CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023667	Alcaligenes faecalis strain DSM 30030 chromosome, complete genome	2 crisprs	csa3,DEDDh,cas3,RT	1	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023667_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023667_1

515918-516031

Orphan

Consensus_repeat	Method
GGGGGCAGCGAGCCGAAGGCGCAGCGTGGGGGCTTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023667_1

>merge|NZ_CP023667|1|515918-516031|CRISPRCasFinder
GGGGGCAGCGAGCCGAAGGCGCAGCGTGGGGGCTTTTTTGTCGCCGGGCCGCCCCAAGGCAAAAACTCCCCCTCGGGGGGCAGCAAGCCGAAGGCGCAGCGTGGGGGCTTTTTT

>NZ_CP023667|1|1|515918-516031|CRISPRCasFinder
GGGGGCAGCGAGCCGAAGGCGCAGCGTGGGGGCTTTTTT	GTCGCCGGGCCGCCCCAAGGCAAAAACTCCCCCTCG
GGGGGCAGCAAGCCGAAGGCGCAGCGTGGGGGCTTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023667.1\|WP_042483322.1\|513766_514792_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|223088
NZ_CP023667.1\|WP_042483336.1\|519075_520821_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP023667.1\|WP_042483353.1\|525351_526152_+\|tRNA-threonylcarbamoyladenosine-dehydratase	unknown	unknown	gnl\|CDD\|238384
NZ_CP023667.1\|WP_009455126.1\|512064_512577_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_CP023667.1\|WP_042483346.1\|523233_523746_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NZ_CP023667.1\|WP_042483343.1\|522029_523145_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223652
NZ_CP023667.1\|WP_042483599.1\|512592_513774_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP023667.1\|WP_009455128.1\|509832_510897_+\|fructose-bisphosphate-aldolase-class-II	unknown	unknown	gnl\|CDD\|181691
NZ_CP023667.1\|WP_042483349.1\|523785_524418_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NZ_CP023667.1\|WP_042483318.1\|509121_509751_+\|molybdopterin-adenylyltransferase	unknown	unknown	gnl\|CDD\|181837
NZ_CP023667.1\|WP_080723729.1\|514856_515672_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP023667.1\|WP_042483334.1\|518197_519079_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP023667.1\|WP_042483331.1\|516731_517925_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
NZ_CP023667.1\|WP_009455127.1\|511036_511918_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_CP023667.1\|WP_042483312.1\|506703_508146_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143427
NZ_CP023667.1\|WP_080723725.1\|505785_506628_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187576
NZ_CP023667.1\|WP_042483350.1\|524427_525099_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NZ_CP023667.1\|WP_042483327.1\|516045_516492_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239538
NZ_CP023667.1\|WP_042483339.1\|521149_521998_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP023667.1\|WP_042483315.1\|508282_509041_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235975

Protein	Function_ID	Function_description	E-value
NZ_CP023667.1\|WP_042483322.1\|513766_514792_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	2.74791e-76
NZ_CP023667.1\|WP_042483336.1\|519075_520821_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP023667.1\|WP_042483353.1\|525351_526152_+\|tRNA-threonylcarbamoyladenosine-dehydratase	gnl\|CDD\|238384	cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.	1.0647e-92
NZ_CP023667.1\|WP_009455126.1\|512064_512577_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	1.72911e-76
NZ_CP023667.1\|WP_042483346.1\|523233_523746_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	5.85993e-47
NZ_CP023667.1\|WP_042483343.1\|522029_523145_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223652	COG0579, COG0579, Predicted dehydrogenase [General function prediction only].	3.41893e-110
NZ_CP023667.1\|WP_042483599.1\|512592_513774_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
NZ_CP023667.1\|WP_009455128.1\|509832_510897_+\|fructose-bisphosphate-aldolase-class-II	gnl\|CDD\|181691	PRK09196, PRK09196, fructose-bisphosphate aldolase class II.	0
NZ_CP023667.1\|WP_042483349.1\|523785_524418_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	2.07156e-110
NZ_CP023667.1\|WP_042483318.1\|509121_509751_+\|molybdopterin-adenylyltransferase	gnl\|CDD\|181837	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional.	1.71768e-119
NZ_CP023667.1\|WP_080723729.1\|514856_515672_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.58644e-21
NZ_CP023667.1\|WP_042483334.1\|518197_519079_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.13184e-67
NZ_CP023667.1\|WP_042483331.1\|516731_517925_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0
NZ_CP023667.1\|WP_009455127.1\|511036_511918_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_CP023667.1\|WP_042483312.1\|506703_508146_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143427	cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.	0
NZ_CP023667.1\|WP_080723725.1\|505785_506628_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.59871e-53
NZ_CP023667.1\|WP_042483350.1\|524427_525099_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	5.12947e-61
NZ_CP023667.1\|WP_042483327.1\|516045_516492_+\|MaoC-family-dehydratase	gnl\|CDD\|239538	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.	3.18152e-61
NZ_CP023667.1\|WP_042483339.1\|521149_521998_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	1.74898e-177
NZ_CP023667.1\|WP_042483315.1\|508282_509041_+\|SDR-family-oxidoreductase	gnl\|CDD\|235975	PRK07231, FabG-like, SDR family oxidoreductase.	1.96293e-140

>NZ_CP023667.1|WP_080723729.1|514856_515672_-|alpha/beta-hydrolase
MTTLDSSLQFASLTQGTQAIELEYQRIAPERETAPLLVFLHEGLGSIAMWKDWPAQLCEQTGCSGLMYSRYGYGRSTPRPDNSPKEPDYLHEQSLEVLPQLLEQLGEDGKKRPIVLVGHSDGGSIALLAASGFSDKLQGIVVMAPHLFVEDISLRGILVAREAYEQGFLRERLGRYHDDVESAFWGWNATWTDPRFRDWNIEEDVSRITCPILAIQGVDDEYGTLEQIRRIKELVPHTELLELEQCGHLPYRDKEAQVNQAIVDFLKRTAR
>NZ_CP023667.1|WP_042483322.1|513766_514792_+|threonylcarbamoyl-AMP-synthase
MTDTPSSPSEQQIEQAARVLAQGGLVAFPTETVYGLGADAENPAAVQLIYKAKGRPANHPLIVHVAPGADLRYWVTDIPPVAQQLMDAFWPGPLTLILPRNPAIPDTVSGGQSSIGIRCPSHPVAQALLKRMAELKPGGQAGVAAPSANKFGQVSPTAASHVRDEFADMSAEELLIVEAGPSEVGIESTIVDVSRTHQGVGAVLLRPGHISAAMIAEVIGYEPVSPDQQAPQVSGSLKAHYAPRTPLSLFDEGNAPAVQAALAKGGKQAIVAFASLPPFSADVHDWYVCSPDAQLYAQDLYAMLRRLDQGQYQHIWVQRCPDMPDWQAVNDRLGRAAAAFE
>NZ_CP023667.1|WP_042483599.1|512592_513774_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MTPMTDAALLVPGSWLGMIGGGQLGRMFCHSAQSLGYKVAVLDPDTHSPAGAVADLHICAAYDDAQALARLGDLCQAVSTEFENVPAQSLLTLAQHTRVTPSGDAVGIVQDRIREKAFISQAGVPVAPYAAIESLDDLQAADGALFPGILKTARFGYDGKGQARVADREQALAAFKEFGSQACVLEALQPLKSEISVVLARGLDDQVKTFPCARNEHRDGILAVSTISAQFQDDALSEQARQAAAAIARTLDYVGVLCVEFFILEDGRLLANEVAPRPHNSGHYTMNACVTSQFEQQARVMAALPLGDTGALCPSMMLNILGDIWFDEQGQMREPDWAALLAVPGVSLHLYGKAEARVGRKMGHVNIVGGSDQQVRERTARAAAALHIAFDHD
>NZ_CP023667.1|WP_009455126.1|512064_512577_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSVQTPAAPTVGIVMGSSSDWDVMSQAVAILDEFGVSYECRVVSAHRMPIDMVDYGAQAPARGLKAIIAGAGGAAHLPGMLAALTHLPVFGVPVPSRYLRGEDSLLSIVQMPKGVPVATFAIGEAGAANAALHVIANLAVNDAVLTEKLIAYRARQTEAARAMRVPPATA
>NZ_CP023667.1|WP_009455127.1|511036_511918_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MQEPLHQSSLSSLPLLARGKVRDMYAVGEDKLLIVASDRISAFDVILDDPIPGKGAVLTQMTEFWLNKLAHIIPNHTTGVNPVDVVAPEERAQVEGRSMVVKRLKPIMVEAVARGYLIGSGWKDYQATGAVCGITLPAGLKQAAKLPHVLFTPAAKAEMGSHDENVDFAHVVKEVGQELAEQIRDVTLRLYTEAADYAASRGILIADTKFEFGLDDQGQLHLMDEVLTPDSSRFWPADSYAEGISPPSYDKQFVRDWLETQVWDKTPPAPRLPAEVAERTADKYREALERLTA
>NZ_CP023667.1|WP_009455128.1|509832_510897_+|fructose-bisphosphate-aldolase-class-II
MALVSMRQLLDHAAEHGYGIPAFNVNNLEQVQAIMEAASETDSPVIMQASAGARKYAGEAFLRHLIEAAVESYPNIPVVMHQDHGQSPEICKGAIELGFSSVMMDGSLLPDGKTIADFEYNVEVTRKVVEMAHKLGVTVEGELGCLGSLETMQGDKEDGHGADGVLTLDQLLTDPEQAAEFVTRTQLDALAIAIGTSHGAYKFTRKPTGDILSIERVKEIHRRLPNTHLVMHGSSSVPQELLAEIRQFGGNMKETYGVPVEEIQEAIKYGVRKVNIDTDIRLAMTAAIRRFLFENPEKFDPREYLKPAREAAKKVCVARYQQFGAAGQASKIKAIPLQEIARQYSTGELSQIVQ
>NZ_CP023667.1|WP_042483318.1|509121_509751_+|molybdopterin-adenylyltransferase
MTFNRQSPREHPDQLRIGLVSVSDRASSGQYQDQGIPALRRWLDSALTVAPAYLERLIPDERAQITGTLVELVEAGCDLILTTGGTGPARRDVTPEATLDAGTREMPGFGEQMRQISLKFVPTAILSRQVAVIREIQDHAALIINLPGQPKAIQETLEGLRDTETGQVLVPGIFAAVPYCIDLIGGPYAQTHEHVVNAFRPKSARRTAS
>NZ_CP023667.1|WP_042483315.1|508282_509041_+|SDR-family-oxidoreductase
MRLQDKVAIVTGGASGFGLGIAQRFAREGARVLIADLNAEQGQAAAAQIQAQGGQAIFAACDVSQGDEVHALLDIALRECGGLHIVVNNAGTTHRNKPLLEVSESEFDLVYAVNVKSIYWAAKHFVPYLRAQGSGSFINIASTAALRPRPGLVWYNGTKGAVVTISKGMAAELGPDNIRVNCINPVIGDTALLEQFMGMPDTPENRSRFLAGIPLGRFCTPKDVAAAALYLASDEAEFITGTCIEVDGGRCI
>NZ_CP023667.1|WP_042483312.1|506703_508146_+|aldehyde-dehydrogenase-family-protein
MECRNWIDGQQLGAEGGGLLPVIDPSTGETFARLAQSSEVDIDWAVQAARRACQGPWSRLTAAQRSQLLLRCARTLSDAREELARLESRDTGKPLRQAQSDAAAIVRYFEFYAGAVDKLHGQTIPLGWEMTAFTLREPLGVTAHIIPWNYPLQIFGRSVAASLAAGNTCVVKPAEDASLSLLRVAELLHEAGLPAGVLNICTGLGSEAGQALSAHPDINHISFTGSPGTGRQVALQAAQNFVPVTLELGGKSPQVVFSDADLDAALPVVVNAIVQNAGQTCSAGSRVLIQRAIYGDFTERLAEAFKALLTGAASDNLDCGPLISAQQQARVRSYLENLDQDGIVVLAQGKLDSKAPAAGFYQVPVLLGHVPVEHRLAQEEIFGPVLVAQPFGTEEEAIAMANGTPYSLVAGVWTRDGARQVRMARQLRAGQVFVNNYGAAGGVELPFGGTGQSGIGREKGFEALYALTSLKTVALRHAAS
>NZ_CP023667.1|WP_080723725.1|505785_506628_-|NAD-dependent-epimerase/dehydratase-family-protein
MDSRQRTLLLAGAGDLGTRTGKLARQHEWPVIGLRRHIPLDDHSGIEWVEADLSEPTSLRLKHRKITHVLYAVSPDQRSQAAYERVFLHGLENLLNELDLKALKRFVFVSSSAVYGPSTEWVDENSPTEPTQFNGRVLLEAEQLLHHRIPAQAVVIRPSGLYGPGRTQLLDRLREGRATVPDDPEHWANRLHIEDAARACWHLLRTPAPFPCYIGTDSRPYRITELYDGLADLLEVAHPERRQSNEGGKRLSNQRLLDSGFQLDWPDAMQGYAQLIKDGA
>NZ_CP023667.1|WP_042483327.1|516045_516492_+|MaoC-family-dehydratase
MKFAEFEVGMLIKHPLVPVTREEMLDFAQKYDPQSFHIDDKQAEEGHWGGLIASGWLTCGKAMRMAVDSALHDSESFGSPGLERLRWVLPVRAGDSIRLEATVASKRVSSSRSDLGIIRWNWNVFNQRDELVLEMEATSMFELKSEQE
>NZ_CP023667.1|WP_042483331.1|516731_517925_-|acyl-CoA-dehydrogenase
MSDNPSFHWDDPLLLNQQLSDEERMVRDAAHAYAQEKLLPRVLEAFRHEQTDPAIFAEMGSLGLLGATIPEAYGGAGLNYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSEEQKQKYLPKLASGQWIGCFGLTEPNHGSDPGAMESRAVKVDGGYRLSGNKTWITNSPIADVLVVWAKVVGGEDDGKIRGFILEKGMKGLSTPAIHGKVGLRASLTGEIVMADVEIADSQMLPHVSGLRGPFTCLNSARFGIAWGALGAAESCWHTARQYTLDRKQFGRPLAANQLIQKKLADMQTEITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGIARHLVNLEVVNTYEGTHDVHALILGRAQTGIQAFF
>NZ_CP023667.1|WP_042483334.1|518197_519079_+|LysR-family-transcriptional-regulator
MRQGVPSLGALQAFEATARLGTFSRAAEELSLTHSAVYRQVSGLEQRLGVTLLTRVRRRLVLTPAGRDYAARIRHHLEQIGKDTFSLIARAGVGRSIHLAVLPTLSTVWLMPRLARFSQRYPDITVSLSVRTTPFQFGDHPFDAAIYHGRQLWPQTEGIKLFDEGELVPVCSAKLAASGDWKKLVHLHMSTRPDSWSDWYRSAGLEPDLRVSSGPRYELFSLVMAALHADMGVALMPRFLVQEALEQGELIMPLDHAMPVSEAYFFSYPTANEPSEAVLLLEQWLLEHEKENT
>NZ_CP023667.1|WP_042483336.1|519075_520821_+|gamma-glutamyltransferase
MRLHWKPALLSAALTLALALPTHAREVASQHLNPEAASSVMQRDKLVTQKSMVVTAHPLATQAGLRILEQGGSAVDAAIAAQLVLGLVEPQSSGIGGGGFLLMFQPKTGLMSYDGRETVPAASSLDRFELDGKTMSFKQAVNSGRSVGVPGLLRALELMHKDGGVLPWANLFDPAIELAEVGFEVSPRLNTLIADNPELADKAATRAYFLNEQGKPWPVSHRLQNKEYAQVLRLLASQGAQAFYQGELAQDMVAAVAADPIAGDLAVSDLTQYRALRREPLCMDWQQVALCGMAPPSSGAISVMQMLGILQHTPIADAKPQSVEAIHYFSEAGRLAFADRDAWVADPAFVSVPQQALLAPEYLKSRAALIQPDRSMGHAQPGKPLADSQAASDNTPELPSTTHLSVADDKGQVVSMTTSVESAFGSKIMVHGFLLNNQLTDFALSPKDEMGRLSVNRVEPGKRPRSSMAPMMVLQDGRPVIALGSPGGSAIIPYVAQALTGMLMWNLDAQEAVSLPHYGSRNWATELEAGTAVTEQAQALRALGHEVREQPFPSGTHVIRWTQDGLEAGVDPRREGLALGQ
>NZ_CP023667.1|WP_042483339.1|521149_521998_-|formyltetrahydrofolate-deformylase
MNDYILTLSCPDRTGIVHSVSGWLLEQNGNILEAQQFGDAATNRFFLRIQFSLPEKQDVNALQTSFAPIAEKFSMDANIYDAQRKARLLILVSRQGHCLNDLLFRAHSGQLPVEIAAVASNHTDHAGLASSYGIPFHHLPVTPETRPEQEQQIIDLARDLKIDLVVLARYMQILSTNLCQSLSGRAINIHHSFLPSFKGARPYHQAHARGVKIIGATAHYVTADLDEGPIIEQGVEHVTHSVSPAELTQIGSDVESLVLARAVRAHVEHRILLNDQRTVVFR
>NZ_CP023667.1|WP_042483343.1|522029_523145_-|NAD(P)/FAD-dependent-oxidoreductase
MANDVDCIVLGAGVVGLACARQMAQQGMEVLLIEQTASIGNGVSSRNSEVIHAGIYYTPGSLKARLCVEGKARLYDYCQEHHVDHARCGKLIVATTPEQEADLLKLQAQARACGVDDLQWLDAAQAQALEPALNCSAALLSPSTGIVDTHALMLALQGDAENHGAQLVFNTPFVSARVLPGQGFEVHVGGAEAFSLTTTHLINAAGLGAVAAARQIEGLDASHIPNAYLCKGSYFSLAGRSPFKHLIYPMPNKAGLGVHLTLDLAGQARFGPDTEWVQDENYDMDPQRGQSFYAAVREYWPALPDDSLNPAYSGIRPKIVPAGHAAADFVFSGPAEHGIPGLLNLFGIESPGLTACLAIAQHSQETLAQAA
>NZ_CP023667.1|WP_042483346.1|523233_523746_-|flavin-reductase-family-protein
MTVFSSTFDSDFFRSALGRFATGVTVVTGANKDHPDQAIGLTVSSFNSVSLDPPLVLWSLAKRSQSLPHFVDGAGYVIHVLGASQLSLAKRFAWGEQAERFRDHPTKRSPHGLPMLDDERCSAWFECKPYAVHEAGDHLIFIGEVTHCERSAHQPLIYHAGDFDLTPSLA
>NZ_CP023667.1|WP_042483349.1|523785_524418_-|pyridoxamine-5'-phosphate-oxidase
MSLADFRNEYERFSLSENELCADPRQQFQRWLDQAIELKEVEPTAMTLATVNAEGRPSARVVLLKGYDEQGLVFFTNYASRKGTDLDQNPWASLSFFWASMQRQVRFEGRISRISATESDEYFHSRPLGSRIGAWASPQSQPISRAELDARAKQYTESLGEHPARPEHWGGFRLTPDHVEFWQGRASRLHDRLVFDRKDQSDWQVSRLAP
>NZ_CP023667.1|WP_042483350.1|524427_525099_-|gamma-glutamylcyclotransferase
MNIDSISASPSAVPTPCSFRVLTDEERNASLRQSLEEAQWCEKQDLWVYGYGSLIWRPDFEFAEQRQALLRGYHRALCLWSRINRGTPEQPGLVFGLDVGGSCRGMAFRIPAESVPKVFDALWLREMPSGAYIPRWLRCRTSQGDIRALVFTMNRKTDAYVPRMPDEQLRQVVYSAQGTNGPCIEYVMETASALQRSKILDKRLQSVVQLLQSQTALLNPQQA
>NZ_CP023667.1|WP_042483353.1|525351_526152_+|tRNA-threonylcarbamoyladenosine-dehydratase
MTEQHNMDAERRFGGLDRLYGAGARERLAAAHVMVAGIGGVGTWAVEALARSAVGRITLIDLDNIAESNINRQLPALDSTLGMAKIEAMAQRIAQINPHCQLQLIEDFVTEDNAASLMEQRPDVFLDCTDQASAKIALILQAKRCKVPLLSCGGAGGKTDPLSLRRGDLSVARHDALLGKLRQILRKQHGFARGSDAQGRALKRVSRMGVDCLWFEQETRLPQNWTQAEDGALQGLACAGYGSGVTITASMGMQAADYALNRILNQ

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Crispr_ID: NZ_CP023667_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023667_2

2399152-2399252

Orphan

Consensus_repeat	Method
CCCCCACGCTGCGCCTTTGGCTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023667_2

>merge|NZ_CP023667|2|2399152-2399252|CRISPRCasFinder
CCCCCACGCTGCGCCTTTGGCTTGCTGCCCCCCAAGGGGGCGTTTTTACCTTGGGGCGGCCCGGCGGTAAAACAAACCCCCACGCTTCGCCTTTGGCTTGC

>NZ_CP023667|2|2|2399152-2399252|CRISPRCasFinder
CCCCCACGCTGCGCCTTTGGCTTGC	TGCCCCCCAAGGGGGCGTTTTTACCTTGGGGCGGCCCGGCGGTAAAACAAA
CCCCCACGCTTCGCCTTTGGCTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023667.1\|WP_042481991.1\|2404146_2404818_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP023667.1\|WP_042481969.1\|2394996_2395401_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|272901
NZ_CP023667.1\|WP_042481995.1\|2407511_2408189_+\|hydantoin-racemase-HyuE	unknown	unknown	gnl\|CDD\|226611
NZ_CP023667.1\|WP_042481972.1\|2396729_2397503_+\|thiol:disulfide-interchange-protein-DsbG	unknown	unknown	gnl\|CDD\|183262
NZ_CP023667.1\|WP_042481975.1\|2397524_2397827_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224334
NZ_CP023667.1\|WP_042481993.1\|2404911_2405754_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP023667.1\|WP_042481997.1\|2408217_2409543_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|131385
NZ_CP023667.1\|WP_042481977.1\|2397960_2398731_+\|MipA/OmpV-family-protein	unknown	unknown	gnl\|CDD\|377682
NZ_CP023667.1\|WP_042481981.1\|2399441_2400896_-\|YdgA-family-protein	unknown	unknown	gnl\|CDD\|377603
NZ_CP023667.1\|WP_080723711.1\|2403620_2404067_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP023667.1\|WP_042481967.1\|2394370_2394988_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|185680
NZ_CP023667.1\|WP_042481988.1\|2402649_2403621_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP023667.1\|WP_042481985.1\|2401967_2402615_-\|maleylacetoacetate-isomerase	unknown	unknown	gnl\|CDD\|273527
NZ_CP023667.1\|WP_042481970.1\|2395971_2396589_+\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|234584
NZ_CP023667.1\|WP_009456141.1\|2395474_2395945_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|234634
NZ_CP023667.1\|WP_042481983.1\|2400974_2401850_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NZ_CP023667.1\|WP_042481979.1\|2398737_2399115_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|168689
NZ_CP023667.1\|WP_042482223.1\|2393474_2394380_+\|oxygen-dependent-coproporphyrinogen-oxidase	unknown	unknown	gnl\|CDD\|235413
NZ_CP023667.1\|WP_165589473.1\|2406075_2407473_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP023667.1\|WP_042481965.1\|2392163_2393453_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856

Protein	Function_ID	Function_description	E-value
NZ_CP023667.1\|WP_042481991.1\|2404146_2404818_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	3.05336e-99
NZ_CP023667.1\|WP_042481969.1\|2394996_2395401_+\|ribosome-silencing-factor	gnl\|CDD\|272901	TIGR00090, rsfS_iojap_ybeB, ribosome silencing factor RsfS/YbeB/iojap. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes RsfS(YbeB) from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. The conserved function of this protein is to silence ribosomes by binding the ribosomal large subunit and impairing joining with the small subunit in response to nutrient stress. Note that RsfS (starvation) is an author-endorsed change from the published symbol RsfA, which conflicted with previously published gene symbols. [Protein synthesis, Translation factors].	7.09059e-44
NZ_CP023667.1\|WP_042481995.1\|2407511_2408189_+\|hydantoin-racemase-HyuE	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	6.78376e-40
NZ_CP023667.1\|WP_042481972.1\|2396729_2397503_+\|thiol:disulfide-interchange-protein-DsbG	gnl\|CDD\|183262	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional.	1.91993e-109
NZ_CP023667.1\|WP_042481975.1\|2397524_2397827_+\|hypothetical-protein	gnl\|CDD\|224334	COG1416, COG1416, Uncharacterized conserved protein [Function unknown].	1.44227e-08
NZ_CP023667.1\|WP_042481993.1\|2404911_2405754_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.46428e-40
NZ_CP023667.1\|WP_042481997.1\|2408217_2409543_+\|MFS-transporter	gnl\|CDD\|131385	TIGR02332, putative_4-hydroxyphenylacetate_permease, 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. ( as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.	1.0354e-78
NZ_CP023667.1\|WP_042481977.1\|2397960_2398731_+\|MipA/OmpV-family-protein	gnl\|CDD\|377682	pfam06629, MipA, MltA-interacting protein MipA. This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.	1.47177e-42
NZ_CP023667.1\|WP_042481981.1\|2399441_2400896_-\|YdgA-family-protein	gnl\|CDD\|377603	pfam06097, DUF945, Bacterial protein of unknown function (DUF945). This family consists of several hypothetical bacterial proteins of unknown function.	1.0458e-89
NZ_CP023667.1\|WP_080723711.1\|2403620_2404067_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	2.70971e-32
NZ_CP023667.1\|WP_042481967.1\|2394370_2394988_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|185680	cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.	9.60218e-74
NZ_CP023667.1\|WP_042481988.1\|2402649_2403621_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP023667.1\|WP_042481985.1\|2401967_2402615_-\|maleylacetoacetate-isomerase	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	2.33373e-104
NZ_CP023667.1\|WP_042481970.1\|2395971_2396589_+\|septum-formation-inhibitor-Maf	gnl\|CDD\|234584	PRK00032, PRK00032, septum formation inhibitor Maf.	3.18038e-79
NZ_CP023667.1\|WP_009456141.1\|2395474_2395945_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|234634	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional.	8.95699e-82
NZ_CP023667.1\|WP_042481983.1\|2400974_2401850_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	1.60886e-92
NZ_CP023667.1\|WP_042481979.1\|2398737_2399115_-\|hypothetical-protein	gnl\|CDD\|168689	PRK06824, PRK06824, translation initiation factor Sui1; Validated.	2.2631e-43
NZ_CP023667.1\|WP_042482223.1\|2393474_2394380_+\|oxygen-dependent-coproporphyrinogen-oxidase	gnl\|CDD\|235413	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase.	0
NZ_CP023667.1\|WP_165589473.1\|2406075_2407473_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.7069e-58
NZ_CP023667.1\|WP_042481965.1\|2392163_2393453_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0

>NZ_CP023667.1|WP_042481979.1|2398737_2399115_-|hypothetical-protein
MASLSDQLSRLVYSTEQGRMCPDCGQPQNQCRCEENRREHALSQAQGPVRLSLETKGRKGKGVTVVSGLVMPQEQLKALVKELKNACGAGGTLKEGTLEIQGDHRAVVQARLEHNGLTVKRVGRP
>NZ_CP023667.1|WP_042481977.1|2397960_2398731_+|MipA/OmpV-family-protein
MPTLARSALRPCLLLALCALGTSQALAQQTTVGVGVGFAPKYEGADSYDGRFYPLLSHRNGHFFLAPKAGMPAIGLQTNLTDNWTIGTYAALARARKSGDADRLYGTDDIDRHGNLGVFTAYQLGNAKIEGSYYQALKSGYGATAVLDLSYRLWNDQDSSFSLGAELKWSNEKAMRTYFGVKSHEAAGSNGQLRTYRPDAGLRSYALYGQYTHKISESWSLQGLLGVNTLGEEAKDSPLVEKKSSVFGGIGLGYSF
>NZ_CP023667.1|WP_042481975.1|2397524_2397827_+|hypothetical-protein
MSTRVLLHAPTADALERARSNARNLLKDIPDAQIRIIANAQAVKACVEGTEHECDAYTYLCPNTLRNQALSAPERFQTLEQGAITALVKLQAENWIYIRA
>NZ_CP023667.1|WP_042481972.1|2396729_2397503_+|thiol:disulfide-interchange-protein-DsbG
MSLSSFSIRLALAGLLCTSTLAHAADRPAALKALEEQGLSIVGEFDAPGGLKAWGAYSGNRALAIYNLPDGQHMMVGTMIDANGEEVRPAGLDELVQPAIAKDMLGKLEKSRWIKDGDDKAPRVVYVFTDPNCPYCMQFWQMARPWVESGKVQLRHIMVGILAPSSSLKSAAILAAKDPTKALNEHSLAMLKDRSAGVKGLDSVPSDIEADLTRNEDLMMGWDLRATPAMVWQDEQGRIQMQTGASPDITERVFGPR
>NZ_CP023667.1|WP_042481970.1|2395971_2396589_+|septum-formation-inhibitor-Maf
MPFQPIYLASASPRRHDLLNSIQITHEVLNVPSPPGEDEPRLEQEAVLDYVRRTARDKLLRALEWRAQNSSLDQERAILSADTTVCMGEDIFGKPADMADAARILRELSGRRHKVMTALSLGVGGVEFESISISEVSFKTLNEQEIAEYCASGEPMGKAGAYGIQGLGGAFISHLSGSYTGVMGLPVHETYRLLELANLKIRTPG
>NZ_CP023667.1|WP_009456141.1|2395474_2395945_+|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MKLIVIAVGQRMPDWVEQGWQEYARRMPQDCAIELREIKAEPRTSGKTPAQMMQAEAKRIEAAIPAQAMRIALDERGKDLTTVKLAQELERWRSSGQDIAILVGGPDGLDAALKQSCHGMLRLSSLTLPHPLVRIFLAEQLYRAWSVMTGHPYHRA
>NZ_CP023667.1|WP_042481969.1|2394996_2395401_+|ribosome-silencing-factor
MNIETLQRLVIDALEDVKAQDIKVFSTTHMTGLFDRVVIASGTSNRQTRALAQNVFDKARQNKVEVLAHEGEDTGEWVLLDLGDIVVHCMQPAIRQYYNLEELWGERPVEVELLPQSRQVPPAGFFASADEDED
>NZ_CP023667.1|WP_042481967.1|2394370_2394988_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MDLKRVGLLGGSFDPIHKAHVALAVAAFEQLQLDQVQLLPAAQPWQRDALGASTQDRLAMAELAAQRHPGLQVNPVEIERGGPTYTIDTVRSLPAGSRYYWILGSDQLHNFCSWNDWQEILEYVELAVAQRPGSPVETPEALQQELSRLQRRLHQIDFLPMDISATQIRERVQRGDNITALVPEEVAQYIDKKRLYLSHPQARPV
>NZ_CP023667.1|WP_042482223.1|2393474_2394380_+|oxygen-dependent-coproporphyrinogen-oxidase
MSLPIDTVQAYFRQLQSHIVDTLEQLDGTPFESDQWDRPEGGGGLSRLLENGPVFERAAVLFSHVKGHTLPPSASAHRPELAGRPWEAMGVSLVIHPRNPFVPTTHMNVRMFVAQAQTADQDDVFWFGGGLDLTPYYLHEDDARHFHQVCHDALAPHGADYYPRYKRWCDEYFYLKHRNETRGIGGIFYDDLNEPGFEASFALTRSVGNSFTDAYAPIVRARMDQEYTQAHRDFQAIRRGRYVEFNLVFDRGTLFGLQSGGRTESILLSMPPQANWRYNWSPEPGTPEAALAQYLVPREWI
>NZ_CP023667.1|WP_042481965.1|2392163_2393453_+|phosphoribosylamine--glycine-ligase
MKLLVVGSGGREHALAWRLAQSARVQTVYVAPGNGGTARAERIENLAITDIQELIAFVKQEKIAFTVVGPEAPLAAGIVDAFRAAGLKIFGPTQAAAQLESSKDYAKAFMVRHNIPTAAYATFTDPEAAKDYIRQQGAPIVVKADGLAAGKGVIVATTLEEALGAIDDILGDGRFGAAGARVVVEECLTGEEASFIVMCDGKNVLPMATSQDHKRLKDGDQGPNTGGMGAYSPAPIVSPTLHNRIMREVIHPTMQGMAKEGLPYSGFLYAGVMIDDGPDATRPIKVLEFNCRMGDPETQPIMMRIKSDLTETFELALAGKLDEATIEWDRRTAIGVVLAAANYPEEPRTGDAITQFAKDTDECITFHAGTQMKEGTVVTTGGRVLCVTAMADSIRRAQEAAYEAISQTHFDGKQFRTDIGWRALPSSES
>NZ_CP023667.1|WP_042481981.1|2399441_2400896_-|YdgA-family-protein
MKKSTGLVTLVVVLAAAYGGSTWYTGKKTEALVGEKVTQFNTLAAEQMQQMGMSESVVMNVVDYQRGVFSSTARYTITIKPSDAEEKPLELTFDDKISHGPLPVSAMALGNFTPVAALSHSTLVKTKDTEGWYKLTGDKTPLWADSLVGFDGAVDSNVHFEAIKHQGDEIKVDFSGGQLRTKAGGKSKDIVVTGSFPKLFVDDISDDPLKLEASNFVVDFKQDGDINVNGTQVGKLSVDGVKMQTAETDGITFKQIAINSDAVTKDSISDTKVVYALTDLVFEDKVKLGSVELSMNFDRVYAPAISALSKLISDSNLQNDMDSVDGPTAQKMMELVLQALEHKPVLRVEPLRWYTAAGESKATLRVDFQKPDATLQELQTSPEMWIEAIPAAQLDLLISKPMLRGLAADMDKAEGLSPEEGNAAMLDMILDAAVAPYAESNMVKNDENGISTAIKYDGKDRVFDINGQRFTSEQLLGLVLMGMM
>NZ_CP023667.1|WP_042481983.1|2400974_2401850_-|NAD(P)-dependent-oxidoreductase
MNIGFCGLGRMGQPMVRRLLNAGHQVRIWNRSKDKAQALIEAGARWCDTPAQMAEQCEAVFLCVFDAQAVHDTVLGEQGLSTVQGALQIVVDHSSIPPQATREMAVQLQQRCGADWLDAPVSGGVGGAEQGTLAIMVGGAAAQLERVRPVLAAYSQRVTLMGAVGAGQVTKLCNQTIVATTLTAIAEALSLANDNGVDASKISEALGGGWADSILLQLFVPRMTRQDNQVKASVDTMLKDLNTVAGLASVSHTSMPVAHAAQQTYRAAHRLGLGEEDVARITQVNSYNYGE
>NZ_CP023667.1|WP_042481985.1|2401967_2402615_-|maleylacetoacetate-isomerase
MILYSYFRSSAAYRVRIGLNLKGLDYQIKPVHLLKDGGQQHQPDYVQINPVQLLPALDDDGLIITQSLAILEYLDERYPELPLLPKASAERAWARSMAQTVACDIHPLNNLRVLQYLKNELHAEEDARNQWYRHWVQVGLEGLEALVQRHGKKDHPFIFGDTPGVAEICLIPQMFNARRFEIDLSAFPRLLAVEEKCLELSAFQEAAPDRQPDAA
>NZ_CP023667.1|WP_042481988.1|2402649_2403621_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MSQATPVQNAEVVLAQPRGFCAGVDRAIDIVERALELHGAPIYVRHEIVHNRYVVEDLRNKGAIFIKELDEAPSGAIVIFSAHGVSRQVRDDAEKRGLKVFDATCPLVTKVHIEVSRMRAEGREIIMIGHVGHPEVEGTLGQADGGMYLVETPEDVADLKVADPDKLAFVTQTTLSVDDAAVVAQALRERFPNIVEPKKSDICYATQNRQDAVKIMAPQCDLVLVVGSTNSSNSNRLREVAERKGAEAYLLDKPEMIDPAWLVGKKRVGVTAGASAPEVLVNQVIQRLQELGVGKVRALDGVEENIAFPLPRELSRKIESLNK
>NZ_CP023667.1|WP_080723711.1|2403620_2404067_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MVRQDSYLTLHYRIELASGPAAGSVFADTFTGRPATLQLGNGQWAPGMEEKLLGHREDERFQLDITPEDAYGARNPDLLQRITREMLASNAAEGVEFVPGDMVEFAAPNGSRYSGVLKEIDDKTALFDFNHPLAGVALRLDVHILGIL
>NZ_CP023667.1|WP_042481991.1|2404146_2404818_+|DNA-repair-protein-RadC
MATSTLRRQGPRERMLAHGPACLSTPELLGIVLRTGTRERNAVELGQMLLDHFNGLKGLLSADASALRQLDGIGPAKCAELLVIRELQRRCALESLTDLPVLNQADKVREYCLAHIGHLPVEHCLALFLDNQLRLICAEEISRGTVNQASVYPREILRAALRHHSCAIILAHNHPSGAAYPSAADIRLTRHIRQALALVDIRLLDHIIVTPSQTVSMAERGDL
>NZ_CP023667.1|WP_042481993.1|2404911_2405754_+|MurR/RpiR-family-transcriptional-regulator
MSDPAVKSFVGRVRDILHDLSPSERRLAEFALDFPGDLAGYSASELASLAHVSNATVTRFIRRLGYSNYEAARKQVRSEKKAGSPLLLAATETEAERSLATQLQQSQNNLASTYRRIPDSLLQEIAQAILAARKVWVLGFRSSHALANYFRWQLLQIVPEAQLIPGPGETMGEHLAGIHAEDVVVIFALRRRVRNMDQLIGQMAQLNPNVLHITDQLSAEKSACRWTLRCDVQSPGVLDNHVAVIGLCHLILSQVMDQAGPAGRRHLGMVEAFHDSFLEL
>NZ_CP023667.1|WP_165589473.1|2406075_2407473_+|MFS-transporter
MPANTGQAQASSTANNHTVQQQLENSLETIGVTNSHRKVLALILLGVLFDVLEQNAVGLVGPLLQEHWGLTPRDVGFLNTLTFAAAALGRLLSGYIADHYGRRVMLTINLALFTLGALICALAPSYWVLGLGRMIVGFGLGGEISIAVTMLAEFCSSRFRGTAVGTINVAGGGLGNMLAPAFGLLVFTLFPGPESWRWVFGLLVMPAFMVLFYRRYIPETPRFLVSQGRIDEANQVLNILASGKLGRHVANPYPYLHSGPQAQKAERVRLSEIFQGPLAMRTLVTGIAVCMTYGAQLTVLTLMPTLLVEQGYSLVKSYTFTILMQSGSLLGALTASYLGSRVPRKRVFTLGALLACASGLAFGFLSFNIYLVLLFGAAFQFCVLLLNTTIWIFSPELYPTRVRAFGTAFILALGTLAGAFIPTLSGWVLEGYGVAGMFTLMAGMYVTFAAVLQLAPETFGRPLDT
>NZ_CP023667.1|WP_042481995.1|2407511_2408189_+|hydantoin-racemase-HyuE
MSHTVLLINPNTSRPTTDMMVALAQACFQSLQRSDIQVRGLTAPEGPGMLTEMKELEQAATMARHPLVLAQAQDADGVIVGAFGDPGLQVLAEHVTVPVIGIGQASMMQAARAGSPFGIATTTPGLEQSILDQVQRYGWSDQFSGLRLTPTAPLDLAQAPERQDQELADSVVACIEQDGARAVIIGGGPLAQSAQALQSRLAVPVINPIIAACELMAERLPPDQP
>NZ_CP023667.1|WP_042481997.1|2408217_2409543_+|MFS-transporter
MTSSTLGDGAQAPSASKQELDQIYKKVMWRILPFIFLLWMLAWIDRLNIGFAKLQMQPELGFSETVYGIGAGIFFLGYFFFEVPSNWLLLRIGARKTLARIAFGWGLICVLMMFTKTAAYFYVMRFLLGAFEAGFQPGVLLFLTFWFPAHRRAKAFAVFISASAVASVVGAPLAGFIMTRLDGVNDWSGWQWLFLLEGLPTIFAGILAVMFIVDSPEKASWLSQREKDLIKQELVLDAKAAGPREHSFKKALGNADLWTLTLMFFGIVAANSTLAFFAPTLVRSLGPTDPLQVGLLVGLVYVFGAIFQLALGFSADRRREARLHTGIPVIIGAIGLAGVGLLLGNNTTLAFISLIVAVSGTMGCIPVYWQLPNAVLAGSAAAIGVAFINSVANLAGFGAPFMLGALKDASGNFQSGLWIIAALELAVGIWILSFRKRRQAT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP023667_1	1.1\|515957\|36\|NZ_CP023667\|CRISPRCasFinder	515957-515992	36	NZ_CP023667.1	3522554-3522589	0	1.0

1. spacer 1.1|515957|36|NZ_CP023667|CRISPRCasFinder matches to position: 3522554-3522589, mismatch: 0, identity: 1.0

gtcgccgggccgccccaaggcaaaaactccccctcg	CRISPR spacer
gtcgccgggccgccccaaggcaaaaactccccctcg	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1533438 : 1540610

Pseudomonas_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042480108.1\|1533438_1534071_-	hypothetical protein	A0A2H4JDN1	uncultured_Caudovirales_phage	6.3e-51	52.9
WP_042480110.1\|1534684_1534900_-	hypothetical protein	NA	NA	NA	NA
WP_042480112.1\|1535047_1535401_+	hypothetical protein	NA	NA	NA	NA
WP_042480115.1\|1535408_1536308_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	2.7e-47	36.0
WP_042480116.1\|1536372_1537059_+	hypothetical protein	NA	NA	NA	NA
WP_109442044.1\|1537052_1537178_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_042480119.1\|1537168_1537681_-	single-stranded DNA-binding protein	I6NRL7	Burkholderia_virus	9.7e-42	58.3
WP_157766847.1\|1537664_1537970_-	HNH endonuclease	A0A2I7QWC6	Vibrio_phage	1.3e-12	43.8
WP_042480121.1\|1538162_1538798_-	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	1.1e-21	37.9
WP_080723669.1\|1538797_1539535_-	ERF family protein	B5WZW4	Pseudomonas_phage	3.0e-68	72.2
WP_042480124.1\|1539542_1540610_-	phage protein	A0A1B0VN89	Pseudomonas_phage	1.0e-21	39.8

DBSCAN-SWA_2

1547006 : 1570837

Pseudomonas_phage(31.58%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123794729.1\|1547006_1547999_-	hypothetical protein	Q8LTB7	Lactobacillus_phage	2.8e-37	35.6
WP_123794731.1\|1548154_1548703_-	hypothetical protein	NA	NA	NA	NA
WP_123794733.1\|1548695_1548953_-	hypothetical protein	NA	NA	NA	NA
WP_042480158.1\|1549242_1549629_-	hypothetical protein	NA	NA	NA	NA
WP_003800272.1\|1549952_1550159_-	hypothetical protein	NA	NA	NA	NA
WP_042480164.1\|1550222_1550795_+	hypothetical protein	J7I4J9	Pseudomonas_phage	1.4e-25	45.6
WP_042480167.1\|1550781_1551207_+	recombination protein NinB	NA	NA	NA	NA
WP_080723670.1\|1551203_1551566_+	hypothetical protein	A0A1B1IW31	uncultured_Mediterranean_phage	2.1e-11	38.8
WP_052362845.1\|1551562_1552393_+	helix-turn-helix domain-containing protein	Q8W6P0	Burkholderia_virus	4.6e-49	52.2
WP_042480171.1\|1552394_1553048_+	hypothetical protein	Q3HQZ7	Burkholderia_phage	1.2e-60	55.4
WP_042480173.1\|1553044_1553380_+	DUF1064 domain-containing protein	Q6JIF9	Burkholderia_virus	4.0e-20	51.3
WP_042480175.1\|1553529_1553898_+	hypothetical protein	NA	NA	NA	NA
WP_042480178.1\|1553894_1554578_+	metallophosphoesterase	A0A291L9W7	Bordetella_phage	1.4e-64	58.7
WP_069833387.1\|1555015_1555300_-	hypothetical protein	NA	NA	NA	NA
WP_052362847.1\|1555620_1556127_+	hypothetical protein	A0A2H4J1J5	uncultured_Caudovirales_phage	1.2e-39	65.6
WP_042480183.1\|1556092_1557340_+\|terminase	terminase	A0A2R3UAD4	Siphoviridae_environmental_samples	1.6e-162	67.2
WP_042480186.1\|1557352_1558789_+	DUF4055 domain-containing protein	A0A0S2SYJ5	Pseudomonas_phage	6.0e-105	46.1
WP_042480188.1\|1558788_1559847_+	hypothetical protein	A0A0S2SY77	Pseudomonas_phage	4.4e-73	45.7
WP_042480190.1\|1559985_1560750_+	hypothetical protein	A0A0H5AWD1	Pseudomonas_phage	8.7e-71	66.7
WP_042480193.1\|1560758_1561715_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	4.0e-113	65.8
WP_042480195.1\|1561763_1562786_+	hypothetical protein	NA	NA	NA	NA
WP_042480198.1\|1562782_1563265_+	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	8.6e-16	38.2
WP_052362848.1\|1563261_1563639_+	hypothetical protein	NA	NA	NA	NA
WP_042480200.1\|1563638_1564088_+	hypothetical protein	E7EKX0	Edwardsiella_phage	2.7e-19	32.2
WP_042480204.1\|1564084_1564483_+	DUF4128 domain-containing protein	G8C7Q2	Escherichia_phage	6.9e-11	38.3
WP_042480207.1\|1564543_1564996_+	hypothetical protein	Q3HQT6	Burkholderia_phage	6.8e-23	37.7
WP_042482071.1\|1565126_1565618_+	Rha family transcriptional regulator	A0A249XSL1	Mycobacterium_phage	4.4e-15	41.5
WP_042480210.1\|1565654_1566056_+	hypothetical protein	NA	NA	NA	NA
WP_042480214.1\|1566469_1566973_-	hypothetical protein	NA	NA	NA	NA
WP_042480218.1\|1567657_1570837_+\|tail	phage tail tape measure protein	H6V8Q4	Pseudomonas_phage	2.1e-54	29.9

DBSCAN-SWA_3

1937123 : 1945780

uncultured_Mediterranean_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042480963.1\|1937123_1937948_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.7e-33	44.4
WP_042480966.1\|1937944_1938685_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.2e-69	51.4
WP_042480970.1\|1938799_1939441_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_042480972.1\|1939444_1940503_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.0e-93	50.6
WP_026483346.1\|1940691_1941984_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	5.1e-71	37.6
WP_042482146.1\|1942104_1942485_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	3.1e-13	43.0
WP_042480975.1\|1942549_1942813_-	DUF2024 family protein	NA	NA	NA	NA
WP_042482148.1\|1942837_1943368_-	redoxin family protein	NA	NA	NA	NA
WP_042480977.1\|1943576_1944173_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	3.5e-19	34.0
WP_042480980.1\|1944181_1945780_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	2.1e-58	28.8

DBSCAN-SWA_4

2064953 : 2078585

Pseudomonas_phage(25.0%)

capsid,portal,protease,head,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042481272.1\|2064953_2068319_-\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	3.0e-38	40.8
WP_042481274.1\|2068324_2068627_-	DUF1799 domain-containing protein	NA	NA	NA	NA
WP_157766849.1\|2068695_2069064_-	hypothetical protein	NA	NA	NA	NA
WP_042481282.1\|2069130_2070060_-	hypothetical protein	G8CLB2	Synechococcus_phage	1.9e-48	36.8
WP_042481284.1\|2070063_2070267_-	hypothetical protein	NA	NA	NA	NA
WP_042481285.1\|2070275_2070695_-	hypothetical protein	NA	NA	NA	NA
WP_042481286.1\|2070691_2071018_-	hypothetical protein	NA	NA	NA	NA
WP_042481287.1\|2071019_2072018_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	1.5e-110	60.6
WP_035267797.1\|2072081_2072435_-\|head	head decoration protein	NA	NA	NA	NA
WP_042481290.1\|2072449_2073523_-\|protease	Clp protease ClpP	A0A0E3M0W7	Verrucomicrobia_phage	2.0e-36	44.9
WP_080723709.1\|2073543_2075016_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	5.5e-106	46.7
WP_009459028.1\|2075051_2075261_-	hypothetical protein	A0A219Y8X9	Aeromonas_phage	2.0e-06	50.0
WP_042481297.1\|2075260_2077318_-\|terminase	phage terminase large subunit family protein	K7PGW7	Enterobacteria_phage	1.0e-110	37.8
WP_042481300.1\|2077317_2077809_-\|terminase	terminase small subunit	NA	NA	NA	NA
WP_035267815.1\|2077805_2078585_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	2.5e-33	38.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023667

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection