CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP012738	Pseudoalteromonas sp. 1_2015MBL_MicDiv chromosome 2, complete sequence	3 crisprs	csa3,RT,cas3,DinG	0	1	3	0
NZ_CP012737	Pseudoalteromonas sp. 1_2015MBL_MicDiv chromosome 1, complete sequence	5 crisprs	cas3,DEDDh,RT,DinG,PD-DExK	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012738_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012738_1

129335-129460

Orphan

Consensus_repeat	Method
GTAATTAATATGTAGGTGCGATTTTATATCGCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012738_1

>merge|NZ_CP012738|1|129335-129460|CRISPRCasFinder
GTAATTAATATGTAGGTGCGATTTTATATCGCGCTGTGTATTGTAGACGCTCAGCTTGCTGGCGTTAAAAGCGAAGCTTTTAAATTTCGACGTAATTAATATGTAGGTGCGATTTTATATCGCGCT

>NZ_CP012738|1|1|129335-129460|CRISPRCasFinder
GTAATTAATATGTAGGTGCGATTTTATATCGCGCT	GTGTATTGTAGACGCTCAGCTTGCTGGCGTTAAAAGCGAAGCTTTTAAATTTCGAC
GTAATTAATATGTAGGTGCGATTTTATATCGCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012738.1\|WP_096794221.1\|136563_137466_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381085
NZ_CP012738.1\|WP_096794214.1\|118932_121113_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NZ_CP012738.1\|WP_096794216.1\|128131_129232_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|214702
NZ_CP012738.1\|WP_096794217.1\|130422_130902_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_096794220.1\|134179_136567_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372641
NZ_CP012738.1\|WP_081824564.1\|122552_124151_-\|ABC-F-family-ATPase	unknown	unknown	gnl\|CDD\|237894
NZ_CP012738.1\|WP_096794222.1\|137472_137922_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319805
NZ_CP012738.1\|WP_096794218.1\|131125_131851_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_081824565.1\|121378_121822_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
NZ_CP012738.1\|WP_096794225.1\|140950_141292_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_096794226.1\|141292_141865_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_033016400.1\|117367_118276_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP012738.1\|WP_008136844.1\|127538_128135_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP012738.1\|WP_007379036.1\|117026_117347_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_096794224.1\|139681_140557_+\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP012738.1\|WP_096794223.1\|137947_138685_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377369
NZ_CP012738.1\|WP_096794215.1\|126086_127331_+\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|377099
NZ_CP012738.1\|WP_096794219.1\|132921_134172_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP012738.1\|WP_096794650.1\|124335_125073_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP012738.1\|WP_033030064.1\|125119_125857_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132

Protein	Function_ID	Function_description	E-value
NZ_CP012738.1\|WP_096794221.1\|136563_137466_+\|hypothetical-protein	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	0.000163928
NZ_CP012738.1\|WP_096794214.1\|118932_121113_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP012738.1\|WP_096794216.1\|128131_129232_+\|HNH-endonuclease	gnl\|CDD\|214702	smart00507, HNHc, HNH nucleases.	5.80726e-07
NZ_CP012738.1\|WP_096794224.1\|139681_140557_+\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	2.73274e-14
NZ_CP012738.1\|WP_081824564.1\|122552_124151_-\|ABC-F-family-ATPase	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP012738.1\|WP_096794222.1\|137472_137922_+\|hypothetical-protein	gnl\|CDD\|319805	cd07502, HAD_PNKP-C, C-terminal phosphatase domain of T4 polynucleotide kinase/phosphatase (PNKP) and related phosphatases. This family includes the C-terminal domain of the bifunctional enzyme T4 polynucleotide kinase/phosphatase, PNKP. The PNKP phosphatase domain can catalyze the hydrolytic removal of the 3'-phosphoryl of DNA, RNA and deoxynucleoside 3'-monophosphates. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.17851e-30
NZ_CP012738.1\|WP_096794220.1\|134179_136567_+\|hypothetical-protein	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	5.9571e-12
NZ_CP012738.1\|WP_033016400.1\|117367_118276_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	4.18651e-09
NZ_CP012738.1\|WP_008136844.1\|127538_128135_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.02923e-14
NZ_CP012738.1\|WP_081824565.1\|121378_121822_-\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.00562e-07
NZ_CP012738.1\|WP_096794223.1\|137947_138685_+\|hypothetical-protein	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	1.28715e-08
NZ_CP012738.1\|WP_096794215.1\|126086_127331_+\|UPF0149-family-protein	gnl\|CDD\|377099	pfam03695, UPF0149, Uncharacterized protein family (UPF0149). The protein in this family are about 190 amino acids long. The function of these proteins is unknown.	0.00103234
NZ_CP012738.1\|WP_096794219.1\|132921_134172_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.02187e-65
NZ_CP012738.1\|WP_096794650.1\|124335_125073_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	3.01205e-20
NZ_CP012738.1\|WP_033030064.1\|125119_125857_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	4.57977e-19

>NZ_CP012738.1|WP_096794216.1|128131_129232_+|HNH-endonuclease
MIGAMQQQLDFIAYIQRLLVEGDFSATYKFALLHALADISIEKHHADPQAQLQIKFDELVDKFITLYWHQASPFGATGNNTEQLLLQNTDSSKQAKIITTLHDAKLNNINSISQLKKSQGWKNIRSSTLKTIKEGPLWLLQKLNGKEECFLYPHIKGQSYITLNAGIASCFRRFYDLVVYLAKNAWLQKIQSIKHNQALIGPQSQLHEFLFGFDRNALSKAKPVLIELQHGNCFYCEKPLNSKTEVDHFIPFARYANDLGHNFVAAHSTCNNSKSDFLAAQLHRERWQEQNLVINSQHLTTELSDYFNCDSDKSLSVSDWAYQVAQANSAKLWVAKGSFEEAASFKYQQPNAGLGLVAEEKPRYDV
>NZ_CP012738.1|WP_008136844.1|127538_128135_+|class-I-SAM-dependent-methyltransferase
MSNATLTYYDQNAKAFSDSTLNVDMSALYAEFLPHVAQHGSILDAGCGSARDAAFFKAQGFTVSAFDASPELAELASSYLQQLVAVKTFQQLNCVNQYDGIWCCASLLHVPKAELPQVFLNLQNALKPNGVLYVSFKYGESERVHNGREFTDLNENALTHLLSHTQLKAIKQWQSVDKRPERESEVWLNALIKVVHVL
>NZ_CP012738.1|WP_096794215.1|126086_127331_+|UPF0149-family-protein
MSPTKIRNDVVKLSELSTKKPDYYFIQGYLMGLGVLPQMLNPSEWQPDLFGDLNVQNATELKYLESLMALYNQCMEKVIQNELKMPAKCSLSKQDYRDSLKPNMPLPSYCKGVLQALKHINKRMLDAEQKQALNNLNSVLKAFSSEKAAAKEFGEFAQYNAQEYKRNYVYFMADAIFELRFSNDLTLSDEDEAVFNNSFLDEEPNELDELDELLGLVLADTELKALEPMQMLLEIMEGGLITKQFIKDNTGHFWGLQETRPYMMLRAHRAKIHALHGYTVKAQSELEELLKLNPNDNQANRFLLMNCLIINKEWEKLEALLADFDFQELHATASRALSAFVMHGDSKPANDYKKMLQQQNKHFTKILTGQEKLKEQQPPYYSPGSKEEVGVYLESLGKQAWISVPASLFWLRKK
>NZ_CP012738.1|WP_033030064.1|125119_125857_-|transporter-substrate-binding-domain-containing-protein
MNKLITLFICLIFNVSPTVFACERTLSVASHDAFWPPYVLGINGELQGAEVDALNIIFAGSPFCFKVELLPNSKRAFVELKHGRIDLGWAASYTDNRAKYVHFSESYRTEVMRLYENKNNQHNVDSLEDIFKQGLTVGANFGSYYGEEFEQYKTTYKKQIEYTSAVSKRFEMLNKQRIDFAIEDELASAYFIKRSSNLAPVKNIKFINKDAIHLMLSKDTVSVEELEVINKHIKNNQTALKALFE
>NZ_CP012738.1|WP_096794650.1|124335_125073_-|transporter-substrate-binding-domain-containing-protein
MKTIIVVFAVLLLSTFNTHACNKTFEVGTNENYWPPYVELKNGVLSGIEINVIKTLFKGSPFCLKFSVLPSSLRAQEELKQGRIDIMFAATKTKKRSEFAYFSQSYRDEVMLLYKNTLSPNLSSIEQLFSQGFSIAVNRGSYYGAQFEQLKKAYPKQVVLISTADKRFEMLNKQRVDFVIEDALSGLFFLKQSLNIEPVTNMVFFNKAPVHLMLSKKTVTLDELSVINQLIQKNKKATERIYQTY
>NZ_CP012738.1|WP_081824564.1|122552_124151_-|ABC-F-family-ATPase
MISTANITMQFGAEPLFENISAKFGNGNRYGLIGANGCGKSTFMKILSGALVPSAGNVSITPGLKVGNLSQDQFAFEEYSVVDAVIMGDVELWKVKQERERIYSLPEMSEDDGMKVAELESVFAEMDGYTAESRAEEILLEAGIDKEFHYGLMANVAPGWKLRVLLAQALFANPDILLLDEPTNNLDIHTITWLANELNKRKCTMIIISHDRHFLNSVCTHMADIDYGELRIYPGNYEKFLEAAGLQREQLLAENAKKSAEIDELQDFVNRFGANASKAKQASSRAKKMDKIKLDEVKSSSRMSPSLSFDEGKKMYRQALEVNKLGHGFDGEKLFTGGDLLLEAGAKLAVIGENGVGKTTFLRCLVNELKSLEGEIKWSENATFGYCPQDSTKDFDNDLTLFDWMSQWRTVNHNDLMVRGMLGRLLFTADDSNKKARNCSGGEKNRLLFGKLMMQDVNVLVMDEPTNHMDMEAIEALNNALKDFEGTLIFVSHDREFVSSLATRIIDIKDKKVIDFQGTFDEYLSSCEEKKA
>NZ_CP012738.1|WP_081824565.1|121378_121822_-|hypothetical-protein
MYSSKKLLTGRYTCENQFYSVTICTRKRTQIFKNFESACIAIRGLVYMQNKVNTICYTLMPDHLHWLFQLKDLPLNDVVRQYKSITTVNINKFNYSNGSIWQQNYFEHQLRTEEDLINQARYIVANPLRAKLVNEVGEYPFWDCVYL
>NZ_CP012738.1|WP_096794214.1|118932_121113_+|catalase/peroxidase-HPI
MSNPKAGQCPVMHGSNTKTSNPNTDWWPNALNLDILHQHDTKTTPYDSDFNYAEAFKTLDLEALKTDLKHLMRQSQQWWPADWGHYGGLMIRMAWHSAGSYRLADGRGGGGTANQRFAPLNSWPDNGNLDKARRLLWPIKKKYGNKLSWADLIILAGNMAYESMGLKTFGFAGGREDIWHPEKDVYWGAEKEWLAPSDGRYANVDKPDTMENPLAAVQMGLIYVNPEGVNGVPDPLKTAAQVRETFARMAMDDEETAALTVGGHTVGKTHGNGKAENLGPEPEAADVHEQGLGWNNTTTRGIGRDTVTSGIEGAWTTHPTKWDNDYCKLLLSYEWELTKSPAGAHQWEPVNIKEEDKPVDVEDPSIRLNPIMTDADMAMKMDPAYRKIIERFYNDFDYFSDVFARAWFKLTHRDLGPKSRYLGADVPSEDLIWQDPVPTVDYTLTNAEISDLKTTLLNSGISAADLISTAWDSARTYRGSDHRGGANGARIRLAPQKDWQGNEPARLATVLSALEKVQAGLSKPISIADLIVLGGTAAVEQAAKSAGVDVTVPFAPGRGDATDDMTDAESFDVLEPIHDGFRNWLKKDYVVSAEELLLERSQLMGLSAPEMSVLLGGMRVLGTNHNGSQHGVFTSNVGTLSNDFFVNLTDMAYRWEPTEKGLYNIVERTSGVTKWTATRVDLVFGSNSVLRALAEFYAQDDNKERFVHDFVNAWVKVMNTDRFDIK
>NZ_CP012738.1|WP_033016400.1|117367_118276_-|tetratricopeptide-repeat-protein
MRYYISLLFVCFTFFLATVNAAEQRPEVLTAQEQQHALSQLKEPMYKPLLERYVLDELKAVRQDQQKLREDVTKQVTHAQLDTADRALTYTTDTINNVFFIITATASILVLVGWNSLRDVKNKVEDIVNTRVSVITDEYEDRLKILEEKLRVRSEEILSNQERISVTNEVHSLWMRANLESDFANKIEIFDEILKRKPEDVEAIAYKADALLEINETAQAIELCNQAIDIDSDYGYAYWQRACAFALIHEHADALADIKMALDYSPNLRNELLHESAFASLHDNESFNTIVAGEASGIQLNL
>NZ_CP012738.1|WP_007379036.1|117026_117347_+|hypothetical-protein
MQISDERKIRLMYRVEPGCLGPDGANHIEDFCRFANKHIKSPYYGLFVFLPRYDKQKDERQYSVNSRNLSQVQAKAYLNHFDIDIDNFEEQLDELLAKAIDLYFKR
>NZ_CP012738.1|WP_096794217.1|130422_130902_+|hypothetical-protein
MYENRFTKWMRWCDRDTPQGINYPGIYICAISEEDISGKNFSWTKDIVYVGMTNSLKGLTGRLKQFDNTIKGKSGHGGADRIRYKYQNYNELVNKLYVAVATFTCNVKSNSPEDLRTMGKVAKFEYDCFARFTESFGYLPEFNDYAKSPKYSLTIERKG
>NZ_CP012738.1|WP_096794218.1|131125_131851_+|hypothetical-protein
MNIKEQAIKKLANSMRIYVETHIDFQRLKSIDIEEAVDNLDRAFESKLEAFHSLYDVTKGDFDYFSYADTASLILMRNAIHHRDHLLFQSWNHNMALDQGYKNHLGAEFLLAGYAVLDSPVRMRYFYKLEDFYLRIDESLQSPYIESRMGSKNRKKLLNQLESELNFQVIKQKAETERYPIKQVYINVMPIFISAVCRVFTALKEKGVEFKGFDAKAYETPFTNELTVDFSKVIYEPLRIM
>NZ_CP012738.1|WP_096794219.1|132921_134172_+|DNA-cytosine-methyltransferase
MSTRMDQNKQGVYIDLFSGCGGLSLGLGNAGWKGLFAVEKDSMAFNTFKHNLIDGKNSHFEWPSFLPKKETTIQELLEKYPQELTSLRGKVDLIAGGPPCQGFSLAGQRNEKDPRNKLSEEYIKMVELVSPKYILLENVRGFASSFKSATGKKAKLPYAMVVKKKLENLGYAIFHDFLCSADFGVPQKRTRFIMIGIKKEHLKNELLNPFEKLLTMRSDFLKSKGLPDTKIRVKDAINDLLIENNELSFHSGNELSGFKKLKYAPKAKPNAYLKLMRKGMGKKAPNSLRIARHKPDTIVKFKFIQKICKPGITLNDEMRALVGTRKQAITVLNPEQPSKTLTTLPDDLLHYSEPRILTVREMARIQSFPDRFEILGKYTTGGNRRTQECPRYTQVGNAVPPLLGEALGTLIMNIKE
>NZ_CP012738.1|WP_096794220.1|134179_136567_+|hypothetical-protein
MRKIRHFKTNTLLKNLIGKDLINDDNIGVIELVKNAYDASSPNTIIKFNYLNTDLTSSELIIADHGSGMSESDINDKWLNVAYSEKKAIKQNEGAYLAGNKGVGRFSCDRLGEKLDIFTRVKGGQLLHLSIDWNNFEIEGKKDLTIQEIDVFLNTVDDSFVLECCGLNIGDSGTILLISKLRSHWSRDKLLELKRHLQKFINPNQLFSKNEFKIELIAEEYLELDKEENQKGKMVANGEIKNLIFENLKFKSTYIESVTIDGGKNIRTTLFHDGNKVYWIEEKNKYYNFVKKVSTTIYFLNAYKKSYFKRQTGIRSIDFGSIFLFLNGFRVAPYGDRGNDWLKLDIRQGQGKSRYFGSRDLVGRIEINDDDDFFEPISSREGLKENDAFSYIKEYFFYETLRRLEKFVVEGLSWDSVPEEIRKTIKDNLDWDKTREQYSESNEKKKRRFSLGILSLIGLSKKNLSKFWFNTEYLAELADEKSEEIKKIIQDISNFDGDIVDDSFRINLDKITSLIKDKERKLQEAATEVLKLKENITENEETLSLLELDLEDKKEVISSLESQNETIQAQSLFLKSITSQDAKSLLNYHHQICNDAATIENYIGRAVRALKNDGNIKQALKFLEKISKSNKKIVATAQYATKANFKSGTKKEMTDITNYFEQYLNNVASEFSASGLQVSILNKVSSPFEMPIKRIELSILIDNLVSNASKAEANKMNITMHLLSENVLEISFSDDGKGLSNEVDKENIFDFGVTTTNGSGLGLYHAKEFMNSIHSDIEVNASLNNGLEIRMEFRK
>NZ_CP012738.1|WP_096794221.1|136563_137466_+|hypothetical-protein
MRLTYSILWFDDDEEYLESVDLDYIRTEFSKWGFNCELNLVHDKGEFDNAAPYQDYDLILVDYSLESVEDGLYGQDFIKKVREQQLLTDVIFYSSHAISHLWDAIRKEKLEGIFIASRNNGINDKLLRVAKQSIHKILDLENLRGIVMAEVGNNDEYLKKIAKNSFEGLPEIGQKELFQSYVNKISEQSDNHLKKLENAVNKSNFDELFCLFDSAKKWNFCQSLAKVVPDLKIKDQGDYMADVLQKRNFLAHGIPIKQDDKSLKFNHMGKEYIFDDVESELIRVSLTKYAALFKRLATGE
>NZ_CP012738.1|WP_096794222.1|137472_137922_+|hypothetical-protein
MKKIIVDLDGTLALNLHRYHFIDKSLNKKVDWVSYFEACDKDQPNKSVIETIRALREQGHQVHIFSARGDIVKAKTINWLETHSVPYDRLTMRDMDSFTPDEELKKSWLLQYYPDYKKDILCVFDDRDKVVKMWRSLGLACFQVAEGNF
>NZ_CP012738.1|WP_096794223.1|137947_138685_+|hypothetical-protein
METWRLYERFIARLVSEQLSTAYVVSANAKVTGVISGIRRQVDVLIDYRFDTVNTNRIIIDSKVRNRKIDINDVESFRGMMDDVEAKHGYLIATSGFTKGAKVRAEELVSLRILPIEYLKSFSLADWPKCNGKHNCNGYVFWDGFPSFNLTLKNLDSGKLEFKQNIHYVGKCDVCYYFHVYCLNCKTTLSFDPNASCEDYGKQCQCKLPWFWITSVEQDSFNKKSAELHSVYGKELITTVSRMSI
>NZ_CP012738.1|WP_096794224.1|139681_140557_+|NERD-domain-containing-protein
MDDLLNQGLSLLFVIGSVYSLLGVLFIKIWLHQKNAKLPVDRKKLKRVAAQTLNEQVNDKVLDVIGLVFLSALIVTMPFALKGIAEMFASGKLNYFLIIVIALGLTYVARKLWVKSNDLIKLKLGRDAELAVASELIELQSHGYQVFHDIQTDGFNIDHLVVGPNGIFAIETKGRHKRIKDDTNYKVKFENNHLAFPSWFESKPLEQAQNQANWVNKWLYESTGFNTPVLPVLCFPGWFVELKQRPIFPIVSHKQIVKTILSMRQVSLNQEQQRAICYQVVQRALNDSKAI
>NZ_CP012738.1|WP_096794225.1|140950_141292_-|hypothetical-protein
MPAAHLAGYSLIVFMIGTFASGILFSRISIKHINKNMEKDGVLPPSWDKGIGASVSFYIFSMFFERSRIPTPMFDGRFVAKYSRPIDKVIGAVHLISVTGMMLCLCIVSYFSK
>NZ_CP012738.1|WP_096794226.1|141292_141865_-|hypothetical-protein
MPKYHMVALEQKALGLFKELQVKYQAELQRFMNTNRASRRGTVWSNPNRGVHIAKSARHSTKLDISSTAEFRKIKYIENTGRWLGNGMILLDGAFRANSVYNNYKNGGDWQRSLSTELASFGASTASGIFVGSITTTALSSLLMLTPYGWVIAISVGLYVGFTASIKMNNFMKKTSENIYDRKPIFEGTF

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Crispr_ID: NZ_CP012738_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012738_2

810864-810990

Orphan

Consensus_repeat	Method
AATATAACGCCAGCCCTGTAGGCGGGAGTTTACCGCGCGCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012738_2

>merge|NZ_CP012738|2|810864-810990|CRISPRCasFinder
AATATAACGCCAGCCCTGTAGGCGGGAGTTTACCGCGCGCAAAGATAGGAAAACCGCAAAAGCGCGGCATAAAGCCCCGCCTACAATATAACGCCAGCCCTGTAGGCGGGAGTTTACCTCGCGCAAA

>NZ_CP012738|2|2|810864-810990|CRISPRCasFinder
AATATAACGCCAGCCCTGTAGGCGGGAGTTTACCGCGCGCAAA	GATAGGAAAACCGCAAAAGCGCGGCATAAAGCCCCGCCTAC
AATATAACGCCAGCCCTGTAGGCGGGAGTTTACCTCGCGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012738.1\|WP_033029706.1\|815306_815498_-\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|377738
NZ_CP012738.1\|WP_096794594.1\|802479_803253_-\|flap-endonuclease-Xni	unknown	unknown	gnl\|CDD\|181896
NZ_CP012738.1\|WP_007376298.1\|816779_817559_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_CP012738.1\|WP_096794593.1\|800326_802015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_002960265.1\|818308_818899_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|183877
NZ_CP012738.1\|WP_096792602.1\|809362_810460_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NZ_CP012738.1\|WP_096794592.1\|795842_798863_+\|M6-family-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|368494
NZ_CP012738.1\|WP_007376316.1\|798930_799938_-\|isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|181606
NZ_CP012738.1\|WP_096794597.1\|810995_811772_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP012738.1\|WP_096794604.1\|817540_818275_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]-imidazole-4-carboxamide-isomerase	unknown	unknown	gnl\|CDD\|240083
NZ_CP012738.1\|WP_096794603.1\|816174_816789_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	unknown	unknown	gnl\|CDD\|235067
NZ_CP012738.1\|WP_007376313.1\|802032_802410_-\|DUF3192-domain-containing-protein	unknown	unknown	gnl\|CDD\|378660
NZ_CP012738.1\|WP_096794595.1\|804681_806217_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP012738.1\|WP_096794601.1\|814000_815272_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180392
NZ_CP012738.1\|WP_096794596.1\|806421_808209_+\|M61-family-metallopeptidase	unknown	unknown	gnl\|CDD\|226483
NZ_CP012738.1\|WP_157770574.1\|808537_808876_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371067
NZ_CP012738.1\|WP_096794602.1\|815500_816055_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_096794598.1\|811764_811971_-\|ParD-like-family-protein	unknown	unknown	gnl\|CDD\|314732
NZ_CP012738.1\|WP_096794600.1\|812827_813133_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_007376311.1\|803263_804607_-\|LOG-family-protein	unknown	unknown	gnl\|CDD\|378752

Protein	Function_ID	Function_description	E-value
NZ_CP012738.1\|WP_033029706.1\|815306_815498_-\|DUF1289-domain-containing-protein	gnl\|CDD\|377738	pfam06945, DUF1289, Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	9.08159e-10
NZ_CP012738.1\|WP_096794594.1\|802479_803253_-\|flap-endonuclease-Xni	gnl\|CDD\|181896	PRK09482, PRK09482, flap endonuclease-like protein; Provisional.	8.42099e-121
NZ_CP012738.1\|WP_007376298.1\|816779_817559_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	6.14843e-151
NZ_CP012738.1\|WP_002960265.1\|818308_818899_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|183877	PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	1.17204e-88
NZ_CP012738.1\|WP_096792602.1\|809362_810460_+\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	8.50915e-24
NZ_CP012738.1\|WP_096794592.1\|795842_798863_+\|M6-family-metalloprotease-domain-containing-protein	gnl\|CDD\|368494	pfam05547, Peptidase_M6, Immune inhibitor A peptidase M6. The insect pathogenic Gram-positive Bacillus thuringiensis secretes immune inhibitor A, a metallopeptidase, which specifically cleaves host antibacterial proteins. A homolog of immune inhibitor A, PrtV, has been identified in the Gram-negative human pathogen Vibrio cholerae.	1.80996e-169
NZ_CP012738.1\|WP_007376316.1\|798930_799938_-\|isocitrate-dehydrogenase	gnl\|CDD\|181606	PRK08997, PRK08997, isocitrate dehydrogenase; Provisional.	0
NZ_CP012738.1\|WP_096794597.1\|810995_811772_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	6.90083e-136
NZ_CP012738.1\|WP_096794604.1\|817540_818275_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]-imidazole-4-carboxamide-isomerase	gnl\|CDD\|240083	cd04732, HisA, HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.	7.99274e-102
NZ_CP012738.1\|WP_096794603.1\|816174_816789_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	gnl\|CDD\|235067	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE.	1.22107e-110
NZ_CP012738.1\|WP_007376313.1\|802032_802410_-\|DUF3192-domain-containing-protein	gnl\|CDD\|378660	pfam11399, DUF3192, Protein of unknown function (DUF3192). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.	3.72491e-51
NZ_CP012738.1\|WP_096794595.1\|804681_806217_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.96185e-54
NZ_CP012738.1\|WP_096794601.1\|814000_815272_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180392	PRK06084, PRK06084, bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase.	0
NZ_CP012738.1\|WP_096794596.1\|806421_808209_+\|M61-family-metallopeptidase	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	2.07824e-109
NZ_CP012738.1\|WP_157770574.1\|808537_808876_+\|hypothetical-protein	gnl\|CDD\|371067	pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.	2.22118e-17
NZ_CP012738.1\|WP_096794598.1\|811764_811971_-\|ParD-like-family-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	1.48549e-26
NZ_CP012738.1\|WP_007376311.1\|803263_804607_-\|LOG-family-protein	gnl\|CDD\|378752	pfam11892, DUF3412, Domain of unknown function (DUF3412). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with pfam03641.	1.46333e-83

>NZ_CP012738.1|WP_096792602.1|809362_810460_+|ISAs1-family-transposase
MSLFSHLELVKDNRSHINQHHNLVDVLFLIITAVTSGCENWQDIEVYGESKLNWLRGFRSFKNGIPTRHSIARIFRTVDTDSLLLAMYSWVNQNRVKSAHPVIAFDGKTIRGASKHIADKLHLVSAFDCEAGLTLFHQTVGSKTNEIPAVRDLLKILDINNTVITLDALHCQKETLKQLISRHADYLVQAKGNQKKLYSAIQDAFTHQYESENSEILSHVTQDAGHGRKEVRTIDCLDARLLPSEIKESWPSVRTIVAVQRERTKGNRTSIDTHYYLTSLTDNILISKAIRQHWLIENQQHWILDVVFKEDACQINEPLSAQHMALFRRVVRNMIKQHTKSKGSIRSKCVRACYDDAFREELLFG
>NZ_CP012738.1|WP_157770574.1|808537_808876_+|hypothetical-protein
MSTLAATFALSLSSNAIADEGMWQPHQLPELESILKAKGLEIDVESISKLTEFPMNAVISLGGCTATLITYLKYKMGLIKQAKARYLIACMSSQDLIMPLFALHYLSNHLAS
>NZ_CP012738.1|WP_096794596.1|806421_808209_+|M61-family-metallopeptidase
MKKLLALSIVAACSTSAFADVNYELKISEPQHHLGNVSVEFPKSAQSHIDVKLPAWRTGRYEILNLANGVRYFNAKDEDGKELTWEKIDHSTWRVHLNKPTEVNVDYQVYANELGKRARHIDDSHAFIDASGFFMFSESFRQEPVTVNLDIPKKWRSVSGMDNLEGKNSFKAANYDVLVDSPIETGINQLHTFEVDDREYDLVVWGDGNYDVDLMLTDLKKLVATGNVIWDGYPYERYVFMVHATSGAGGATEHLNSTIIQRPRDRFGSREDYLGFISTAAHEFIHTWNVKAYRPQGLVPYDYTNMNYSKLLWIAEGSTSYFEDHLLVRSGIQTTDEFFKVMSKTINRHLQTPGREVQSASETSFDKWINQGGDHARNYSTNIYSEGSLLSLALDIDLLEKSQGKISYRDVHKALYNNHKMPAGFTDVDVLNILKDLTGRDYSSWWQKNVESPASINFDELLAKVGLKYERPEKAKALASIDATAKNTGELLTLSYVRRGGSAWEAGLTTDDKIVAINKHHVGKDLKTSLETFKAGEKVTVDYIRRDALDSLTLVLSEDFDKPKKVVANKDATLEQKALFKAWIGVEHPAEVKKD
>NZ_CP012738.1|WP_096794595.1|804681_806217_-|GGDEF-domain-containing-protein
MSDKSNATDKKLKQAIDARMAVEDARKYQVDTLSDFSAKLSLSCKGLDTELDNRLAKFRAALIKGVSFEDLSPLISETIVLLKNQESVQLSQQRDLYSSVQNAGKQLQKTKGLPEDTRRTLRHLLDHEINQVHSTHDFIPLLDQLISFYHQTLSLKLEPASDDECTATPELAQELLKLANELVLEDEATEEIKYIKNCITESDTLDALLKASINIISVIVKNINKERKSAQSFLSSLNQTLEDLHHSIVSTSKHSKSMGVEFDILNKNIESKIKNLNVQTQNATSISSLKELVDNELKSLSKDFIAKEKLERTDREMLVSSFDEINGRIGSLESKLTKYKKRLNEQRFKSLLDSLTKLPNRAAFDERYNHEIHLFNVQSSDVTLAVIDVDHFKSINDRFGHTAGDITLQVIAKALQKSVRKSDFIARYGGEEFVLLMPSTSLINATAPLDKLRKIIKSIPFKFKDKQIEITISLGVTQLKKGDTPIIAFDRADDALYEAKNTGRDRLCISK
>NZ_CP012738.1|WP_007376311.1|803263_804607_-|LOG-family-protein
MLIQLNPTGVLDLLSQLEVDLLEQSSTSERYKLFRNCALAVLNVGSHTDASNEIYDKYQDFDIRLLSRERGIKIELENPPLTAFVDGEIITGIHEHIFSVIRDILFICQKYEKNLKEQKAITHMVFDMLRNADALRVNSEPSMVVCWGGHSINEVEYKYTKQVGYELGLRGLNICTGCGPGAMKGPMKGATIGHAKQRIKDNRYLGLTEPSIIAAEPPNPIVNELVILPDIEKRLEAFIRTAHAIIIFPGGAGTAEELLYLLGILLHPDNAKQCMPVILTGPKESEAYFKELCEFVEMTLGKEALNKFEVIIDDPKLVGQTLKSAMTDVRNYRKSEGDAYYFNWTLKIDNDFQQPFAPTHENMAGLDLHLNQPKQLLAANLRRAFSGIVAGNVKDEGIKAIKQNGRYILSGEPALMKDMDKLLQAFVDQGRMKLPGSKYTPCYEIKA
>NZ_CP012738.1|WP_096794594.1|802479_803253_-|flap-endonuclease-Xni
MKPHLLLIDALNLIRRIYAVDVNQKHHSDDQMIEACCARVAHACKKLLNTTNATHAIAVFDGDRSWRYHFYKNYKHSRSPMPQILKDALIHFKTAIEETGIVVFEPINDEADDIITTLACKAATNNVSNTIVSTDKGFLPHLGQYITIYDYFKKQYLDEHSIKERFGVQQSRLVDFWALAGDKTNDIPGVKGIGIKSAQQLINNYNTVEQALEDKLLSPSIHKKLEANMDMYVISKQLVSLRTDINLGFSLKQLRLS
>NZ_CP012738.1|WP_007376313.1|802032_802410_-|DUF3192-domain-containing-protein
MLKKFFRYLILGLGLYALIATLVITFYKDDPQAMIWQDREAFNKRYIEKLSLEQPTTINSVLDYLGSPDLTFAKRNSDEVLQIIFYRTQHKTSDGITTIDECTGLLFKNGQLILWGPSAYKKYQD
>NZ_CP012738.1|WP_096794593.1|800326_802015_-|hypothetical-protein
MNEPISVKLNQLLENTKLFLTLYNVKKQWQTVYPAVCKLSEQYRELYEQYPVALQARCAVFNPKYSYSVNLVINQCVLTAALCKSQQYNNQLSELYICAALVDHLCVGEQLNKLSKQLKFSDSDKRIWQLRHQLTAKIILTGGDSAKPITQVLAKLTKYKQALVTTPKIMLYDGGITLVAIANIIAMNITYSPPKQHISLFKALGDLYIRTPNLFAQQLIKFLIAHIGPLLPGSRVIYNDQLMVYLASDNQQRHILINVENKNKIAWYRVKALLNSNAIQWQSNDSRIQISVWDSEHITSTANILNNGSLALIELISRLKLQHEYSYKALSQIMAPYPNVIENLCEAVKPYNNEHQAAKSLKHSLSMVGYFNAPAIIQRVIFEQLVKVTPHPLQQFVLTRLECIVEIIALLVSKNKMIQFEHIALPLYGYAYFLLTQCSTHISRKIMIDETPNTTLNTPISAFFGVSSLETEQLKAQLTLLLSDNPWAIALLEAEHLPKKQLNERSKLWVAIKALTQTVFKPQLKLSTWQQQILDQQLTTQKWENHHLFNEQLQELALSNTI
>NZ_CP012738.1|WP_007376316.1|798930_799938_-|isocitrate-dehydrogenase
MAKQTITVIKGDGIGPSIIDSALEILKAAGCDFDYEFVDAGLAALEKTGELLPQETVDTIARNKITLKGPLTTPVGEGFTSINVTLRKQFGLYANVRPVKSFVGTKARYDDIDIITIRENTQGMYSGAGQVVSEDGNEAQAKSIITREGAEKIVTFAYELAVREGRKKVTAVHKANILKSTSGLFLKVAREVAERYPQIESNEMIVDATCMKLVMTPEEFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGEDAAIFEAVHGSAPDIAGKNLANPTSVILASIQMLEHLNMGDTAERIRSAVADVIKSGDRTTRDLGGSHGTTDFTQSVIDRL
>NZ_CP012738.1|WP_096794592.1|795842_798863_+|M6-family-metalloprotease-domain-containing-protein
MKKVMLIALLTTLLSPIVAANNISPHDVGITNEERILYWLKKRDQISSSELDSSFKSYMSNKEAASHSIKNGFRQFKSSSNVFSNTNKQQVAFSTSLVPDQSVNDVKVLAILIDFPDLKHDDNQLVEQDTDMFYAEYSTEHYQQMLFNTQGYTGPDGQSLKTAADYYKVASGNSLNFNGQVYGWVTADSNAKIYGERQGSTRDINAPALIKEAVEKAVAKFNINLADYDLTDLDDIDGDGIVNEPNGIIDHVMIFHSSIGEEAGGGYLSTDAIWSHRYYVFDENSGPSEIAGSNIKLFGYTINPIDAGIGVVVHEFGHDLGLLDEYDLQSNTVGEPVASWSVMSTGSWAGSPRGSEPVMFSPYALEYLQKRYRGNWVNQLTLDMDEIEANSQQTLINTASISQLQNQIKITLPPRLEKFRAPVEGDFQYYSNTGDNISNSLANTIALPSTTETLTLSFIAYYSIERDYDLVQVKVNGEPIASNYTQALNPYYGDIGPYISGDSFLNSDAKQPNGYLTHKFDLSAYAGQTIDLKIEYITDANTHYYGFVVDDMRIEQSDTLIWQNNAQDQVNTEFNGFEKIGNYTYASPSHYYLQLRSYTDVDSSLQAEQYSPGLLLWYSNESQADNNTTEHPGSGFALVVDADQRSINKGSTQTPAASAIQIRDAAFSLYQQRAGLGDDDLSAITQFTDKNDYSFSAQKPSGVMLPQVGFGFNIINQSADSEDIEVELNYDVTKGINFTKTGLTVNFNVEGFALTPSDTFTWNFDDGSSSIELTPTHEYQDYGTYNVEFMASNGTSDQVAVVQVTLAEPLSVNEIEYEINQGTLTAEASLTGGVAPYTYNWQLGDGSTLTTQSLTYNYLYSGDYQVTLTVTDNEGTEQTKAIDVTATVPLSINANATVSDLSAQFNAQVTGGFNSYTYSWDFGDGSALSNLQNPIHTYQTDGTYNVTLNVTDTQTNDTFTKELSATVQKQQSSSGSSGGSLSGLLGLLLLGLFRFNTNLHKYTRLV
>NZ_CP012738.1|WP_096794597.1|810995_811772_-|type-I-methionyl-aminopeptidase
MSKVTIKTDAEIELMRESGKLLAQVFKMLDDFICEGITTLDIDTKVESYITNVLHARPASKGQYGYRYSLNSSVNDVVCHGVPNNIYKLKNKDILNIDITLEKNGYISDSSKMYTFAATSSEAKSLVKTTYDAMWEGIKVVKPKATLGDIGYAIQKHAESSGYSVVREYCGHGIGKEMHEEPQVLHYGKPHTGLVLEAGMTFTIEPMINQGSKKVKTKKDGWTVVTKDKKLSAQWEHTVLVTETGFEVLTLRDEEKSA
>NZ_CP012738.1|WP_096794598.1|811764_811971_-|ParD-like-family-protein
MGIVKISDGLHEEIRKSSNIMSRSINSQAEFWIKIGMLAELNPTLTYQEIIKKQLIKEKLTIQELLHE
>NZ_CP012738.1|WP_096794600.1|812827_813133_-|hypothetical-protein
MKRSEFLTDGVTSQFRSLDDQHRLLAEAYRNYFDELYILDEELLKKVNLFLIFNQPLSNLHIEVNFKTQPTKQLDAWIARLKTQCEHRTSIYKHLLEIAAS
>NZ_CP012738.1|WP_096794601.1|814000_815272_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKLESLALHHGYESEATTKSAAVPIYHTSSYTFDNTQHGADLFDLKVPGNIYTRIMNPTNAVLEQRIAAMEGGIGGLAVASGMAAITYAIQCLCEVGTNIVSISQVYGGTYNLFSHTLPRQGIEARMIKADDFTAFENAIDDNTRAVFCESIGNPAGNIVDIERLARIAHSKGVPLIVDNTVATPYLCRPFELGADIVVHSLTKYINGHGTAIGGMIVDSGKFDWKANATRFTMMNEPDPSYHNVVYTEAFAEAAFIGRCRVVPLRNTGAALAPKNASDILIGLETLGLRMDRHCENAQHLAEYLENHPKVLWVNYAGLKSSPYNEMSQKITSGKASGILSFGITGGLEAGTRFIDALNMILRLVNIGDAKSLACHPASTTHRQLNDEELANAGVSRDLIRLSVGIENIADIIADVSQALDKA
>NZ_CP012738.1|WP_033029706.1|815306_815498_-|DUF1289-domain-containing-protein
MRQLNQNKKPSKFKTDCLGICERRSGYCTGCGRTNEEIFDWIILSEDEKKAILETPRVDIRKT
>NZ_CP012738.1|WP_096794602.1|815500_816055_-|hypothetical-protein
MKNYITPSFVAFILVTAFILAGCTSKTDQTTTTTTTTTTNQSVKTTVTPGECSTINNLLNGYESGFNSIKTDKVNNQFTNQWRTNTHMIGANCTVTLNKSGQASYQCQTPVKTQTQTIKSHQKLAKQLRQCLTKAGWFESQKETASSIYSTFVLDTKTPVITLATNQEGNGFSSRFEIAPPLGL
>NZ_CP012738.1|WP_096794603.1|816174_816789_-|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE
MQVTQQNQAQVDFAKSDMIPAIIQDARSGVILMQGFMNSEALAVTLDTNKVTFYSRSKSRLWTKGESSENYLNVVSVHTDCDYDSILVLANPEGPTCHLGTQSCFGDEAKPSLSFLAQLEDVIVARKNDDPSKSYTASLFAKDLSRSCQKVGEEGVEVALAAMKHDNDELTNESADLIYHLTVLLQRQGLALEDVVKCLQGRHK
>NZ_CP012738.1|WP_007376298.1|816779_817559_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MLSKRIIPCLDVKDGQVVKGVKFKGHEVVGDILTMAKAYSEAGADELVFYEISASVEKRLLDVNWVESIARNIDIPFCVAGGIKSVADAARVLERGADKISINSPAIARPELIKELHDEFGKQCVVVGIDSFFDEITGEYLVYQLTGDPNASSRTRYKTQEWVKRVQDLGAGEIVLNCMNQDGVRNGYDNEQLSKIRELCDIPLIASGGAGSMQDFVDVFKQSKVDGALAASVFHKNVINIGELKQFLTDNQVAARLCK
>NZ_CP012738.1|WP_096794604.1|817540_818275_-|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]-imidazole-4-carboxamide-isomerase
MIIPALDVLQNQIVRLYQGKYDTAQFYPFELGSRLKEYADSGAGKLHLVDLEGARDPSKKQWKHIQAATKALNVPYQVGGGIRSEQDVSDWLKAGANQVVIGSMAVEKREQVKVWIEQFGAEHFVIALDVNKTSTGWAPATHGWLSESEFGLLELVDFYVSLGVIDFLCTDISKDGTMTGPSFELYEDLTRHNSTIKVQASGGVSSLDDIKKLKELGVGGVILGKSLLDGAFSVEEALACYQNA
>NZ_CP012738.1|WP_002960265.1|818308_818899_-|imidazole-glycerol-phosphate-synthase-subunit-HisH
MIAIINTGCANINSVRFAFERLGQTPTVITSPEQLAGFERAILPGVGHASVAMKRLVDNGWQQAINEYQRPLMGICLGMQLLCESTEEGNVQCLGKIPGQVKALDVGNLTSPHMGWNNLSVNKEHALTKGLTLDEQVYFVHSFAHTVNDATLVSGEYGQTFSAIVAKDNYAGMQFHPERSAKVGARLLQNFVDWQL

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Crispr_ID: NZ_CP012738_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012738_3

812508-812616

Orphan

Consensus_repeat	Method
GCCCACCAATATAACGTCAGCCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012738_3

>merge|NZ_CP012738|3|812508-812616|CRISPRCasFinder
GCCCACCAATATAACGTCAGCCCTGTAGGCTGGAGTTTAACTCGCACAAATATAGTAAAACCGTAAAGCGCGGCATAAAGCCCCGCCCACCAATATAACGTCAGCCCTG

>NZ_CP012738|3|3|812508-812616|CRISPRCasFinder
GCCCACCAATATAACGTCAGCCCTG	TAGGCTGGAGTTTAACTCGCACAAATATAGTAAAACCGTAAAGCGCGGCATAAAGCCCC
GCCCACCAATATAACGTCAGCCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012738.1\|WP_033029706.1\|815306_815498_-\|DUF1289-domain-containing-protein	unknown	unknown	gnl\|CDD\|377738
NZ_CP012738.1\|WP_096794594.1\|802479_803253_-\|flap-endonuclease-Xni	unknown	unknown	gnl\|CDD\|181896
NZ_CP012738.1\|WP_007376298.1\|816779_817559_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_CP012738.1\|WP_096794593.1\|800326_802015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_096792602.1\|809362_810460_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NZ_CP012738.1\|WP_002960265.1\|818308_818899_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|183877
NZ_CP012738.1\|WP_096794602.1\|815500_816055_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_096794597.1\|810995_811772_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP012738.1\|WP_096794605.1\|819953_821063_-\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234972
NZ_CP012738.1\|WP_096794604.1\|817540_818275_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]-imidazole-4-carboxamide-isomerase	unknown	unknown	gnl\|CDD\|240083
NZ_CP012738.1\|WP_096794603.1\|816174_816789_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	unknown	unknown	gnl\|CDD\|235067
NZ_CP012738.1\|WP_007376313.1\|802032_802410_-\|DUF3192-domain-containing-protein	unknown	unknown	gnl\|CDD\|378660
NZ_CP012738.1\|WP_096794595.1\|804681_806217_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP012738.1\|WP_096794601.1\|814000_815272_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180392
NZ_CP012738.1\|WP_096794596.1\|806421_808209_+\|M61-family-metallopeptidase	unknown	unknown	gnl\|CDD\|226483
NZ_CP012738.1\|WP_157770574.1\|808537_808876_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371067
NZ_CP012738.1\|WP_008138596.1\|818895_819957_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|235471
NZ_CP012738.1\|WP_096794598.1\|811764_811971_-\|ParD-like-family-protein	unknown	unknown	gnl\|CDD\|314732
NZ_CP012738.1\|WP_096794600.1\|812827_813133_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012738.1\|WP_007376311.1\|803263_804607_-\|LOG-family-protein	unknown	unknown	gnl\|CDD\|378752

Protein	Function_ID	Function_description	E-value
NZ_CP012738.1\|WP_033029706.1\|815306_815498_-\|DUF1289-domain-containing-protein	gnl\|CDD\|377738	pfam06945, DUF1289, Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	9.08159e-10
NZ_CP012738.1\|WP_096794594.1\|802479_803253_-\|flap-endonuclease-Xni	gnl\|CDD\|181896	PRK09482, PRK09482, flap endonuclease-like protein; Provisional.	8.42099e-121
NZ_CP012738.1\|WP_007376298.1\|816779_817559_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	6.14843e-151
NZ_CP012738.1\|WP_096794601.1\|814000_815272_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180392	PRK06084, PRK06084, bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase.	0
NZ_CP012738.1\|WP_002960265.1\|818308_818899_-\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|183877	PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	1.17204e-88
NZ_CP012738.1\|WP_096794598.1\|811764_811971_-\|ParD-like-family-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	1.48549e-26
NZ_CP012738.1\|WP_096794597.1\|810995_811772_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	6.90083e-136
NZ_CP012738.1\|WP_096794604.1\|817540_818275_-\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]-imidazole-4-carboxamide-isomerase	gnl\|CDD\|240083	cd04732, HisA, HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.	7.99274e-102
NZ_CP012738.1\|WP_096794603.1\|816174_816789_-\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	gnl\|CDD\|235067	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE.	1.22107e-110
NZ_CP012738.1\|WP_007376313.1\|802032_802410_-\|DUF3192-domain-containing-protein	gnl\|CDD\|378660	pfam11399, DUF3192, Protein of unknown function (DUF3192). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.	3.72491e-51
NZ_CP012738.1\|WP_096794595.1\|804681_806217_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.96185e-54
NZ_CP012738.1\|WP_096794605.1\|819953_821063_-\|histidinol-phosphate-transaminase	gnl\|CDD\|234972	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional.	2.60695e-126
NZ_CP012738.1\|WP_096794596.1\|806421_808209_+\|M61-family-metallopeptidase	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	2.07824e-109
NZ_CP012738.1\|WP_157770574.1\|808537_808876_+\|hypothetical-protein	gnl\|CDD\|371067	pfam10459, Peptidase_S46, Peptidase S46. Dipeptidyl-peptidase 7 (DPP-7) is the best characterized member of this family. It is a serine peptidase that is located on the cell surface and is predicted to have two N-terminal transmembrane domains.	2.22118e-17
NZ_CP012738.1\|WP_008138596.1\|818895_819957_-\|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|235471	PRK05446, PRK05446, bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB.	0
NZ_CP012738.1\|WP_096792602.1\|809362_810460_+\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	8.50915e-24
NZ_CP012738.1\|WP_007376311.1\|803263_804607_-\|LOG-family-protein	gnl\|CDD\|378752	pfam11892, DUF3412, Domain of unknown function (DUF3412). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain is found associated with pfam03641.	1.46333e-83

>NZ_CP012738.1|WP_096794598.1|811764_811971_-|ParD-like-family-protein
MGIVKISDGLHEEIRKSSNIMSRSINSQAEFWIKIGMLAELNPTLTYQEIIKKQLIKEKLTIQELLHE
>NZ_CP012738.1|WP_096794597.1|810995_811772_-|type-I-methionyl-aminopeptidase
MSKVTIKTDAEIELMRESGKLLAQVFKMLDDFICEGITTLDIDTKVESYITNVLHARPASKGQYGYRYSLNSSVNDVVCHGVPNNIYKLKNKDILNIDITLEKNGYISDSSKMYTFAATSSEAKSLVKTTYDAMWEGIKVVKPKATLGDIGYAIQKHAESSGYSVVREYCGHGIGKEMHEEPQVLHYGKPHTGLVLEAGMTFTIEPMINQGSKKVKTKKDGWTVVTKDKKLSAQWEHTVLVTETGFEVLTLRDEEKSA
>NZ_CP012738.1|WP_096792602.1|809362_810460_+|ISAs1-family-transposase
MSLFSHLELVKDNRSHINQHHNLVDVLFLIITAVTSGCENWQDIEVYGESKLNWLRGFRSFKNGIPTRHSIARIFRTVDTDSLLLAMYSWVNQNRVKSAHPVIAFDGKTIRGASKHIADKLHLVSAFDCEAGLTLFHQTVGSKTNEIPAVRDLLKILDINNTVITLDALHCQKETLKQLISRHADYLVQAKGNQKKLYSAIQDAFTHQYESENSEILSHVTQDAGHGRKEVRTIDCLDARLLPSEIKESWPSVRTIVAVQRERTKGNRTSIDTHYYLTSLTDNILISKAIRQHWLIENQQHWILDVVFKEDACQINEPLSAQHMALFRRVVRNMIKQHTKSKGSIRSKCVRACYDDAFREELLFG
>NZ_CP012738.1|WP_157770574.1|808537_808876_+|hypothetical-protein
MSTLAATFALSLSSNAIADEGMWQPHQLPELESILKAKGLEIDVESISKLTEFPMNAVISLGGCTATLITYLKYKMGLIKQAKARYLIACMSSQDLIMPLFALHYLSNHLAS
>NZ_CP012738.1|WP_096794596.1|806421_808209_+|M61-family-metallopeptidase
MKKLLALSIVAACSTSAFADVNYELKISEPQHHLGNVSVEFPKSAQSHIDVKLPAWRTGRYEILNLANGVRYFNAKDEDGKELTWEKIDHSTWRVHLNKPTEVNVDYQVYANELGKRARHIDDSHAFIDASGFFMFSESFRQEPVTVNLDIPKKWRSVSGMDNLEGKNSFKAANYDVLVDSPIETGINQLHTFEVDDREYDLVVWGDGNYDVDLMLTDLKKLVATGNVIWDGYPYERYVFMVHATSGAGGATEHLNSTIIQRPRDRFGSREDYLGFISTAAHEFIHTWNVKAYRPQGLVPYDYTNMNYSKLLWIAEGSTSYFEDHLLVRSGIQTTDEFFKVMSKTINRHLQTPGREVQSASETSFDKWINQGGDHARNYSTNIYSEGSLLSLALDIDLLEKSQGKISYRDVHKALYNNHKMPAGFTDVDVLNILKDLTGRDYSSWWQKNVESPASINFDELLAKVGLKYERPEKAKALASIDATAKNTGELLTLSYVRRGGSAWEAGLTTDDKIVAINKHHVGKDLKTSLETFKAGEKVTVDYIRRDALDSLTLVLSEDFDKPKKVVANKDATLEQKALFKAWIGVEHPAEVKKD
>NZ_CP012738.1|WP_096794595.1|804681_806217_-|GGDEF-domain-containing-protein
MSDKSNATDKKLKQAIDARMAVEDARKYQVDTLSDFSAKLSLSCKGLDTELDNRLAKFRAALIKGVSFEDLSPLISETIVLLKNQESVQLSQQRDLYSSVQNAGKQLQKTKGLPEDTRRTLRHLLDHEINQVHSTHDFIPLLDQLISFYHQTLSLKLEPASDDECTATPELAQELLKLANELVLEDEATEEIKYIKNCITESDTLDALLKASINIISVIVKNINKERKSAQSFLSSLNQTLEDLHHSIVSTSKHSKSMGVEFDILNKNIESKIKNLNVQTQNATSISSLKELVDNELKSLSKDFIAKEKLERTDREMLVSSFDEINGRIGSLESKLTKYKKRLNEQRFKSLLDSLTKLPNRAAFDERYNHEIHLFNVQSSDVTLAVIDVDHFKSINDRFGHTAGDITLQVIAKALQKSVRKSDFIARYGGEEFVLLMPSTSLINATAPLDKLRKIIKSIPFKFKDKQIEITISLGVTQLKKGDTPIIAFDRADDALYEAKNTGRDRLCISK
>NZ_CP012738.1|WP_007376311.1|803263_804607_-|LOG-family-protein
MLIQLNPTGVLDLLSQLEVDLLEQSSTSERYKLFRNCALAVLNVGSHTDASNEIYDKYQDFDIRLLSRERGIKIELENPPLTAFVDGEIITGIHEHIFSVIRDILFICQKYEKNLKEQKAITHMVFDMLRNADALRVNSEPSMVVCWGGHSINEVEYKYTKQVGYELGLRGLNICTGCGPGAMKGPMKGATIGHAKQRIKDNRYLGLTEPSIIAAEPPNPIVNELVILPDIEKRLEAFIRTAHAIIIFPGGAGTAEELLYLLGILLHPDNAKQCMPVILTGPKESEAYFKELCEFVEMTLGKEALNKFEVIIDDPKLVGQTLKSAMTDVRNYRKSEGDAYYFNWTLKIDNDFQQPFAPTHENMAGLDLHLNQPKQLLAANLRRAFSGIVAGNVKDEGIKAIKQNGRYILSGEPALMKDMDKLLQAFVDQGRMKLPGSKYTPCYEIKA
>NZ_CP012738.1|WP_096794594.1|802479_803253_-|flap-endonuclease-Xni
MKPHLLLIDALNLIRRIYAVDVNQKHHSDDQMIEACCARVAHACKKLLNTTNATHAIAVFDGDRSWRYHFYKNYKHSRSPMPQILKDALIHFKTAIEETGIVVFEPINDEADDIITTLACKAATNNVSNTIVSTDKGFLPHLGQYITIYDYFKKQYLDEHSIKERFGVQQSRLVDFWALAGDKTNDIPGVKGIGIKSAQQLINNYNTVEQALEDKLLSPSIHKKLEANMDMYVISKQLVSLRTDINLGFSLKQLRLS
>NZ_CP012738.1|WP_007376313.1|802032_802410_-|DUF3192-domain-containing-protein
MLKKFFRYLILGLGLYALIATLVITFYKDDPQAMIWQDREAFNKRYIEKLSLEQPTTINSVLDYLGSPDLTFAKRNSDEVLQIIFYRTQHKTSDGITTIDECTGLLFKNGQLILWGPSAYKKYQD
>NZ_CP012738.1|WP_096794593.1|800326_802015_-|hypothetical-protein
MNEPISVKLNQLLENTKLFLTLYNVKKQWQTVYPAVCKLSEQYRELYEQYPVALQARCAVFNPKYSYSVNLVINQCVLTAALCKSQQYNNQLSELYICAALVDHLCVGEQLNKLSKQLKFSDSDKRIWQLRHQLTAKIILTGGDSAKPITQVLAKLTKYKQALVTTPKIMLYDGGITLVAIANIIAMNITYSPPKQHISLFKALGDLYIRTPNLFAQQLIKFLIAHIGPLLPGSRVIYNDQLMVYLASDNQQRHILINVENKNKIAWYRVKALLNSNAIQWQSNDSRIQISVWDSEHITSTANILNNGSLALIELISRLKLQHEYSYKALSQIMAPYPNVIENLCEAVKPYNNEHQAAKSLKHSLSMVGYFNAPAIIQRVIFEQLVKVTPHPLQQFVLTRLECIVEIIALLVSKNKMIQFEHIALPLYGYAYFLLTQCSTHISRKIMIDETPNTTLNTPISAFFGVSSLETEQLKAQLTLLLSDNPWAIALLEAEHLPKKQLNERSKLWVAIKALTQTVFKPQLKLSTWQQQILDQQLTTQKWENHHLFNEQLQELALSNTI
>NZ_CP012738.1|WP_096794600.1|812827_813133_-|hypothetical-protein
MKRSEFLTDGVTSQFRSLDDQHRLLAEAYRNYFDELYILDEELLKKVNLFLIFNQPLSNLHIEVNFKTQPTKQLDAWIARLKTQCEHRTSIYKHLLEIAAS
>NZ_CP012738.1|WP_096794601.1|814000_815272_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKLESLALHHGYESEATTKSAAVPIYHTSSYTFDNTQHGADLFDLKVPGNIYTRIMNPTNAVLEQRIAAMEGGIGGLAVASGMAAITYAIQCLCEVGTNIVSISQVYGGTYNLFSHTLPRQGIEARMIKADDFTAFENAIDDNTRAVFCESIGNPAGNIVDIERLARIAHSKGVPLIVDNTVATPYLCRPFELGADIVVHSLTKYINGHGTAIGGMIVDSGKFDWKANATRFTMMNEPDPSYHNVVYTEAFAEAAFIGRCRVVPLRNTGAALAPKNASDILIGLETLGLRMDRHCENAQHLAEYLENHPKVLWVNYAGLKSSPYNEMSQKITSGKASGILSFGITGGLEAGTRFIDALNMILRLVNIGDAKSLACHPASTTHRQLNDEELANAGVSRDLIRLSVGIENIADIIADVSQALDKA
>NZ_CP012738.1|WP_033029706.1|815306_815498_-|DUF1289-domain-containing-protein
MRQLNQNKKPSKFKTDCLGICERRSGYCTGCGRTNEEIFDWIILSEDEKKAILETPRVDIRKT
>NZ_CP012738.1|WP_096794602.1|815500_816055_-|hypothetical-protein
MKNYITPSFVAFILVTAFILAGCTSKTDQTTTTTTTTTTNQSVKTTVTPGECSTINNLLNGYESGFNSIKTDKVNNQFTNQWRTNTHMIGANCTVTLNKSGQASYQCQTPVKTQTQTIKSHQKLAKQLRQCLTKAGWFESQKETASSIYSTFVLDTKTPVITLATNQEGNGFSSRFEIAPPLGL
>NZ_CP012738.1|WP_096794603.1|816174_816789_-|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE
MQVTQQNQAQVDFAKSDMIPAIIQDARSGVILMQGFMNSEALAVTLDTNKVTFYSRSKSRLWTKGESSENYLNVVSVHTDCDYDSILVLANPEGPTCHLGTQSCFGDEAKPSLSFLAQLEDVIVARKNDDPSKSYTASLFAKDLSRSCQKVGEEGVEVALAAMKHDNDELTNESADLIYHLTVLLQRQGLALEDVVKCLQGRHK
>NZ_CP012738.1|WP_007376298.1|816779_817559_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
MLSKRIIPCLDVKDGQVVKGVKFKGHEVVGDILTMAKAYSEAGADELVFYEISASVEKRLLDVNWVESIARNIDIPFCVAGGIKSVADAARVLERGADKISINSPAIARPELIKELHDEFGKQCVVVGIDSFFDEITGEYLVYQLTGDPNASSRTRYKTQEWVKRVQDLGAGEIVLNCMNQDGVRNGYDNEQLSKIRELCDIPLIASGGAGSMQDFVDVFKQSKVDGALAASVFHKNVINIGELKQFLTDNQVAARLCK
>NZ_CP012738.1|WP_096794604.1|817540_818275_-|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]-imidazole-4-carboxamide-isomerase
MIIPALDVLQNQIVRLYQGKYDTAQFYPFELGSRLKEYADSGAGKLHLVDLEGARDPSKKQWKHIQAATKALNVPYQVGGGIRSEQDVSDWLKAGANQVVIGSMAVEKREQVKVWIEQFGAEHFVIALDVNKTSTGWAPATHGWLSESEFGLLELVDFYVSLGVIDFLCTDISKDGTMTGPSFELYEDLTRHNSTIKVQASGGVSSLDDIKKLKELGVGGVILGKSLLDGAFSVEEALACYQNA
>NZ_CP012738.1|WP_002960265.1|818308_818899_-|imidazole-glycerol-phosphate-synthase-subunit-HisH
MIAIINTGCANINSVRFAFERLGQTPTVITSPEQLAGFERAILPGVGHASVAMKRLVDNGWQQAINEYQRPLMGICLGMQLLCESTEEGNVQCLGKIPGQVKALDVGNLTSPHMGWNNLSVNKEHALTKGLTLDEQVYFVHSFAHTVNDATLVSGEYGQTFSAIVAKDNYAGMQFHPERSAKVGARLLQNFVDWQL
>NZ_CP012738.1|WP_008138596.1|818895_819957_-|bifunctional-histidinol-phosphatase/imidazoleglycerol-phosphate-dehydratase-HisB
MSNPYLFIDRDGTIIEEPITDKQVDSLEKLAFLPGVIPALLQLQAAGYRLVMVSNQDGLGTDSFPTADFDIAQDKMMDIMQSQGISFDEVLICPHFDEQNCDCRKPKTGLLTELMRSGKVDLARSFVIGDRQTDIGLAQNLCCEGILYDGDWSAIVTKLTTANREGRVTRNTKETQIDVAINLDQTKNGSIDTGLGFFDHMLDQIRTHANIGLNIKAKGDLHIDEHHLVEDIGIALGVALKQALGTKSQIARYGFALPMDECKAEAQIDLSGRASFVLNANFSREKAGDLDVQMVEHFFKSLSDNAAISLILSVSDGNCHHQVEGLFKAFSRALRMAVAQDTTQQTASSKGCL
>NZ_CP012738.1|WP_096794605.1|819953_821063_-|histidinol-phosphate-transaminase
MSNESAQASSLLPKNIAALAAYSSAKSEKLTGTTWLNANESPYAKNLELSIEDLNRYPDPQPQLVIDRYAAYTELESENVLMTRGADEGIELLVRTYCEPAKDSIALFLPTYGMYKVTADTHNVSINALTQELLLSGSVDEIVEAVGNSKLVFICNPNNPTGSLTPLDKVKAIATALMGKALVIVDEAYIEFCPEQSATKLINEFSNVVVLRTLSKAFALAGLRTGFTLAQAATLAPIRKVIAPYPVSGVVASIAAQAIAPDVITSMRRQVTILNSLKAKLVDWLNASPAALKILTGEGNFVTLKLADKNYFKIALEQGLVMRAFTLYGEDDWLRISIGSEQELEQVKIWLDGLQTPATAASLAGNEVS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012738_1	1.1\|129370\|56\|NZ_CP012738\|CRISPRCasFinder	129370-129425	56	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	816445-816500	2	0.964

1. spacer 1.1|129370|56|NZ_CP012738|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 2, identity: 0.964

gtgtattgtagacgctcagcttgctggcgttaaaagcgaagcttttaaatttcgac	CRISPR spacer
gtgtattgtagacgctcagcttgctggcgttaaaagcgaagcttttaaacttcgat	Protospacer
*************************************************.*****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

243859 : 284067

uncultured_Caudovirales_phage(28.57%)

plate,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096794275.1\|243859_245404_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.4e-11	27.7
WP_157770568.1\|245430_245961_+	hypothetical protein	NA	NA	NA	NA
WP_096794277.1\|246386_246767_+	glyoxalase	NA	NA	NA	NA
WP_096792381.1\|247167_248346_-\|transposase	IS4 family transposase	S5FM71	Shigella_phage	5.1e-70	38.9
WP_096794278.1\|248574_248913_+	carbon starvation protein CstA	NA	NA	NA	NA
WP_096794279.1\|249040_249721_-	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.3e-05	28.4
WP_096794280.1\|249997_250852_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_033039790.1\|250933_252280_-	N-succinylarginine dihydrolase	NA	NA	NA	NA
WP_096794281.1\|252917_254024_-	hypothetical protein	NA	NA	NA	NA
WP_096794282.1\|254131_255100_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.7e-40	34.8
WP_008137797.1\|255167_255602_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_096794283.1\|255725_256154_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_096794284.1\|256318_256675_+	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	3.6e-27	54.5
WP_096794285.1\|256707_257718_+	ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_096794286.1\|257742_258960_+	organoarsenical effux MFS transporter ArsJ	NA	NA	NA	NA
WP_096794287.1\|259065_261186_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.2e-18	32.6
WP_007377108.1\|261252_261840_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_007377107.1\|261951_262494_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_033028445.1\|262556_263090_-	hypothetical protein	NA	NA	NA	NA
WP_096794288.1\|263141_263513_+	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_007377104.1\|263603_263951_-	hypothetical protein	NA	NA	NA	NA
WP_008137777.1\|264159_266133_-	serine/threonine protein kinase	A0A2H4UVE2	Bodo_saltans_virus	1.8e-19	30.3
WP_096794289.1\|266656_267928_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_007377101.1\|267943_268408_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_008137773.1\|268424_269753_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_096794290.1\|269772_271053_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_096794291.1\|271063_274573_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_007377097.1\|274554_275283_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_007377096.1\|275275_276073_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_096794292.1\|276276_277392_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_007377094.1\|277408_277912_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_007377093.1\|277908_279399_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_096794293.1\|279435_280962_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_007377091.1\|280964_281741_+	hypothetical protein	NA	NA	NA	NA
WP_096794294.1\|281758_282244_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_096794295.1\|282240_284067_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

485412 : 540742

Staphylococcus_prophage(20.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096794419.1\|485412_486378_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.3e-43	34.7
WP_096794420.1\|486840_487257_+	GFA family protein	NA	NA	NA	NA
WP_096794422.1\|488294_489329_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	1.7e-08	29.0
WP_096793603.1\|491204_492308_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_096794423.1\|493217_493706_+	N-acetyltransferase	NA	NA	NA	NA
WP_096794424.1\|493793_495374_-	sulfotransferase family protein	NA	NA	NA	NA
WP_096794425.1\|495462_497880_-	TonB-dependent receptor	NA	NA	NA	NA
WP_096794426.1\|498358_499453_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_096794427.1\|499526_500723_+	MFS transporter	NA	NA	NA	NA
WP_096794428.1\|500804_501668_-	DMT family transporter	NA	NA	NA	NA
WP_007375632.1\|501952_502693_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_096794429.1\|503135_504131_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_033030711.1\|504159_505167_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_096794430.1\|505268_506876_+\|holin	glucose-methanol-choline oxidoreductase	A0A1V0S9J5	Catovirus	4.8e-63	32.4
WP_096794431.1\|506861_507692_-	DUF2431 domain-containing protein	NA	NA	NA	NA
WP_008134428.1\|507695_508097_-	hypothetical protein	NA	NA	NA	NA
WP_033030720.1\|508164_508584_-	DUF3429 domain-containing protein	NA	NA	NA	NA
WP_007375625.1\|508841_509411_+	peroxiredoxin	NA	NA	NA	NA
WP_096794432.1\|509566_511147_+	alkyl hydroperoxide reductase subunit F	G3MA85	Bacillus_virus	4.3e-40	30.9
WP_096794433.1\|511256_511496_-	hypothetical protein	NA	NA	NA	NA
WP_096794434.1\|511528_513553_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	5.2e-46	33.5
WP_007375621.1\|513733_513955_-	hypothetical protein	NA	NA	NA	NA
WP_007375620.1\|514597_514885_+	hypothetical protein	NA	NA	NA	NA
WP_096794435.1\|514857_516477_+	peptidase	NA	NA	NA	NA
WP_008134420.1\|516473_516719_+	hypothetical protein	NA	NA	NA	NA
WP_096794436.1\|516728_517565_-	patatin family protein	NA	NA	NA	NA
WP_096794437.1\|517719_518592_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_008134418.1\|518626_519082_-	hypothetical protein	NA	NA	NA	NA
WP_007375614.1\|519103_520057_-	paraslipin	L7RCW8	Acanthamoeba_polyphaga_moumouvirus	3.0e-20	29.8
WP_096794438.1\|520504_521401_+	cation transporter	NA	NA	NA	NA
WP_096794439.1\|521449_525961_-	EAL domain-containing protein	NA	NA	NA	NA
WP_096794440.1\|526113_526668_+	isochorismatase family protein	NA	NA	NA	NA
WP_007375610.1\|526804_528271_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.9e-12	60.9
WP_007375609.1\|528254_528782_+	hypothetical protein	NA	NA	NA	NA
WP_096794441.1\|528869_531023_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_096794442.1\|531144_531702_-	TMEM165/GDT1 family protein	NA	NA	NA	NA
WP_007375606.1\|532105_533233_-	alcohol dehydrogenase	NA	NA	NA	NA
WP_096794443.1\|533319_533997_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_096794444.1\|534187_535099_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.1e-06	25.2
WP_096792504.1\|535466_536432_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.1e-43	35.0
WP_008134410.1\|536827_537166_-	hypothetical protein	NA	NA	NA	NA
WP_096794445.1\|537772_538429_+	hypothetical protein	NA	NA	NA	NA
WP_096794446.1\|538558_539224_+	hypothetical protein	NA	NA	NA	NA
WP_096794447.1\|539707_540742_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	3.4e-09	30.9

DBSCAN-SWA_3

723159 : 798863

Shigella_phage(12.5%)

transposase,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050484169.1\|723159_724338_-\|transposase	IS4 family transposase	S5FM71	Shigella_phage	1.3e-70	39.2
WP_096794552.1\|726756_727458_-	hypothetical protein	NA	NA	NA	NA
WP_033038804.1\|727467_728685_-\|holin	choline transporter	NA	NA	NA	NA
WP_096794553.1\|728843_730511_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.0e-47	27.3
WP_096794554.1\|730522_731986_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_007376366.1\|731987_732563_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_096794555.1\|732972_733278_-	hypothetical protein	NA	NA	NA	NA
WP_008169639.1\|733277_733535_-	DUF3081 domain-containing protein	NA	NA	NA	NA
WP_096794556.1\|733681_734962_+	DUF1704 domain-containing protein	NA	NA	NA	NA
WP_096794557.1\|735084_738063_+	TonB-dependent receptor	NA	NA	NA	NA
WP_096794558.1\|738169_738643_+	hypothetical protein	NA	NA	NA	NA
WP_096794663.1\|739138_739966_-	hypothetical protein	NA	NA	NA	NA
WP_096794559.1\|740060_740864_-	DUF1338 domain-containing protein	NA	NA	NA	NA
WP_096794560.1\|740899_742366_-	succinylglutamate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_096794561.1\|742373_743408_-	arginine N-succinyltransferase	NA	NA	NA	NA
WP_096794562.1\|743458_744664_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_007376357.1\|744861_745290_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_096794563.1\|746344_747514_+	cellulose-binding family II protein	NA	NA	NA	NA
WP_096794564.1\|747573_748506_-	hypothetical protein	NA	NA	NA	NA
WP_007376355.1\|748897_749200_+	1,4-alpha-glucan-branching protein	NA	NA	NA	NA
WP_096794565.1\|751199_753428_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_096794566.1\|753420_755484_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_096794567.1\|755476_758014_+	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	4.4e-18	44.8
WP_008137132.1\|758028_759330_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_096794568.1\|759416_760952_+	glycogen synthase	NA	NA	NA	NA
WP_007376348.1\|761042_762257_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_096794664.1\|762287_763358_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_096794665.1\|763444_764482_+	23S rRNA pseudouridine(2604) synthase RluF	NA	NA	NA	NA
WP_096794569.1\|764945_765278_+	zinc chelation protein SecC	NA	NA	NA	NA
WP_096794570.1\|765386_768455_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.2e-56	22.4
WP_096794571.1\|768457_769540_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_096794572.1\|769662_770559_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_096794573.1\|770548_770860_+	MGMT family protein	NA	NA	NA	NA
WP_096794574.1\|770917_771496_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_096794666.1\|771691_772303_-	hypothetical protein	NA	NA	NA	NA
WP_157770536.1\|772354_773614_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_096794575.1\|773662_773944_-	hypothetical protein	NA	NA	NA	NA
WP_096794576.1\|774247_774877_-	hemolysin III family protein	NA	NA	NA	NA
WP_096794577.1\|775096_777448_+	TonB-dependent receptor	NA	NA	NA	NA
WP_096794578.1\|777541_777895_+	hypothetical protein	NA	NA	NA	NA
WP_096794579.1\|778218_779697_+	cellulase family glycosylhydrolase	NA	NA	NA	NA
WP_096794580.1\|779761_781453_-	alkaline phosphatase D family protein	NA	NA	NA	NA
WP_007376333.1\|781755_782028_+	hypothetical protein	NA	NA	NA	NA
WP_008137099.1\|782263_782842_+\|protease	ATP-dependent protease	NA	NA	NA	NA
WP_002962457.1\|782910_783534_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_007376330.1\|783526_784207_+	hypothetical protein	NA	NA	NA	NA
WP_096794581.1\|784215_785169_+	DUF1722 domain-containing protein	NA	NA	NA	NA
WP_096794582.1\|785168_786563_+	deoxyribodipyrimidine photo-lyase	A0A1V0SGL1	Hokovirus	3.1e-58	32.0
WP_096794583.1\|786564_786993_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_096794584.1\|786995_787706_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_096794585.1\|787702_788959_+	NAD(P)-binding protein	NA	NA	NA	NA
WP_096794586.1\|788951_789689_+	DUF1365 domain-containing protein	NA	NA	NA	NA
WP_096794587.1\|789728_790991_+	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	7.2e-46	32.6
WP_096794588.1\|790968_791469_+	DUF2878 domain-containing protein	NA	NA	NA	NA
WP_096794589.1\|791523_792012_+	hypothetical protein	NA	NA	NA	NA
WP_096794590.1\|792013_792553_+	DUF3833 domain-containing protein	NA	NA	NA	NA
WP_002962474.1\|792759_793035_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	6.6e-21	58.4
WP_007376319.1\|793127_793625_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_096794591.1\|793624_795349_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.8e-54	28.9
WP_096794592.1\|795842_798863_+\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP012737

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP012737_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012737_1

599025-599120

Orphan

Consensus_repeat	Method
ATACCAATCCGCAATAATACTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012737_1

>merge|NZ_CP012737|1|599025-599120|CRISPRCasFinder
ATACCAATCCGCAATAATACTTAACCTGAACTTTGCTTGAGATAGATTTATTATCCAAAGTTCAGGTTACTTATACCAATCCGCAATAATACTTAA

>NZ_CP012737|1|1|599025-599120|CRISPRCasFinder
ATACCAATCCGCAATAATACTTAA	CCTGAACTTTGCTTGAGATAGATTTATTATCCAAAGTTCAGGTTACTT
ATACCAATCCGCAATAATACTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012737.1\|WP_096792463.1\|604953_605610_+\|methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|259883
NZ_CP012737.1\|WP_096792466.1\|609221_610286_+\|CDP-glycerol--poly(glycerophosphate)-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|367953
NZ_CP012737.1\|WP_096792464.1\|605602_607918_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP012737.1\|WP_096792456.1\|595269_596676_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NZ_CP012737.1\|WP_008138164.1\|594096_594549_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP012737.1\|WP_096792458.1\|599355_600420_-\|CDP-glycerol:glycerophosphate-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|224799
NZ_CP012737.1\|WP_096792450.1\|585044_586211_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185017
NZ_CP012737.1\|WP_033031288.1\|592941_593415_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
NZ_CP012737.1\|WP_096792459.1\|600825_601326_-\|DUF3299-domain-containing-protein	unknown	unknown	gnl\|CDD\|378700
NZ_CP012737.1\|WP_096792451.1\|586500_587391_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NZ_CP012737.1\|WP_096792460.1\|601340_602654_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP012737.1\|WP_096792461.1\|602650_603337_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP012737.1\|WP_096792457.1\|596938_598357_+\|phosphomannomutase	unknown	unknown	gnl\|CDD\|100090
NZ_CP012737.1\|WP_007376768.1\|598541_598955_+\|adenylyltransferase/cytidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|173922
NZ_CP012737.1\|WP_096792462.1\|603727_604831_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|184420
NZ_CP012737.1\|WP_033031584.1\|608737_609157_+\|group-1-truncated-hemoglobin	unknown	unknown	gnl\|CDD\|381253
NZ_CP012737.1\|WP_096792452.1\|588103_588556_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP012737.1\|WP_096792453.1\|589193_590636_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379441
NZ_CP012737.1\|WP_096792454.1\|590933_592865_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP012737.1\|WP_096792465.1\|607904_608738_+\|DUF3034-family-protein	unknown	unknown	gnl\|CDD\|378607

Protein	Function_ID	Function_description	E-value
NZ_CP012737.1\|WP_096792463.1\|604953_605610_+\|methylamine-utilization-protein	gnl\|CDD\|259883	cd04221, MauL, Methylamine utilization protein MauL. MauL is one of the products from the methylamine utilization gene cluster in Methylobacterium extorquens AM1. Mutants generated by insertions in mauL were not able to grow on methylamine or any other primary amine as carbon sources. MauL belongs to the blue or type I copper protein family. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form.	2.01667e-31
NZ_CP012737.1\|WP_096792466.1\|609221_610286_+\|CDP-glycerol--poly(glycerophosphate)-glycerophosphotransferase	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	8.953e-10
NZ_CP012737.1\|WP_096792464.1\|605602_607918_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	6.82506e-85
NZ_CP012737.1\|WP_096792456.1\|595269_596676_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP012737.1\|WP_008138164.1\|594096_594549_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.48337e-12
NZ_CP012737.1\|WP_096792458.1\|599355_600420_-\|CDP-glycerol:glycerophosphate-glycerophosphotransferase	gnl\|CDD\|224799	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane].	1.41424e-17
NZ_CP012737.1\|WP_096792450.1\|585044_586211_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185017	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.	0
NZ_CP012737.1\|WP_033031288.1\|592941_593415_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	1.63576e-72
NZ_CP012737.1\|WP_096792459.1\|600825_601326_-\|DUF3299-domain-containing-protein	gnl\|CDD\|378700	pfam11736, DUF3299, Protein of unknown function (DUF3299). This is a family of bacterial proteins of unknown function.	2.19934e-56
NZ_CP012737.1\|WP_096792451.1\|586500_587391_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	3.21684e-163
NZ_CP012737.1\|WP_096792460.1\|601340_602654_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	9.98697e-13
NZ_CP012737.1\|WP_096792461.1\|602650_603337_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.54008e-84
NZ_CP012737.1\|WP_096792457.1\|596938_598357_+\|phosphomannomutase	gnl\|CDD\|100090	cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP012737.1\|WP_007376768.1\|598541_598955_+\|adenylyltransferase/cytidyltransferase-family-protein	gnl\|CDD\|173922	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.	3.40273e-34
NZ_CP012737.1\|WP_096792462.1\|603727_604831_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|184420	PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_CP012737.1\|WP_033031584.1\|608737_609157_+\|group-1-truncated-hemoglobin	gnl\|CDD\|381253	cd00454, TrHb1_N, truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 1 (N). The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. They are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). Typical of the TrHb1s (N) group is a protein matrix tunnel. It includes a Mycobacterium tuberculosis TrHb1, Mt-trHbN, which is encoded by the glbN gene. Mt-trHbN is expressed during the Mycobacterium stationary phase, and plays a specific defense role against nitrosative stress. The cyanobacterium Synechococcus sp. PCC 7002 TrHb1 GlbN, is constitutively expressed, and likely also protects cells from reactive nitrogen species.	3.06099e-37
NZ_CP012737.1\|WP_096792452.1\|588103_588556_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.13118e-12
NZ_CP012737.1\|WP_096792453.1\|589193_590636_-\|hypothetical-protein	gnl\|CDD\|379441	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.	4.74532e-33
NZ_CP012737.1\|WP_096792454.1\|590933_592865_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	5.21535e-33
NZ_CP012737.1\|WP_096792465.1\|607904_608738_+\|DUF3034-family-protein	gnl\|CDD\|378607	pfam11231, DUF3034, Protein of unknown function (DUF3034). This family of proteins with unknown function appears to be restricted to Proteobacteria.	1.70153e-132

>NZ_CP012737.1|WP_007376768.1|598541_598955_+|adenylyltransferase/cytidyltransferase-family-protein
MKKIGYTTGVFDLFHIGHLNVLKRAKLECDYLIVGVTSDELSISVKNKKPVIPFQERLEIVEAIKFVDEVVPQVNYDKLEAWNNLKFDKMFVGDDWKGTDKWNAIEEDFAKRGVEIMYFPYTTHTSSTILREVLSKI
>NZ_CP012737.1|WP_096792457.1|596938_598357_+|phosphomannomutase
MDNTLICSEVIAKSGVVFGTSGARGLVTDFTADVCAAFSIGFVKSIKTEFSFNTVALAIDNRPSSYFMAQACAQSLKQLNINVIYYGVIPTPALAYKAMQDSIPSIMVTGSHIPFDRNGLKFYRPDGEITKADEQAILNNIMPFSAVTQVSELDLNTAASEAYIKRYTKLFSADALIGKKVGIYEHSSAGRDLYKSLFEQLGAKVISLGRSENFIPIDTEAVSEEDKKQAIIWSKKYGVDAIFSTDGDGDRPLVADENGGWLRGDLLGLLCSQLLGIEALAVPVSCNTAIEKSNSFKHIIRTKIGSPFVIAEFSQLNENFTRVAGFEANGGFLLGSNIDINAKQLTALPTRDAVLPALMLLIQKQPISMQLKLLPGRFTASDRVQNFAKAKSLELIATLKCSADAFLTELGCGLNYSVNTVDGLRIVLQNDDVVHLRASGNAPELRCYTESDTVFNAEKLADKVIQYLNKLK
>NZ_CP012737.1|WP_096792456.1|595269_596676_+|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MILPVIMAGGSGTRLWPLSRGNYPKQFLPLSGEQTMLQNTISRLNGLVHSPAMLICNEEHRFIAAEQVRQLGVQHSGLFLEPIGRNTAPAIALAAFKAVEKGENPLLLILAADHVIDDTIAFQHSINQAVELAKQDKLVTFGIVGNKPETGYGYIKRGEQFNNGFVVDSFVEKPSLEMAKKYIDSGDYYWNSGMFLFKASRYLEELNTFRPDIYEACEKAMQVQNDDMDFVRIDKAAFEKCASESIDYAVMEHTKDAVVVPMDAGWSDVGGFSALWDVSTKDKNGNVFTGDVKAINTKNTLVFGEDKLVATIGIEDLVIINTKDAVLVAHKDQSQHVKAIVQQLKAENRSEAVTHREVYRPWGKYDSVDSGERFQVKRITVKPGAKLSVQMHHHRSEHWIIVSGAAKVRIDGAEQLVTENESVYIPITAVHALENPGKVDLELIEVQSGSYLGEDDIVRFEDCYGRVK
>NZ_CP012737.1|WP_008138164.1|594096_594549_-|transposase
MHRSDLLRKGRVSLINRFYSITLVAHKREDKFISIDINRLIIKEMKNIEDQKAAKTIAFVIMPNHVHWLIQLGNEKSLSDVIKSFKGRCSKTIRDRLGVQKLWQRNYYDHMIRNEDDLLNNARYIIANPLRAKIVDKVASYPYWDCIYIK
>NZ_CP012737.1|WP_033031288.1|592941_593415_+|peroxiredoxin
MIEQGQTLPAVTLTQLTNDGMQTLTNSELFEGKKVVLFAVPGAFTPTCSNAHLPEFITLADKIKAKGIDAIYCVSVNDAFVMKAWGDSQNAQEIAMLADGDASFTKALGLDKDTAGFGGIRSSRYAMIVDNSVVTGLFVEQDKEFAVSRAEYVLENL
>NZ_CP012737.1|WP_096792454.1|590933_592865_+|methyl-accepting-chemotaxis-protein
MRVSSITRLLAILLALASILLGSTLFWASQTLLKLEQQNTAYSQLKNTILVDLAGYLGRYLDQGDSQYLNQASTLINNVKVNQLSILPSELSTTLEQQLTTLNNDINGKYRALGKLSGNETALLDNALRQMAGSASTLISYAKKAPEQNNHALMYYSLASDYYTEVINLSLFTYQLIVQYDKNTEQSLQQSIVNLNKLGQAIEQLPNLGVMSAVDEDALFIDEEAEDLGDEIKSELVSWPNRYPRDLASTLKQTQLRENGSNALRSQISALSNTVINAEQALKAEQDNLKQQVLWVFCVAIGTLVILAASVYFVQRNQVLNPLRQLRDGFAFLIESNELKSIESKNSKTEIGEIAQFFNQLIDRQRTEAQERAQMLKVVNSFMQQMSENLYTISQQASLSHGQVEQNQNLLSDIQRIGEQVNDINAQVADNAQSTFTAMEQSLGFSANMLDASSDTQVRVEQGMQSIQELLTGVDGVGKIIEVIRNIADQTNLLALNAAIESARAGEHGRGFAVVADEVRQLARQTQGSLSDINDQLSLLTENSRVVSTQISALANGAQSQTQNAQELKLNSEGVASNAQSANSVAFEAMELAKQQSSLLDNFSKSMQSMKGQVSESSLLVDDIRNQLQQQMQTIKGSLGLKK
>NZ_CP012737.1|WP_096792453.1|589193_590636_-|hypothetical-protein
MLKKISLLVGLAISANAMAKGGVSPYLPLNQAPELEHQIQRLLAVSKNTHIMSKPYKAHDIYKVLQTVRHSYPELYQTLSYQISPYVQSDAGTFAKVTLAAGTKDKTLPNQRGQTTKTNLIVEGGAYANFGRYFGVSVAGIANEDEILPTQSFVYLGYKYAQLDIGYREHWYSPFNDSAMLLSTQAKTTPSITLSNVEPITSFNIRYDMFISKMTEQSGILESTKQKGATRQYKPGKPYLFGLHTSFAATDNLTIGLSRLMQFGGGPRSVTLKDFAEGFFTPGSKDNITRSDAEEVDANFELGDQLGSITFAYNNSIYELPYELYGEVALEDTLGGSRNNAYSFGIYLPFIANNHSLRFEHSNWQKSWYANSIYLDGNRNSGNVIGHWAGDEHDYNDYTPAKSMSANWHWQLSKIESLNTTIRMLENKRSGYKTSYELQTAYTRKLSKPIMGAKSWGAELYQGKDVYGETFARLGLFANF
>NZ_CP012737.1|WP_096792452.1|588103_588556_-|transposase
MHRSDLLRKGRVSLINRFYSITLVAHKRENKFISIDINRLITKEMKNIEDQKAAKTIAFVIMPNHVHWLIQLGNEKSLSDVIKSFKGRCSKTIRDRLGVQKLWQRNYYDHMIRNEDDLLNNARYIIANPLRAKIVDKVASYPYWDCIYIK
>NZ_CP012737.1|WP_096792451.1|586500_587391_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKAVIPVAGLGTRMLPMTKAIPKEMLPIVDKPLIQYIVSECVAAGIKDIVLVTHSSKNAIENHFDTSYELEATLEKRVKRALLDEIRSICPTDVTVMSVRQGEAKGLGHAILCAKPIVGNNDFVVLLPDVILDAYTANQKTENLAAMIKRFNETQASQIMLEPVAQEDVSKYGIADINGVQLTPGMSAAIKTMVEKPPADIAPSNLAVVGRYVLSKNIWPLLAKTPVGAGDEIQLTDAIDALMTQETVEAFHMSGRSHDCGDKLGYLKAIVEYGMRDAKLGKEFTQHLNILMNGEN
>NZ_CP012737.1|WP_096792450.1|585044_586211_+|nucleotide-sugar-dehydrogenase
MKVAVVGTGYVGLSNAMLLAQHNEVLALDIDEQKIALLNNKKSPIVDTEISEFLTRSDLNFTATTDKVEAYKNADFVIIATPTDYDVENNYFNTSSVEAVIKDAITHNPHAVMIIKSTIPVGFTQSIKETLGISNLIFSPEFLREGKALHDNLYPSRIVVGEQSERASVFANLLQQGAIKKDIEVLFTDSTEAEAIKLFSNTYLAMRVAYFNELDSYAEAHGLNSKQIIQGVSLDPRIGNHYNNPSFGYGGYCLPKDTKQLRANYANVPNNIIGAIVDANTTRKDFIADSIVKRNPKVVGVYRLVMKTGSDNFRASSIQGIMKRIKAKGIEVVVYEPVLQESEFFNSRVIKDLSEFKQISDVVVSNRMVAELIDIKDKVYTRDLFGSD
>NZ_CP012737.1|WP_096792458.1|599355_600420_-|CDP-glycerol:glycerophosphate-glycerophosphotransferase
MLNKDLPSLNKTSEFKYLFFVNLSYSFNVLRPIEHEIKKRGGSVAWFIPTGSEAEGFLQPDDYQLLNIKEVKKYNANATLAPGNVIPHFFPGIKVQVFHGFDSGKKNKFNIRGFFDLYCTQGPNITQGFNDINDGTCDVVETGWSKLDPLFTEHKDIALYQSDKPTILYAPTFSPKLTSTYKLYPYIKALLKTQNWQWIVKLHPKATSEEIEMYKSLACENLTFITTGDVIPILQATDIILSDTSSIITEFALQEKVAVAFNNRKPKDWMINFSNEADLESTLISAFQKDEHTLEKVKQYCDSVHPYRDGKSSVRVLGAINNLICSGTSHLKRKPLNLLRKFKIRKSLNYYWWS
>NZ_CP012737.1|WP_096792459.1|600825_601326_-|DUF3299-domain-containing-protein
MTFYKTAFQYITIINLLLVSFASNANPPKEIFWEDLIPKNHVQIDTQAQANHEGSDQNWVQPDLDAPVVKALNGQSVSLPGFVVPLEGDSEIITEFLLVPYFGACIHVPPPPPNQIVHVTIKGGVPIDSLYDAIVVTGVISTETWSGEIAQVGYKMKAVGVAPFEL
>NZ_CP012737.1|WP_096792460.1|601340_602654_-|ABC-transporter-permease
MILAKLAYKSLLNRRASVFLTLFTIAISVILLLSIERVRVDAKSSFSNTISGTDLIVGARTGDIQLLLASVFRIGHTNNGVSWQSYQYITNQRGVKWSIPISLGDSHKGQAVLGTTLDYFEHYRFAKKQNLSFNQGHPFLNINEVVLGSSVANKLGYKLGDHIVISHGMGNTSFHHHDDNPFKVVGILNPTGTPVDKTLHIPLAAIDLIHARASTKHDEHDEHDEHDEHDEHDEHDEHDEHDEHDEHDDLIGHPKQITAFLMGFKSPLYTLQIRRNINQYKQEALLGIMPTVTLKELWQMLAIVEKTLQLFSAIVVLVSLLGMLTTLLANLSQRRRELAILRSVGARPWQLFTLISIESLLTTLLGCLVGCALFYLVMYLGAGYLQSHAGISVNIAMLSYYELTLIGVIMVAGFIIGLVPATRAYFYSLSDGMSIKT
>NZ_CP012737.1|WP_096792461.1|602650_603337_-|ABC-transporter-ATP-binding-protein
MISLKNVTFKWHKNDKKPTLRIAELAVEKGERIFLYGPSGSGKSTLLALLTGINTATSGDVYILNQCLNTQSNTKRDAFRADHIGTIFQNFNLLPYLTPIENVILGCQFSKVRQNQALKHATTLHKEAERLLNALGLIEQYHHKNVAQLSIGQQQRVAAARAFIGNPELIIADEPTSALDANNRESFITLLFEQALHLNSTLIFVSHDESLKPLFDRSINLTHLQEQI
>NZ_CP012737.1|WP_096792462.1|603727_604831_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MTSYKVLDVNDDLPIRTKGEVHSGKVRSVYWLTDEDSARLISDKGYKVPAGTELAIMVISDRISAFDCIWQGENGLNGVPGKGIALNSVASHWFKLFDQAGLAGNHIVDIPHPYVWIVRKASTVKVEAIARQYITGSMWRDYAKGVRNFCGIDLPEGLKANQKLDNVLITPSTKGIIEGVTDIPPVDDVNITRANITNNLDVFNFKSADDVTKYEKLLVEGFRLISDELAKLDQIFVDTKFEFGYVEDLNGAQQLIYIDEVGTPDSSRIWDEAAYRDGKIVENSKEGFRQLLINNVPESDVLLNKDRMNEREQLAKDYILPESVMLEVSNTYVGIASKIVGKDIVIPSDPRQEVIAILDAEYGLIVK
>NZ_CP012737.1|WP_096792463.1|604953_605610_+|methylamine-utilization-protein
MLERALQKIAKNRCFLAIGLFFSHFALSANIDLVIQEQHGQALPDAVVELNQNNIKSAFTPKTVATMDQVNKQFSPELLIVQKGQQVNFPNSDNIRHHVYSFSQAKPFQLKLYSGQPKDPIVFDKPGVVVLGCNIHDSMIGYIYVADNHLVYKTDERGRVTLPATSSEVTVWHPLQRAALENKKIITINSQTQLLITINTSVPELRNIFGSKFKAQND
>NZ_CP012737.1|WP_096792464.1|605602_607918_+|EAL-domain-containing-protein
MTNSLKNRITILCVGLVLLTTVVSLFSFWWSTSKLQEEKVNQDISVAQSVYKQYLKSKESLLLTAAKVLTSDFGFKQAVATRDAGTISSVLFNHSQRINAELMLLIDLSGKLISANTSEDIYGHDLQPLMKELLSTSEQSSFVVLNNELYQVILLPVKAPRTVAYSLVGFKINNEVAAELKSLTGMDVSFIGSADNLVISSLVKRPTPFEPVNYFNTLTTSRFFGEYLVYRNRDIDLPSLLSHPIVILLSADLTQSYSDFEKLFFTLMILAILTMFVGVITSSLLANNLTTPLSQLAVIARQFAQGNYSFECKGKKQSTEITTLVDAFNSMGNDINEREKQICFQARHDSLTGFYNRSAMLDVLGDELDTSNEYTLVAIDIKGLRHINDKLGPRVGDDCLKAVASRISEFSDELGGFHARIGGDEFLTVFPATAAQELKSGIDGLMMQLQACYTIQKLKINLRFSAGIVQYPAQGITSDDLMRRVLIAVDSAASDHESIHYYQSGEDETHLERLIMLDELKQAIIDDDGQLFMTYQPKLHMKTQKIDKVESLIRWQRKDGSWVNPELFIDLAEQSGLIVELTAWVVNTVVAQVANWQSKGIELQAAINVSAQDIAFSGFHSALVSTLEKHKVDPKLITIELTERDMIENEEKGIKALENLKAIGVKISLDDYGVGQTSLGRLKMLPIDELKLDKCFILKLDESQKDQFIVQSSITLGHQLGFSVVAEGVETLGSLELLKNMQCDHAQGYYLSRPLKAELLEEWLLDHYVSH
>NZ_CP012737.1|WP_096792465.1|607904_608738_+|DUF3034-family-protein
MYHIKYWSVVAFCLMSLPCVASSGKLLATPGVSQIEGNAGGGIVPWAQLAGYASDDEFSINGFCSRADVTDYTLDVCGAQLNLFNRVEFSYAIQQFDVPAFNAQIEQNISGVKVRLYGDIVYSEWPQLSAGILHKSLDDGSIAQLVGAKSTSGTDFYLAASKLHLGAIAGYNWFWNLTARYSEANELGLLGYGGESDSTRVLFEGSTALFLSRELAVGVEYRQKANNLNLGEQDWKDVFVAWIPNKYVSITAAYLDLGRIAGANDQTGWYFSVTGYW
>NZ_CP012737.1|WP_033031584.1|608737_609157_+|group-1-truncated-hemoglobin
MQNIALFLLCAGLLVGCANKPALSLYQQLDGKAGIAKLVDSFIYQIGNDEQVFHYFEHANITHFRDGFISHMCMLFEGPCEYRGDSMIAIHTGMNISEKDFNHVVDLLVNAMNEQNISYNVQNKILSKMAPLRGGIIKI
>NZ_CP012737.1|WP_096792466.1|609221_610286_+|CDP-glycerol--poly(glycerophosphate)-glycerophosphotransferase
MNIIFDTQSLYYLPQYIPVFKKLCENGIKSQFVFYKNSHQDLIQGVIDNYNLEHIWVENQLQAIDYYEQEKSDWVFFANSFCHLERLHKVSKSAQLGHGIGPKSSYYTKSSQAMTARFVEGEYRLSRLQSMYPDDTFIDVGFCKLDPIFNNEEIDGALSLEGFSDKKQTILYAPTFYPSSLELFPENWPEHFSDYNILIKPHYFSISKEKYKCHLALLNHWSTFPNVYLAKVEDYSLVPFLDKADLLISDASSALFEFALLNKPVIWCDFLKLRWSYKGIFSFRFKKRMDRDYGEYANIAVHASKYKNLKKLVVEQLAKPEKLANTRLALSEKLAGKLDGKASQRIVEYIIENN

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Crispr_ID: NZ_CP012737_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012737_2

1634265-1634367

Orphan

Consensus_repeat	Method
TAAGTTACATGAGCGCGAAGTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012737_2

>merge|NZ_CP012737|2|1634265-1634367|CRISPRCasFinder
TAAGTTACATGAGCGCGAAGTAAATTCGCACCTACGGGTATATGCTGTAGTTCAGGATTACACGTCGCGTTTAATGGCTTTAAATTACATGAGCGCGAAGTAA

>NZ_CP012737|2|2|1634265-1634367|CRISPRCasFinder
TAAGTTACATGAGCGCGAAGTAA	ATTCGCACCTACGGGTATATGCTGTAGTTCAGGATTACACGTCGCGTTTAATGGCTT
TAAATTACATGAGCGCGAAGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012737.1\|WP_096794100.1\|1636072_1637257_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP012737.1\|WP_007375446.1\|1630087_1630351_-\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377032
NZ_CP012737.1\|WP_096792926.1\|1632485_1633127_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP012737.1\|WP_096792933.1\|1640274_1641843_-\|anthranilate-synthase-component-1	unknown	unknown	gnl\|CDD\|237428
NZ_CP012737.1\|WP_096792928.1\|1634611_1635190_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NZ_CP012737.1\|WP_096792931.1\|1638621_1639659_-\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_CP012737.1\|WP_096792924.1\|1626559_1627642_-\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|224152
NZ_CP012737.1\|WP_077538106.1\|1633960_1634230_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NZ_CP012737.1\|WP_096792927.1\|1633193_1633769_-\|septation-protein-IspZ	unknown	unknown	gnl\|CDD\|234704
NZ_CP012737.1\|WP_008138354.1\|1643785_1644622_+\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NZ_CP012737.1\|WP_096792925.1\|1627681_1628092_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096792935.1\|1643158_1643779_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|183245
NZ_CP012737.1\|WP_096792932.1\|1639670_1640273_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NZ_CP012737.1\|WP_007375445.1\|1630499_1630793_-\|YciI-family-protein	unknown	unknown	gnl\|CDD\|183103
NZ_CP012737.1\|WP_007375444.1\|1630991_1632416_+\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP012737.1\|WP_096792930.1\|1637264_1638629_-\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	unknown	unknown	gnl\|CDD\|236509
NZ_CP012737.1\|WP_007375447.1\|1629409_1630084_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP012737.1\|WP_096792934.1\|1642307_1643162_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_CP012737.1\|WP_096792929.1\|1635254_1636076_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NZ_CP012737.1\|WP_008138328.1\|1628078_1629416_-\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|182754

Protein	Function_ID	Function_description	E-value
NZ_CP012737.1\|WP_096794100.1\|1636072_1637257_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP012737.1\|WP_007375446.1\|1630087_1630351_-\|PepSY-domain-containing-protein	gnl\|CDD\|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	0.00149543
NZ_CP012737.1\|WP_096792926.1\|1632485_1633127_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.721e-08
NZ_CP012737.1\|WP_096792933.1\|1640274_1641843_-\|anthranilate-synthase-component-1	gnl\|CDD\|237428	PRK13564, PRK13564, anthranilate synthase component 1.	0
NZ_CP012737.1\|WP_096792928.1\|1634611_1635190_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	8.42952e-78
NZ_CP012737.1\|WP_096792924.1\|1626559_1627642_-\|NAD(P)-binding-protein	gnl\|CDD\|224152	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism].	4.95849e-19
NZ_CP012737.1\|WP_077538106.1\|1633960_1634230_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	7.34463e-36
NZ_CP012737.1\|WP_096792927.1\|1633193_1633769_-\|septation-protein-IspZ	gnl\|CDD\|234704	PRK00259, PRK00259, intracellular septation protein A; Reviewed.	2.52054e-64
NZ_CP012737.1\|WP_008138354.1\|1643785_1644622_+\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	3.03664e-54
NZ_CP012737.1\|WP_096792931.1\|1638621_1639659_-\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	7.71624e-178
NZ_CP012737.1\|WP_096792935.1\|1643158_1643779_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|183245	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase.	2.48978e-116
NZ_CP012737.1\|WP_096792932.1\|1639670_1640273_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	1.39478e-84
NZ_CP012737.1\|WP_007375445.1\|1630499_1630793_-\|YciI-family-protein	gnl\|CDD\|183103	PRK11370, PRK11370, YciI family protein.	2.91284e-56
NZ_CP012737.1\|WP_007375444.1\|1630991_1632416_+\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	2.1979e-144
NZ_CP012737.1\|WP_096792930.1\|1637264_1638629_-\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	gnl\|CDD\|236509	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF.	0
NZ_CP012737.1\|WP_007375447.1\|1629409_1630084_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.58705e-78
NZ_CP012737.1\|WP_096792934.1\|1642307_1643162_+\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.42745e-79
NZ_CP012737.1\|WP_096792929.1\|1635254_1636076_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	1.67626e-116
NZ_CP012737.1\|WP_008138328.1\|1628078_1629416_-\|GHKL-domain-containing-protein	gnl\|CDD\|182754	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ.	3.23956e-58

>NZ_CP012737.1|WP_077538106.1|1633960_1634230_+|HU-family-DNA-binding-protein
MNKAELVAAIAHKSELTKKDAQAALSSLQKVITKSLSEGDQVQINGFGTFALSYYPARTGRNPQTGAAIEIEGANKAVFKPAKALKDLL
>NZ_CP012737.1|WP_096792927.1|1633193_1633769_-|septation-protein-IspZ
MHALIEYIPLILFFAVFKLVDIYWATGLLMATTLIQVAYSYFKHGNVPTRHWIFFGIAAVFGTLTLVLHDEQYIKWKATLIYAGLSLTLLVSRYVLNKNLVKKALSSILENANDTKQAIVVPEPLWDKLNLMWVAITAGIAALNIYIAYNFSLDFWVNFKVFGLMGITFVSIFATIIALYKYFPDEEEPAK
>NZ_CP012737.1|WP_096792926.1|1632485_1633127_-|CPBP-family-intramembrane-metalloprotease
MNANQYRWFEFTLIFILLPLLGFGLREHLANWLIPALIILMSVCCMLLLGDPHFKRFRLTSLGQFSAVKRRVFSFFFLGALFSGMFYGIIHQGNWFTLPRNSFNDWLLLLVLYPILSVIPQELIFRTYFFHRYKRIMPKKAVRIVVSASVFALAHIVYANWIAVALAFLGGLLFAYTYAKSRSTFVCVIEHSLWGLWMFTLGIGSYLDSGAFN
>NZ_CP012737.1|WP_007375444.1|1630991_1632416_+|sodium-dependent-transporter
MSDNRERFSSRLGFILAAAGSAVGIGNLVGFPVSATKNGGGAFLLIYALFVVFICLPVMMAEMAMGRNAQKDPLGSYKLLANNDKKWKFAGFLAVLTPFMIAVFYMVITVWIFGYLMQTGLGNLDLLAEPSHFGVFINSYTVFGYMAVVVIIVNLILLGGVKQGIEKAAKFLMPALLVMLLALVIYVLTLDNAMAGVKYYIIPDFSKMSASVLNGALSQAFFSLSLGMGILMTYASYISKKDDIVSSAKMVAITDSLVAFVAGLMVLPAIFSFDPNTDPSALSDSSVSMIFVYLPKILLALQNDIGYVGASIVAFSFFLLVFFAAITSLVSIVEVPTATLSDRKGISRKKALGILTLTTGVLTILCTMSFGMIDSLTSFTSYGGVNKSFFDIIVDVFYDTILPLNGLMVCLFVMYRWKKARLTQELSLGSPNYAGSLMEKYVNFSLSTFIPIILAVIFINTVATKFFALKIFGF
>NZ_CP012737.1|WP_007375445.1|1630499_1630793_-|YciI-family-protein
MIHSTDVENSLELRKAARPAHLERLNELDSQNRLFTAGPFPAVDSEDPQEAGFTGSLVVAEFDSIEAAREWAAADPYVAAGVYENTVVKPFKKVFPA
>NZ_CP012737.1|WP_007375446.1|1630087_1630351_-|PepSY-domain-containing-protein
MRILLSLTFIACTSFASFSQVNTTATNPTAKAEVSKKKAVILAKKTINGKTLKISEQTDFYTVRILKSDGHVVDLHINKKTGEVKKD
>NZ_CP012737.1|WP_007375447.1|1629409_1630084_-|response-regulator-transcription-factor
MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGIELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSAGKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYDQDFDLDSNVIEVFVLRLRKKLDPEGVLNPVETLRGRGYRLKSQW
>NZ_CP012737.1|WP_008138328.1|1628078_1629416_-|GHKL-domain-containing-protein
MVIPQISLKIRQGFILVFVLLVALPILFYSIGKAYYASLVDATEKTLEAQLYSLISEVDFTEHGIIMPSTILAPELNRLNSDTYAMIYRDDEPIWHSESAVNVNFVPQQVETKAGAADFRRVEYKNTAYWQLSLTVILNNIDQSEQARFILVKRNDALLRLMDGFKQTLVDWMFIMGIAIAGLMAVGFIWSARPLQRLDKEIKAIESGDIQEIKGLYPIELQTIKSDLNLLLDSQQRQKERYRASLSDLAHALKTPLAVLKSSPLANDADAQEQLDRINVMIEHQLKRAATGASDTWKKQTPIKPVLDSILSAMAKVYRDKDIIFSCTVTDKDYFLGDQTDLMELLGNLIDNACKACRSQVEIQVVQSKTLCIGISDDGPGVPEDKRESLLTRGTRLDTYESGHGVGMAIVSDLVKSYHGTLTITKADNLGGAQFILEFNYNDKK
>NZ_CP012737.1|WP_096792925.1|1627681_1628092_-|hypothetical-protein
MIKSNNLLKLTAIVLLIISQYSFANEACTLVKKATTDEAKRYIQCLDTQINKAKLVQGSWIQKRKYELTTSQESTGNTQILPLFMRSISNNEKYIESACQWRYLLKLPNATTAAISYKICEIQLINQFTDALKKPF
>NZ_CP012737.1|WP_096792924.1|1626559_1627642_-|NAD(P)-binding-protein
MIKPVIIIGGGLAGLYSAYQLRLLNTPYLLLEAKSQLGGRIYSAQSPINSGVSFDLGPTWIFPHQPKIQALIKSLNLSLFEQYTKGDVLYQSPHSEQPQQIAGAGEMQLFRLKHGMNTLITALYEQLNPDFVLLNHNVTELKKSGDSWQITVNHLGNIKHFNTNKLMSAIPARMVTAHLTPEQWATPTLISRLNSVPTWMAGQAKFIATFEHAFWRDNNLSGQCFNRVGPMVEIHDASAEDDNYAALFGFIGMPYLSRSEVTKEQLIQACVQQLSYFYGQDAKKATGYFIKDWAEDELVANEDDRTQSSQHPEFNFSGLGEQLSNLNIHFVASEFAKQEAGYLEGAINAVDEAINSIISL
>NZ_CP012737.1|WP_096792928.1|1634611_1635190_+|type-1-glutamine-amidotransferase
MSTLQISTRLQGKKIAILATDGFEQSELLSPRSALLDAGANIEIVSIKEGQITGWDEDKWGDKVTVDKLVTNADPADYDALMLPGGLFNPDSLRQDKDAKAFIDGFFGAEKNKPVAAICHAPWLLAEINKLRDRTITSFPSIKSDLINAGANWVDQEVCVDKGLVTSRSPADLEAFNAKFIEEILEGKHQAH
>NZ_CP012737.1|WP_096792929.1|1635254_1636076_-|tryptophan-synthase-subunit-alpha
MSQVKTDRYGKMFAALNEQKQGAFVPFVTIGDPGKEQSVAIIKSLIDGGADALELGIPFSDPIADGPVIQKANIRALDVHINTQDCFDIIKEIREYNADIPIGLLLYSNLVFKRGIEAFYKDAKAVGVDSILVADVPLHESKIFRKSAMDNGVDPIFIATPNADDDTLRQCASYGRGYTYLLSRAGVTGTDTKAQMPAGNIVTKLKEYHAAPALLGFGISTPDDVKAALNAGAAGAISGSAVVKIIEANLNDLDAMTTQLKAFVSEMKAATAL
>NZ_CP012737.1|WP_096794100.1|1636072_1637257_-|tryptophan-synthase-subunit-beta
MQNPAYFGEFGGMFVPELLVPALKQLENEFNKAQKDPEFQAELSKLLNEYAGRPTPLTLTRNLVKNPKVKLYLKREDLLHGGAHKTNQVLGQALLTKRMGKKQVIAETGAGQHGVATALACALLGLKCRIYMGAKDVERQQPNVFRMKLMGAEVIPVTAGSGTLKDAVNEALRDWSANYQDAHYLLGTAAGPHPFPTIVREYQKIIGEEAKQQVLKAEGRLPDAVIACVGGGSNAIGMFTDFIDEPGVKLIGVEPAGKGLDTNEHGATICKGTKGILHGTYTYIMQNDDGQIEESYSVSAGLDYPAVGPQHAFLHETGRAQYVGITDTEALDAFQSLAKNEGIIPALESSHALAYALKYAEEQTEESVLVINLSGRGDKDLAHVHNVLTERGQL
>NZ_CP012737.1|WP_096792930.1|1637264_1638629_-|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF
MANVLDKIVADKKLELIERKAARPLESFKHLAVPTSRSFYKALAAPGTQFILECKKASPSKGLIREPFDLTEITSVYKKYATCMSVLTDAKYFQGSFDYLEFVRSQVEQPLICKDFFIDEYQVYMARIYGGDAILLMLSVLDDESYKALHAVADSLNMSVLTEVSNEEEVHRALALDAQIIGINNRDLRDLSTDLATTEKLRKLIPADKVVISESGIYTHHDVKRLAPLCDGFLIGSSLMGERDLEQACRRVILGDNKVCGLTRSQDAQAAYQNGAVYGGLIFHPKSPRYVDLDCARELSQSAPLNFVGVFVDAPIEQVAQYASVLKLAAVQLHGQESDDYIADLRTQLPTNCEIWKAQAIKDALPTPVNGVDRHLYDTHSDTQAGGTGKAFDWSVLSGGTTPFMLAGGLNPDNIEDALFKGALGLDLNSGVEESAGKKCPNKLHNAFTSIRNY
>NZ_CP012737.1|WP_096792931.1|1638621_1639659_-|anthranilate-phosphoribosyltransferase
MSTQPEQPINVQHAIEQLITGQSLSYADAKALFDEIMQGNMSEIELTALLISLKIKGEVSDEIAGAAASMRENAVAFTTSSTQLADSCGTGGDGSNTINISTTSAIVAAAAGINMVKHGNRSVSSNSGSADLLKALGINIDMSPEQAAKCLEQTNFTFLFAPHYHSGVRHAMGVRTSLKTRTIFNILGPLANPAAPEVQLLGVYNEALCMPMAQTLKTLGTKRAMIVHGSGTDEIALHGPTTVVELNNGEITQYTLNPSDFDLANYSLEQLAGEGPQYNANASLAILQGKGTDAHNAAIVVNVAALLYLTGKAETLKEGAKQVQTLLSSGQAMNTLNAIIEVSNG
>NZ_CP012737.1|WP_096792932.1|1639670_1640273_-|aminodeoxychorismate/anthranilate-synthase-component-II
MSKTNPIKIYFLDNFDSFTYNLVDELTMLGCELVVYRNNISAEVIFNKMRQEQGQVLLVLSPGPGTPSDAGCLMELIELSKGHFPMLGICLGQQALTQSYGGVIGHAGETVHGKSSIIKLGEHPVFDGMGNTMPVARYHSLMATKVPDNIKVIAQYEDIPMAIYHHDDNALGYQFHPESILTPNGAMLLQQSVAYLTRAK
>NZ_CP012737.1|WP_096792933.1|1640274_1641843_-|anthranilate-synthase-component-1
MIFSHITTTPGEVTSITQVRDYISSPLALYAALDKPNSLLLESAEIDSKDSVKSLILVDCALRIVCQDKTVTINAQSNNGQQLLSYLQANVKSCDATLDGETLTLCYLDTSGDTDEASKLVADNAFSALRTCINSIKSTTNNPFSVFLGGVFAYDMVANFEQLSDVPDGENTCPDYVFYLAETLVLIDHQKQTTELIGNVFNGPDVHANCFEVGKELERLNTLCDNAAEFSAEMQSGECEVSVDIDDDTYCEQVVKLKKNIVDGDIFQVVPSRTFSLPCPDSLHAYSQLKKQNPSPYMFYMRDEDFALFGASPESALKYDVSNQQVEVYPIAGTRARGKFTNGQINPDLDSRIELELRNDQKERAEHLMLVDLARNDVARISVAGTRFAKELLKVDRYSQVMHLVSRVVGTLKPELDALHAYQACMNMGTLVGAPKVRAAELVRQTEGKRRGSYGGAVGYLTGDGAMDSCIVIRSAFVKNNKAYVQAGAGVVFDSDPISEANETRAKAQAVITAIKSTYKAV
>NZ_CP012737.1|WP_096792934.1|1642307_1643162_+|PHP-domain-containing-protein
MIKYDLHSHTTHSDGRLTVEELLHRAVDKNIDVFAITDHDTVAAIKPAQQFIEAENLPLSLITGTEVSTKWESFEIHIVGLNIDINNIDLTSLLSAQQQKREERALEIGARLAKNGFNGIYEQAKELAKDAQITRAHFARALIERGVAKNFPGVFKKYLGRGKTGYVPSCWCTMQTAVEAIHAAGGVAVLAHPSSYQMSNKWLRKLLVEFKSVGGDAMEVAQPQQAPSERQFLGELSREYELLCSQGSDFHFPTSYLELGKNLYLPKDCQGVWQVWEGQEGALT
>NZ_CP012737.1|WP_096792935.1|1643158_1643779_+|threonylcarbamoyl-AMP-synthase
MSQLFHIHPDNPQPRLISQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKNDNFTLVCRDLSELSTYARVDNQLFRLIKNNTPGPYTFIFKGTKEVPKRLLNDKKKTIGMRVIEHPIACALLAELGEPLMSCSLILPGQQFTESDPDEILERLDKHVDLIIHGGYLPEQATTVIDLSEDDVKILRVGCGDTSPFE
>NZ_CP012737.1|WP_008138354.1|1643785_1644622_+|segregation/condensation-protein-A
MSENTADTKSSEKPVQQKLPLAFLHGKAVVDKPEDLYIPPDALEIILETFEGPLDLLLYLIKKHKLDVLDLSIFSITEQYVSYVEMMTEFQLELAGEYLVMAALLAQIKSRLLLPVHEELEEEEDPRAELIKRLQEYELFKKAAENLDDIPRVGRDIFIAHAAMPINEDTSQNLPDIELKDLMLALSDVMARAKTFEHHQITAEVLSTRERMSQILQQLSKANSAVVFNALFTPDEGRSGVVVSFIAMLELIKEGLVTCLQVSPESLIYVSLSEQSTL

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Crispr_ID: NZ_CP012737_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012737_3

2222121-2222257

Orphan

Consensus_repeat	Method
GTACCACTTCAAAGTAATAAAAAAACCGAAGAAAAAGCACTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012737_3

>merge|NZ_CP012737|3|2222121-2222257|CRISPRCasFinder
GTACCACTTCAAAGTAATAAAAAAACCGAAGAAAAAGCACTACCCACTCTTGATCACCCGGTCCAATGGCCAGCAGTTCGAATCCACTCAGTAGTACCACTTCAAAGTAATAAAAAAACTGAAGAAAAAGCACTACC

>NZ_CP012737|3|3|2222121-2222257|CRISPRCasFinder
GTACCACTTCAAAGTAATAAAAAAACCGAAGAAAAAGCACTACC	CACTCTTGATCACCCGGTCCAATGGCCAGCAGTTCGAATCCACTCAGTA
GTACCACTTCAAAGTAATAAAAAAACTGAAGAAAAAGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012737.1\|WP_007375655.1\|2218365_2218569_+\|CPXCG-motif-containing-cysteine-rich-protein	unknown	unknown	gnl\|CDD\|379524
NZ_CP012737.1\|WP_096793239.1\|2215107_2215893_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793243.1\|2220658_2221711_+\|DUF3080-family-protein	unknown	unknown	gnl\|CDD\|378622
NZ_CP012737.1\|WP_084166018.1\|2225296_2226274_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379106
NZ_CP012737.1\|WP_096793249.1\|2227845_2229189_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793251.1\|2231267_2232308_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
NZ_CP012737.1\|WP_096793248.1\|2227098_2227476_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793238.1\|2212370_2213612_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238634
NZ_CP012737.1\|WP_007375657.1\|2216560_2217253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793242.1\|2219325_2220681_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP012737.1\|WP_008136198.1\|2213624_2215007_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238634
NZ_CP012737.1\|WP_096793247.1\|2226434_2226791_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793245.1\|2222485_2223634_-\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|240658
NZ_CP012737.1\|WP_096793250.1\|2229796_2231194_-\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP012737.1\|WP_157770542.1\|2224296_2225037_+\|DUF2971-domain-containing-protein	unknown	unknown	gnl\|CDD\|378585
NZ_CP012737.1\|WP_096793240.1\|2216142_2216502_+\|DUF3718-domain-containing-protein	unknown	unknown	gnl\|CDD\|378871
NZ_CP012737.1\|WP_096793253.1\|2234191_2235148_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP012737.1\|WP_096793252.1\|2232519_2234130_+\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|350114
NZ_CP012737.1\|WP_096793241.1\|2217377_2218250_+\|fructosamine-kinase-family-protein	unknown	unknown	gnl\|CDD\|367711
NZ_CP012737.1\|WP_096794117.1\|2218570_2219197_-\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846

Protein	Function_ID	Function_description	E-value
NZ_CP012737.1\|WP_007375655.1\|2218365_2218569_+\|CPXCG-motif-containing-cysteine-rich-protein	gnl\|CDD\|379524	pfam14255, Cys_rich_CPXG, Cysteine-rich CPXCG. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There are 5 conserved cysteines which occur in a CPXCG motif and a DCXXCCXP motif.	6.02496e-21
NZ_CP012737.1\|WP_096793243.1\|2220658_2221711_+\|DUF3080-family-protein	gnl\|CDD\|378622	pfam11279, DUF3080, Protein of unknown function (DUF3080). Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently this family has no known function.	1.83342e-75
NZ_CP012737.1\|WP_096794117.1\|2218570_2219197_-\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	5.0778e-99
NZ_CP012737.1\|WP_096793251.1\|2231267_2232308_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	8.88033e-127
NZ_CP012737.1\|WP_096793238.1\|2212370_2213612_-\|amidohydrolase-family-protein	gnl\|CDD\|238634	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	1.57086e-60
NZ_CP012737.1\|WP_096793242.1\|2219325_2220681_+\|MATE-family-efflux-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	3.70751e-155
NZ_CP012737.1\|WP_008136198.1\|2213624_2215007_-\|amidohydrolase	gnl\|CDD\|238634	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	4.98155e-138
NZ_CP012737.1\|WP_096793245.1\|2222485_2223634_-\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|240658	cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase. N(5)-(carboxyethyl)ornithine synthase (ceo_syn) catalyzes the NADP-dependent conversion of N5-(L-1-carboxyethyl)-L-ornithine to L-ornithine + pyruvate. Ornithine plays a key role in the urea cycle, which in mammals is used in arginine biosynthesis, and is a precursor in polyamine synthesis. ceo_syn is related to the NAD-dependent L-alanine dehydrogenases. Like formate dehydrogenase and related enzymes, ceo_syn is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. These ceo_syn proteins have a partially conserved NAD-binding motif and active site residues that are characteristic of related enzymes such as Saccharopine Dehydrogenase.	1.38568e-148
NZ_CP012737.1\|WP_096793250.1\|2229796_2231194_-\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.07861e-156
NZ_CP012737.1\|WP_157770542.1\|2224296_2225037_+\|DUF2971-domain-containing-protein	gnl\|CDD\|378585	pfam11185, DUF2971, Protein of unknown function (DUF2971). This bacterial family of proteins has no known function.	1.59438e-08
NZ_CP012737.1\|WP_096793240.1\|2216142_2216502_+\|DUF3718-domain-containing-protein	gnl\|CDD\|378871	pfam12514, DUF3718, Protein of unknown function (DUF3718). This domain family is found in bacteria and viruses, and is approximately 70 amino acids in length. There is a single completely conserved residue C that may be functionally important.	1.67557e-07
NZ_CP012737.1\|WP_096793253.1\|2234191_2235148_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	7.7331e-66
NZ_CP012737.1\|WP_096793252.1\|2232519_2234130_+\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|350114	cd09000, GH43_SXA-like, Glycosyl hydrolase family 43, such as Selenomonas ruminantium beta-D-xylosidase SXA. This glycosyl hydrolase family 43 (GH43) includes enzymes that have been characterized to mainly have beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activity, including Selenomonas ruminantium (Xsa;Sxa;SXA), Bifidobacterium adolescentis ATCC 15703 (XylC;XynB;BAD_0428) and Bacillus sp. KK-1 XylB. They are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. These enzymes possess an additional C-terminal beta-sandwich domain that restricts access for substrates to a portion of the active site to form a pocket. The active-site pockets comprise of two subsites, with binding capacity for two monosaccharide moieties and a single route of access for small molecules such as substrate. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	0
NZ_CP012737.1\|WP_096793241.1\|2217377_2218250_+\|fructosamine-kinase-family-protein	gnl\|CDD\|367711	pfam03881, Fructosamin_kin, Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.	2.30722e-115
NZ_CP012737.1\|WP_084166018.1\|2225296_2226274_+\|hypothetical-protein	gnl\|CDD\|379106	pfam13289, SIR2_2, SIR2-like domain. This family of proteins are related to the sirtuins.	3.23737e-09

>NZ_CP012737.1|WP_096793243.1|2220658_2221711_+|DUF3080-family-protein
MNHSLPSKLIIKRSLPVVILLLVSVFTLTSCSKAPSSINNTYITRLSDTLNTSPITPVVLEQLKLTRPSVLSESKITLSIVELAGLTRCRLNILISEHNNQLGKTATAANQLKYQINFIQSADNCLNTLDDNTAIYSKISDAKNQKQAHLMHYFNTMLFKEPELNRTWLLTSNELSMQPAGYSDTVEALTQLVTIKKQIKSQQFSQVNTDSLFNALEQLNKYRFNQALVQSARQQIALNNSATQFVKTISFGDLCPTGKNKKEAKIISNVFQKYYLKQIQPYQAQLTGYLEVLQPLYNRLWFEENITVKQINYLIDENSPNNLLNQLKGSAVEHVVWWQKFYKTCEISPI
>NZ_CP012737.1|WP_096793242.1|2219325_2220681_+|MATE-family-efflux-transporter
MTFCNWEAKRLLSLALPVFLAQVTLVLMSVVDTIMAGQVSPTDLAALSIATGIWNPLLLALQGILLALTGIIAQYAGANDKKGISHYFQQALYLTVLLSAIGFGITYLADIIILRLDTSPAIASLAFDYIHFVKWGVFGFLIFTTYRNMTEGMGMTKPAFYISLLGLAVNIPVNYIFINGLFSLPAYGGAGCGIATAIVLTVMAIAQVTYCQLSKKVDAKGLLTPFEKPNLATIATITKLGIPISLATFFEVTLFACIPLFIAHLGAVAVSGHQIAASVTTLLFMMPLSLSIAISIRIGNLYGQNHLKQLRIAVSTSYILAIVIALFLALITFTGRDLISQLYTDSPEVIALATSIMILACVYQLPDALQVAANGVLRGLKYTAPISYITFISYWLIGFSLGYVLARTDIIVPAMGPHGFWVGIIVGLTVAAVLLILTVNKRFKREPFITE
>NZ_CP012737.1|WP_096794117.1|2218570_2219197_-|riboflavin-synthase-subunit-alpha
MFTGIVQTQATVVSKTQTAGVLRLVISVSDEYARHLDLGASIAINGCCLTVVQVELSNHDVVAQVHFDVIDETLKLTNLGLLELGSLVNYERSVTFGTELGGHIVSGHIHCTSYISQIVKLENNCKIQLSLPKEWKKYVLYKGFVAINGASLTVGEIDEQGFWLHLIPETLAITNIGAAQVGDKLNIEVDQQTYTIVNTVENYLRHQV
>NZ_CP012737.1|WP_007375655.1|2218365_2218569_+|CPXCG-motif-containing-cysteine-rich-protein
MKDFLSQRIACPHCGHHIHLDLDASMGDQDYIEDCAACCNPIHLNMHIDYANNKLELHVDSDDEQIF
>NZ_CP012737.1|WP_096793241.1|2217377_2218250_+|fructosamine-kinase-family-protein
MWKTVNEHISQAIHYDFKHTHKRQLQSSSSDKLFHLSNGTQNYLVKVALKNELERFESEAIGLELLAQNSVFMVPDCIVTGANIEFSFIVLEWLVLDKQPHDTWSAMGKNLAKMHSIHEQAMFGFDVDNYLATTIQPNRWHKKWDVFYAEERIGWQLQLLAEKGINFVEPERLINTIKEQLHSHQVEPSLLHGDFWRGNMGFINMLPTVFNPACYYGDREVDIAMSELFAPLPENFYTAYNQQYPLSQNYQKRKLIYQLYPILNHANIFAGHYLTEAKQHIEMLTATNVK
>NZ_CP012737.1|WP_007375657.1|2216560_2217253_-|hypothetical-protein
MNKSLITNSLAGLCVVVGFVFNQAIVLSVGLFALSGAVTNLLAIHMLFEKVPFLYGSGVIALKFESFKVAIRNLILTEFFSEQKINNLLNKAQPNIDFEPIISNVDLNPAFDNLLEVIEQSQFGSMLGMFGGTAAIEPMREKFIEKMQLSLGEISQTDDFKALVTQTLSQGNSAESLYKTVLKLVDERLDELTPKMVKEIIQTMIREHLGWLVVWGGVFGGLFGLIAVII
>NZ_CP012737.1|WP_096793240.1|2216142_2216502_+|DUF3718-domain-containing-protein
MNILKATLYTGLVLSAALITTPTLAAKFVAADTSPGTQACMAVASNKAYKLRATLRDLRTSKAAINKLQCNNLPITEFVSLYNLDKSANYLNIKATTRTSIKDLAKVNMPTVTIITSPK
>NZ_CP012737.1|WP_096793239.1|2215107_2215893_-|hypothetical-protein
MSKTLASYYQQAYACDQQYFNQCFYCGCEATERDHCPPLHMLQSIVDLGEEADFISIPACYECHALLHNERLMTIDERFTKLKKKLSNKYAKPLRVYNMWEESELGDMSDEFAHSIQAGMKLGKEAAERLAFTGFSYATEDAKVAVREKTKEFDVEGMIFTDFKEALNYCINDLNVQKSDFYKILVEDYQGDFNKALSQYRHRHDKVTAAKDGNTLIKDFSKLHKQNSDFVTRTVKHFISKDPSLTTEGALEKLYNNYIKK
>NZ_CP012737.1|WP_008136198.1|2213624_2215007_-|amidohydrolase
MQKFAPSLLAVGLAAALVGCQENGPQDDKITINKNPYPSTYQPVSTSSTLITNATVLTGTGERLDETDVLLVDGKVQQVGKDLTATADITIDAQGKWVTPGIIDVHSHLGAYPSPSVESHQDGNEMTSPNTAEVWVEHSVWPQDPGFNRAREGGITSLQILPGSANLFGGRGVTLKNVPAHTMQGMKFPEAPYGLKMACGENPKRVYGRKGVLPSTRMGNMAGYRMAWAEAAEYKRAWDKYDADYAAGLNPEAPVRDIKHDTLRGVLEGEVMIHNHCYKAEEMAMMIDLSKEFGYHAGTFHHGVEAYKIADLLAQNGSCAALWPDWWGFKMEAYDMVQENVAIVDAVKNSCAVVHSDSDTTIQRLNQEAGKVMYRANENGFDISEQHAIKWITSNAAKSLGIDDKTGSLEAGKQGDVVIWNQSPFSVYAKAEQVFVDGAKVYDRNDSAYQAVSDFMLGQQ
>NZ_CP012737.1|WP_096793238.1|2212370_2213612_-|amidohydrolase-family-protein
MKNLSRSFSLSLVAAGLLASGAVSAQSLAIINATLHTSSDQGVLEAASIVMTDGKITAINPTEVKADKVIDAKGQIVTPGFIASINQLGLVEVSAVAGSRDAGEDKAGIDFDVSLAYNAHSSLVPYARKGGVTRDVITPHGGDSIFSGLASVVDLSGSFDSDIQKQAALIVYLGERSKGSRAFTLQTLINKLDEHKTKAGKKAKKDDDKPSTEDKVMAKVLTGEMPLVVGVSRAADIIELIKVKEQFGINLVLNGAQDAVVVKERVAKANIPVIISAMDSLPGSFDSLHASLDNASVLEKAGVKVLLTVGGDASHNIYQLRFDAGNAVSYGMSQEGALKAVTSNVADVFGINAGSLEVGKAADVVMWSNDPFELSSHVSKMFINGVEVSTQSRQDKLRDRYTTDSKMPRAYTK
>NZ_CP012737.1|WP_096793245.1|2222485_2223634_-|NAD(P)-transhydrogenase-subunit-alpha
MSELTIGVIGTSRKTDERRYPIHPEHLLRIPENLRKQMVFEQGYGTAFNVSDEYIATLTGGIASRSEILTHIGTAIIAKPVLADLEEMREGGTIWGYAHCVQQHEITQAAIERKLTLIAFEDMYVWSPNGNVGRHTFYKNNEMAGYCAVIHALQLKGIDGHYGDQRKTIIFSFGAVSRGAIYALKAHGFRDITICIQRPDHEVREEILDCHYVKVREGVEGEARMMVVEHDGTNRPLSDLISEADIIVNGTYQETAHPVNFVIESEADCLKPNSLIIDVSCDEGMGFFFAKPTTFKNPLFRYNNTDYYGVDHTPSYLWESATRSISAALIVYLQTILKGTLQWQKDETIRRAINIEQGIIKNTAILAFQNRENIYPYNVITQ
>NZ_CP012737.1|WP_157770542.1|2224296_2225037_+|DUF2971-domain-containing-protein
MKLKLYKYLGYDEGAKALLENGTLKYSHFSEFNDPFDCVVSYDINDSIEYYKSRKDLFKTVGDKLKLSPSERISKRKQLLKNFENSIRNGEFHKSLMDPIGICCLSSVPDSILMWSHYSKHHKGIVVEFDTFQDKYAQLSEVEKNLIGYPIVYQETMPKISVRNGKDGFAAVESTILTKSPSWGYEKEVRVLSTNSGPGIHKFDHSLISRVIAGVKMSDEEYTDLVDRVKKINLTKNLSIKVVKAK
>NZ_CP012737.1|WP_084166018.1|2225296_2226274_+|hypothetical-protein
MATEGYVARSILITGNGIGLALDPDYFSLQNGLESVWSNTEHLSNEHKDLILSAIEGTTDELPPSSEDQLDKLQVAIVATEFLSNFEVSGTSWISEPAKELPSTFRKYIHEVALHYQRSGQNLPKAFVEPLSEFVKNTKTHVVTLNYDNLLYDAFIAEKILNGYNGALIDGFWSSGFDEGHLDRHNVNRHGWYMHLHGSPLFVENSKVMYAGRDFLDPEDKCHIVLTHVEHKPLIIGSSHILSAYWRRLEKAFEESSQIILFGYSGYDDHLNNRIKLRKDEKELLIVEWEGAGSEHERKRFWETKTGFNRFELVRLENILEFTGW
>NZ_CP012737.1|WP_096793247.1|2226434_2226791_+|hypothetical-protein
MKILISIIFLFVVASVYGSTEWSDEEKNKAGWKYAKQIECAELAFYSNDYKKSEIHEKEANRILNEIIASGKMIKDEFSGYKSRAIGVTEGIEKTLQIYDKNYPSEYKKVYSFFRCHS
>NZ_CP012737.1|WP_096793248.1|2227098_2227476_+|hypothetical-protein
MRDIFGQHKQDFNEIRRLCLICHGLDLTTSSLSSENSRLVMSKNVEGTLHNLVSSNLLSLVIAIRVNLYQNAINQPNLELPNSSWLYFDDKLIEKPATLKQVCDKIIHADSFSKTVPPSGLIVVG
>NZ_CP012737.1|WP_096793249.1|2227845_2229189_+|hypothetical-protein
MDTSGFLTLVAVILTALSLTSKGKKVTYSHKIGRLHKLLLFIMFVLVIYSLFYDTFKAQNLLLPWYFVEGFDEKQLLLCASLITSAALAITFRYCETRKSNLIPLCKDIRSLLNRAAFSDLTYVLQNNIYFLEKHMDENITRKTLIEVILSNKYTSFLQDNDYKLLLELLRIDSKNDVFIAKFNEFISQQLDNHESQLLWEIAILYRSYSPRVPSANTPMLEYLYANTDASTKYSIYECIGNSAQKYVLDTNNLNTLNISPNNVQTDSIINTSQIAKYIFIFFNLLKYDLIQKKPLRFEHSIRTPWIFNKFFLRPLIQIKIELRDFENEFNTRIDYFIYESILSFERLLHDVDISYLDDLSSQDLIECVANCIFQIISSNKFEDEFKEEIIKLSIAIYSELGNNKQFAELCFRSFIGDKVCPYTPPSKFEIKKIKDSSIFFEDADLT
>NZ_CP012737.1|WP_096793250.1|2229796_2231194_-|sugar-porter-family-MFS-transporter
MNEKENVLLIVLVCFVATIGGFLFGFDSGVINGTVDGLQTAFGSSSAGTGFNVSSMLIGCAIGAFCAGRLADKFGRRLILLFAAALFIISAWGSGVSVTSFEFVIYRILGGLAVGAASVMTPAYISEIAPARYRGTLSTLQQVAIIFGLFSAFVSNYFLANTAGGSTSIFWLDFETWRWMFWVELLPACLFLIALFFIPESPRYLIMAGKKDAAARVLSSLYGAETAALKLNEIAESLAGDKHQPKLSDLIDKPKKRLRPIVWIGIGLATFQQLVGINVVFYYGAVLWQAAGFTESDALLINIISGFVSILAVFITMYFIDKIGRKPFLLTGSIGMTVTLSVIVYAFLNADIGSTGNLELGEQGIVALIAANAYVFFFNLSWGPVMWVMLGEMFPNQIRGSGLAVTGFAQWIANFLITWSFPVMLTGIGLAGAYGFYAFCAFVSVIFVFKFLHETKGKELEQMKG
>NZ_CP012737.1|WP_096793251.1|2231267_2232308_-|LacI-family-transcriptional-regulator
MADPKRARIQDVAEQAGVSMMTVSRVLNQDKKVSDKTREKVMAVVEQLNYRPNVSARRLASTKSFFLGLLYDNPSDSYISQFLLAALKKCRALGYHLVVDEAHTDIDKTIESVKQLIDVTQVDGMILLPPMCDNEEVLDVLTKANIPFVRITPDTKLNRSPYICMDDYQAAFDVTEHLINQGHSKIAHIIGDTKQGVSRLRYQGYLDALRSNKIITPPEYIEQGSFTYQSGMEAAIKLLSLDDKPTAIFAANDDMAAAVISIAQKQGINIPSELSVVGFDDTQLATIVWPNISTVKQPINEMAELAITLLASGQYNDLSNVKSLDLRHILDFELIERESSSTNKNN
>NZ_CP012737.1|WP_096793252.1|2232519_2234130_+|glycoside-hydrolase-family-43-protein
MSMLQNPILRGFNPDPNIVRVNNDYYIATSTFEWFGGVQIHHSTDLVNWRVIGQALNTVEQLDMRGVPDSCGVWAPQLSYNNGRFYLVYTNVKSFDGPWKDTPNYFVSTTDITGNWSQATYLNSSGFDPSIFHDDDGKSYLLNMLVDHRNNALFGGIVMQELCLKTNKLIGDIKPIFSGTKLGCTEGPHILKRGDYYYLITAEGGTGYEHCISVARAKNVFGPYQVHPHNPVITAAHEPSNTLQKCGHGDFFQTQNGDWYTVFLTSRPLTELGRCITGRETGIEQIIWKDDDWPYAKHTNKAPRIHVPVEGLTLNPQPQPTTHIDFSKDDLTVDFQSLRIPMCKNWVYKNTQKASLTLVGKESLSSLHQQSFIARRVQAHHTVSSTCVDFAPSSFQQMAGLVCYYNTAHYYYLHISGGDVGDETTPRYLNIISCDKYQTSTPVAPLLLKTNKPVYLKADFNGAQLQFYYATEKNCWIKFGPVLDGSILSDDYVQQSPQGYRPCFTGAFVGMACQDLSGQNKEAHYSFFNYDEPSGE
>NZ_CP012737.1|WP_096793253.1|2234191_2235148_-|Gfo/Idh/MocA-family-oxidoreductase
MKKINWGIVGCGRIAAQFCEDLAHTNNGVAYAVAARNGDDATAFASKYGAANAYEGYQALFDDKNVDVVYIATPHNFHFKNASDAIKAGKHVLCEKPITVSAEECKQLCLLAKKHDVFLMEAMWTYFLPAIQKAKQWVEQGRIGTIKHVKADFGYPVPFNPDGREYNPDLAGGCLLDMGIYPLAIANYFLNNDLENLHVRANIRYKGVEDDVLITANCGDVMVSLATSFQCRLGNGAYIIGDKGYIKIPDAFRAYECSLYELDDLIEHFEDGRQSQGYSFEAQEVGRLLSENKRESDIMSHSQSLLLQSQMERIKALF

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Crispr_ID: NZ_CP012737_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012737_4

2957762-2958108

Orphan

Consensus_repeat	Method
TAAAATCGCACCTACCGCTTGGGTATATATAATTTTGTAGGTGAGGTTTTATACCTCGCT	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP012737_4

>merge|NZ_CP012737|4|2957762-2958108|PILER-CR
TAAAATCGCACCTACCGCTTGGGTATATATAATTTTGTAGGTGAGGTTTTATACCTCGCTGTTTAAAATTCAAGCGACAATGCACAAGTGCGAAATAAATTCGCACCTACCGCTTGGGTATATATAATTTGTAGGTGAGGTTTTATACCTCGCTTTTACATATTAAAAACACGCGTTACATGTGCGCGATGTAAAATCGCACCTACCGCTTGGGTATATATAATTTTGTAGGTGAGGTTTTATACCTCGCTGTTTAAACATTTAAGCGATAATGCACAAAGCGCGAAATAAATTCGCACCTACCGCTTGGGTATATATAATTTGTAGGTGAGGTTTTATACCTCGCT

>NZ_CP012737|4|1|2957762-2958108|PILER-CR
TAAAATCGCACCTACCGCTTGGGTATATATAATTTTGTAGGTGAGGTTTTATACCTCGCT	GTTTAAAATTCAAGCGACAATGCACAAGTGCGAAA
TAAATTCGCACCTACCGCTTGGGTATATATAATTTGTAGGTGAGGTTTTATACCTCGCTT	TTACATATTAAAAACACGCGTTACATGTGCGCGATGT
AAAATCGCACCTACCGCTTGGGTATATATAATTTTGTAGGTGAGGTTTTATACCTCGCTG	TTTAAACATTTAAGCGATAATGCACAAAGCGCGAAAT
AAATTCGCACCTACCGCTTGGGTATATATAATTTGTAGGTGAGGTTTTATACCTCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012737.1\|WP_096793603.1\|2963616_2964720_-\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NZ_CP012737.1\|WP_096793599.1\|2954531_2955083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793597.1\|2949228_2950419_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793602.1\|2961009_2963487_+\|PilZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|377796
NZ_CP012737.1\|WP_007377800.1\|2952962_2954114_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP012737.1\|WP_007377804.1\|2956416_2957646_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP012737.1\|WP_096793604.1\|2964835_2965864_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|182988
NZ_CP012737.1\|WP_096793596.1\|2948425_2949232_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793605.1\|2966014_2966635_+\|smp-protein	unknown	unknown	gnl\|CDD\|226249
NZ_CP012737.1\|WP_002958979.1\|2955753_2956407_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_CP012737.1\|WP_096793607.1\|2967390_2968029_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NZ_CP012737.1\|WP_096793609.1\|2970165_2971755_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP012737.1\|WP_008137434.1\|2959268_2960654_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP012737.1\|WP_096793594.1\|2946827_2947634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793608.1\|2968363_2970106_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223097
NZ_CP012737.1\|WP_096793600.1\|2955103_2955700_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NZ_CP012737.1\|WP_096793601.1\|2958248_2959181_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793598.1\|2950666_2952658_-\|transketolase	unknown	unknown	gnl\|CDD\|183723
NZ_CP012737.1\|WP_096793595.1\|2947626_2948433_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096793606.1\|2966601_2967369_-\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|223162

Protein	Function_ID	Function_description	E-value
NZ_CP012737.1\|WP_096793603.1\|2963616_2964720_-\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	2.47625e-30
NZ_CP012737.1\|WP_096793602.1\|2961009_2963487_+\|PilZ-domain-containing-protein	gnl\|CDD\|377796	pfam07238, PilZ, PilZ domain. PilZ is a c-di-GMP binding domain which is found C terminal to pfam07317. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This domain forms a beta barrel structure.	4.58725e-07
NZ_CP012737.1\|WP_007377800.1\|2952962_2954114_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP012737.1\|WP_007377804.1\|2956416_2957646_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP012737.1\|WP_002958979.1\|2955753_2956407_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	2.06071e-132
NZ_CP012737.1\|WP_096793604.1\|2964835_2965864_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	3.62909e-95
NZ_CP012737.1\|WP_096793607.1\|2967390_2968029_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	1.10334e-121
NZ_CP012737.1\|WP_096793605.1\|2966014_2966635_+\|smp-protein	gnl\|CDD\|226249	COG3726, AhpA, Uncharacterized membrane protein affecting hemolysin expression [General function prediction only].	1.19631e-11
NZ_CP012737.1\|WP_096793609.1\|2970165_2971755_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP012737.1\|WP_096793608.1\|2968363_2970106_-\|arginine--tRNA-ligase	gnl\|CDD\|223097	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	0
NZ_CP012737.1\|WP_096793600.1\|2955103_2955700_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	2.46267e-62
NZ_CP012737.1\|WP_008137434.1\|2959268_2960654_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP012737.1\|WP_096793598.1\|2950666_2952658_-\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NZ_CP012737.1\|WP_096793606.1\|2966601_2967369_-\|TatD-family-hydrolase	gnl\|CDD\|223162	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair].	4.02461e-82

>NZ_CP012737.1|WP_007377804.1|2956416_2957646_+|phosphoglycerate-dehydrogenase
MSKVSLAKDKIKILLLEGVHQSAVETLKRNGYSNIDYVKTSLPEDELKERIKDVHFVGLRSRTHISEAVLDAAEKLVAVGCFCIGTNQVDLDSARERGIAVFNAPFSNTRSVAELVLGEILLLLRGIPERNAAAHRGGWLKTANGSFEARGKTLGIIGYGHIGTQLGIMAENIGMNVEFYDIEDKLSLGNAKQVHNLTQLLQRSDIISLHVPETPQTKNLIGTAELAVMKQGSILINASRGTVVDIDALAEALTEKKLSGAAIDVFPTEPKSNDEEFVSPLRQFDNVILTPHIGGSTQEAQENIGIEVAGKLAKYSDNGSTITAVNFPEVSLPELANRSRLLHVHHNRPGVLTQINQAFAQHGINIAAQYLQTDSAIGYVVIDVDTDHSEVALKELSAVEGTIRARILH
>NZ_CP012737.1|WP_002958979.1|2955753_2956407_+|ribose-5-phosphate-isomerase-RpiA
MTQDELKKAAAWAALEFVKENTIVGVGTGSTVNHFIDALGSVKDTIVGAVSSSEASTARLEALGIEVFELNNVDALDVYVDGADEINAQNEMIKGGGAALTREKIVAAVAKQFVCIVDDTKLVDTLGDFPLPVEVIPMARSYVARELLKLGGDPVYRQGVVTDNGNVILDVFNLKITNAKQLETQINSIVGVVTNGLFAMRGADKVIIGTKNGPQIK
>NZ_CP012737.1|WP_096793600.1|2955103_2955700_+|5-formyltetrahydrofolate-cyclo-ligase
MNNNRAQIRKSIREIRNNLSKNQQNLAAQSLYMNFIQHLKSENTTNSKHIAIYLSNDGELDTSLLIKELWNLNHVVYLPIIHPFNGANLLFQRYEKNSPMRANRYGILEPKLNCSQICPLPALDYLLMPLVAFDKQGNRLGMGGGFYDRTLARLHEQNWQKPQLIGLAHECQLVDALPIESWDVPLKTIITPDKTYCW
>NZ_CP012737.1|WP_096793599.1|2954531_2955083_+|hypothetical-protein
MADNFRVIFAGLADGVDSNAASINLADKLKTSEEKVALFFKGKPLFAPSHKDKALKQAKLLASLGIKSKLQAVSNAANTPTEQPQNSQRDERIFDALDYITSSLIRLEEKLEELEQRLPEEQSKNPEIDEDDDWQDDDLLLDEESVSTPKKRSNVLLYSLIATAVTLLIILAVYLAFPSLFSL
>NZ_CP012737.1|WP_007377800.1|2952962_2954114_+|methionine-adenosyltransferase
MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDSHARVACETYVKTGMVMVGGEITTSAWVDIEEITRKTIRDIGYTNSDMGFDADSCAILNTIGKQSPDINQGVDRTSPEEQGAGDQGLMFGYACNETEVLMPAPITYSHRLVQRQAQVRKSGELNWLRPDAKSQVTFAYENGKPVGIDAVVLSTQHSEDISQKDLVEAVMETIIKPVLPAELITSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADKCELQVSYAIGVAEPTSISVETFGTSKLEESRLIELIREHFDLRPYGLIQMLDLERPIYLPTAAYGHFGRDEFPWERTDKAEALRAAAGL
>NZ_CP012737.1|WP_096793598.1|2950666_2952658_-|transketolase
MPSRKELANAIRVLSMDAVQKAKSGHPGAPMGMADIAEVLWRDYLKHNPTNPEWADRDRFILSNGHGSMLIYSLLHLSGYDLPLDEIKNFRQMHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMAIAEKALAAQFNREGHDIVDHFTYAFMGDGCLMEGISHEAGSLAGTLGLGKLVAFWDDNGISIDGEVEGWFTDDTPARFKAYGWHVISGVDGHDSDAVSAAIAEAKSVTDKPSLICCKTIIGYGSPNKSGSHDCHGAPLGDDEIKASREFLGWTGDAFEIPDDIYAKWDSKEKGQQLESSWDEKFAAYAKAYPELAAEYKRRINNELPGDWAEKSQAYIEQLQANPANPASRKASQNALNAFGPLLPEFMGGSADLAGSNLTIWDGSKGLTHDDASGNYIYYGVREFGMSAIMNGIALHKGFIPYGATFLMFVEYAKNAVRMAALMKQPSIFVYTHDSIGLGEDGPTHQPVEQIASMRLTPNLYNWRPCDQVESAIAWQQAIERKDGPTSLIFTRQGLEQQARDAQQLADVKKGGYILSCDGNPEIIFIATGSEVQLAQDSATELRSQGKKVRVVSMPCTDAFEDQSAAYKESVLPASVSRRVAVEAGIADYWYKYVGLNGAVVGMTTFGESAPANELFEHFGFKVANIVSKANELF
>NZ_CP012737.1|WP_096793597.1|2949228_2950419_-|hypothetical-protein
MSWSKLNKTINAHSVIPLDALSCRDFGVKLPINFPFSKAKFTCQALAMLSQLNDYDLKMVCADIIQICANPNANNSIKHSRNPLRRLWRTKYPFRNYHFLIEYSLKNNFINLEDILFDRQLQGAKSNFAAERTMLYEVKRRSNHTYDRAMGEEEIEEVKGAWGNVPTATTQVNTQHAAVNGMQNELTKATWLMGTHLDRAYEGDGIKAYTLFHNPTDRPKLDLVECAFDKRLGTKSHNAQHLAAVLAQNNQQGKQVKWLAHSQGAIIFCAALEHYRIYYGKSLTGQQLAVHGSGSNIERLKRIAHSTGLKVVAVRNNPYDLVPNLAGRNDLSSSSLVRSMKFKGLVTGDDAAASPHTLPFLGLVTYADQLQMLGYNDKADVVRNFIKTLPHTDARL
>NZ_CP012737.1|WP_096793596.1|2948425_2949232_-|hypothetical-protein
MIKLAKAFYRGFVGGPNFENCVHHRLILEDKLLTIDVPNSNVAAVQKPMDISFPYNSKVWFNQHKKNYLYHEYVHMLTKNWMYLPPVSYLPSNEYGMLSCQLRIKQTQKINVQDFEQLKHFVIESYDNFHWGPDGDNTKIKNDTTLESSKRANPWVGEALKEEISGRIEVYGQPPLPAAKEIIINNRQWVFYKECRGNVLSRHDFYCLPLSEHAFLEIKFNHRVDRSDKHKKWAKHALESQQRIMESIKLTELPPDHDNLITDNSKSV
>NZ_CP012737.1|WP_096793595.1|2947626_2948433_-|hypothetical-protein
MFNLAKAFYRGFIGGPNFENCVHHRLILEDRLLTLDVPDSNVAAVSSTIDISFPYNSTSWFNQHKKNYLHHEYVHMLTENWMYLPPVSYLPSSEYGMLSCQLRIKQTNKINVLDISQLKHFVIDEYDDFHWAPDGKNTKIKNDTTLESSKRANPWQGEALKEEIIGRIESYGKPPLPAAKEVMINNRQWVFYQVKKSNRRSRHDFYCLPLSEHAFLEIKFNHRVDRSDKHKKWTKHALESQQRIMESIKLSDLPPDHDNLIADNSKSV
>NZ_CP012737.1|WP_096793594.1|2946827_2947634_-|hypothetical-protein
MFNLAKAFYRGFIGGPSFDNCIHHRLILEDKLLTLDIPDSNVAAVPSTIDVSFPYNSKTWFNQHKKNYLHHEYVHMLTENWMYLPPINTFLSREFGMFSCQLRIKQTNEVNVLDINQLKHFVIESYDNFHWGPDGRNTEVKNDTTLESSKRANPWQGEALKKEILERVEIYGYPPLPAAQETIINNRQWVFYQIKKSNRRSCYDFYCLPLSDHAFLEVKFNHHVELPYKHKKWAKHALESQQRIMESIKLSDLPPDHDNLIADNSKSV
>NZ_CP012737.1|WP_096793601.1|2958248_2959181_-|hypothetical-protein
MKKLVIVAAIVAAGVGGVSYANYVATQEVRAEVDKQLALVSEQTGAIFKYAGLSASVISKSVEITNMEVISPEGDNVAKIQSIEITGYDPDNISPHTSFDVKSFQFDKDFAAKLPAGTNEMLASASYDLHSSLDYDEQSGNSDVVVKLDAKDIVSFNMDMGLANSKALMDASLAISKAQQEAGNQPLTYEQELQQQTLVMQAMSKLEPRNVSFALNNQGKLKDLLSSELEKQGMTLEKMELMLQQQLQQAPVTQDIAEALTSFAKGLNSFSVSAKLPEGKTMMEVNQHIMMLVGQPEELVKFINLEVKGD
>NZ_CP012737.1|WP_008137434.1|2959268_2960654_-|DNA-repair-protein-RadA
MAKAAKVEFVCTECGMNYQRWQGQCRCGAWNTLAEFKPSAGHSKKAAVRASVGGYAGGIGGGSKKINDITTTEAEKQLTEIGELDRVLSGGVTTGSVNIISGDPGAGKTTLLSDLVARMSQRMPSLYCTAEESLSQFKNRVNRLKLNYNPDELYLLSETSVETIIDELEKNKIKFAVIDSIQAVVTDTANGSPGSPSQVKSAAQALTQYCKQNDVTMFIIAHVNKNNEIAGPQTLVHIVDALLHIDTNDGQIRTLRANKNRFGDIDTVGIFKMCERGMLSVDNPSEIFLSGSTTDSPGSTITCIRKGNRNLLLEIQCLTTETEAEFPQRVCVGLNMNRIKMLTGILRKHTKTKIFHDTFFNIVGGLRIDESETCIDLALVTALLSSLNEFVVPRTTCIMGELSLNGDVRPIDSGVPRVKEAAQHGFTEIFIPFRNYHKSMEGLGAKITPVKTVHELLSLIN
>NZ_CP012737.1|WP_096793602.1|2961009_2963487_+|PilZ-domain-containing-protein
MADDIMLKHEDLVNELKQYLGNTKFDMIFKSKTAELTKPEQFLMKMEMSRLSQPVARFVDLRGLVTGHVKPYEHNGKQHFMDDTAIEVFEKALEQHGEYTLAVYEAVMNTENNHRVLQKKAIEKAELPELDDSLDTDVIKFASYESRREERMNYSIKVTITYDDKKNIAASTSDISLSGCKVKLVTRHILKKGQLIAMRLVGLEQDFELGLKNGIQYEVVAVENISREYNHIRLKRTYVENNEAFDRFLKSFIHGNKRRYKVNLDNTLDAVVSKGYEQYYIPRVTSLYVFLSKKDDHYYPSLSLTTENNIFIQRYFTDERAIPCLYNVLNHQRITQLLTQTTAVKEDYLYTFTHVSSGKIYYYSATRSELEKTPELSSLFLSFGSQKESWQCFKLQIMPTHPDDSYIPLSLPNSAGENIEKLNKPPSPRVEGLVKDVKYIVVLTSIGNAVEQEQYKKLNYDKALVNQLKHFGHAKHQTPPYLDIVALEYVNLRSHKRYLYKTAAKVTLGDITFSGYTRDFSVMGLQLECEQPITFKKGDIILLSFPDLQKITKKHQLSELKYEVMAIGKSFTTINLKASRVSDFPHAGVTFFTQLIENNKDKLKVSEEAPKVEGLSTALRNMVTKSVCQFPLYLHKEAAHFKTGAIGFGLYASPLHVILQNFGLLSNKTDLSSILTDEQIINVISPHIKDRSRQDPPLAFTIAINFDPRKGDIKEAITSQCVLGEDYSGFEKQISQGIKSDLIFVMRLYLSRTGRPDTDYLSNELKYVSQYAMHKAKDLEKALWSVAGVGDVVDITEEALSHLDLNQQQIEQMGRRKLIWLNRLR
>NZ_CP012737.1|WP_096793603.1|2963616_2964720_-|ISAs1-family-transposase
MSFINHFNDIQDTRSHINKKHELLDVIFLTVTAIISGAEGWKDIKQFGDSKLTWLRKFRSFENGIPVDDTIARIISSLAPEALLACFVSWVNELRDANNQSVIAFDGKTLRHSYDGDKKTAIHSVSAYAVEQGLVLAQCKSKSKKNEVSTVMALIELLELKGNIITADAMHCLKKVTKAVSKKDGDYLLQVKNNQGKLNKEIQAYYHKVRREQPSLIQQNSHETVNDGHGRIEQRTYTQLLVTDWLEQRHGWVNFNSIVEVVRQRYVGDSHTMETSYYISSLGINPEQVAKSIRQHWGIENSAHWVLDMTFKEDDSRIRRGDAPENMATFRRFAMNLAKLSAIKDSMKGKLKQAAWSDEVREQLILG
>NZ_CP012737.1|WP_096793604.1|2964835_2965864_-|phosphoserine-phosphatase-SerB
MSKTSMAQPNAEQSLSTLTLNQWFSYQDTTFLPLNGTPNRQRGLFSIAFAGDFNSEKIQLIAEFLAKHNQGVTALCQYQPDLELAPALCFYSQDANQAINPLVLQALSKTLECQLVQVNTPPNLYEPGLLVMDMDSTAITIECIDEIARLANVYDDVASVTALAMAGKLDFSESLNQRVAKLEGIEKSLIEELKYSLPLMPGIKALCQILKQHNWYLAIASGGFVPFAERVQELISLDEVHANTLEFKNNKLTGKVLGKIVDAQQKAVVLESLQQKLGLIKTQTVAIGDGANDLVMMAKAGLGVAVHGKAKVVEQAQAAICQGSLLQLLYMLAIPLNEEPKI
>NZ_CP012737.1|WP_096793605.1|2966014_2966635_+|smp-protein
MKNNHLKNPISASQKKRLVRLFLAAACFVLLSWVGVNSSFQSHQLLYDSADSTAKSLTQFMALNVKTPLIEKNKPQLNAICNDISKDEFVLSATIYDQQGILIASSDNWQSHHIFGQLPDSTPGISKLKTPFVEPVVSDDDRPLGFVSVTYLTRSAIAQSHSHFHDLGRQVLLMLVIACIFTWQLGRGLKSWQVSRYIRKTSEQES
>NZ_CP012737.1|WP_096793606.1|2966601_2967369_-|TatD-family-hydrolase
MQFIDSHCHLDFSEFDSNRESLINECVAKGVNQFIVPGITLAQSRTLIKLKATYPSIKIAAGLHPYFLDQHQESHIEALYEFATANKHQLVAIGECGLDRSIENLAKQTFLFEQQIELSNKLNLPIIIHHRQSHDLIAQSFKRCKPKNGGVIHAFSGSIQQAQYYIKQGFKLGVGGVITYERAVKTRAVIAAIEPENLVLETDSPSMPLSGYQGEVNTPLHIPDVFNALCDLKSLSKRDTLAKCLYDSCSDVFRI
>NZ_CP012737.1|WP_096793607.1|2967390_2968029_-|pyridoxamine-5'-phosphate-oxidase
MKLEDIRREYLQDALSEDNLQDDPFKQFETWLEHAVASKLPDPTAMVVATVDETGQPSQRIVLLKHLDDNGFVFFTNTGSRKAQELKGNNKISLHFPWHHMERQVIVYGEAKPLPTSAVAKYFLSRPKESQLAAWASAQSRPVSSRKVLMETFANMKNKFAKGEIPLPDFWGGYCVVPTKIEFWQGGAHRLHDRFMYQRQADNSWQITRLNP
>NZ_CP012737.1|WP_096793608.1|2968363_2970106_-|arginine--tRNA-ligase
MNIRTILIEKAVAAMVGAGLPEDTNPAVTQSTRPQFGDYQINAAMGAAKKMKSNPRELAQKIIDNLDVSDIAQKTEIAGPGFINIHLKPEFLAQSVQAANSDAKLAVNEHANPQKVVVDYSSPNLAKEMHVGHLRSTIIGDSIVRALEFRGDTVVRQNHMGDWGTQFGMLIAHLEDQISQGVDLDSVALADLETFYRDAKKRFDDEEGFADKARDYVVKLQGGDAHCEKLWKLFIATSVKHSEEVYKRLNVTLTQADIMAESAYNAELNDIISLLKDKNIAVESQGAQVVFLEELANKDGEPSAFIVQKSGGGFLYATTDLAACDYRSNKLGADRILIFVDARQNLHFNQVELTARKAGLLRDETSYEFCPFGTMMGADNKPFKTRTGGTVKLADLLEESINRAETKLAERESDLSDSERSEIARKVGIGAVKYADLSKHRTSDYIFNWDSMLSFEGATAPYLQYAYTRIRSIFRKSGVDAATLNSDVTIVEPQEKALALKLLQLEEVLDLMISEATPHVLCGYLYELASLYMTFYEACPVLKEGVEPNVRDSRLVLCNLVSKTLETGLDLLGIEVMEQM
>NZ_CP012737.1|WP_096793609.1|2970165_2971755_-|peptide-chain-release-factor-3
MADQNLLSEINKRRTFAIISHPDAGKTTITEKVLLFGQAIQRAGTVKGRGSNQHAKSDWMEMEKERGISVTTSVMQFPYNNALVNLLDTPGHEDFSEDTYRTLTAVDSCLMVIDAAKGVEDRTRKLMEVTRLRTTPIVTFMNKCDRDIRDPMEVLDEVETELNIACAPITWPIGCGKEFKGVYHIHNDEAVLYKTGQGHKIQEVRTIKGLDNPELDIAIGEDLAAQLRDELELVIGASNEFDLDLFLAGELSPVYYGTALGNFGVDHVLDGLTKWAPTPLPRETEDRLIVATEENFTGFVFKIQANMDPKHRDRIAFMRIVSGKYSQGMKMNHVRIGKQVSISDAVTFMAGDRERAEDAYAGDIIGLHNHGTIQIGDTFTQGEKLKFSGIPNFAPELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLINNDLIVGAVGVLQFDVVVARLKAEYNVDAIYEGVNVNTARWVSSDDVKKFEDFKRKCESNLALDGGDNLTYIAPSRVNLNLSVERYPEVTFSHTREN

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Crispr_ID: NZ_CP012737_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP012737_5

3921541-3921666

Orphan

Consensus_repeat	Method
TTTCATTTTAAGAGATCCTGAATTTTATCCCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP012737_5

>merge|NZ_CP012737|5|3921541-3921666|CRISPRCasFinder
TTTCATTTTAAGAGATCCTGAATTTTATCCCAAATTTTCCCTATAACTGACTTTCCGCCATTTACTTCTTCTAATTGCACTGTATTTAGTTCTTTCATTTTAAGAGTTCCTGAATTTTATCCCAAA

>NZ_CP012737|5|4|3921541-3921666|CRISPRCasFinder
TTTCATTTTAAGAGATCCTGAATTTTATCCCAAA	TTTTCCCTATAACTGACTTTCCGCCATTTACTTCTTCTAATTGCACTGTATTTAGTTC
TTTCATTTTAAGAGTTCCTGAATTTTATCCCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP012737.1\|WP_096794040.1\|3914360_3915719_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	unknown	unknown	gnl\|CDD\|181867
NZ_CP012737.1\|WP_096794042.1\|3918336_3918519_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_157770559.1\|3917811_3917982_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_157770561.1\|3920009_3920183_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096794044.1\|3919079_3919997_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275040
NZ_CP012737.1\|WP_096794039.1\|3911000_3914144_+\|lantibiotic-dehydratase	unknown	unknown	gnl\|CDD\|377403
NZ_CP012737.1\|WP_096794038.1\|3909763_3910981_+\|lanthionine-synthetase-C-family-protein	unknown	unknown	gnl\|CDD\|271201
NZ_CP012737.1\|WP_096794051.1\|3932280_3934404_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
NZ_CP012737.1\|WP_096794050.1\|3930845_3931040_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096794046.1\|3926409_3927654_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP012737.1\|WP_157770560.1\|3917992_3918136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_157770562.1\|3930336_3930681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_157770564.1\|3928378_3928486_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096794047.1\|3927656_3927998_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_096794043.1\|3918633_3918822_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP012737.1\|WP_007377665.1\|3935004_3936390_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP012737.1\|WP_007377666.1\|3934568_3934991_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP012737.1\|WP_096794041.1\|3916624_3917665_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP012737.1\|WP_096794045.1\|3924196_3926410_-\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NZ_CP012737.1\|WP_096794048.1\|3928892_3929935_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234

Protein	Function_ID	Function_description	E-value
NZ_CP012737.1\|WP_096794040.1\|3914360_3915719_+\|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase	gnl\|CDD\|181867	PRK09451, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_CP012737.1\|WP_096794038.1\|3909763_3910981_+\|lanthionine-synthetase-C-family-protein	gnl\|CDD\|271201	cd04793, LanC, Cyclases involved in the biosynthesis of lantibiotics. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. Also contains SpaC (the cyclase involved in the biosynthesis of subtilin), NisC, and homologs.	9.42643e-56
NZ_CP012737.1\|WP_096794048.1\|3928892_3929935_+\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.95054e-33
NZ_CP012737.1\|WP_007377665.1\|3935004_3936390_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP012737.1\|WP_096794044.1\|3919079_3919997_-\|hypothetical-protein	gnl\|CDD\|275040	TIGR04187, conserved_hypothetical_protein, ATP-grasp ribosomal peptide maturase, SAV_5884 family. Members of this protein family are ATP-grasp ligase family enzymes that regularly occur in a contexts with a methyltransferase and a putative ribosomally translated post-translationally modified peptide precursor. Because of this conserved gene neighborhood and close sequence similarity to ATP-grasp enzymes from microviridin/marinostatin biosynthesis cassettes, this enzyme is suggested also to serve as a peptide maturase.	1.29821e-23
NZ_CP012737.1\|WP_096794039.1\|3911000_3914144_+\|lantibiotic-dehydratase	gnl\|CDD\|377403	pfam04738, Lant_dehydr_N, Lantibiotic dehydratase, C-terminus. Lantibiotics are ribosomally synthesized antimicrobial agents derived from ribosomally synthesized peptides. They are produced by bacteria of the Firmicutes phylum, and include mutacin, subtilin, and nisin. Lantibiotic peptides contain thioether bridges termed lanthionines that are thought to be generated by dehydration of serine and threonine residues followed by addition of cysteine residues. This family constitutes the N-terminus of the enzyme proposed to catalyze the dehydration step, via glutamylation of the substrate during lantibiotic biosynthesis. The enzyme dehydrates Ser/Thr residues in the precursor by glutamylation.	3.02649e-128
NZ_CP012737.1\|WP_096794041.1\|3916624_3917665_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.85494e-21
NZ_CP012737.1\|WP_096794051.1\|3932280_3934404_-\|transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	4.22149e-16
NZ_CP012737.1\|WP_096794046.1\|3926409_3927654_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	2.30155e-36
NZ_CP012737.1\|WP_096794045.1\|3924196_3926410_-\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
NZ_CP012737.1\|WP_007377666.1\|3934568_3934991_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	6.52219e-60

>NZ_CP012737.1|WP_157770561.1|3920009_3920183_-|hypothetical-protein
MAKYFQSEYELERFLDKQIAADCIDSYLDSDGVISNSCQIFNIAESDISNLDYYTLN
>NZ_CP012737.1|WP_096794044.1|3919079_3919997_-|hypothetical-protein
MAYIVIGQSHDEHAQQILEKLKMRGVEAYLLQTHDFPKKIKFSFSPNDGNGSLTLRCGTLINLSDIKAVFWRSFSGVSDEETRATYMTEQGIAAKDSMACLRTWFYLDNGTKWVNGWEAFQHHQEKPYQLQKIKNLGVKIPQTYVGNNIEDIKFAYKNLEQSIFKPVFGGAHTEMLTESHLETERVEAALAKSPITVQEFIAGTNIRTYVVGKRVISIELKSDMADFREDDDAKLIVIDTPELIKSQAKHIAEELYLNWTAIDWRRNESGEYYFLEANPSPMFIGFEKQSGIPMSDYIVDYMLEH
>NZ_CP012737.1|WP_096794043.1|3918633_3918822_-|hypothetical-protein
MHPFSLEKTQEEQVVGGVVASKVTYFGGCTEDGGGINPTDPITMAIPEDGNDPRPFPPEEWM
>NZ_CP012737.1|WP_096794042.1|3918336_3918519_-|hypothetical-protein
MHPFSLEKSQEEQVVGGKGDVNFTLSLKEDGGPGVPGGPITMAIPEDGNDPRPFPPEEWM
>NZ_CP012737.1|WP_157770560.1|3917992_3918136_-|hypothetical-protein
MKLNKRKLKQLQEFNVIDIKMTDKVVGGFCPPTVITCSPETINKLEM
>NZ_CP012737.1|WP_157770559.1|3917811_3917982_-|hypothetical-protein
MNIKMNKKAIKNLSQQGRSANVATKEVAGGARYPVEQPTGNMFTLNSCGIVCISEM
>NZ_CP012737.1|WP_096794041.1|3916624_3917665_-|IS481-family-transposase
MLHTNNPIIKHKAGLLNLAEELGNVSRACKVMGVSRDTFYRYQELVNEGGIDALIEKNRRTPNIKNRVDEETEQAVINYAVDYPAHGQHRTSNELRKLGVFVSGSGVRSIWLRHDLENFKKRLKALENKVVNEGIILSDAQVAALEKKKHDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFVDTYSKVAFAKLYTTKTPIIAADMLNDKVLPYFEGHKLPMLRILTDRGTEYCGRVEHHDYQLYLAINDIDHTKTKAMSPQTNGICERFHKTILNEFYQITFRKKLYDSMEELQKDLDEWMDYYNNDRTHQGKVCCGRTPLETLLDGKTVWAEKNLAQI
>NZ_CP012737.1|WP_096794040.1|3914360_3915719_+|UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase
MALTTVILAAGKGTRMRSALPKVLHKVAGKPMVQHVIDNVMALGATTTNLVYGHGGELLQQQLADNDVNWVLQAEQLGTGHAVAQANSHINDEDTVLILYGDVPLTKQSTLERLLAATPKNGLAVLTVNLVNPNGYGRMLRAGGKLVGIVEQKDASSEQLLINEVNTGIMAVNGKLLKTWLGNLSNNNAQGEYYLTDIVAMAHSEGVEITSAQPDHAMEVEGANNRVQLAGLERAYQAWQAQELMLNGATLADPARIDVRGTVTTGEDVLIDINVIFEGNVTLGSNVQIGPNCVLKNCTIGDNVIIKANTLIEDATVADKCTLGPYARLRPGAVMEEDSHIGNFVEMKKTRLGKGSKANHLSYLGDAEIGEKVNIGAGTITCNYDGVNKSKTIIGDNAFIGSNSSLVAPVNIGATATIGAGSVITSTVEDDQLAIARSKQRNLTGWKRPVKK
>NZ_CP012737.1|WP_096794039.1|3911000_3914144_+|lantibiotic-dehydratase
MTNKIKNAPFFVVRAPRLSNEQLLQFNNANADTNKILESWLAMYGVQEALYLASPSLLERINLWREKPDTKQGKKVSHALIKYMIRMCSRATPFGLFSGVSKGEITSVTDLICGDYKKDSRKTRLDMFYLNELKDYFIKHTSKSDTLKYKPNPSHYFIAEQCRYIEAYLFDDSMQYRLSAVESDEYFKFALNLASTGISFNNLCKAFCEQYIDADKEDVESYIQDLIDEGILIADIPLPLTGDSPDYALLKSIQNLKENIYADHLATVLVKIDHLDEDNLGSIAPYKQLLTHLDKLPIKAQENKLFQADIYRNYSTCYLSEIEINRLQKQLELLSGLSLNERSNPLSPFINQFNARFEGQFVALDVILDDETGIGISNETGYEAPLVAGLHFARAGGIVNTPAGVSLIDAIIEEAISLPKNRNKNCIALKSKELKVKATNTDALKYYPSSFAAMLSLYEDDKHNPIIKFNGCYGPSSANLLGRFCHLDESLKNAVREELRLEQAHSPDVIFAEVVHMPEGRPGNVIARPHLREYEIVFMADSSLNDEYQIHLSDLYVWVEGHQVKLWSKRLNKQIVPRLSCAHNYSSRSLSAYKFLCMLQHQDGRVPQFSMPQSTTRDSFVPRIMLDNLVLSEKTWRIDRKYLQEVLIDGQLNMDKLNTLLATFQLDPQVCYAMFDNILQLDLRNSDMFEILLAETKGQTKVELKEVLSSSFSSRVKDEQGHHYNNEVIVPFRNTAAKVHKHFVGEPLANISAKPIKRRFSAGSEWLSLKIYSGNSLVEQLLCEKLLPLIESNKNLYNKWFFIRYSDPDWHIRVRFHGKPNILCGELLPLLNNLLDPMIESGELHKVELMTYEREVERYGGPESIALAESLFMYDSELITNACLLVDDHGEDIRWRIALNYTHKLLNLFNYTDDERLSLISRLRDGFGNEFNENSILRKQLGSRFREYQDQLNDDFIKLNTVDTDGLDETQKFIFKLLKEWQNNAEPIVKALVKLIKENKLNCTRDSLLGSLLHMHNNRIFKAYGREQEFLIHDLLRRKYFSTGKAK
>NZ_CP012737.1|WP_096794038.1|3909763_3910981_+|lanthionine-synthetase-C-family-protein
MIINGLVGNAQSDVMRGILKEITQKISEEIIKKESGNGLLNGLAGYILFLYNAGKFEDICVGDSLLNEKMELLQAQLAKQSLEFSSGLAGQAWLLEFLNQSNKADYDSELLESIDILFANSLSQNDVWLGEIETILGLAGYTPYTARRARFTDQTRLYSIIVRAFEQTATYFDNGNITWSQPYKSAYRFNQNDENLPEYNLGLAHGVPGIIAALVPVLYIPKLKARARKLLLGSCDWLLTNQNCNLSSNACFGSCAGDGGDSRLGWCYGDLTIALTLMRAGVALNMPHYVERALGIARHAAKRDEISGYVKDAGICHGYFGLIMIFSLLNKLSPHPDLQAAINYWLSFALEQYEDNGVSSFYSYKGDEGGYEEDFSLLMGYSGIGLVIISLLNGEFGWADSLLID
>NZ_CP012737.1|WP_096794045.1|3924196_3926410_-|peptidase-domain-containing-ABC-transporter
MENPMHLLRFSGVKRLPVILQTEAAECGLASIAMVAAYYGYKTDLTSLRQEHEISLKGANLEELMQIADKLKLSSRALRLDLDHLSQLKTPCILHWDMNHFVVLKKVTKKSIEIHDPGLGERKYTMEEFSKHFTGVALELSPTEEFKSEDSRVNLKLSDFWSKVTGLKSTLGKVFVLSLLLQAFAIASPYYMQLVVDEVILSYDQNLLAILAIGFGLLMGIEMVTGAVRSVLLLHFGNLMSIQLGANLFHHLIRLPLQYFEKRHIGDVVSRFGSLQQVKELLTKGVIEAVIDGVMAIATLIMIFLYSPKLSVIVLIAIAIYAVFRIAMYRPLRQMSEEVIVNQAKEQSNFMETVRGIQTIKLFGREVQRQSVWHNKYADSLNSGIRVGHLNIGYEAFNKIIFGLENVLVIYFAAMLVMEGDLTVGMLFAFMAYKRQFVEKMASLIEKIIEFKMLSLHFNRLADISLTEKEQNIQGKMSGKKISGNIELKGINYRYNKKEAPVFKHLDLSIKAGESVAIIGPSGCGKTTLAKLMLGLFEPDEGKIEVDGVDIRQLGLGQYRTQIAAVMQDDQLLSGSIADNISFFDPELDMQQVEWAAKIAAIDNDILQMTMGYNTLVGDMGAALSGGQIQRLLLARALYRKPKILFMDEATSNLDTKLEFSVNEAVKNLDVTRIIIAHRPETIASADRVIELRYGEAIEVDKPDLGSRTKAIKKINSLNIENEEFIDTSSDGSFLIS
>NZ_CP012737.1|WP_096794046.1|3926409_3927654_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MSDLFRKEAIDHQGQKLDGEVTIATHMSFKWILGLILGIVVVGFTYLVLGEYHRKEVVSGYLRPTTGLSKVYPLTTGVIDEIFVEEGDHVAKGQLLARIRIERLLASGNDINDVIVSELTKQKQFLNENLQNQKLLAEVSLEKLESQIASTTFQVEQAQKQLTLLEKRVVLSKKRVADTESLIEKQFASNADLETVKDNYFAIQQQAEDLEARLLTQKELLSQYQFELIQMPMNQQEIESQLRSQLANINQQISQAESQGSYDVRSQRSGRISNLLVKPGMMAQSNYPLMAVLPEDTKLEAVLFVPTRAYGFVQKGQGTRIRYQAFPYQRFGIYDGVIKSVSKSILLPNETALPVSLQEPMYQVVVELTNQNAQAYGASVPLQAGMLLEADIMVDSRSLFEWLFEPIYSIKGAV
>NZ_CP012737.1|WP_096794047.1|3927656_3927998_-|hypothetical-protein
MTLNEYFSSYYALICDGSLDDLEDYFCSGSPLFNATKQQFETLRKQFDFKFTLQNVALIAKQDDLLVVRDVVNFKAEIDGKAIDKVSSNLHSLVKESGEWKLHCSTPLPEAMA
>NZ_CP012737.1|WP_157770564.1|3928378_3928486_+|hypothetical-protein
MLIIKERGYSTVKAAKPLRVTNNSLYRWKYKAITK
>NZ_CP012737.1|WP_096794048.1|3928892_3929935_+|IS3-family-transposase
MKKAHFTDSQILAILKQAENGVPIPELCREHGMGNSTFYKWRAKYGGMDAPLMTRMKELEDENRRLKKMYAEERLKSEVIQEAMGKKVVKASERKVLAHEVVSTNKMSIVLACRTFMISETCQRNWGFGLCFLYLRNVKGYTWNHKRVYRIYRELELNLRIKPRKRLTREKPEPLAVPEAINECWSMDFMHDQLSDGRGCRLFNVIDDFNREGLTIDADLSLPAERVIRSLNQIIEWRGKPKAIRCDNGPEYISHKLAEWALNNNIELRFIQPGNPQQNAYVERFNRTVRYDWLSHYIYSDISELQDKATDWLWTYNNQRPNMGIGGITPIQKLEKLNNGNSTDSLH
>NZ_CP012737.1|WP_157770562.1|3930336_3930681_-|hypothetical-protein
MAYDNYESKKYVYSTLKGNVIYGSRLEKGDFFYKGELLFKIKNEEFYGVLSLSDKDLDSITSIKRGSYLCSDAYDFRFKVVKVENLSVLVSIKFLDENSGMKNKGVNEAFYSCN
>NZ_CP012737.1|WP_096794050.1|3930845_3931040_-|hypothetical-protein
MKIVLKKKNLKVLKSKELNAGNLIALDQTKMINGATGITIVRPTMTDSPVDMLSSVSRLSDLIK
>NZ_CP012737.1|WP_096794051.1|3932280_3934404_-|transcriptional-regulator
MKEVNFPRSVKEIKFGAWSLNPKLQIISDGEVERELEPLLFKILCYLIINKDEIITRQDLVDDVWCQHYVDDNAINRAMSELRKVLKSEIQRGLVVKTHYRKGYSFFLEPEVIYYEDESLALGQVSALKETPNKKQKKLIVLIAMLILGFFSSIFMLQSILNQNGNKQKDTLSKVETKSSKIVEKKFNEETLSWLQGVYSRMILSPDSSTVALSFLEEDQSYSALLLKNLNTGQERKISEVNANIFPAGWSIDSERAIYSLETEGKCELWEVGLTGNADSKFLFECEPSHQVNALSLANNSYIYSKYGYRKRSELSALVNRNLSTGDEFQISSPNLNSYGDKLLYFIKSKNKIIFERHQFNSSELYMTDLEGGAQIKLYETKSRIWSINYQNETDSLLWYDNKEEIFYEYSLRNNRLESKTKVDSESVYSVTYPIDNKNILGLTYPFSHNIYRFDLTSKNFERVSKLESGFANIVGENVVFLSRDGGLIKLNTVFKDGKVTSKKVNLRYKDFKISSDSQEALGINKNEIEILRYEDLSVKDVITPKGNLISVNYLQENNIGYIVQGEITTNSTAYIFNRSNSNSILLPVKNAVWFGQLLDNKLVFLNNLDMLIFFDLSTGEQTKGFKVKQSAYKHSLSISQNKLYHSTGKAVYEYDFSEGIKVIPKKVYEVNKTEELILNVNSSSTVNTLSLEVSELVNNELVRLSL
>NZ_CP012737.1|WP_007377666.1|3934568_3934991_-|F0F1-ATP-synthase-subunit-epsilon
MTAMTVHLDVVSAEQSLFSGLVESIQVSGSEGELGVNLGHAPLLTALKPGMVRLVKQFGHEDVIYVAGGTLEVQPNHITILADTAVRGEDLDEDSVQKAKREAEEHMANSSAVEFDYQQAATRLAEAVAQLRVIQQLRHK
>NZ_CP012737.1|WP_007377665.1|3935004_3936390_-|F0F1-ATP-synthase-subunit-beta
MSLGKVVQIIGAVVDIEFPQDSVPAVYHALRVTDGDLAGLTLEVQQQLGGGVVRTIAMGTTDGLRRSALVMNTGESIQVPVGKATLGRIMNVLGEPIDEAGPIGEEDRMSIHRAAPSYEEQSSSVELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMNDSNVLDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERIASTKTGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSSSRQLDPQVIGQEHYDTARGVQTVLQRYKELKDIIAILGMDELSDEDKQLVSRARKIQRFLSQPFFVAEVFTGASGKYVSLKDTIAGFKGILNGEFDDMPEQAFYMVGSIEEAQEKAKGM

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP012737_1	1.1\|599049\|48\|NZ_CP012737\|CRISPRCasFinder	599049-599096	48	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	225374-225421	7	0.854
NZ_CP012737_1	1.1\|599049\|48\|NZ_CP012737\|CRISPRCasFinder	599049-599096	48	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	725557-725604	7	0.854
NZ_CP012737_1	1.1\|599049\|48\|NZ_CP012737\|CRISPRCasFinder	599049-599096	48	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	730234-730281	7	0.854
NZ_CP012737_1	1.1\|599049\|48\|NZ_CP012737\|CRISPRCasFinder	599049-599096	48	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	438966-439013	9	0.812
NZ_CP012737_1	1.1\|599049\|48\|NZ_CP012737\|CRISPRCasFinder	599049-599096	48	NZ_CP027525	Pseudoalteromonas carrageenovora strain KCTC 22325 plasmid pKCTC22325, complete sequence	129138-129185	9	0.812

1. spacer 1.1|599049|48|NZ_CP012737|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 7, identity: 0.854

cctgaactt---tgcttgagatagatttattatccaaagttcaggttactt	CRISPR spacer
---gaaaatagctgcttgagatagatttattatccagagttcaggttattt	Protospacer
   ***  *   ************************.***********.**

2. spacer 1.1|599049|48|NZ_CP012737|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 7, identity: 0.854

cctgaactt---tgcttgagatagatttattatccaaagttcaggttactt	CRISPR spacer
---gaaagtaactgcttgagatagatttattatccaaaattcaggctactt	Protospacer
   ***  *   **************************.******.*****

3. spacer 1.1|599049|48|NZ_CP012737|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 7, identity: 0.854

cctgaactt---tgcttgagatagatttattatccaaagttcaggttactt	CRISPR spacer
---gaaaatagctgcttgagatagatttattatccagagttcaggttattt	Protospacer
   ***  *   ************************.***********.**

4. spacer 1.1|599049|48|NZ_CP012737|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.812

cctgaactt---tgcttgagatagatttattatccaaagttcaggttactt	CRISPR spacer
---gaaaatagctgctagagatagatttattatccagagttcaggtttatt	Protospacer
   ***  *   **** *******************.**********  **

5. spacer 1.1|599049|48|NZ_CP012737|CRISPRCasFinder matches to NZ_CP027525 (Pseudoalteromonas carrageenovora strain KCTC 22325 plasmid pKCTC22325, complete sequence) position: , mismatch: 9, identity: 0.812

cctgaactt---tgcttgagatagatttattatccaaagttcaggttactt	CRISPR spacer
---gaaaataactgcttgagatagatttattatccagagttcaggttatga	Protospacer
   ***  *   ************************.***********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

429608 : 488760

uncultured_Mediterranean_phage(15.38%)

tRNA,transposase,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096792374.1\|429608_430613_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_096792375.1\|430713_430965_+	hypothetical protein	NA	NA	NA	NA
WP_096792376.1\|431045_433871_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	5.2e-312	56.5
WP_096792377.1\|434033_435401_+	MFS transporter	NA	NA	NA	NA
WP_007378609.1\|435421_436147_+	single-stranded DNA-binding protein	S5M9Z7	Pseudoalteromonas_phage	1.7e-47	76.1
WP_096794062.1\|436715_438869_+	response regulator	A0A1V0SGX0	Hokovirus	5.3e-49	31.9
WP_096794063.1\|439147_440542_-	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA
WP_096792378.1\|440552_442091_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_096792379.1\|442204_443236_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	1.0e-37	29.5
WP_096792380.1\|444291_445683_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_096792381.1\|446144_447323_+\|transposase	IS4 family transposase	S5FM71	Shigella_phage	5.1e-70	38.9
WP_096792382.1\|447584_449975_+	PAS domain S-box protein	A0A1V0SL97	Klosneuvirus	6.0e-17	36.2
WP_096792383.1\|449971_450586_+	response regulator transcription factor	NA	NA	NA	NA
WP_096794064.1\|451161_452754_+	EAL domain-containing protein	NA	NA	NA	NA
WP_096792384.1\|452750_453659_-	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase	NA	NA	NA	NA
WP_096792385.1\|454579_456622_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7F1	Microcystis_virus	5.3e-22	42.4
WP_002958401.1\|456757_457801_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	21.5
WP_033040858.1\|457809_458643_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_007378603.1\|458635_459115_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_008137331.1\|459115_459685_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_007378601.1\|459686_461159_+	ribonuclease G	NA	NA	NA	NA
WP_096792386.1\|461158_465016_+	TIGR02099 family protein	NA	NA	NA	NA
WP_096792387.1\|465012_465852_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_033040856.1\|465848_467288_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_007378994.1\|468078_468915_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_007378995.1\|470205_470769_+	RNA polymerase sigma factor	NA	NA	NA	NA
WP_008137321.1\|470933_471476_+	UpxY family transcription antiterminator	NA	NA	NA	NA
WP_007378997.1\|471478_471910_+	glycoside hydrolase family protein	A0A1Q1PW74	Pseudoalteromonas_phage	4.2e-30	50.0
WP_007378998.1\|471911_473897_+	ATP-binding protein	A0A0R6PCP6	Moraxella_phage	2.1e-23	29.9
WP_007378999.1\|473874_474501_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_096792388.1\|474612_476625_+	hypothetical protein	NA	NA	NA	NA
WP_096792389.1\|476687_477182_+	hypothetical protein	NA	NA	NA	NA
WP_007377706.1\|477210_477693_+	hypothetical protein	NA	NA	NA	NA
WP_008138021.1\|477765_478134_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_096792390.1\|478967_480011_+	hypothetical protein	NA	NA	NA	NA
WP_096792391.1\|480176_480893_+	hypothetical protein	NA	NA	NA	NA
WP_096792392.1\|481004_481592_+	hypothetical protein	NA	NA	NA	NA
WP_096794065.1\|482128_483061_+	hypothetical protein	NA	NA	NA	NA
WP_096792381.1\|483338_484517_+\|transposase	IS4 family transposase	S5FM71	Shigella_phage	5.1e-70	38.9
WP_007377702.1\|484682_485099_+	hypothetical protein	NA	NA	NA	NA
WP_007377701.1\|485162_485564_+	hypothetical protein	A0A1B1ITB4	uncultured_Mediterranean_phage	2.7e-23	44.4
WP_007377700.1\|486235_487675_+\|tail	phage tail sheath family protein	V5YTI0	Pseudomonas_phage	3.3e-10	30.0
WP_007377699.1\|487808_488255_+\|tail	phage tail protein	NA	NA	NA	NA
WP_008136322.1\|488304_488760_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_2

823056 : 901367

Shigella_phage(16.67%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096792381.1\|823056_824235_+\|transposase	IS4 family transposase	S5FM71	Shigella_phage	5.1e-70	38.9
WP_096792570.1\|830786_831710_+	glutaminase B	NA	NA	NA	NA
WP_033016283.1\|831747_833052_-	inosine/guanosine kinase	NA	NA	NA	NA
WP_007378794.1\|833230_833737_+\|tRNA	tRNA adenosine(34) deaminase TadA	A0A0B5J096	Pandoravirus	8.5e-06	38.8
WP_096792571.1\|834064_835567_-	membrane-bound lytic murein transglycosylase MltF	A0A0A0RVE6	Bacillus_phage	1.1e-11	39.6
WP_096794079.1\|835778_839669_+	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	8.8e-119	55.4
WP_096792572.1\|839945_842396_+	hypothetical protein	NA	NA	NA	NA
WP_007378800.1\|842398_842596_+	YnbE family lipoprotein	NA	NA	NA	NA
WP_096792573.1\|842607_842937_+	YdbL family protein	NA	NA	NA	NA
WP_002961067.1\|842985_843534_-	DUF1415 domain-containing protein	NA	NA	NA	NA
WP_096792574.1\|843530_844814_-	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_002961065.1\|844996_845587_+	SIS domain-containing protein	NA	NA	NA	NA
WP_096792575.1\|845586_847026_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	A0A0K0KVL9	Prochlorococcus_phage	2.3e-19	36.8
WP_096792576.1\|847274_848780_-	capsule assembly Wzi family protein	NA	NA	NA	NA
WP_096792577.1\|848991_850065_+	hypothetical protein	NA	NA	NA	NA
WP_008134928.1\|850061_851147_+	glycosyltransferase	NA	NA	NA	NA
WP_096792578.1\|851158_851887_-	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
WP_096792579.1\|852009_853068_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_096792580.1\|853067_853631_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_002961055.1\|853790_854984_+	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	3.1e-38	28.4
WP_096792581.1\|855034_856060_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.4e-17	80.8
WP_002961051.1\|856394_856712_+	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_096792582.1\|856708_857527_+\|protease	rhomboid family intramembrane serine protease GlpG	NA	NA	NA	NA
WP_007378947.1\|857530_857929_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_081824578.1\|858150_858363_+\|transposase	transposase	NA	NA	NA	NA
WP_096792583.1\|859569_863247_+	PKD domain-containing protein	A0A1V0SLL0	Klosneuvirus	2.3e-07	29.9
WP_096792584.1\|863257_865210_+	hypothetical protein	NA	NA	NA	NA
WP_096792585.1\|866524_867364_+	collagenase	NA	NA	NA	NA
WP_033030909.1\|869007_870144_+	hypothetical protein	NA	NA	NA	NA
WP_096792586.1\|870438_872607_+	PKD domain-containing protein	NA	NA	NA	NA
WP_096794080.1\|872850_872955_+\|transposase	transposase	NA	NA	NA	NA
WP_096792587.1\|873120_873672_+	chorismate lyase	NA	NA	NA	NA
WP_007377866.1\|873668_874547_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_007377865.1\|874559_875180_-	prolyl 4-hydroxylase subunit alpha	NA	NA	NA	NA
WP_096792588.1\|875274_876159_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_007377863.1\|876544_876967_-	DUF2721 domain-containing protein	NA	NA	NA	NA
WP_008134890.1\|877051_877405_+	DUF2007 domain-containing protein	NA	NA	NA	NA
WP_008134889.1\|877397_877988_+	YjaG family protein	NA	NA	NA	NA
WP_096792589.1\|878028_879042_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.9e-105	56.0
WP_033030919.1\|879053_879665_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_033030921.1\|879912_880272_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_096792590.1\|880272_880761_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_007377856.1\|880757_881558_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_096792591.1\|881737_883093_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_033030926.1\|883094_883715_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_096792592.1\|883714_884644_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.3e-24	31.1
WP_096792593.1\|884644_885412_+	ABC transporter permease	NA	NA	NA	NA
WP_096792594.1\|885411_886095_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_096792595.1\|886083_887967_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_096792596.1\|888241_889867_+	putative pyridoxal-dependent aspartate 1-decarboxylase	S4W1T5	Pandoravirus	1.6e-13	25.2
WP_096792597.1\|890144_891299_-	acetylornithine deacetylase	NA	NA	NA	NA
WP_096792598.1\|891520_892531_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_033040076.1\|892531_893299_+	acetylglutamate kinase	NA	NA	NA	NA
WP_007377845.1\|893306_894239_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_008166173.1\|894235_895438_+	argininosuccinate synthase	NA	NA	NA	NA
WP_007377843.1\|895486_897352_+	argininosuccinate lyase	NA	NA	NA	NA
WP_096792599.1\|897581_897782_+	hypothetical protein	NA	NA	NA	NA
WP_096792601.1\|898838_899354_+	hypothetical protein	NA	NA	NA	NA
WP_007379010.1\|899626_899920_+\|transposase	transposase	Q716C1	Shigella_phage	1.5e-10	38.3
WP_096792602.1\|900269_901367_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1327533 : 1405823

Cronobacter_phage(14.29%)

integrase,transposase

attL 1369982:1369999|attR 1406203:1406220

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096792777.1\|1327533_1328949_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_157770537.1\|1331070_1331421_+	hypothetical protein	NA	NA	NA	NA
WP_008137432.1\|1331429_1331696_+	DksA/TraR family C4-type zinc finger protein	K4F9U1	Cronobacter_phage	4.7e-16	47.7
WP_007378595.1\|1331988_1332375_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_002962960.1\|1333049_1333928_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_096792778.1\|1334075_1336334_+	alginate lyase	NA	NA	NA	NA
WP_096792779.1\|1336339_1338559_+	alginate lyase	NA	NA	NA	NA
WP_002962963.1\|1338564_1338909_+	cupin domain-containing protein	NA	NA	NA	NA
WP_096792780.1\|1338911_1340219_+	MFS transporter	NA	NA	NA	NA
WP_096792781.1\|1340293_1341226_+	sugar kinase	NA	NA	NA	NA
WP_096792782.1\|1341455_1342073_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_096792783.1\|1342087_1343170_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_096792784.1\|1343166_1344129_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.4e-44	35.3
WP_096792785.1\|1344588_1347321_+	poly(beta-D-mannuronate) lyase	NA	NA	NA	NA
WP_096792786.1\|1347707_1350746_+	TonB-dependent receptor	NA	NA	NA	NA
WP_096792787.1\|1351029_1351770_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_007378953.1\|1352324_1352792_-	redox protein	NA	NA	NA	NA
WP_096792788.1\|1352873_1353431_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_033016109.1\|1353870_1355781_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_096792789.1\|1356208_1358044_-	hypothetical protein	NA	NA	NA	NA
WP_157770538.1\|1358121_1358391_-	hypothetical protein	NA	NA	NA	NA
WP_096794093.1\|1358833_1362580_+	AAA family ATPase	NA	NA	NA	NA
WP_096792790.1\|1362653_1363289_-	endonuclease III	NA	NA	NA	NA
WP_096792791.1\|1363335_1364034_-	electron transport complex subunit E	NA	NA	NA	NA
WP_007379032.1\|1364030_1364672_-	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_096792792.1\|1364668_1365727_-	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_096792793.1\|1365723_1368267_-	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_007379057.1\|1368275_1368830_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_008134172.1\|1368831_1369413_-	electron transport complex subunit RsxA	NA	NA	NA	NA
1369982:1369999	attL	NA	NA	NA	NA
WP_096792794.1\|1370031_1371972_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_007378929.1\|1373543_1374923_+	MATE family efflux transporter	NA	NA	NA	NA
WP_007378930.1\|1374919_1376914_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_096792795.1\|1376916_1377855_+	methyltransferase domain-containing protein	W6LLI2	Streptococcus_phage	2.8e-18	27.3
WP_096792796.1\|1377855_1378536_+	hypothetical protein	NA	NA	NA	NA
WP_096792797.1\|1378637_1379660_+	hypothetical protein	NA	NA	NA	NA
WP_010553668.1\|1379664_1379907_-	hypothetical protein	NA	NA	NA	NA
WP_096792798.1\|1380377_1380827_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_008136967.1\|1380920_1381577_-	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	4.7e-41	40.7
WP_002960417.1\|1381723_1382389_+	7-carboxy-7-deazaguanine synthase QueE	A0A2L0HKD5	Mycobacterium_phage	1.3e-09	32.0
WP_096792799.1\|1382630_1383374_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_096792800.1\|1383645_1384683_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_096792801.1\|1385131_1385758_-	hypothetical protein	A0A0N7IRG5	Acinetobacter_phage	1.0e-21	39.4
WP_096792802.1\|1386054_1386573_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_096792803.1\|1387309_1388515_+	hypothetical protein	NA	NA	NA	NA
WP_096792804.1\|1388504_1388981_+	hypothetical protein	NA	NA	NA	NA
WP_096792805.1\|1388980_1390909_+	DUF3732 domain-containing protein	NA	NA	NA	NA
WP_096794094.1\|1391213_1391516_-	helix-turn-helix transcriptional regulator	Q0H244	Geobacillus_phage	2.5e-05	33.3
WP_096792806.1\|1391637_1392177_+	hypothetical protein	NA	NA	NA	NA
WP_096792808.1\|1392786_1393704_+	hypothetical protein	NA	NA	NA	NA
WP_096792809.1\|1393775_1394132_+	hypothetical protein	NA	NA	NA	NA
WP_096792810.1\|1394707_1395166_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_096794095.1\|1395220_1396402_-	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_096792811.1\|1396538_1398707_-	ATP-binding protein	NA	NA	NA	NA
WP_157770536.1\|1398727_1399987_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_096792812.1\|1400231_1400702_-	hypothetical protein	NA	NA	NA	NA
WP_096792813.1\|1400694_1402749_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_096792814.1\|1402758_1404582_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_096792815.1\|1404578_1405823_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1406203:1406220	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1954242 : 1965171

Vibrio_phage(33.33%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002960878.1\|1954242_1955073_+	carbohydrate ABC transporter permease	Q6GZ02	Mycoplasma_phage	3.3e-07	27.3
WP_096793089.1\|1955083_1956085_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.7e-24	33.3
WP_002960874.1\|1956333_1957293_+	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_096793090.1\|1957892_1959035_-\|head	phage head morphogenesis protein	B5TA65	Burkholderia_phage	4.8e-49	38.6
WP_096793091.1\|1959036_1959579_-	hypothetical protein	D4HTZ6	Vibrio_phage	1.2e-42	48.9
WP_096793092.1\|1959581_1960025_-	hypothetical protein	M4MHH2	Vibrio_phage	9.3e-25	46.0
WP_096793093.1\|1960035_1960650_-	DUF3164 family protein	A0A2D1GNM4	Pseudomonas_phage	3.2e-39	39.8
WP_096793094.1\|1960642_1962145_-	DUF935 family protein	B5TA67	Burkholderia_phage	4.8e-57	30.2
WP_096793095.1\|1962134_1963874_-	hypothetical protein	A0A2D1GNP7	Pseudomonas_phage	2.1e-165	52.4
WP_096793096.1\|1963873_1964380_-	DUF1804 family protein	NA	NA	NA	NA
WP_096793097.1\|1964379_1964718_-	hypothetical protein	NA	NA	NA	NA
WP_096793098.1\|1964727_1965171_-	hypothetical protein	R9TJQ5	Vibrio_phage	2.3e-23	41.4

DBSCAN-SWA_5

2186545 : 2247202

uncultured_Mediterranean_phage(16.67%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096793225.1\|2186545_2187724_-\|transposase	IS4 family transposase	S5FM71	Shigella_phage	7.4e-69	38.7
WP_096793226.1\|2188480_2189455_-\|transposase	transposase	NA	NA	NA	NA
WP_096793227.1\|2190310_2190952_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_033040169.1\|2192429_2193044_+	hypothetical protein	NA	NA	NA	NA
WP_096793228.1\|2193650_2194955_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.8e-93	51.0
WP_021032117.1\|2194964_2195345_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.1e-09	38.5
WP_096793229.1\|2195337_2196681_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.1e-76	37.7
WP_096793230.1\|2196673_2197300_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_096793231.1\|2197296_2199798_-	DUF87 domain-containing protein	A0A218M9A2	Mycobacterium_phage	6.1e-89	49.3
WP_033014887.1\|2199969_2200449_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_007375670.1\|2200591_2201713_+	alanine dehydrogenase	NA	NA	NA	NA
WP_096793232.1\|2201832_2203158_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_096793233.1\|2203445_2204396_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.0e-60	41.4
WP_096793234.1\|2204493_2205210_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_096793235.1\|2205202_2205907_+	arginyltransferase	NA	NA	NA	NA
WP_002962494.1\|2205997_2206216_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_096793236.1\|2206429_2208691_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	41.0
WP_007375663.1\|2208785_2209094_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.3e-13	37.4
WP_002962500.1\|2209303_2209522_+	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	7.3e-15	58.2
WP_096793237.1\|2210039_2212262_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_096793238.1\|2212370_2213612_-	amidohydrolase family protein	NA	NA	NA	NA
WP_008136198.1\|2213624_2215007_-	amidohydrolase	NA	NA	NA	NA
WP_096793239.1\|2215107_2215893_-	hypothetical protein	NA	NA	NA	NA
WP_096793240.1\|2216142_2216502_+	DUF3718 domain-containing protein	NA	NA	NA	NA
WP_007375657.1\|2216560_2217253_-	hypothetical protein	NA	NA	NA	NA
WP_096793241.1\|2217377_2218250_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_007375655.1\|2218365_2218569_+	CPXCG motif-containing cysteine-rich protein	NA	NA	NA	NA
WP_096794117.1\|2218570_2219197_-	riboflavin synthase subunit alpha	A0A2I2L4R9	Orpheovirus	5.2e-21	38.5
WP_096793242.1\|2219325_2220681_+	MATE family efflux transporter	NA	NA	NA	NA
WP_096793243.1\|2220658_2221711_+	DUF3080 family protein	NA	NA	NA	NA
WP_096793245.1\|2222485_2223634_-	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_157770542.1\|2224296_2225037_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_084166018.1\|2225296_2226274_+	hypothetical protein	NA	NA	NA	NA
WP_096793247.1\|2226434_2226791_+	hypothetical protein	NA	NA	NA	NA
WP_096793248.1\|2227098_2227476_+	hypothetical protein	NA	NA	NA	NA
WP_096793249.1\|2227845_2229189_+	hypothetical protein	NA	NA	NA	NA
WP_096793250.1\|2229796_2231194_-	sugar porter family MFS transporter	NA	NA	NA	NA
WP_096793251.1\|2231267_2232308_-	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	3.7e-32	29.3
WP_096793252.1\|2232519_2234130_+	glycoside hydrolase family 43 protein	NA	NA	NA	NA
WP_096793253.1\|2234191_2235148_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_024599023.1\|2236797_2238117_+	xylose isomerase	NA	NA	NA	NA
WP_096793254.1\|2238156_2239095_+	transaldolase	A0A0C5AMY8	Cyanophage	3.0e-12	34.4
WP_096793255.1\|2239153_2241172_+	transketolase	NA	NA	NA	NA
WP_096793256.1\|2241279_2241663_+	hypothetical protein	NA	NA	NA	NA
WP_096793257.1\|2241676_2242654_+	galactose mutarotase	NA	NA	NA	NA
WP_096793258.1\|2242722_2243871_-	endo-1,4-beta-xylanase	NA	NA	NA	NA
WP_157770543.1\|2244687_2245998_-	hypothetical protein	NA	NA	NA	NA
WP_096793260.1\|2246104_2247202_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2926964 : 2935121

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007376078.1\|2926964_2928008_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	4.9e-117	64.5
WP_007376077.1\|2928076_2928565_-	CinA family protein	B5TK85	Pseudomonas_phage	6.0e-25	42.5
WP_096793583.1\|2928586_2931172_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	6.2e-36	25.5
WP_007376075.1\|2931265_2932240_-	RNA polymerase sigma factor RpoS	A0A2I7SAT0	Vibrio_phage	6.0e-32	30.5
WP_096793584.1\|2932275_2933100_-	peptidoglycan DD-metalloendopeptidase family protein	G3MBP9	Bacillus_virus	4.0e-05	35.1
WP_096793585.1\|2933140_2933719_-	DedA family protein	NA	NA	NA	NA
WP_033028946.1\|2933728_2934367_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.1e-38	52.0
WP_007376071.1\|2934356_2935121_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.5e-70	53.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP012738

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP012737

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection