

23. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

24. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

25. spacer 3.34|2992941|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 8, identity: 0.75

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

26. spacer 3.34|2992941|32|NZ_CP023815|CRISPRCasFinder,CRT matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 8, identity: 0.75

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

27. spacer 3.38|2993186|33|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 8, identity: 0.758

cgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
ggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
 * * * ***.** *****************

28. spacer 3.43|2993492|32|NZ_CP023815|CRISPRCasFinder,CRT matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 8, identity: 0.75

gccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
ccactgcccatcaaagcaccagcaagcgcata	Protospacer
 *  .*. ****** *** *************

29. spacer 3.43|2993492|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_034248 (Rhizobium phage RHEph10, complete genome) position: , mismatch: 8, identity: 0.75

gccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
accgcggccatcaacgcagcagcataaggaga	Protospacer
.*****  **************** . * * *

30. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NC_031109 (Gordonia phage Jumbo, complete genome) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gacaataccatcgcggattttgtcgaacgtcg	Protospacer
   * ..******** ****.***********

31. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

32. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

33. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgacgccgtcgcgcatttcgtcgaccgcct	Protospacer
*  . ****.**************** **.*

34. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gccgccgccatcgcgcaattcggcgaatatgg	Protospacer
 * .************* **** ****..* *

35. spacer 4.4|3019495|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to CP022610 (Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

caaaaaaataatatccggcagtctgtacggta	CRISPR spacer
aagaaaaatcatatccggcagtctttagcgag	Protospacer
 *.****** ************** **  * .

36. spacer 4.5|3019556|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

-caacattttccaatatcacccagcaatcaatt	CRISPR spacer
gtaac-ttttctaatatcacccagcactccggg	Protospacer
 .*** *****.************** ** .

37. spacer 4.6|3019617|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MN694482 (Marine virus AFVG_250M11, complete genome) position: , mismatch: 8, identity: 0.75

tcatgaaggcttcgattatttcttgatacctg	CRISPR spacer
tcattaaggcttcgattttttctagtttagtt	Protospacer
**** ************ ***** * *   *

38. spacer 4.8|3019739|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008818 (Ochrobactrum anthropi strain OAB plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

-caataacaccggcatttgtccacgacaatatt	CRISPR spacer
tcggcgacg-cggcatttgtccacgacacaatt	Protospacer
 *....**. ******************  ***

39. spacer 4.8|3019739|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NC_009671 (Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence) position: , mismatch: 8, identity: 0.75

-caataacaccggcatttgtccacgacaatatt	CRISPR spacer
tcggcgacg-cggcatttgtccacgacacaatt	Protospacer
 *....**. ******************  ***

40. spacer 1.1|79969|32|NZ_CP023815|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

41. spacer 1.1|79969|32|NZ_CP023815|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

42. spacer 1.1|79969|32|NZ_CP023815|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

43. spacer 1.3|79977|32|NZ_CP023815|PILER-CR matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

44. spacer 1.3|79977|32|NZ_CP023815|PILER-CR matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

45. spacer 1.3|79977|32|NZ_CP023815|PILER-CR matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

46. spacer 3.15|2993185|34|NZ_CP023815|PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.735

gcgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
cggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
  * * * ***.** *****************

47. spacer 3.20|2993491|33|NZ_CP023815|PILER-CR matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 9, identity: 0.727

ggccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
accactgcccatcaaagcaccagcaagcgcata	Protospacer
. *  .*. ****** *** *************

48. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to JX469828 (Uncultured bacterium plasmid pRSB223, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

49. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to JX469829 (Uncultured bacterium plasmid pB1, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

50. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
gccgggcagcgcccggcgcgcctcagccatca	Protospacer
 **.* ******************  . *.*

51. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_008766 (Acidovorax sp. JS42 plasmid pAOVO02, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

52. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
cggagcccgcgcccggcgcgccgcttcacatg	Protospacer
*  **** ************** ***.*  .

53. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

54. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to JX469828 (Uncultured bacterium plasmid pRSB223, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

55. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to JX469829 (Uncultured bacterium plasmid pB1, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

56. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
gccgggcagcgcccggcgcgcctcagccatca	Protospacer
 **.* ******************  . *.*

57. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_008766 (Acidovorax sp. JS42 plasmid pAOVO02, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

58. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
cggagcccgcgcccggcgcgccgcttcacatg	Protospacer
*  **** ************** ***.*  .

59. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

60. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to JX469828 (Uncultured bacterium plasmid pRSB223, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

61. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to JX469829 (Uncultured bacterium plasmid pB1, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

62. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
gccgggcagcgcccggcgcgcctcagccatca	Protospacer
 **.* ******************  . *.*

63. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_008766 (Acidovorax sp. JS42 plasmid pAOVO02, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

64. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
cggagcccgcgcccggcgcgccgcttcacatg	Protospacer
*  **** ************** ***.*  .

65. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

66. spacer 3.35|2993002|32|NZ_CP023815|CRISPRCasFinder,CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.719

ttcgccaggtgttttcttttcccggtcagtca	CRISPR spacer
aattccaagtgttttcttttcccagtctataa	Protospacer
  . ***.***************.*** .* *

67. spacer 3.41|2993370|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP016721 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence) position: , mismatch: 9, identity: 0.719

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

68. spacer 3.41|2993370|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NZ_CP016727 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence) position: , mismatch: 9, identity: 0.719

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

69. spacer 3.45|2993614|32|NZ_CP023815|CRISPRCasFinder,CRT matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 9, identity: 0.719

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

70. spacer 3.45|2993614|32|NZ_CP023815|CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 9, identity: 0.719

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

71. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tcgaccggcatcgcgcagttcgtcgctgagag	Protospacer
.****** ********* *******   .  *

72. spacer 4.3|3019434|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gagaccggcatcgcgcatttcctcgagcacat	Protospacer
  ***** ************* ****.*..

73. spacer 4.5|3019556|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caacattttccaatatcacccagcaatcaatt	CRISPR spacer
gattgccttccaatatcagccagctatcaaat	Protospacer
 * ....*********** ***** ***** *

74. spacer 4.7|3019678|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MT446414 (UNVERIFIED: Escherichia virus TH43, complete genome) position: , mismatch: 9, identity: 0.719

atttcattaattttgcagagaagtgtctcgaa	CRISPR spacer
atttcatcaactttgcagagaaggaaatttat	Protospacer
*******.**.************ .  *. *

75. spacer 4.9|3019800|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 9, identity: 0.719

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
aaataagaaaacaattttttcttaaaaaagat	Protospacer
. .******************  ****  .*.

76. spacer 4.9|3019800|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012534 (Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtaagaaaacaattttttcag---aaaactaac	CRISPR spacer
gcgtaagaaaacagtttttccagttccagatg---	Protospacer
*************.*****.***    *.*.

77. spacer 4.10|3019861|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MN693584 (Marine virus AFVG_25M163, complete genome) position: , mismatch: 9, identity: 0.719

tacagtttccataaattcacctcgtttatata	CRISPR spacer
ggggatatctataaactcacctcgtttatatt	Protospacer
 . ..* **.*****.***************

78. spacer 4.10|3019861|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 9, identity: 0.719

tacagtttccataaattcacctcgtttatata	CRISPR spacer
cgcttcttccatacattcacctcggttatgga	Protospacer
..*  .******* ********** ****. *

79. spacer 4.10|3019861|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 9, identity: 0.719

tacagtttccataaattcacctcgtttatata	CRISPR spacer
cgcttcttccatacattcacctcggttatgga	Protospacer
..*  .******* ********** ****. *

80. spacer 3.31|2992758|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_004929 (Ruegeria sp. PR1b plasmid pSD20, complete sequence) position: , mismatch: 10, identity: 0.688

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgcctgcgcccggcgcgcctgccagaggg	Protospacer
*** *** *************** .. .*

81. spacer 3.32|2992819|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_004929 (Ruegeria sp. PR1b plasmid pSD20, complete sequence) position: , mismatch: 10, identity: 0.688

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgcctgcgcccggcgcgcctgccagaggg	Protospacer
*** *** *************** .. .*

82. spacer 3.33|2992880|32|NZ_CP023815|CRISPRCasFinder,CRT matches to NC_004929 (Ruegeria sp. PR1b plasmid pSD20, complete sequence) position: , mismatch: 10, identity: 0.688

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgcctgcgcccggcgcgcctgccagaggg	Protospacer
*** *** *************** .. .*

83. spacer 4.9|3019800|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX711616 (Bacillus subtilis strain 72 plasmid pBS72, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
gacaaagaaaacaatcttttaagaaaagcttt	Protospacer
*   ***********.**** ****** .  .

84. spacer 4.9|3019800|32|NZ_CP023815|CRISPRCasFinder,CRT,PILER-CR matches to NC_023026 (Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence) position: , mismatch: 11, identity: 0.656

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
acgaaagaaaacaactttttcagagtggcgtt	Protospacer
.** **********.*********. . .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

64979 : 153435

Salmonella_phage(61.82%)

tRNA,protease,portal,tail,terminase,capsid,head,lysis,plate,integrase

attL 119131:119157|attR 153510:153536

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000886683.1\|64979_66272_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067771.1\|66362_67706_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	41.0
WP_001295343.1\|67716_68328_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_022645455.1\|68486_72557_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|72691_73186_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537432.1\|73729_74695_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	44.6
WP_001043590.1\|74817_76584_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001202192.1\|76584_78306_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	4.0e-15	31.2
WP_022645453.1\|78347_79052_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|79336_79555_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000934041.1\|80302_82579_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_000520781.1\|82609_82930_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000410785.1\|83252_83477_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_022645444.1\|83549_85496_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	6.5e-38	40.1
WP_000746460.1\|85492_86608_-	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_001400542.1\|86758_87715_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_000599806.1\|87711_89370_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_000488716.1\|89795_90491_+	aquaporin Z	NA	NA	NA	NA
WP_022645441.1\|90948_91848_+	L-lysine exporter LysO	NA	NA	NA	NA
WP_022645440.1\|91990_93643_+	hydroxylamine reductase	NA	NA	NA	NA
WP_000178691.1\|93654_94623_+	NADH oxidoreductase	NA	NA	NA	NA
WP_000815366.1\|94755_96474_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	6.8e-31	24.0
WP_000566375.1\|96510_97512_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_022645439.1\|97522_98953_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_001305933.1\|99051_100065_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001255167.1\|100061_100892_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
WP_001160731.1\|100888_101212_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001270657.1\|102783_103299_+	lipoprotein	NA	NA	NA	NA
WP_000027205.1\|103516_104245_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
WP_000756575.1\|104262_104994_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001001702.1\|105000_105717_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000464489.1\|105716_106385_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_001295905.1\|106610_107342_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001149713.1\|107370_108498_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	27.6
WP_000389260.1\|108538_109027_-	YbjO family protein	NA	NA	NA	NA
WP_001061658.1\|109086_109932_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000105436.1\|109928_110882_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_000996007.1\|110891_112025_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	1.4e-29	34.0
WP_000126075.1\|112119_113232_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000203025.1\|113582_114059_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_000684321.1\|114146_115049_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
WP_000681108.1\|116653_117031_-	hypothetical protein	NA	NA	NA	NA
WP_098944878.1\|117300_118986_+	aspartate:alanine antiporter	NA	NA	NA	NA
119131:119157	attL	NA	NA	NA	NA
WP_000972391.1\|119221_119440_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_022645435.1\|119530_120631_-	phage late control D family protein	E5G6Q3	Salmonella_phage	1.0e-176	85.2
WP_022645434.1\|120627_121113_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.6e-65	79.4
WP_022645433.1\|121109_124187_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	69.3
WP_000763311.1\|124179_124299_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_022645432.1\|124313_124616_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.5e-39	88.0
WP_001207660.1\|124670_125186_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_000046146.1\|125195_126368_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	7.8e-204	90.0
WP_022645431.1\|126501_127104_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	3.7e-93	84.4
WP_022645430.1\|127103_128645_-\|tail	phage tail collar protein	M1TAS6	Escherichia_phage	7.6e-199	71.2
WP_022645429.1\|128641_129247_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.2e-110	92.5
WP_022645428.1\|129239_130148_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	3.5e-143	90.7
WP_000177597.1\|130134_130494_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.8e-51	85.7
WP_000993764.1\|130490_131069_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	7.2e-94	86.5
WP_022645427.1\|131172_131979_+	hypothetical protein	NA	NA	NA	NA
WP_021522006.1\|131920_132367_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.0e-60	84.2
WP_001595569.1\|132359_132791_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	9.9e-72	93.7
WP_022645426.1\|132886_133315_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.9e-46	75.2
WP_022645425.1\|133311_133689_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	8.8e-16	40.0
WP_086555589.1\|133690_134164_-	lysozyme	E5G6N1	Salmonella_phage	8.3e-80	90.4
WP_000171568.1\|134183_134399_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868175.1\|134402_134606_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000673523.1\|134605_135070_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_021534472.1\|135165_135816_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	9.6e-111	95.8
WP_000742503.1\|135819_136878_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	8.4e-181	93.1
WP_022645423.1\|136894_137728_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.8e-123	91.0
WP_022645422.1\|137870_139637_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_022645421.1\|139636_140671_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	2.3e-167	85.5
WP_022645420.1\|140707_142489_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_022645419.1\|143022_144081_+	hypothetical protein	NA	NA	NA	NA
WP_001217562.1\|144255_144489_-	DinI family protein	E5G6M1	Salmonella_phage	2.3e-35	98.7
WP_001154434.1\|144499_144688_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_098944879.1\|144841_147256_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.8
WP_000104157.1\|147252_148110_-	DNA adenine methylase	E5G6L8	Salmonella_phage	4.1e-162	98.2
WP_001399246.1\|148106_148334_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	7.8e-36	98.7
WP_001244228.1\|148333_148567_-	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-33	98.7
WP_001311552.1\|148634_148976_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_000956182.1\|148939_149140_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
WP_022645417.1\|149147_149657_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
WP_000188448.1\|149689_149911_-	hypothetical protein	NA	NA	NA	NA
WP_022645416.1\|150006_150603_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-39	42.9
WP_022645415.1\|150623_152300_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	9.8e-83	66.8
WP_001595551.1\|152382_153435_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.8e-104	55.8
153510:153536	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1455719 : 1501914

Burkholderia_phage(31.58%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298868.1\|1455719_1456757_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_022646425.1\|1457118_1458123_-	DUF2713 family protein	NA	NA	NA	NA
WP_000416263.1\|1458440_1458956_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001296638.1\|1458997_1459207_-	CsbD family protein	NA	NA	NA	NA
WP_001361471.1\|1459322_1460648_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646078.1\|1460720_1461329_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002907.1\|1461438_1461807_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017354.1\|1461977_1464401_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455227.1\|1464555_1465428_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_001308201.1\|1465440_1465938_-	chorismate lyase	NA	NA	NA	NA
WP_022646424.1\|1466160_1467741_-	SopA family protein	NA	NA	NA	NA
WP_000783444.1\|1467968_1468889_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973665.1\|1469131_1470472_-	maltoporin LamB	NA	NA	NA	NA
WP_000179165.1\|1470543_1471659_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	4.3e-18	31.7
WP_000695389.1\|1472023_1473214_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_022646423.1\|1473367_1474912_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252058.1\|1474926_1475817_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000202902.1\|1475910_1476321_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_001295279.1\|1476534_1476813_+	periplasmic protein	NA	NA	NA	NA
WP_022646422.1\|1476859_1478956_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_022646421.1\|1478955_1479693_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_001296632.1\|1479689_1480328_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_000757333.1\|1480441_1480684_-	polysaccharide production threonine-rich protein	NA	NA	NA	NA
WP_022646420.1\|1481038_1482688_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_022646419.1\|1483212_1484562_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000619864.1\|1484616_1484964_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	2.2e-21	49.0
WP_022646418.1\|1485501_1485789_+	hypothetical protein	Q6QIC8	Burkholderia_phage	3.9e-16	48.6
WP_000266448.1\|1485791_1486397_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	3.3e-57	57.1
WP_000777272.1\|1486409_1486724_+	membrane protein	Q5ZQY8	Pseudomonas_phage	9.2e-19	43.2
WP_022646417.1\|1486868_1487324_+	hypothetical protein	NA	NA	NA	NA
WP_000875310.1\|1487320_1487518_+	hypothetical protein	NA	NA	NA	NA
WP_022646416.1\|1487507_1488932_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	7.0e-191	70.2
WP_000907502.1\|1488931_1489456_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	69.0
WP_022646415.1\|1489506_1489824_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_015674804.1\|1489783_1489912_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_022646414.1\|1490013_1492389_+	hypothetical protein	A4JWL0	Burkholderia_virus	1.0e-56	26.0
WP_022646413.1\|1492388_1493342_+	hypothetical protein	A4JWL1	Burkholderia_virus	3.3e-35	50.8
WP_001269711.1\|1493341_1493551_+	membrane protein	A4JWL2	Burkholderia_virus	1.3e-16	60.3
WP_022646412.1\|1493538_1494579_+	phage late control D family protein	A4JWL3	Burkholderia_virus	2.0e-73	45.1
WP_000679403.1\|1494588_1495290_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	6.4e-12	36.3
WP_022646411.1\|1495388_1495748_+	hypothetical protein	Q6QIA0	Burkholderia_phage	1.1e-34	64.2
WP_022646410.1\|1495738_1496854_+	hypothetical protein	Q6QI99	Burkholderia_phage	2.0e-100	51.7
WP_098944904.1\|1496846_1497563_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	4.1e-22	37.2
WP_022646408.1\|1497565_1499176_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	3.8e-84	39.1
WP_022646406.1\|1500653_1501109_+	hypothetical protein	F6MIM0	Haemophilus_phage	6.6e-26	42.7
WP_022646405.1\|1501122_1501914_-	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	2.0e-46	45.1

DBSCAN-SWA_3

3253874 : 3288329

Escherichia_phage(51.52%)

terminase,tail,integrase

attL 3236776:3236791|attR 3275256:3275271

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3236776:3236791	attL	NA	NA	NA	NA
WP_001299507.1\|3253874_3255341_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.3e-88	39.1
WP_000138270.1\|3255409_3256987_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_098944944.1\|3257179_3258430_+\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	8.0e-239	99.3
WP_001077943.1\|3258433_3258628_-	DUF1382 family protein	G9L698	Escherichia_phage	2.8e-26	96.9
WP_001617199.1\|3258624_3259275_-	hypothetical protein	A0A0F6TJC3	Escherichia_coli_O157_typing_phage	3.4e-124	97.2
WP_001335975.1\|3259267_3259519_-	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	3.1e-41	100.0
WP_000675390.1\|3259676_3259925_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
WP_000063818.1\|3259974_3260856_-	recombinase RecT	G9L6A2	Escherichia_phage	2.6e-159	98.6
WP_021524932.1\|3260852_3261674_-	hypothetical protein	G9L6A3	Escherichia_phage	6.1e-163	98.9
WP_001102254.1\|3261670_3261970_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	1.4e-45	98.0
WP_000836290.1\|3262278_3262863_-	helix-turn-helix transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
WP_001282457.1\|3263017_3263248_+	hypothetical protein	G9L6A7	Escherichia_phage	2.9e-38	97.4
WP_098944945.1\|3263614_3264454_+	primosomal protein	Q286X4	Escherichia_phage	2.7e-118	96.4
WP_001066741.1\|3264450_3265236_+	hypothetical protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	3.6e-152	99.6
WP_021558026.1\|3265353_3265701_+	hypothetical protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	5.9e-59	96.5
WP_024946514.1\|3265762_3266242_+	hypothetical protein	Q9MCR3	Enterobacteria_phage	1.5e-28	54.2
WP_024946515.1\|3266238_3266784_+	hypothetical protein	J9Q748	Salmonella_phage	3.2e-83	83.2
WP_001593200.1\|3266780_3267080_+	hypothetical protein	A5VWB2	Enterobacteria_phage	1.4e-56	97.0
WP_024946516.1\|3267081_3267846_+	ead/Ea22-like family protein	A0A1B0VCG7	Salmonella_phage	2.4e-68	95.6
WP_024946517.1\|3268359_3269289_+	DUF551 domain-containing protein	Q1MVF7	Enterobacteria_phage	7.9e-66	50.6
WP_024946519.1\|3269781_3270456_+\|terminase	terminase small subunit	Q287B7	Escherichia_phage	3.4e-119	99.6
WP_024946520.1\|3270452_3271922_+	hypothetical protein	G9L6B8	Escherichia_phage	1.2e-289	97.4
WP_024946521.1\|3271926_3272532_-	hypothetical protein	NA	NA	NA	NA
WP_000335899.1\|3273293_3273500_+	hypothetical protein	G9L6C1	Escherichia_phage	6.0e-11	100.0
WP_024946522.1\|3273514_3275194_+\|tail	tail protein	G9L6C2	Escherichia_phage	3.1e-302	99.1
WP_000133160.1\|3275190_3275487_+	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
3275256:3275271	attR	NA	NA	NA	NA
WP_001048075.1\|3275489_3276185_+	peptidase	G9L6C4	Escherichia_phage	6.0e-95	100.0
WP_024946523.1\|3276199_3277186_+	hypothetical protein	G9L6C5	Escherichia_phage	2.5e-179	94.5
WP_000012377.1\|3277685_3278021_+	hypothetical protein	G9L6C7	Escherichia_phage	7.7e-56	100.0
WP_000179260.1\|3278077_3278683_+	hypothetical protein	G9L6C9	Escherichia_phage	2.8e-112	100.0
WP_098944946.1\|3278682_3281154_+	hypothetical protein	G9L6D0	Escherichia_phage	0.0e+00	99.1
WP_098944947.1\|3281153_3281618_+	hypothetical protein	G9L6D1	Escherichia_phage	3.2e-84	99.4
WP_000332877.1\|3281617_3282193_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	7.0e-81	95.3
WP_098944948.1\|3282192_3284940_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	1.4e-118	44.1
WP_001123342.1\|3284939_3288329_+	hypothetical protein	A0A1E1GEP2	Vibrio_phage	6.2e-185	36.9

DBSCAN-SWA_4

3689514 : 3698956

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022645872.1\|3689514_3690441_+	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	5.7e-08	26.8
WP_022645871.1\|3690445_3691177_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|3691157_3691265_-	protein YohO	NA	NA	NA	NA
WP_001240398.1\|3691324_3692056_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001334139.1\|3692277_3693963_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	9.5e-304	99.5
WP_012311742.1\|3693959_3694679_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|3694725_3695196_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|3695236_3695698_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_022645869.1\|3695822_3697823_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.8
WP_001329822.1\|3697819_3698956_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.2e-162	97.4

DBSCAN-SWA_5

4255689 : 4323564

Enterobacteria_phage(43.4%)

protease,portal,tail,lysis,integrase

attL 4250979:4250995|attR 4281720:4281736

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4250979:4250995	attL	NA	NA	NA	NA
WP_022645727.1\|4255689_4258116_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.7e-213	49.2
WP_001295396.1\|4258314_4258620_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_001445899.1\|4258727_4259438_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_001138584.1\|4259440_4260001_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_000705197.1\|4260035_4260377_-	DUF1283 family protein	NA	NA	NA	NA
WP_001304355.1\|4260511_4260838_+	YnfA family protein	A0A218MNG8	uncultured_virus	2.9e-23	54.5
WP_001295394.1\|4261043_4262258_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000836037.1\|4262269_4263289_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
WP_001389342.1\|4263346_4263475_+	hypothetical protein	NA	NA	NA	NA
WP_000876976.1\|4263476_4264757_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.0e-156	62.6
WP_001296941.1\|4264791_4265028_-	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_024946566.1\|4265115_4267587_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	57.5
WP_001090200.1\|4267679_4267871_-	DUF1482 family protein	NA	NA	NA	NA
WP_001317853.1\|4267867_4268056_-	hypothetical protein	NA	NA	NA	NA
WP_000159335.1\|4268558_4268759_+	hypothetical protein	NA	NA	NA	NA
WP_001320327.1\|4268727_4269093_-	hypothetical protein	NA	NA	NA	NA
WP_000379591.1\|4269104_4269257_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_001003381.1\|4269449_4269857_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
WP_000476993.1\|4269934_4270162_+	transcriptional regulator	NA	NA	NA	NA
WP_000705349.1\|4270145_4270667_+	hypothetical protein	NA	NA	NA	NA
WP_000054505.1\|4270647_4271613_+	hypothetical protein	U5P0A0	Shigella_phage	2.9e-55	61.2
WP_001151189.1\|4271653_4272055_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.4e-64	95.5
WP_022645725.1\|4272254_4273277_+	hypothetical protein	Q858S2	Enterobacteria_phage	2.5e-105	62.4
WP_001546200.1\|4274139_4274247_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	2.5e-08	96.6
WP_000887491.1\|4274291_4274504_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
WP_000980999.1\|4274720_4274972_+	hypothetical protein	NA	NA	NA	NA
WP_032140164.1\|4275038_4275317_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_001376415.1\|4275318_4276368_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	6.5e-109	54.6
WP_000904111.1\|4276380_4276737_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.1e-35	62.7
WP_000762886.1\|4276751_4277573_+	antitermination protein	K7P7B9	Enterobacteria_phage	2.1e-78	59.0
WP_000562553.1\|4278468_4278600_+	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
WP_000506936.1\|4278966_4279395_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_001348108.1\|4279566_4279941_+	hypothetical protein	NA	NA	NA	NA
WP_000839562.1\|4280192_4280408_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.3e-32	94.4
WP_000196128.1\|4280412_4280724_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.5e-24	62.6
WP_001092966.1\|4280720_4281254_+	lysozyme	K7PLY1	Enterobacteria_phage	8.4e-97	93.2
WP_001071776.1\|4281250_4281748_+	DUF2514 domain-containing protein	NA	NA	NA	NA
4281720:4281736	attR	NA	NA	NA	NA
WP_000066495.1\|4282111_4282324_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071526745.1\|4282334_4282523_+	cold-shock protein	NA	NA	NA	NA
WP_001443523.1\|4282670_4282826_+	hypothetical protein	NA	NA	NA	NA
WP_001019207.1\|4282998_4283172_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000548593.1\|4283467_4283674_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
WP_022645722.1\|4284226_4284721_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	3.8e-83	99.4
WP_098944965.1\|4287058_4287628_+	antirepressor protein	A0A1W6JPH8	Morganella_phage	2.0e-51	61.3
WP_050489335.1\|4287844_4288288_-	hypothetical protein	NA	NA	NA	NA
WP_050489334.1\|4288319_4288514_-	hypothetical protein	NA	NA	NA	NA
WP_032279725.1\|4288849_4289050_+	hypothetical protein	NA	NA	NA	NA
WP_087907452.1\|4289055_4289355_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_087907453.1\|4289351_4291211_+	DNA primase	Q7M2A8	Enterobacteria_phage	1.9e-127	50.2
WP_087907454.1\|4291498_4291744_+	hypothetical protein	NA	NA	NA	NA
WP_087907455.1\|4291740_4292163_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_001475270.1\|4292526_4292700_-	hypothetical protein	NA	NA	NA	NA
WP_042021406.1\|4292792_4294706_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	6.1e-214	56.8
WP_000373415.1\|4294963_4295449_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.7e-48	67.5
WP_001504099.1\|4295451_4295733_+	hypothetical protein	NA	NA	NA	NA
WP_001072975.1\|4297216_4297429_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000985958.1\|4297428_4298937_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	6.6e-288	99.4
WP_001136588.1\|4298881_4300909_+\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.7
WP_001097050.1\|4300994_4301318_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_022645721.1\|4301310_4301586_+	phage protein	K7PH43	Enterobacteria_phage	3.8e-45	98.9
WP_000677120.1\|4301597_4302188_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
WP_001079410.1\|4302184_4302586_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	2.4e-72	99.2
WP_022645720.1\|4302596_4303340_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.3e-131	98.4
WP_001370402.1\|4303400_4303787_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	4.9e-62	96.1
WP_063815218.1\|4303795_4304113_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	4.4e-53	100.0
WP_022645718.1\|4304096_4307162_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.2
WP_000447253.1\|4307161_4307491_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_001152382.1\|4307500_4308199_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.3e-134	99.6
WP_024946565.1\|4308204_4308948_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-150	98.4
WP_023277304.1\|4308845_4309493_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.7e-110	94.9
WP_022645716.1\|4309553_4313033_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
WP_001228249.1\|4313100_4313700_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.5e-102	92.0
WP_001546831.1\|4313764_4316137_+\|tail	phage tail fiber protein	A0A0E3M0V5	Enterobacteria_phage	4.1e-103	47.5
WP_001546830.1\|4316133_4316412_+	hypothetical protein	A0A0E3GMJ7	Enterobacteria_phage	3.8e-24	54.3
WP_001546829.1\|4316422_4317463_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	4.5e-155	80.5
WP_001546828.1\|4317505_4317799_+	hypothetical protein	NA	NA	NA	NA
WP_000086527.1\|4318026_4318617_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836768.1\|4318933_4319167_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|4319235_4319349_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000347484.1\|4320730_4322014_+	MHS family MFS transporter	NA	NA	NA	NA
WP_000527788.1\|4322103_4323564_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	6.6e-43	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP023816

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

20085 : 85767

Macacine_betaherpesvirus(26.09%)

protease,integrase,transposase

attL 29700:29716|attR 54880:54896

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085947770.1\|20085_21455_-\|transposase	IS3-like element IS150 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.3e-112	100.0
WP_001276232.1\|21614_22334_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_000845940.1\|22330_22765_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_000117179.1\|22819_24778_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.3e-22	27.4
WP_000005990.1\|24843_25077_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_042045560.1\|25139_25637_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	3.3e-39	72.3
WP_000936285.1\|25786_27688_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.1e-32	29.1
WP_032143370.1\|28573_28762_-	hypothetical protein	NA	NA	NA	NA
WP_001348622.1\|28982_29195_-	hypothetical protein	NA	NA	NA	NA
WP_001348621.1\|29220_29784_-	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	1.0e-20	37.3
29700:29716	attL	NA	NA	NA	NA
WP_000170714.1\|29830_31192_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_000218642.1\|31243_31474_-	hypothetical protein	NA	NA	NA	NA
WP_001027516.1\|32508_32700_-	hypothetical protein	NA	NA	NA	NA
WP_000271753.1\|32696_33119_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001671341.1\|33165_33468_-	antirestriction protein	NA	NA	NA	NA
WP_000274437.1\|34834_35269_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001104873.1\|35282_35504_-	hypothetical protein	NA	NA	NA	NA
WP_000086185.1\|35504_36188_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	36.9
WP_001348615.1\|36572_37475_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_000817036.1\|38341_39313_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-174	99.4
WP_000772446.1\|39312_40479_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
WP_000852146.1\|41066_41822_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	3.8e-143	100.0
WP_000016982.1\|42595_43402_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
WP_001159868.1\|43402_43708_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_023909027.1\|43709_43928_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_000215657.1\|44560_44758_+	hypothetical protein	NA	NA	NA	NA
WP_000642771.1\|44754_45039_-	hypothetical protein	NA	NA	NA	NA
WP_000545983.1\|45058_46192_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_023909028.1\|46454_49574_-	hypothetical protein	NA	NA	NA	NA
WP_001261287.1\|49880_50111_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044768.1\|50107_50524_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_000350635.1\|50685_52824_-	AAA family ATPase	NA	NA	NA	NA
WP_000246636.1\|53288_54284_+	hypothetical protein	NA	NA	NA	NA
WP_000991832.1\|54287_55220_+	hypothetical protein	NA	NA	NA	NA
54880:54896	attR	NA	NA	NA	NA
WP_031311986.1\|56267_59384_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	2.9e-27	24.0
WP_001617890.1\|59505_60789_-	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	2.2e-10	26.5
WP_001553856.1\|60785_62342_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.1e-104	42.5
WP_001190712.1\|62524_62746_+	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_001216034.1\|62745_63126_+	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
WP_001513661.1\|63130_63310_+	hypothetical protein	Q71TH5	Escherichia_phage	3.5e-23	96.6
WP_001513660.1\|63337_63697_+	hypothetical protein	A0A077SLM1	Escherichia_phage	5.0e-45	98.9
WP_000361610.1\|64829_65807_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.4e-100	59.2
WP_001066942.1\|66091_66832_-	site-specific recombinase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_032156742.1\|66952_67078_-	hypothetical protein	NA	NA	NA	NA
WP_001072355.1\|68277_69447_+	hypothetical protein	NA	NA	NA	NA
WP_086258557.1\|69642_69837_-	hypothetical protein	NA	NA	NA	NA
WP_001322387.1\|70688_71315_-	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001089068.1\|71393_72599_+	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
WP_000428546.1\|72711_73305_-	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA
WP_001067858.1\|74599_75304_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_023144756.1\|76022_76157_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_000083850.1\|76453_76708_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_001016257.1\|76867_77614_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.0e-55	48.5
WP_002431311.1\|77628_79170_-\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.3e-129	46.4
WP_031943482.1\|79531_79606_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_000130640.1\|79598_80456_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_000616807.1\|81395_82049_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|82141_82399_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|82331_82733_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001553819.1\|82869_85767_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8

DBSCAN-SWA_2

92540 : 99030

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|92540_93245_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_098944979.1\|93278_93521_-	class A beta-lactamase	Q38212	Enterobacteria_phage	5.4e-35	100.0
WP_001235713.1\|93703_94261_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_001067855.1\|95589_96294_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000027057.1\|96878_97739_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001347546.1\|97888_98314_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001067855.1\|98325_99030_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023815

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP023816

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection