CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP023550	Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence	1 crisprs	csa3	1	1
NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	1 crisprs	csa3,cas3,WYL	1	1
NZ_CP023548	Rhodobacter sp. CZR27 chromosome, complete genome	2 crisprs	cas3,DEDDh,WYL,csa3	0	6
NZ_CP023551	Rhodobacter sp. CZR27 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023550_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023550_1

69681-69761

Orphan

Consensus_repeat	Method
AAATGTTTCGCGCGCGAAACAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023550_1

>merge|NZ_CP023550|1|69681-69761|CRISPRCasFinder
AAATGTTTCGCGCGCGAAACAAATCGGTGGGGAAGCAGGCGGGATGAGGCGGGGCAAAATGTTTCGCGCGCGAAACAAATC

>NZ_CP023550|1|1|69681-69761|CRISPRCasFinder
AAATGTTTCGCGCGCGAAACAAATC	GGTGGGGAAGCAGGCGGGATGAGGCGGGGCA
AAATGTTTCGCGCGCGAAACAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023550.1\|WP_096788009.1\|58407_59949_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|226041
NZ_CP023550.1\|WP_096788023.1\|80559_81564_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023550.1\|WP_096788022.1\|77420_78221_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NZ_CP023550.1\|WP_096788015.1\|64865_65429_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NZ_CP023550.1\|WP_096788021.1\|73278_74892_-\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240532
NZ_CP023550.1\|WP_096788013.1\|63073_63823_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369778
NZ_CP023550.1\|WP_096788017.1\|68212_69667_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274585
NZ_CP023550.1\|WP_096788014.1\|63819_64860_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP023550.1\|WP_096788093.1\|75771_76911_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|226055
NZ_CP023550.1\|WP_157764696.1\|71105_72161_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|132997
NZ_CP023550.1\|WP_096788024.1\|81642_83001_-\|sulfotransferase-family-protein	unknown	unknown	gnl\|CDD\|226081
NZ_CP023550.1\|WP_096788011.1\|61332_62223_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NZ_CP023550.1\|WP_096788012.1\|62219_63077_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NZ_CP023550.1\|WP_096788092.1\|66478_67390_-\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|370826
NZ_CP023550.1\|WP_096788020.1\|72182_73292_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227372
NZ_CP023550.1\|WP_096788010.1\|59954_61217_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379276
NZ_CP023550.1\|WP_096788016.1\|65498_66437_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133039
NZ_CP023550.1\|WP_096788025.1\|83023_84070_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023550.1\|WP_096788094.1\|78285_80559_+\|glycosyl-transferase-family-1	unknown	unknown	gnl\|CDD\|379549
NZ_CP023550.1\|WP_096788018.1\|69788_70853_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|274586

Protein	Function_ID	Function_description	E-value
NZ_CP023550.1\|WP_096788009.1\|58407_59949_-\|glycosyltransferase	gnl\|CDD\|226041	COG3510, CmcI, Cephalosporin hydroxylase [Defense mechanisms].	1.64758e-43
NZ_CP023550.1\|WP_096788022.1\|77420_78221_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.71858e-32
NZ_CP023550.1\|WP_096788015.1\|64865_65429_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	4.49049e-100
NZ_CP023550.1\|WP_096788021.1\|73278_74892_-\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|240532	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. This family might function as a translocase for lipopolysaccharides and participate in the biosynthesis of cell wall components such as teichuronic acid. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.12332e-97
NZ_CP023550.1\|WP_096788013.1\|63073_63823_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.60735e-07
NZ_CP023550.1\|WP_096788017.1\|68212_69667_+\|AAA-family-ATPase	gnl\|CDD\|274585	TIGR03453, partition_RepA, plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. [Mobile and extrachromosomal element functions, Plasmid functions].	7.60792e-58
NZ_CP023550.1\|WP_096788014.1\|63819_64860_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP023550.1\|WP_096788093.1\|75771_76911_-\|sugar-transporter	gnl\|CDD\|226055	COG3524, KpsE, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	8.63752e-73
NZ_CP023550.1\|WP_157764696.1\|71105_72161_+\|glycosyltransferase	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	4.31015e-22
NZ_CP023550.1\|WP_096788024.1\|81642_83001_-\|sulfotransferase-family-protein	gnl\|CDD\|226081	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown].	6.73952e-58
NZ_CP023550.1\|WP_096788011.1\|61332_62223_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.40822e-169
NZ_CP023550.1\|WP_096788012.1\|62219_63077_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	2.18216e-122
NZ_CP023550.1\|WP_096788092.1\|66478_67390_-\|replication-initiator-protein-A	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	1.58039e-120
NZ_CP023550.1\|WP_096788020.1\|72182_73292_-\|hypothetical-protein	gnl\|CDD\|227372	COG5039, COG5039, Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.50858e-49
NZ_CP023550.1\|WP_096788010.1\|59954_61217_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.45722e-14
NZ_CP023550.1\|WP_096788016.1\|65498_66437_-\|glycosyltransferase	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	8.78834e-70
NZ_CP023550.1\|WP_096788094.1\|78285_80559_+\|glycosyl-transferase-family-1	gnl\|CDD\|379549	pfam14307, Glyco_tran_WbsX, Glycosyltransferase WbsX. Members of this family are found in within O-antigen biosynthesis clusters in Gram negative bacteria, where they are predicted to function as glycosyltransferases.	4.80953e-143
NZ_CP023550.1\|WP_096788018.1\|69788_70853_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|274586	TIGR03454, partition_RepB, plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently. [Mobile and extrachromosomal element functions, Plasmid functions].	4.40027e-12

>NZ_CP023550.1|WP_096788017.1|68212_69667_+|AAA-family-ATPase
MAETRGRKTAARGRVDLRKGPPAREPQVPLPPYFNISPDAALAELEAPLTTAGFAEIARSCAQGRDDLASRGLDEEGRRSLRLFSTWEITRYLIPVATAHFRRVLKANPDLPQGISETEGGAKWFTLDEVLRLRAHFAAEGSKAKEYRPYRPAGLPAKLVAVANFKGGVGKTSTAAHLAMSAALDGYRVLVIDLDSQGSMTSIFGGRVADEWGTVFPLLARHYAGHLQSENRLRVSRGEAPVPMDETLTEALKIRAGDLIAKTHWPNIDLIGAQLNLYWAEFQIPVWRMQGRSWKLWDALTDVLGEDGVLDRYDVIFIDTPPALGYLTINGLAAADILLVPLGASFLEFDSTGRFFDMLHSTFRSIEEGENIAARALGREELSFEWDAVRAVLTRFDGAQQGEMAALMQAYMGRTMSPVRQDFTALIGQAGEQVNGIYEADYRDFNRDTYIRGRETFDATYAAFKRLLMGIWRREELAAAEAAE
>NZ_CP023550.1|WP_096788092.1|66478_67390_-|replication-initiator-protein-A
MASMEHPVFSLATRPDLRVLDYSHNGVRITVTPSVRGLATLFDKDILIYCISQLMAALNAGRAISRTLHLTAHDLMTATNRETSGDGYQRLREAFERLAGTRITTNIEQGGREITTGFGLIESWQIVRRSRGGRMVQVMVTLSEWLFQAVLTKSVLTLSRDYFRLRKPLERRIYELARKHCGHQPEWRVSIATLAKKSGSASPLRVFRKMIRDMIEANALPGYLLAEEPGDMLCVTRREAVLAPGLAPSLREATLEKVRALMPGWDVHALVAEWQSFWHRSGQPRLRSADAAFLGWVERRAGA
>NZ_CP023550.1|WP_096788016.1|65498_66437_-|glycosyltransferase
MTESHPPRIAILLATYNGAANLDEQLESYAAQHLRPAMLIVSDDGSADATRERVAAFAARHPWLEVRLIDGPCQGSAKNFLHLLGQVPPEADMIALSDQDDVWLPDKLARGARALAAEPADLPVLYGGSSWICDADLGNRRPYPLPQRAPGFRHALVQNIAGGNTMMLNRGGIDLLAEASREPGRLVVHDWWIYQIVSGAGGRVIFDPVPLLLYRQHGGNLIGANHGLAAKKRRLMMLLSGRFRQWNSINIRALRASAHRLTPENRRLLQEFDALRRAGPFNRLRRLNRIGLYRQGLPGSMSLWLAAVLGRI
>NZ_CP023550.1|WP_096788015.1|64865_65429_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MKIEETELPGVLILTPRVFGDARGSFCESWNRATLAGLGIDLDFVQDNQSISVPVGTVRGLHYQAPPHAQDKLVRVGHGAILDVAVDVRVGSPTYGKWVGVELSAENARQLLVPKGFLHGFVTRAPATVVLYKTTDVYAPDCDGAVHFADPDLGVDWGIDPATAILSDKDARAPRFADWTSPFTYEA
>NZ_CP023550.1|WP_096788014.1|63819_64860_-|dTDP-glucose-4,6-dehydratase
MKLIVTGGAGFIGSAVVRQAVAKGHHVVNVDCLTYAACLENLASVADAPTYAFEKADIRDAEAMARVFATHRPDAVMHLAAESHVDRSIDGPGAFIDTNVRGTYVLLEAARAYWVGQGKPAGFRFHHISTDEVFGTLGETGQFTEDTPYAPNSPYSASKAASDHLVRAWGETYGLPYVLTNCSNNYGPFHFPEKLIPVVILKALAGEPIPVYGKGENVRDWLYVEDHADALLTVLARGENHRSYNIGGENEAKNIDIVRKICAILDRKRPKTTPYAEQIAFVTDRPGHDLRYAIDPTRIRTELGWRPSVTLDEGLERTVDWYLANEPWWRALQDRAGVGQRLGVKA
>NZ_CP023550.1|WP_096788013.1|63073_63823_-|class-I-SAM-dependent-methyltransferase
MTDSRGLSADEARRLRPGDEHYRAYVGPPGQWDYMGATQFRLLTTLGLREGHRLLDVGCGGLRAGRLLMMYLARGHYYGIEPNMWLVEDAIERELGPQFVALKAPVFSDSAEFAADAFAVKFDFIVAQSIFSHTGSDLLSRALERFRTALAPDGLILATFLHSEDRPDLPVEAPGWTYPGCTSFSRPRIAELVSAAGLVSRPLPWFHPRQSWHALAHRVEALPPADQDHHLTGAVLRDAEFAASRKELR
>NZ_CP023550.1|WP_096788012.1|62219_63077_-|dTDP-4-dehydrorhamnose-reductase
MKDLMVFGRTGQVARELARLAPDARFLGRDEADLTDPEACARAIREAMPSAVINAAAWTAVDRAEDEEAEATLVNGEAPGAMARACADLGIPFVQISTDYVFDGSGERPWRPGDPVGPLGAYGRSKLAGEEAVRAAGGTHAILRTSWVFSAHGANFVKTMLRLGATRERLTVVMDQVGGPTPAAEIAATCLAMAEALVSKPELSGTYHLSGAPDVSWAGFAREIFRQADLPCEVQDIPSAEYPQKAHRPANSRMDCSDLSRFGLARPDWRQGLARVLSDLQGVSS
>NZ_CP023550.1|WP_096788011.1|61332_62223_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MTARKGIILAGGSGTRLYPVTIGVSKQLMPVYDKPMIYYPLTVLMHAGIREIAIITTPQDQDQFRRVLGDGSQWGLSLTYVVQPHPGGLAQAYTLTEDFLAGAPSCMVLGDNIFFGHGLPALLAEADGQETGGTVFGYHVADPERYGVVAMDEQGRVTQIIEKPKVPPSNYAVTGLYFLDARAPEFAHGLKPSARGEIEITSLLEIYLEEGTLDVKRMGRGFAWLDTGTHGSLLDAGNFVRTLQKRQGMQTGCPEEVAFHNGWIDAAALRTLACKLDKNDYGRYLQALLTEQMMEG
>NZ_CP023550.1|WP_096788010.1|59954_61217_-|methyltransferase-domain-containing-protein
MPEIPHPGDLMHLSSFENMQRCIDWYCPPGARVVDLGAASVNGSYRDLFPPGTAYTGFDLAPGPGVDVVLEDPYVLPLADGSVDLVVSGQMLEHCPQFWRVFTEVARVLAPGGLAFMIAPSEGPIHRYPVDCYRFYPDAWGAMADWAGLRLVHCWRDQRGPWCDLVGVFQKGGTLERLTAPKPAQPILLPAAPHPDPAAEATRGKRPYREVLEEMHRLLSPRLYCEIGVRKGQSLALCRGRAVAIDPSPDIETLPGTATLHRCTSDDFFFFAGDSPFDGRVDFAFIDGMHLSEFVLRDFMNLERHMSPKGVIVVDDVLPNHPVQALRERQSQVWTGDVWRFARLLSEIRPDLQLTWLDTEPTGLLVVRGLKPQNRVLWNRYNPEIRKLLEAGDEPVPEDLLTRAHALDPTAEAIRAAIGR
>NZ_CP023550.1|WP_096788009.1|58407_59949_-|glycosyltransferase
MPDLSLVVCAHDMERELPRTLFSLCPPYQRLPAGLSCEILVIDCGSARPVEAAALSCGGVDLRVLRVPACPSPAAAINAAMAETRGQLVGLWIDGARLSSPGLLARAVEAWRADPSRAIGTLAFHLGPDVQMRSVGTGYDRAAEDALLASVPWRKDGYRLFDISVLAGSSAEGWFGCISETNGLFLDRKLWDRLGGLDERFHSPGGGYVNLDLWQRAVALSGDEPWIVLGEGTFHQVHGGAATNGTAAARKAMAAEYETLIGRPHRSLVYRPRLIGTLSPTVLARGSRPPPEPPRRVQSVGGRAFRIALPPEVLDRVQAGTLRTRYRGLRFAKNPFDIALYLRLIEALAPATIIEIGTSEGGSAVWFRDQCRTLGLQTGILSLDLKRPPLEEEGIRFLAVDSTDPAGTFPTDLIDAAPRPWLVIEDSAHTYESVAAVLSYFDPRLQPGDRLVVEDGVVADMRAEAYRRYDDGPNRAVAEFLLAHPGRYRIDAELCDFYGPNVTWCPNAWLERI
>NZ_CP023550.1|WP_096788018.1|69788_70853_+|ParB-N-terminal-domain-containing-protein
MAKRKRLTVPPMGGFAAPAAPEAKPLLGPGLAPAPISRVTGEAAATAALREVAEELTSARAEGRLVLRLALDRVEESWLVRDRLGIEAEELDSLMASLASHGQRSPIEVADMGEGRFGLISGWRRVTALRRLLATTGEERFASVLAILRRPETAAEAYVAMVEENEIRLGLSYFERARIAAKAVEAGVFPTEKAALQQLYASASRARRSKIGSFLGIYQALDGALRFPAALPERLGLALARRIEEEPDFAEGLAARLAAAGPDTAEAELALIAEAVAGAGQPDPASAGAAPAEAAPAPCDSPAPRRTRPAAAAAAEIRPGVFLKGARGGELVLFGPAVDEGFRDRLRDWLAGQG
>NZ_CP023550.1|WP_157764696.1|71105_72161_+|glycosyltransferase
MGRTLRTAERMQRPAADWEILIVDNASTDRTAEVVAAFSGRLPIRRILEPVPGLSHARNRGLSEAQGRYICWTDDDVLVDRGWLAAYADAFRRHPGASFFGGRVEPVFDGEVPGWVSGNRDLLRFLMAERDLSPTELVFERGSVDLPFGANFAVRTDEQRRHRYDPELGVAPGRPRLGEETTVLLAILEAGGRGIWIPDALVRHVIPAERLTPRYVAAYFRSAGETWAFLARTGRPSSMGPPPAPGRRHLLGAPGWIWRTVLVKGASCHFGASRSITRDWLENWIHYNYMRGALRDFRTARREAAAAVPHPAGWAAEWRRRLLASLGRPRHPQALARVPVPACPAEDRRRA
>NZ_CP023550.1|WP_096788020.1|72182_73292_-|hypothetical-protein
MQAADPLTAPAPSVTHREVIFRLQAAIDAALAPVLPALAAEPFALLDFPDHANVGDSAIWLGELAWLTRNAGRAPALTCRFDDPADRLDRLPPGPILLHGGGNFGDVWPQHQLFREAVLARFPGRPVVQMPQSIHYGDATALARTARVIERHGAFTLLVRDRPSMELARRHFPCEARLCPDMAFALGELPRPAAPDLDVLLLLRTDREAVGGPAPADLPADWPVEDWLTDDPGLYRAALRRTRLGAVLSLDPPAWAGRPAGWTWRTGWPGRGSGAGWRSCRGRASSSPTGCMSMSWPPCSGCRMSSWTTATARSGGSRTASAQGGTDAAAPRAAPRRWRSPGAIWRPPGADPRGSTGRPRPRGARSGGP
>NZ_CP023550.1|WP_096788021.1|73278_74892_-|lipopolysaccharide-biosynthesis-protein
MRHGPAQPLVGALLADVRCRPGPALSCSPRPLPAGEPGMTETVLAPSDGLKRKTVVAVLWSVLRTGWTTLATFVLFVVLARLLGPADFGVFALASLVLEAARILANAGLADAVIRERELDETLADTAFWAVLGLSALAGAAAFAAAPLYARMLGQEEVAAVIRWLAVLLPVSALGAIHGARLAREFRQKSLALQGMVTSLASGVAAVAAAWAGWGIWALVVQSAVASTLGVGLAWWSFRWRPGLGFRWSRLRGLLGFSASMVTTQLLWMLLVRVQDLFLARWHGTEAVGTYRIAWRLIELIGQSVLAPAGSVALVALSRLQGDPVRFARGYNRILGAAGLAVFPMMFGFGALAPEVFPLLFGETWAGAAPVAMVLVLMAVPFVTNFFAGPALAAVNRAQSVLAVAALQFAATLVLTAALVPFGLMAVAAAYVLRAYLTLPVQQVALRRHAGVEPRDTAAALAPPLLASLGMAAGVWMAKDPLALWLGAGWPMVAGAVVLGVLLHAGLMLLLGRPMLRELADLARSMKSEPRDADAGR
>NZ_CP023550.1|WP_096788093.1|75771_76911_-|sugar-transporter
MPAVAPAATARLRHHGILASFLGIVVAPTLAASLYLFAVADDQYTSTVGFSVRSEDMSSALDLLGGLGSLGLSGTGEASDSDILYQFIQSQELVQRIDATVDLRAIYSKPAFDPVFAFDPDRGIEDLVEYWQDMVRISYDSTTGLLELRVHAFDPKDAQTVAQLILDESTRMINDLSAIARADATRYAKEELDKSIERLRDQRVALTEFRSRTQIVDPKADIQGQMGLLNTLQQQLAATSIDINLLRQTTQPNDPRIAQNERRIAVIEELIQREREKFGMGGGADGKESDYSTLVGEYERLSVDLEFAEKAYVAALTNYDAAVAEAQRMSRYIAAYVRPTLAEESLYPQRGLLSLLTGGLALLVWSIGLLIYYSVRDRR
>NZ_CP023550.1|WP_096788022.1|77420_78221_+|ABC-transporter-permease
MVTLSGLLSGRGFVWGRSVLSLMLREMATSYGRSPGGYLWAIAEPVGGLALMTIVFSFVLRTPPLGSNFALFYATGFLPFTYYASLTSKLGQAIRYSKPLLAYPTVSYFDAILSRFLLNTITTLVVFVIVMSGIIALYDLNVSLNIPAILESFGMAGAIALGVGTLNCYLFSVAPVWERVWSILNRPMFILSGIFFLLETTPEPFRSMLWFNPLVHVIAKMREGFYSTYDARLASPLYAYSVALVCLFFGMLLLTRHHRMLLNEGA
>NZ_CP023550.1|WP_096788094.1|78285_80559_+|glycosyl-transferase-family-1
MSESVPATLRRLIRLARVMTLTPSERRYLRAIRRSGLFDRTYYRGAYPGLNPLYLRYPEKHYIAYGERMGYRPNPDFSPEAYLRYHPDVAAARVAPFLHYIRIGHAEQRLTKDLPEVVVLPATGLPQIRFEQGRATAPHAVVVHVYYPDLWPEFAERLRRLTLPFDLYVTLTYRGDETDELARAIRAEFPAAFVTPMPNRGRDILPFLTLLNAGALDGYRAVCKFHTKKSPHRQDGDIWRRHLIEGILPEKGLEEKLEAFVNDPTAAFWVADGQHYTGTEWWGSNVEATRRLLQRIEIPMERDRLSFPAGSIYWVKPLVLGLLRSLRLRPEDFDPEEGQVDGTIAHAIERVLGYLAARAGQKILQTSQIRPGALPAAPARPAFVSAFYLPQFHPVPENDAWWGKGFTEWRSAVLAQPAFAGHLQPMLPSDLGFYDLRVTEVMGEQARLARSAGIDAFCVYHYWFDGRRILEAPIDRLMARPGIDFPFYLCWANESWRRNWDGLSGTVLLEQTYAEGFEAKLAADTAPCLRDPRYARPDGRRPRFVIYRPEDMPDPEASIARLREAWRREGIGEVELGAVRFHVEGAHPVPEGVFDFWVEMPPHGLVKGPDFLFGGPEGNRMPAEIDPAFRGLVYDYASVARRALSETYVRTLPRNTIAGIMPGWDNTARRGAAAHVAYGANPATFNLWLEGALARRVPASYRRELFVNAWNEWAEKAVLEPSLTFGDLNLQVMRQHLGAAEPAARPAEPPAQGMRSN
>NZ_CP023550.1|WP_096788023.1|80559_81564_+|hypothetical-protein
MARVVLHIGTHKTATTTIQDMFAHNAALLRQHGVIYPRLSRVAGHHGLVMEWNRLPEIYAVPNGSIETLKQLSKDYAHVPGTLFLSSEEFSRGKPGARVDFRAVRELLSGFEGISVVCVLREQWQFMQSIYLQASKERQPPKPSVMIQSVLKQDMTDGLWTDYNLLYDHLLEAFAPEEIAFLDFDTCRRHPDGIVGAMLDHLGCGLSGASLQVVHGGQSNVSPLSLPTWAACAISEPDRAPAWLIESTTGAFRAEHGEEATPCLWTRGEFAQLTTYSRRRNDRLSERVKAVQPDFRISQSEPGETVVFRDGLAASFWTRCCRWMYRARKPALSG
>NZ_CP023550.1|WP_096788024.1|81642_83001_-|sulfotransferase-family-protein
MPLDQAPPPRIALVVLGMHRSGTSALAGVLGHMGCDLPQDLMPPTEANPRGHFESLKVYYLNDAILASAGSSWDDWTAFNDEWYLSPRFAEFRARAAEVLTEEFGRSSLIVLKDPRICRLLPFWKQVLADAGFRPLFVCTHRAPSEVAASLTRREGWPEARGHLLWLRHVLEAEAGTRRDERIFVSYDSLLSDWRATVQRIAEGLGLHLPRSLETAAPAIDDFLSAELRHFRPGDDRGAASLPDWIREPYRILGRWSDDGEATGDQAALDAIRAEVERAMPMLDMLGRAVESRSKIEEFRSSLTLREQEIAELRGQLASDAAARAALQEELERARQAQAECEARLRHASQHLESMTRRLAAEMERGLAAQLATRERLPLVERQLADLEHQLLHKTAHVAELERHAGDLETELAHARRHVAEMEARHAAILSSTSWKVTRPMRAVTQVLSRRS
>NZ_CP023550.1|WP_096788025.1|83023_84070_-|hypothetical-protein
MRMILHVGMPKTGSSSIQRHLHGTDLGHGVSLARWSEPNHSTLVWLLFQDEERLGDYHGFSARGPAFMAKLPAMKQRWLASLEEDCAASRNGTLILSGEGMATHACDSALHRLRAFLRDRAREVRVIGYVRSPRSFAASHFQQLLKGGRISTLDVASLWPGYRERFARLDELFGRENVTLRPYDRDRLRDGDVVADFLHLAGLAPPAGKSPEANTSLSAEATALLYLQRSRGEGFPAGFLGALQRNADFISRLRTIGRRKFDFSGELWTPVLEANRADLDWMEERLGASLPDRADPRAIQIGSERDLTRTAMQSYAALEELVASSIVETDRLAAEDTACAVDLLRRLS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023550_1	1.1\|69706\|31\|NZ_CP023550\|CRISPRCasFinder	69706-69736	31	NZ_CP023550	Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence	69706-69736	0	1.0
NZ_CP023550_1	1.1\|69706\|31\|NZ_CP023550\|CRISPRCasFinder	69706-69736	31	NC_023286	Streptomyces sp. F12 plasmid pFRL6, complete sequence	119524-119554	6	0.806

1. spacer 1.1|69706|31|NZ_CP023550|CRISPRCasFinder matches to NZ_CP023550 (Rhodobacter sp. CZR27 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtggggaagcaggcgggatgaggcggggca	CRISPR spacer
ggtggggaagcaggcgggatgaggcggggca	Protospacer
*******************************

2. spacer 1.1|69706|31|NZ_CP023550|CRISPRCasFinder matches to NC_023286 (Streptomyces sp. F12 plasmid pFRL6, complete sequence) position: , mismatch: 6, identity: 0.806

ggtggggaagcaggcgggatgaggcggggca	CRISPR spacer
ggtggggaagcaggcgggcagaggatgtgct	Protospacer
******************  ****  * **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

56910 : 69667

Enterobacteria_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096788008.1\|56910_58404_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.8e-24	26.1
WP_096788009.1\|58407_59949_-	glycosyltransferase	NA	NA	NA	NA
WP_096788010.1\|59954_61217_-	methyltransferase domain-containing protein	A0A1V0SL84	Klosneuvirus	4.3e-22	40.3
WP_096788011.1\|61332_62223_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.2e-90	56.4
WP_096788012.1\|62219_63077_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.6e-33	37.8
WP_096788013.1\|63073_63823_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_096788014.1\|63819_64860_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.3e-90	51.2
WP_096788015.1\|64865_65429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.4e-33	44.6
WP_096788016.1\|65498_66437_-	glycosyltransferase	NA	NA	NA	NA
WP_096788092.1\|66478_67390_-	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	2.0e-53	37.3
WP_096788017.1\|68212_69667_+	AAA family ATPase	A0A0K2FLP4	Brevibacillus_phage	2.0e-07	28.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP023549

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023549_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023549_1

101788-101920

Orphan

Consensus_repeat	Method
GCAGGCTCGCTGCCCGTTCCTTCCGGTTGCGGCGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023549_1

>merge|NZ_CP023549|1|101788-101920|CRISPRCasFinder
GCAGGCTCGCTGCCCGTTCCTTCCGGTTGCGGCGGCGCGGCCGGTTCTTCGGCGGCGGCTTCGCCATCGGCGGCCGGCGCTTCCGGTTCCGCAGCAGCAGGCTCGCTGCCCGTGCCTTCCGGTTGCGGCGGCG

>NZ_CP023549|1|1|101788-101920|CRISPRCasFinder
GCAGGCTCGCTGCCCGTTCCTTCCGGTTGCGGCGGCG	CGGCCGGTTCTTCGGCGGCGGCTTCGCCATCGGCGGCCGGCGCTTCCGGTTCCGCAGCA
GCAGGCTCGCTGCCCGTGCCTTCCGGTTGCGGCGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023549.1\|WP_096787389.1\|96972_97626_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP023549.1\|WP_096787390.1\|97719_99168_-\|DegQ-family-serine-endoprotease	unknown	unknown	gnl\|CDD\|273938
NZ_CP023549.1\|WP_096787396.1\|104203_105052_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP023549.1\|WP_096787383.1\|89959_91630_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP023549.1\|WP_096787399.1\|107029_108628_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
NZ_CP023549.1\|WP_096787392.1\|100072_101452_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|273593
NZ_CP023549.1\|WP_096787394.1\|102876_103272_-\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|272886
NZ_CP023549.1\|WP_096787384.1\|91666_93340_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP023549.1\|WP_096787400.1\|109142_109817_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP023549.1\|WP_096787387.1\|94914_96486_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP023549.1\|WP_096787388.1\|96588_96900_+\|divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl\|CDD\|376987
NZ_CP023549.1\|WP_096787385.1\|93752_94034_+\|ribbon-helix-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|372613
NZ_CP023549.1\|WP_096787386.1\|94381_94903_+\|Twin-arginine-translocation-pathway-signal	unknown	unknown	unknown
NZ_CP023549.1\|WP_096787391.1\|99401_100076_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP023549.1\|WP_096787398.1\|105954_106962_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182834
NZ_CP023549.1\|WP_096787403.1\|113521_114820_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP023549.1\|WP_096787401.1\|109825_111541_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|274368
NZ_CP023549.1\|WP_096787397.1\|105053_105947_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182833
NZ_CP023549.1\|WP_096787402.1\|111176_113525_-\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NZ_CP023549.1\|WP_096787395.1\|103355_104204_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236898

Protein	Function_ID	Function_description	E-value
NZ_CP023549.1\|WP_096787389.1\|96972_97626_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.000135634
NZ_CP023549.1\|WP_096787390.1\|97719_99168_-\|DegQ-family-serine-endoprotease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.13974e-172
NZ_CP023549.1\|WP_096787396.1\|104203_105052_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.82441e-147
NZ_CP023549.1\|WP_096787383.1\|89959_91630_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	8.34725e-117
NZ_CP023549.1\|WP_096787399.1\|107029_108628_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP023549.1\|WP_096787392.1\|100072_101452_+\|HAMP-domain-containing-protein	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	9.72578e-44
NZ_CP023549.1\|WP_096787394.1\|102876_103272_-\|lactoylglutathione-lyase	gnl\|CDD\|272886	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase. Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other].	4.42421e-25
NZ_CP023549.1\|WP_096787384.1\|91666_93340_-\|HAMP-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	2.16815e-52
NZ_CP023549.1\|WP_096787400.1\|109142_109817_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.45542e-87
NZ_CP023549.1\|WP_096787387.1\|94914_96486_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	5.93154e-66
NZ_CP023549.1\|WP_096787388.1\|96588_96900_+\|divalent-cation-tolerance-protein-CutA	gnl\|CDD\|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	2.63981e-36
NZ_CP023549.1\|WP_096787385.1\|93752_94034_+\|ribbon-helix-helix-domain-containing-protein	gnl\|CDD\|372613	pfam13467, RHH_4, Ribbon-helix-helix domain. This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.	1.07371e-19
NZ_CP023549.1\|WP_096787391.1\|99401_100076_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.04463e-82
NZ_CP023549.1\|WP_096787398.1\|105954_106962_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182834	PRK10914, PRK10914, dipeptide ABC transporter permease DppB.	2.68429e-153
NZ_CP023549.1\|WP_096787403.1\|113521_114820_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	7.88898e-25
NZ_CP023549.1\|WP_096787401.1\|109825_111541_-\|HAMP-domain-containing-protein	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	4.39898e-49
NZ_CP023549.1\|WP_096787397.1\|105053_105947_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182833	PRK10913, PRK10913, dipeptide ABC transporter permease DppC.	2.47378e-145
NZ_CP023549.1\|WP_096787402.1\|111176_113525_-\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
NZ_CP023549.1\|WP_096787395.1\|103355_104204_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236898	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional.	1.38827e-150

>NZ_CP023549.1|WP_096787392.1|100072_101452_+|HAMP-domain-containing-protein
MTEALATRVLRSSSLRLAARLALIFIVATLLAGLVSVPLLTGALKERLRADARQMAESLAATWQVAGLVDLHAQIATNIATTRDFANLYLFIDNSGRIVFGNFNVPRPFTGPRELVSGRDMILPGRNAPEGLGFSAYGLRIPAGFVITARQTSALDEVQAIVRRSVASGLALAILLAVGVAGFLALRAERRIARLSDVLTRAAGGDLSQRVRDGGTDDIGRIAEAVNATLDQLELTVESLRQVSSDVAHDLRTPITRLRTSLEPLMLREDLPEDALGQIGSAVAQADRIVRIFNAVLRIAQIEGGGARPRFASLDLGQLASDLHEMLEPVAEELGHHLAVEAGPVTVQGDRDLLAQAIANLVENAFRHCPPPARIALAVRREGAEAVLTVTDNGPGIPEAERAAVFRRFYRLERSRNTEGSGLGLSLVAAVLRLHGGRVELADAEPGLRVTLHLPVSAG
>NZ_CP023549.1|WP_096787391.1|99401_100076_+|response-regulator-transcription-factor
MKILLAEDDRQTADYLRQGLTAEGYSVDHVPDGREALVQATLQPYDLMVIDRMMPGLDGLSLVKALRSAQVKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLSALARRPALHEGARDLLRVGDLTLDTVRRTVTRGGTEIDLQPREFRLLEHLMRAAGRVQTRTMLLEAVWDFHFDPGTSVVETHISRLRAKIDRPFDKPLLHTVRGAGYMLKA
>NZ_CP023549.1|WP_096787390.1|97719_99168_-|DegQ-family-serine-endoprotease
MPMPTLRTSLRSVLLATTLLAAGVAGTTLPPAPAHAEVPMQGYADLVARISPAVVFIEVTSQSKEASGPAGGPMEEFLRRFGEMNPQFRIPDGPQEERVMHGLGSGFLISEDGIVVTNNHVVENATEMNVKLQDGREFRAEIVGTDPMTDIAVIRLKDARDLPFVEFGDSEKLRVGDAVVAVGNPFGLGGTVTSGIVSAMGRNINSGPYDDYIQTDAAINQGNSGGPLFDTSGKVVGMNTAIFSPSGGSVGIGFSIPADTVREVVAQLQEKGTVSRGWLGVTIQPMTPDIARALGIEGREGALVAEVQQDSPAAEAGIRSGDVISAVNGREVGRHDSLPRLIAAIPNGERAELTIERDGREREVTVTIGELSPDRMQMAAATPEGLGAPLGVGIEPLAPALARQLGLSPDLEGVVITSVDPSGPNADRLMPGDVIEEAAGRPVASPRDLAAAVSESRGKGVLLLKVLRQGSPVYVGAELASS
>NZ_CP023549.1|WP_096787389.1|96972_97626_-|hypothetical-protein
MKRLMMTTCAIVLIGATAASADCASELAALSAEDGSSTTGAVPSLTPEGAASAEASGAAGGGEAIAKDGSLAPLEQPASGSAAGTGGEAAAAGSGTAASGAGSAAGGATTTGTETAGNAGDASAAGAAGGSGEAVAKDGTLAPLEQPSGEGGDASARAMSGADAAAQQAGEPTAAEQAEGAGGSPATREEALQQARAALAAGDEAACMDALAQARGM
>NZ_CP023549.1|WP_096787388.1|96588_96900_+|divalent-cation-tolerance-protein-CutA
MAIGIYTTVASDEDARALARAALDRRLCACVHLEPIESLYRWKGELCEDREVRILFKTIESRRAALEALIAGSHGYETPAIWTVRFDAVDPAYAAWIESEAGG
>NZ_CP023549.1|WP_096787387.1|94914_96486_+|GMC-family-oxidoreductase
MPAPYDLNDDTVVVIIGTGSGGGVLANELAQRGVSVVSLEAGGRYLPEDYINDEWESFGQLAWVDPRTTSGDWRVAKDFSGLPAWIVKAVGGTSIHWAGASLRFQEHEFKALSTYGPVAGANLLDWPIDLAELEPWYDKAEAKLGVTRTGDRAGLPGNNNFKVFEAGARKIGYSEVHTGRMAINSAEGDGRHQCMQTGFCFQGCKWGAKWSAAYTDIPRGEATGLLEVRDHSHALKIEHDAGGRVTGVTYIDREGNSRTQKARIVCVAGNSIESPRLLLNSASDAYPQGLANSSGQVGRNYMRHVTGSVYGIFDKPVKMWRGTTMAGIMQDEARHDPSRGFVGGYELETLSLGLPFMAAFLDPGAWGREFTTALDAYENMAGLWIVGEDMPQETNRITLNPGVRDKFGQPAPDVHFSDHPNDIAMRRHAYRQGTAIYEAMGATRTLPTPPYPSTHNLGTNRMSEDPRLGVVNRWGQSHDIENLFISDGSQFTTGAAENPTLTIVALAIRQADHIASEIAKGVL
>NZ_CP023549.1|WP_096787386.1|94381_94903_+|Twin-arginine-translocation-pathway-signal
MTLTNRSTLTRRELLSRSMAAGATFAIGTGFVAARDAAWALEVNQLKPGTMATLIQMARDIYPHDRLADEFYAVAVKGYDVPESAPMIEEGIAGLDAAARGRGFPSYLETGWERDRVDLLRGMQDGEFFQTIRGGLVTGLYNQKAIWPLFGYEGESFSHGGYIERGFNDISWI
>NZ_CP023549.1|WP_096787385.1|93752_94034_+|ribbon-helix-helix-domain-containing-protein
MCQIFARQDPAGYRPITRRLRLNGQSTSIRLERLFWEILDGIARSEGLSTPAFVSKLHSEVLIAAGEAHNFTSLLRCTCLIELHRQRSAFAAE
>NZ_CP023549.1|WP_096787384.1|91666_93340_-|HAMP-domain-containing-protein
MSIKLKLACAFLAVLLLSGIAAVSAIRGFGIVNRHMTEIVEGEVRQVINAERLQAAQLKLKAAIRDHVINVDAQAMLRIEDEMGDARREQKEALDLLFAGALDAEDRRILDAYVALREKISAINDQAIENSRKNDLDGVRRLLLAPDYLAMQKEREGLVGTFVTRQLGHLDMLKSQAVADARKAVTILVVTFLLAGVVGAVAAIWITVTIGRGLRRALELSQRVAQGDLSGTADARGRDEIAALLASNNAMVLKLREIVGGVTTVARQVASGSAEMAATSEQLSQGANEQASATEEASASVEQMAANIKQAADNAAQTEQMATRAAHDARASGQAVGEAVDAMRAIADRIMVVQEIARQTDLLALNAAVEAARAGEHGRGFAVVASEVRKLAERSQTAAAEISSLSAGTMRAAMGAGEMLGNLVPTIEKTSQLVTDISVASRELAAGAQQVATAIQQLDKVTQQNSSASQELADGATDLSTHAGQLESTVAFFRIDDRPAATVAATPNLQVVRASRPVTVATEAPRKPAGGGFEFSLDGAEDDLDRAFQRNLSQWQK
>NZ_CP023549.1|WP_096787383.1|89959_91630_+|FAD-dependent-oxidoreductase
MLPASSGRIVVSARIVVLGGGFGGMYAARALKRRLGSRAEIELVNAENYFVFQPLLPEVGAGSITPAHAVSPLRFLLRDVFVRKAVVDSVDLERKTVTVFQGIQRRPTEVPYDHLVIALGQTVDLSRMPGLVEHALTMRTLEDARRLRAHVIEQLEHAQITRLPEVKRGALTFCVVGGGFSGIETVGEMKDLIDRSLKFYPDIDPSEVRVMVIEFAQRILGEMSENLADYATRVLRDRGIEVKLGTGVASATGTQLVTTTGEIIDTRTIVATIGNAPSPVVRRMGLPFDRGRIAVERTLAVKGHANVWALGDCALIALKDAPEGPRDFAPPTAQFAVREAQLLAENIAATVEGRAPKPFDYRSKGALASLGARKGVAQVMGLELKGFPAWLLWRFYYLAFLPGLTTRIFVLINWFMDGISPRSVVQLRTQAPPALRYLRYRAGDVIYEVGNRSDGFYTVVTGAVEMTRTDPETGQTQTRIIGPGDHFGERMILGATRRKTAVRAVEDTKVLVMDREEFLKLAESFSAFRDYFAPYMARHGVSWPPEAGTDDPAGGR
>NZ_CP023549.1|WP_096787394.1|102876_103272_-|lactoylglutathione-lyase
MAKAIHSMIRVLDEARSLAFYREAFGLEVAERLDFDSFTLAYLSNPESEFELELTINKGRTDPYALGDGYGHLAVSVADVAAEHARMTDAGLNPRKIVDFAPAGEVIARFFFIADPDGYQIEVLERGGRYK
>NZ_CP023549.1|WP_096787395.1|103355_104204_-|ATP-binding-cassette-domain-containing-protein
MAPVLEARNIVRDYAGSGGMFRRTQPMRALKGVSFSVEQGRTLAVVGESGCGKSTLARIITLIDPATEGELLIDGEAIDIAKQGLPPGLRRKVQIVFQNPYGSLNPRQKVGDMLMEPLILNTKDSAEERREKAMAMLVKVGLAPEHFHRYPHMFSGGQRQRLAIARALMVNPRLLVLDEPVSALDLSVQAQVLNLLADLQEEFDLTYVFISHDLSVVRYIADEVMVMWKGEVVEYGTRDAVFGAPQHDYTRTLFAATPVTDVAAIRARVARRRAAGIGAPAA
>NZ_CP023549.1|WP_096787396.1|104203_105052_-|ABC-transporter-ATP-binding-protein
MALLEIRNLSVSFATSTGRFYAVRGIDLHVHPREVLAIVGESGSGKSVAMLAAMGLLPKTATIEADVMRFDGQDLLTMSDAARREIIGRDISMIFQEPIASLNPCFTVGFQIEEVLRFHLNLGARERRARAVELFRAVGIPDPEARLESYPHQMSGGQCQRVMIAMAIACKPKLLIADEPTTALDVTIQKQILDLLMKLQEETGMGMIMITHDMGVVAETADRVVVMYKGCKMEEAGVCDIFEAPSHPYTRALLSALPELATGDRLPTVADYVDAEATAGGA
>NZ_CP023549.1|WP_096787397.1|105053_105947_-|ABC-transporter-permease-subunit
MTVATPKTSETSRILREFWFYFSENRGAVIGLAVFLALVLIATFAPLIAPHGPTLQNREALLMPPFWQEGGSTTYLLGTDAVGRDILSRLIFGARQSLFIGCVVVSIALTGGIILGLVAGFFGGWVDAVIMRVMDVILAFPSLLLALVMVAILGPGLTNAMIAIAIVLQPHFARLTRAAVMSEKNREYVMAARVAGAGRLRLMFRTILPNCLAPLIVQGTLSFSNAVLDAAALGFLGMGAQPPTPEWGTMLAEAREFILRAWWVVTFPGLAILITVLAINLVGDGLRDALDPKLKRS
>NZ_CP023549.1|WP_096787398.1|105954_106962_-|ABC-transporter-permease-subunit
MIRFLLGKLAYLVPTFIGITIVAFGFVRLLPGDPVLLLAGERGITPERHAELSHQLGFDRPIWVQYFEFVGNLFQGDFGLSLTTKKPVLTEFLTLFPATVELGLVAVTLATVIGIPLGVFAAIKRGSWFDQVSMGAALVGYSMPIFWWGLLLIILFSGILKWTPVSGRIDLLYFFPNGTGFMLYDSLVSGQKGAFLSAVRHLILPAIVLATIPMAVIARQSRSAMLEVLGEDYVRTARAKGMSPFRVVSVHALRNALIPVVTTIGLQVGVVMAGAILTETIFSWPGIGKWMIDSISRRDYPSVQGGLLLMAAVVMVVNLIVDLLYGVINPRIRHA
>NZ_CP023549.1|WP_096787399.1|107029_108628_-|ABC-transporter-substrate-binding-protein
MKFAHLVAASSLALIAAAGANAKTLVYCSEGSPEGFDPAPYTAGTTFDAASQAVYNQLVEFKPGTTEIAPALAERYEISEDGLEYTFHLRPGVKFHTTEFFTPTRDMNADDVIFSFMRQGDTASPWHQYVAGITYEYYSGMEMPTVIKEIQKVDDLTVKFVLTRPEAPFLANLAMDFASILSKEYADKLEAENRKEDLNNAPVGTGPFRFVAYQKDAVIRYQANDDYWGGREKIDDLIFAITPDPAVRMQKLQAGECHIMPYPAPADIEALKADPNLQVMEQPGLNVAYLAYNTTVAPFDNPDVRKALNMAMNKEAILEAVFQGTGQVAKNPIPPTMWSYNDAVEDTAYDPEAAKKLLEEAGVKDLTMEIWAMPVQRPYMPNARRTAELMQEDFAKIGVNVEIVSYEWGEYLKKSTDPSRKGAVILGWTGDNGDPDNFMGVLLGCSATGDGGANRAQWCNKEFDDLIQKAKVTADQAERAKLYEEAQLVFKRENPWATIAHSTVFMPMSKKVSGYVMNPLGKHSFAGVDIAE
>NZ_CP023549.1|WP_096787400.1|109142_109817_-|response-regulator-transcription-factor
MAKILLVEDDPRIANFVTRGLKAEGHALDVAATGQGAMTMMRTAGYALVILDRMLPDFDGVTICRQMRSENIGSRVLMLTARDALGDKIEGLNAGADDYLTKPFAFDELVARIEALLRRAPVTRFDPVLQVADLVLDPTTRQVTRGGRAIALTPKEFGLLRYLMEHSGAVLSRTQILNNNWGYGFDPNSNVVEVYVRYLRTKIDGVDEKPLIHTVRGAGYRLGT
>NZ_CP023549.1|WP_096787401.1|109825_111541_-|HAMP-domain-containing-protein
MRPLPGWPRPVSWSRTAPRRSALRAASSPSPTDASSRIGRRRRPRPMTIRLKIISFQILVTTMLLSVAAVTWYYVHRIDYYFDRNRLAGAQLDSVIRMSAAMNRYSENVAELLLLGRTELDDFNDARNSLEGSLDRLELLIRDEIALLSVPEDRAAEEVELARVAEMRSLYEDIDRRTQRLLLLREEQRQDEAIRIFRDEIEDSLDTTLEVHIGAAIADEEAELRRYESRTNRLERDLEWIISLVTAAAFAVSAIGAFLLARSLKRPIAALESATREIGEGNLAYRLDYRGRDEFASLAAQIDNAASRLEAQRAALLEVQAGLEHEVTRRTGQLEEANARLQQLDHMRMLFLADIGHELRTPLTVLRGEAEIALRGASRTVEEHRDTLGRIVQLCQQMTRLVEDLLFLARAEVDAIRFDMQPLDLDDVLQIVLSEAGVLAGEADVRIVADRSPGGCRARGDAGRLSQAMMIALDNAIKYADPGATVRVSLSCTERGAVFVVSNPGPEIPAAELPFVFSRFYRARQAAGHGRSGTGLGLSIAKWIVEGHGGRIEIASADHQTELRIHLPLLS
>NZ_CP023549.1|WP_096787402.1|111176_113525_-|peptidase-domain-containing-ABC-transporter
MSVTEGLQFGWRRRLPLILQTEAAECGLASLAMVAGYYRRSTDPAELRRRFGFSLKGATLRDVIAVADRIGLASRPLRLEMDELHLLRTPAVLHWDLNHFVVLKAVGRGGITIHDPADGIRRLPMAEVSRHFTGVALELVPTGGFEPAAAPPRIRIRALLGQITGLRRALGHLLLLALAIEIFALIAPLFLSLTIDNAIVSADRSLLTTLALAFGLLLLLQTGVTALRSWMMITLGASLKVQARANLFSHLLDLPASYFETRHVADVMSRFESQDTILQALTRDLVVAILDGLMCVLTLVLMFVLAPVLAAVALAGAGLYGALRWAAYAPLRQASAEAIAWEARRDSHFLESLRGMKTVKLMGGQADRRARWLNLLVETVNRQLVTQRLDLLFRTANLLLLGLLGIGIVYLAARMILANSFSVGLLVAFLAYKDLFLRRISGLIDTVVDLRMLGLHAERLADIALTPPEPRGDPHPVGPARPVAIELCSVSFRYSPGDPFVLRDVSLRVAPGEWVSLAGPSGCGKTTLLKLMAGLLEPTEGTILIDGTPMARLGLDRWRGMIGVVMQDDTLFAGSIADNIAFFVPNPDRDRIEDCARLAAVHDDILAMPMGYGTLIGDMGTVLSGGQKQRILLARAIYRAPGLLLLDEATSHLDVARESAVNAALARLAPTRIVVAHRPETIRAARRVITFANGRIQSDRPQETPQTHDDPPEDHQLPDPGHDHAAQRGGGHMVLRPQDRLLLRPEPAGRGAAGQRDPHVGGDEPLFRERGGTAAAGADRTG
>NZ_CP023549.1|WP_096787403.1|113521_114820_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MWKTCSVSRAPSPLFRPEALAERQHGWLGTVLLVPRLSHSVLTAFAALIVGGVIAVIAFGEFTRKVRLPGWLAPQQGLLQVVTPQAGVLVRVAVEEGQEVAAGDVLAVLSGERRSGLGETRQEVLRFLREHRDILVAERDDQRALFARQAGSQQARLAVIDAEARSLEVEFALQRRRLALAEATALRLRDLRGRGLSTEEGVQRAEDAAFDQALALQALERTRAGVNRVRVELAAEIAELPLRERLQLAETGRAIAQLDQDLAEAEAARETLVTAPRAGTVTALRAAAGDAVDGSAALMTLIPAGTALQARLYGPSRDIGFVEPGQRVLIRYDAFPHQTFGQYEGLVRNVSRATVGAGELAEAAGPLVELGAAGQPVYRITVDLQAQGASAYGRMATLQPGMTLQADIQIETRRLWQWIVDPLRTLRDGDRA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023549_1	1.1\|101825\|59\|NZ_CP023549\|CRISPRCasFinder	101825-101883	59	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	101825-101883	0	1.0

1. spacer 1.1|101825|59|NZ_CP023549|CRISPRCasFinder matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cggccggttcttcggcggcggcttcgccatcggcggccggcgcttccggttccgcagca	CRISPR spacer
cggccggttcttcggcggcggcttcgccatcggcggccggcgcttccggttccgcagca	Protospacer
***********************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

791125 : 835273

Catovirus(12.5%)

tRNA,integrase,transposase

attL 834359:834384|attR 844408:844433

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096787893.1\|791125_792610_+\|tRNA	histidine--tRNA ligase	A0A1V0S921	Catovirus	6.5e-30	26.7
WP_096787894.1\|792606_793704_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
WP_096787895.1\|793700_794408_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_096787896.1\|794400_794832_-	DUF1489 domain-containing protein	NA	NA	NA	NA
WP_096787897.1\|794965_797233_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	M4QT32	Loktanella_phage	2.1e-282	63.7
WP_096787898.1\|797546_797927_+	hypothetical protein	NA	NA	NA	NA
WP_157764678.1\|797986_798433_+	hypothetical protein	NA	NA	NA	NA
WP_157764679.1\|798618_800931_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_157764680.1\|800927_801614_-	hypothetical protein	NA	NA	NA	NA
WP_096787901.1\|802080_802320_-	hypothetical protein	NA	NA	NA	NA
WP_157764681.1\|802247_802502_-	hypothetical protein	NA	NA	NA	NA
WP_157764682.1\|802736_803015_+	hypothetical protein	NA	NA	NA	NA
WP_096787904.1\|804374_805865_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA
WP_096787905.1\|806313_807558_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_096787906.1\|807544_808021_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_096787907.1\|808589_808817_-	hypothetical protein	NA	NA	NA	NA
WP_096787908.1\|809579_810566_+	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_096787909.1\|810763_811819_-	radical SAM protein	K0NVW2	Escherichia_virus	3.1e-34	31.3
WP_157764683.1\|811802_812201_-	hypothetical protein	NA	NA	NA	NA
WP_157764684.1\|812190_812556_-	hypothetical protein	NA	NA	NA	NA
WP_096787912.1\|812552_815219_-	SMEK domain-containing protein	NA	NA	NA	NA
WP_096787913.1\|816274_816751_+	hypothetical protein	NA	NA	NA	NA
WP_157764584.1\|817169_818636_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_096784779.1\|818632_819496_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.7e-25	32.6
WP_096787914.1\|819614_820372_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.1e-08	37.2
WP_096787915.1\|820434_821778_-	amidohydrolase family protein	NA	NA	NA	NA
WP_096787916.1\|822533_827858_-	AAA family ATPase	F2NZ48	Diadromus_pulchellus_ascovirus	6.0e-25	29.4
WP_096787917.1\|827854_828259_-	hypothetical protein	NA	NA	NA	NA
WP_096787918.1\|828282_829935_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_157764685.1\|829816_830458_-	hypothetical protein	NA	NA	NA	NA
WP_096787919.1\|830944_831979_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_157764686.1\|832497_832887_+	hypothetical protein	NA	NA	NA	NA
WP_096787920.1\|833976_834909_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.5e-59	42.4
834359:834384	attL	NA	NA	NA	NA
WP_096787921.1\|834982_835273_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J6I5	uncultured_Caudovirales_phage	4.1e-05	32.2
WP_096787921.1\|834982_835273_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J6I5	uncultured_Caudovirales_phage	4.1e-05	32.2
844408:844433	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP023548

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023548_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023548_1

59538-59621

Orphan

Consensus_repeat	Method
GCGTCACGGCACATCCGGGGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023548_1

>merge|NZ_CP023548|1|59538-59621|CRISPRCasFinder
GCGTCACGGCACATCCGGGGACTTCGCCGGATGCCGATCTGCGCGCGCATGCGGTCGTAAAGCGTCACGGCGCATCCGGGGACT

>NZ_CP023548|1|1|59538-59621|CRISPRCasFinder
GCGTCACGGCACATCCGGGGACT	TCGCCGGATGCCGATCTGCGCGCGCATGCGGTCGTAAA
GCGTCACGGCGCATCCGGGGACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023548.1\|WP_096784274.1\|58254_59508_+\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|372592
NZ_CP023548.1\|WP_096784278.1\|66713_66959_+\|DUF4170-domain-containing-protein	unknown	unknown	gnl\|CDD\|372720
NZ_CP023548.1\|WP_096784280.1\|68161_69154_+\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NZ_CP023548.1\|WP_096784281.1\|69223_70369_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|224717
NZ_CP023548.1\|WP_096784279.1\|66971_68162_+\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|224436
NZ_CP023548.1\|WP_096784269.1\|53241_54051_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP023548.1\|WP_096784270.1\|53974_54307_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023548.1\|WP_096787109.1\|65897_66638_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NZ_CP023548.1\|WP_096787108.1\|59680_62467_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235553
NZ_CP023548.1\|WP_096784273.1\|55926_58179_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP023548.1\|WP_096784268.1\|52362_53187_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP023548.1\|WP_096784271.1\|54320_55463_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_CP023548.1\|WP_096784275.1\|62484_64089_-\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458
NZ_CP023548.1\|WP_096784266.1\|51128_51470_+\|DUF2794-domain-containing-protein	unknown	unknown	gnl\|CDD\|371325
NZ_CP023548.1\|WP_096784276.1\|64218_64494_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288556
NZ_CP023548.1\|WP_096784282.1\|70365_71052_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372611
NZ_CP023548.1\|WP_096784267.1\|51470_52280_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP023548.1\|WP_096784272.1\|55459_55876_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP023548.1\|WP_096784265.1\|49889_50879_+\|asparaginase	unknown	unknown	gnl\|CDD\|377601
NZ_CP023548.1\|WP_096784277.1\|64698_65829_+\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260

Protein	Function_ID	Function_description	E-value
NZ_CP023548.1\|WP_096784274.1\|58254_59508_+\|lytic-murein-transglycosylase	gnl\|CDD\|372592	pfam13406, SLT_2, Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.	6.7368e-147
NZ_CP023548.1\|WP_096784278.1\|66713_66959_+\|DUF4170-domain-containing-protein	gnl\|CDD\|372720	pfam13773, DUF4170, Domain of unknown function (DUF4170).	2.14148e-40
NZ_CP023548.1\|WP_096784280.1\|68161_69154_+\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	3.97146e-115
NZ_CP023548.1\|WP_096784281.1\|69223_70369_-\|CoA-transferase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	7.07668e-157
NZ_CP023548.1\|WP_096784279.1\|66971_68162_+\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|224436	COG1519, KdtA, 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane].	1.18224e-47
NZ_CP023548.1\|WP_096784275.1\|62484_64089_-\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	4.96449e-78
NZ_CP023548.1\|WP_096784271.1\|54320_55463_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP023548.1\|WP_096784269.1\|53241_54051_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	4.2131e-39
NZ_CP023548.1\|WP_096787109.1\|65897_66638_+\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	9.45212e-58
NZ_CP023548.1\|WP_096787108.1\|59680_62467_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_CP023548.1\|WP_096784273.1\|55926_58179_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP023548.1\|WP_096784268.1\|52362_53187_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_CP023548.1\|WP_096784277.1\|64698_65829_+\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP023548.1\|WP_096784266.1\|51128_51470_+\|DUF2794-domain-containing-protein	gnl\|CDD\|371325	pfam10984, DUF2794, Protein of unknown function (DUF2794). This is a bacterial family of proteins with unknown function.	5.98355e-49
NZ_CP023548.1\|WP_096784276.1\|64218_64494_-\|hypothetical-protein	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	8.34943e-21
NZ_CP023548.1\|WP_096784282.1\|70365_71052_-\|DsbA-family-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	7.76209e-55
NZ_CP023548.1\|WP_096784267.1\|51470_52280_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	3.30676e-58
NZ_CP023548.1\|WP_096784272.1\|55459_55876_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	1.75896e-27
NZ_CP023548.1\|WP_096784265.1\|49889_50879_+\|asparaginase	gnl\|CDD\|377601	pfam06089, Asparaginase_II, L-asparaginase II. This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (EC:3.5.1.1) catalyzes the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source.	1.15672e-140

>NZ_CP023548.1|WP_096784274.1|58254_59508_+|lytic-murein-transglycosylase
MRAVLLGLGLVAAAGVAAAEPLAVPQPAAMQGEVAVPDPNAAAQAGLEEWVTGFRPRALAQGIRPETFERAFRGIRYDADAVARDRNQAEFNRTLWDYLDSAVSETRIANGRVALAQHGELLARIEARFGVPKEIVVAVWGMETSYGTRRGDHPLVGALATLAHDGRRAAFFEEQLIAALKILDTGDVRPEAMTGSWAGAMGHTQFMPTSYLAHAVDFTGDGRRDIWSDDPSDALASTAAYLARSGWRRGEPWGVEVRLPRGFDFSQSGKGLRQPAARWQALGLETVDGAPLPAGEAALLLPAGAQGAAFLIYPNFRAIARYNPADAYVIGVGHLADRLRGGPAIAGGWPRGDRALAAAERMELQRLLTAAGHDTGGVDGMIGPNTLAALRAWQKAAGLVADGYANEAILNRLRKGA
>NZ_CP023548.1|WP_096784273.1|55926_58179_+|ribonuclease-R
MDQIPSRSQILDWIAENPTLTAKRDIARAFGIKGSAARIELKRLLREMEADGALDKRKRTYTAQGELPPVSVLQVLAPDAQGDLFARPLEWRGEDEPPRILLVQKKGDPALGEGERILARLTPVEGEDHSHEARLIRRLGGSAHKILGIFRAGSDGGRIVPIDKGEDKEWRVARDLTAGARDGELVEAEQTGPKRLGLPQARVVARLGDPMGPRAVSIIAIHQHGIPDAFPDAVLAEAERAEPAPLGEREDLRHLPFVTIDPVDARDRDDAVLAEPDPDPQNPGGHILWVAIADVAHYVRPGSALDREARKRGNSTYFPDRVVPMLPDALSGDLCSLHEDVDRPCMAVRMRLSAQGEKISHRFTRGMMRSRASLNYAQVQAAQDGQPDEKTAPLLDEIIRPLYAAYAATKHARALRQPLDLDLPERKIELSDEGKVLSVAFRDRFDAHRLIEEFMILANVAAAEELTRLRRPLLFRVHEEPSPEKLDALREVAEASGFTLAKGQVLKTSHLNRLLAQAEGTEFDELLNITTLRSMTQAYYHPENFGHFGLSLRSYAHFTSPIRRYSDLIVHRALILGHGWGNDGLSPQDIETLEETAKLISDTERRSMAAERDTTDRYLAAWLSDRVGAEFTGRISGVQRFGLFVKLDESGADGLIPIRSVGREFFHYDPDSQTLMGADTGTVLGIGQRVTVRLAEAVPMTGGLMLELLTVEDRGLPGPKPRRGRSKPRKPGRDAARTEKAKRRVVRTRR
>NZ_CP023548.1|WP_096784272.1|55459_55876_+|GNAT-family-N-acetyltransferase
MRIARTDDLAACRALRRTVFIEEQGVPEADELDDLDGEAIHLLASIDGTAVGTARLLLRGDIGKIGRVCVLARCRGAGIGAALIRAAVEELRHQPGLRQVKLGSQSHATGFYEKLGFRPVGEGYMDAGIPHRDMVLDL
>NZ_CP023548.1|WP_096784271.1|54320_55463_+|succinyl-diaminopimelate-desuccinylase
MPVDPVALTAALIRCPSVTPAEGGALRLLEDLLTEAGFSCTRVDRNGTPNLFARWGRKGANRTFGFNGHTDVVPVGDAAAWTRDPFGGEIADGWLWGRGATDMKSGVSAFVAAAVDFVRETPPDGALILTLTGDEEGDATDGTVALLDWMATEGEAMSVCLVGEPTCPERLGEMMKIGRRGSMTAFFTARGVQGHSAYPHRAKNPVAVMARLVDRLSSQPLDAGTAHFDPSTLAVTTIDTGNPATNVIPALCRATVNIRFNDLHSGASLNDWLTAEAAAVQAETGVEIGLTVKISGESFLTPPGDLSDLVARAVEAETGLRPEPSTSGGTSDARFVKAHCPVVEFGLVGKTMHQVDERVEVAQIPALKAIYGRILKDYFA
>NZ_CP023548.1|WP_096784270.1|53974_54307_+|hypothetical-protein
MTEEKKPKRPQQVYTLVIEVGRKAGDGLPKGATGAALMCYASGVDEAEAVRETVALLKTADMAPLDVSGYGTLDERLANGDEIDDEERALMQRALDENSVVVAQVTPFYD
>NZ_CP023548.1|WP_096784269.1|53241_54051_+|DUF421-domain-containing-protein
MDEPAVPFDLVRMFLGDDPPLFLLEILFRTLVIYVWTLLLLRWVGGRSIAQLSIVEFLLVIALGSAVGDALFYPEVPLVHAMLVVAAVVGLDKLLDALIRRFRTVKIAVDGRAVAVMKDGVILSAGMAARRIGTPELLALLRMQGIENLGEVRAAFIEADGQLSVFRTDPPRPGLAIVPPFEVAPPVPPAPGERACCMNCGLLLAAEPAEAPCPACGRRDRARVALARSLKSCEPVPEPEGEVPHDGREEAEAAAAGLHAGHRGWSQGR
>NZ_CP023548.1|WP_096784268.1|52362_53187_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MTSAALETAIEAAWEVRDTITPDTKGEVRDAVEATLEALDKGELRVAEKRGADWHVNQWAKKAVLLGFRLHDMELHDGGPQGGGWWDKVDSKFAGWRKKDWRKAGFRAVPNCIVRRSAYIGKGVVLMPSFVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRETGEVMYGEVPAGSVVVAGSMPSKGGINLYCAVIVKKVDAQTRSKTSINELLRD
>NZ_CP023548.1|WP_096784267.1|51470_52280_-|TIGR00730-family-Rossman-fold-protein
MKDDRRHPFRDSSQDMETAHRVPDTPQSRAPAYRLAFSDVEFLMRDELRPVRLQLELMKPQIVMDERGIVSTVVMFGGARIPSPERKETASHPGLAELAPYYDEARKFARAVTERSMETYGREFVIVTGGGPGVMEAGNLGAHEAGGQSIGLNIVLPHEQAPNAYVTPDLSFNFHYFAIRKMHFLMRARAVVVFPGGFGTLDEMFESLTLIQTKRMKPIPFLLFGKAFWEKIINWQALAEIGTISPEDLRLFRFVETADEALEALDEWD
>NZ_CP023548.1|WP_096784266.1|51128_51470_+|DUF2794-domain-containing-protein
MTVQPPIPFAPHSLDQVRFDRQELGLILALYGRMVAMGEWRDYGISHLQDMAVFSVFRRTAESPLYRIEKRPRLRTRQGMFAVVGMDGQILRRGHDLAQVLRVLERKLIRPVE
>NZ_CP023548.1|WP_096784265.1|49889_50879_+|asparaginase
MAEPVRMVELWRGGLLESWHVGHAVIWSDDGGLVEAWGDPDTVIFPRSSCKMIQALPLLESGAGEALSTERLALACASHQGAALHVGLVRRWLLDIGMDEADLRCGAHAPADIEERDRLIRAWERPCQIHNNCSGKHAGFLMLARHLHAGPEYVAPDHPVQLAVRSAFEEVTGETSPGFGIDGCSAPNFATTVAGLARAMAFFAGAVEGSGARARAAARLTEAMIAHPDLVAGEGRACTELMRAMRGRAAIKTGAEAVFVAIVPGRRLGIALKIVDGSTRASEAAIAALLVRLGLLDQDHPATLKRLDAVQTNWRGFETGILRAAPGFP
>NZ_CP023548.1|WP_096787108.1|59680_62467_+|DNA-polymerase-III-subunit-alpha
MPFVELSATSNFTFLTGASHPEELMRRAADLGLPALAIADENSVAGIVRAFCEAKEIARERGTAPRLIPAARVVTREGFTVTLLPRDRAGWGRLCRLLTKGRRAAKKGGCDLGLADLLDHAEGQEMLLHPPARPTAEWRDMAGRLACRCPGQVALILAPTYAGQDAARFARLAELARRLGVPTVASGLPMMHHGSRRRLADVLTAIRLGCRVDQLGRRALPNGEQRIRSEAEMLRLYRGHEDAIHRSAEIAARLTFCLGQLRYEYPSEIAGGESPADRLARLTAEGLDWRYPAGVPDRVHRQAAHELALIAKLRYEPYFLTVHDIVRFARNRGILCQGRGSAANSIVCYALGVTSVSPEIGTMVFERFVSEARNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVIHYRGKRAVREVGRAMGLSDDTLAAMSSQIWGWGGPGSLTEQRLREIGLDPADRRLWLTLQLIDEIQGFPRHLSQHVGGFVITEGRLDELVPIENAAMEDRTVISWDKDDIDALGILKVDVLALGMLTCIRKAFELIETHHGIRHTLATLPDQDSRTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVIQVAIIRPGPIQGDMVHPYIRRRNREEEVSFPSDELGRVLGKTLGVPLFQEQAMQIAIIGAGFTPDEADRLRRALATFKKHGNVTALKDRFMEGMRANGYDEDFATRCFSQIEGFGSYGFPESHAASFAFLVYASAWIKCHHPGIFACALLNSQPMGFYAPAQIVRDARAHGVVVLPPCINASRWDNIMEPDGRGRLALRLGFRQIKGVAEEEALWIAAARGNGYRAVEDVWRRAGVAPATVTRLAEADCFAALGLSRREAMWQARALSGDKPLPLFAGDLDGEGIVEPAVALAEMTLGQQVVEDYVAFRLTLRAHPMALLREMV
>NZ_CP023548.1|WP_096784275.1|62484_64089_-|DNA-polymerase-Y-family-protein
MAQRRILSLWFPRLGVERVLRRRNDALPPPLAVVEERGGAQVLTSVSVEAEALGLGPGLPLRDATAICPVLETCAEDAAAEAAFLTVLRRWAGKFSPWIAEEPPAGLTVDLTGCAHLFGGEAALLGVVEADCAALGLSVRAAIADTPGAAWALARHAGRQATAARSGDAIEQEAHATRSRAAKRRMLPPPPGGTLGMIAATGHMRQALGPLPVAALRLPEETALGLTRLGLRRVADLMDLPRATLARRFGLEVLRRLDQALGLEPEPVSPASAPLHFAVRLTLPEPIGLLADVEAGLDRLLPPLCARLKERGRGARRVRLQAFRTDGQVPTVEVGLARPADSPDRIRPLLALKLPGIDAGFGIDTLRLSAVETEPMLARPHRGPAEAAGRADALGDLIGRLGARLGMEAVTRLHPAESHIPAKSALILTAAWSEPAGPWPDPSAPRPLVLFPPEPVEADGSPPTRLRWRRRERRVVRAEGPERILPEWWLDDPDWRSGPRDYWRLELDEGERVWMFEAMGGLLSGGWWFEGEMA
>NZ_CP023548.1|WP_096784276.1|64218_64494_-|hypothetical-protein
MRRTLILLTALASLSACGKDKETEIVLPTDSCGAVRLKGLVGQPVEVFDSIRFSQPVRIVRPGDVVTMDFSPARLTVETTATDRISRLSCG
>NZ_CP023548.1|WP_096784277.1|64698_65829_+|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MRTKAAVAVAAGQPLEIMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGLFPAILGHEGAGVVVEVGPGVTSVKPGDHVIPLYTPECRQCPSCLSQKTNLCTSIRATQGQGLMPDGTSRFSMLDGTPILHYMGCSTFSNYTVLPEIAVAKVREDAPFDKICYIGCGVTTGIGAVINTAKVEIGAKAVVFGLGGIGLNVIQGLRLAGADMIIGVDLNNAKKEWGERFGMTHFVNPTEIEGDIVAHLVNMTKTPFDQIGGADYTFDCTGNVKVMRQALEACHRGWGQSIVIGVAPAGAEIQTRPFQLVTGRVWKGSAFGGARGRTDVPRIVDWYMEGKIQIDPMITHTLSLDEINRGFDLMHAGESIRSVVVY
>NZ_CP023548.1|WP_096787109.1|65897_66638_+|NYN-domain-containing-protein
MPDTRAPRLCVLIDADNVPANYAEAIFEEIAALGEASVRRIYGDWSAMRLNAWAKKVAALGLVADQQFSNTKGKNASDIGLVISAMDFLHSGLFDGFVLVSSDSDFTRLAARIREQGLDVYGIGEKKTPEAFRMACKRFIYVENLGGDEPAPVARPIGEPQPAPAPRGQKEEPMKAIPLIVAAMRAIDPEGEWYTLGQIGQFITQANPDFDTRTYGSAKLSDLIKKISRFEVKPGPGGQLQARDLA
>NZ_CP023548.1|WP_096784278.1|66713_66959_+|DUF4170-domain-containing-protein
MAQRLHLVFGGELVSPTKNVFKDVKAIHIVGMFPDYASAYSAWKAEAQRTVDDAHVRYFIAHIHRLRDEEQPASATEELGS
>NZ_CP023548.1|WP_096784279.1|66971_68162_+|3-deoxy-D-manno-octulosonic-acid-transferase
MANSFGLPLGTASRREAAEGPVRPPRPLGKLVWLHAPSRDAARPMAELGRRIILDEGFPVLLTTDAQVSSGGILIVQPPPADTQSAVAAFLDHWKPDAAFMSEGELRPTLIHEASARSIPLAMIDGVAPRVLPGRESWWPGQMRSLLSRFRHVFTVDEAAARAFRRAGSPPAITQVAGRLEEGSLALPCTEAERAALARLLATRQVWLAAGLPEAEEAAVIAAHHAALKLAHRLLLIIVPQDPERAGPLATILQEREGWKVARRSADEEPDAETEVFVADGAAELGLWYRLAPVTWLGGSLTGGCIRDPMEAASLGSAIVHGPRSGIHGVTLSRLVAARASMPVNSARGLAEALADLLAPDRVARLAHAGWAVASDGTEVTDRFVALAGRLVDRDP
>NZ_CP023548.1|WP_096784280.1|68161_69154_+|tetraacyldisaccharide-4'-kinase
MRPPGFWFTPPDRPAWPARLLAPLGRLYAAATARRLRAAGHRASVPVICIGNLNAGGTGKTPATIALMQRLQARGIEAHVVSRGHGGQLEGPVRVDPRRHRAADVGDEPLLIAAFGPAWIARDRAAGVRAAEAAGARVILLDDGFQNPSVVKDLSLVVVDAAVGFGNGRCLPAGPLREPVAVGLARADLILSIGDEAAQRRFAGDWPDLPVPRLTAQLRTLRMGMDWQGARVLAFAGIGRPEKFFASLRAEGAELVRAEALDDHQPLGEALMRRLEIEAMALGAQLVTTEKDAVRLPASFRPKVLTLPVRLEPDDWAPLDAALDRLGLAA
>NZ_CP023548.1|WP_096784281.1|69223_70369_-|CoA-transferase
MSAPLAGVRVVELARILAGPWAGQVLADLGADVVKVEAPEGDDTRRWGPPFIEREGDRSAAYFHAANRGKRSVTADFRTAEGQETVRRLVTGADVVIENFKVGGLAKYRLDWDSLREVNPRLVYCSITGFGQTGPYAHRAGYDFIIQGMAGLMSVTGEAEGQPQKVGVAVTDIFTGIYAATAILAALHQRATTGRGQQIDMALMDVAAGIMANQAMNYLATGVAPRKMGNAHPNLAPYAVFDCADGWIIIATGNDAQYRRLCALLGLPALATAPAFLTNADRVTNRAALTEALTAVTRGWRKADLLAACEAEGVPAGPINDMTGVFADPQILHRGMRIEVAGVPGVRSPFVFSDAELALGRPAPRLGEHDAEVAAELAAQG
>NZ_CP023548.1|WP_096784282.1|70365_71052_-|DsbA-family-protein
MKRHGMVKKLGLAALALTTVAGFALWNSGRDAGQTLLPPMAAGAQEAATSEAQPAVADMVMGAEDAPVTIVEYASFTCPHCATFENEVLAPLKRDYIDTGKVRFVFREVYFDRYGLWAAMIARCGGEMRYFGIADMIFDQQQEWVADDPQQVAANLRRIGKTAGLDDAALDACMNDQAKAEAMVAAFQKNSQADDITATPSLIVNGTKHSNMGYEELRKIIDAELAKG

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Crispr_ID: NZ_CP023548_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023548_2

2419115-2419213

Orphan

Consensus_repeat	Method
GGCCCGCGTGCGCGGGGACGGCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023548_2

>merge|NZ_CP023548|2|2419115-2419213|CRISPRCasFinder
GGCCCGCGTGCGCGGGGACGGCAGGTCCCACCTGCCTCAAGGCTCACGGACAATGAGCGGGCGCTGCGTGCGACCGGCCGCGTGCGCGGGGACGGCAGG

>NZ_CP023548|2|2|2419115-2419213|CRISPRCasFinder
GGCCCGCGTGCGCGGGGACGGCAGG	TCCCACCTGCCTCAAGGCTCACGGACAATGAGCGGGCGCTGCGTGCGAC
CGGCCGCGTGCGCGGGGACGGCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023548.1\|WP_096786327.1\|2411581_2412169_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|183573
NZ_CP023548.1\|WP_096786339.1\|2425771_2425981_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224726
NZ_CP023548.1\|WP_096786328.1\|2413121_2413523_+\|DUF983-domain-containing-protein	unknown	unknown	gnl\|CDD\|180334
NZ_CP023548.1\|WP_096787245.1\|2412271_2412676_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|238008
NZ_CP023548.1\|WP_096786343.1\|2428938_2429418_-\|YIP1-family-protein	unknown	unknown	unknown
NZ_CP023548.1\|WP_096786333.1\|2416626_2417238_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226918
NZ_CP023548.1\|WP_096786340.1\|2426164_2427100_+\|cobalamin-biosynthesis-protein-CobD	unknown	unknown	gnl\|CDD\|377002
NZ_CP023548.1\|WP_096786334.1\|2417314_2419033_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237029
NZ_CP023548.1\|WP_096786329.1\|2413491_2414178_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239518
NZ_CP023548.1\|WP_096786335.1\|2419231_2421730_-\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223104
NZ_CP023548.1\|WP_096786338.1\|2423907_2425767_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP023548.1\|WP_096786337.1\|2422467_2423799_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
NZ_CP023548.1\|WP_096786336.1\|2421805_2422135_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023548.1\|WP_096786341.1\|2427133_2428354_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|99746
NZ_CP023548.1\|WP_096786331.1\|2414740_2415259_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP023548.1\|WP_096786344.1\|2429418_2430702_-\|SufD-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|376550
NZ_CP023548.1\|WP_096786332.1\|2415435_2416476_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381320
NZ_CP023548.1\|WP_096786342.1\|2428363_2428942_-\|YIP1-family-protein	unknown	unknown	gnl\|CDD\|377418
NZ_CP023548.1\|WP_096786330.1\|2414249_2414753_-\|lipocalin	unknown	unknown	gnl\|CDD\|381213
NZ_CP023548.1\|WP_096786326.1\|2411223_2411580_-\|dihydroorotate-dehydrogenase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023548.1\|WP_096786327.1\|2411581_2412169_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|183573	PRK12524, PRK12524, RNA polymerase sigma factor; Provisional.	1.79956e-98
NZ_CP023548.1\|WP_096786339.1\|2425771_2425981_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224726	COG1813, COG1813, Predicted transcription factor, homolog of eukaryotic MBF1 [Transcription].	0.000577768
NZ_CP023548.1\|WP_096786328.1\|2413121_2413523_+\|DUF983-domain-containing-protein	gnl\|CDD\|180334	PRK05978, PRK05978, hypothetical protein; Provisional.	1.47652e-44
NZ_CP023548.1\|WP_096787245.1\|2412271_2412676_-\|histidine-kinase	gnl\|CDD\|238008	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.	7.15923e-08
NZ_CP023548.1\|WP_096786333.1\|2416626_2417238_+\|hypothetical-protein	gnl\|CDD\|226918	COG4544, COG4544, Uncharacterized conserved protein [Function unknown].	3.49521e-13
NZ_CP023548.1\|WP_096786340.1\|2426164_2427100_+\|cobalamin-biosynthesis-protein-CobD	gnl\|CDD\|377002	pfam03186, CobD_Cbib, CobD/Cbib protein. This family includes CobD proteins from a number of bacteria, in Salmonella this protein is called Cbib. Salmonella CobD is a different protein. This protein is involved in cobalamin biosynthesis and is probably an enzyme responsible for the conversion of adenosylcobyric acid to adenosylcobinamide or adenosylcobinamide phosphate.	1.38833e-117
NZ_CP023548.1\|WP_096786334.1\|2417314_2419033_+\|methionine--tRNA-ligase	gnl\|CDD\|237029	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP023548.1\|WP_096786329.1\|2413491_2414178_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	2.95649e-05
NZ_CP023548.1\|WP_096786335.1\|2419231_2421730_-\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.1476e-56
NZ_CP023548.1\|WP_096786338.1\|2423907_2425767_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.8787e-94
NZ_CP023548.1\|WP_096786337.1\|2422467_2423799_-\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	9.69779e-17
NZ_CP023548.1\|WP_096786341.1\|2427133_2428354_-\|cysteine-desulfurase	gnl\|CDD\|99746	cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.	0
NZ_CP023548.1\|WP_096786331.1\|2414740_2415259_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	5.32056e-06
NZ_CP023548.1\|WP_096786344.1\|2429418_2430702_-\|SufD-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|376550	pfam01458, UPF0051, Uncharacterized protein family (UPF0051).	8.82426e-74
NZ_CP023548.1\|WP_096786332.1\|2415435_2416476_-\|aldo/keto-reductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	1.39489e-145
NZ_CP023548.1\|WP_096786342.1\|2428363_2428942_-\|YIP1-family-protein	gnl\|CDD\|377418	pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases.	9.98001e-05
NZ_CP023548.1\|WP_096786330.1\|2414249_2414753_-\|lipocalin	gnl\|CDD\|381213	cd19438, lipocalin_Blc-like, bacterial lipocalin Blc, Arabidopsis thaliana temperature-induced lipocalin-1, and similar proteins. Escherichia coli bacterial lipocalin (Blc, also known as YjeL) is an outer membrane lipoprotein involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Blc has a binding preference for lysophospholipids. This group includes eukaryotic lipocalins such as Arabidopsis thaliana temperature-induced lipocalin-1 (TIL) which is involved in thermotolerance, oxidative, salt, drought and high light stress tolerance, and is needed for seed longevity by ensuring polyunsaturated lipids integrity. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	4.12899e-09

>NZ_CP023548.1|WP_096786334.1|2417314_2419033_+|methionine--tRNA-ligase
MARILITSAIPYINGIKHLGNLVGSQLPADLYARYARARGHEVMFICATDEHGTPAELAAAKAGKPVEVYCAEMHEIQKEIAAGFRLSFDHFGRSSSQRNHKLTQHFAGKLAENGFIEEVSEKQVFSVADNRFLPDRYIEGTCPNCGYEKARGDQCENCTKQLDPTDLINPRSAISGSTDLEVRETKHLYLKQRALKDEIEAWIDSKTDWPVLTTSIAKKWLHDGDGLQDRGITRDLHWGVPVRKGDAPWPGMEGKVFYVWFDAPIEYIAGTAEWADANGKLDADWERWWRTDKGAEDVRYVQFMGKDNVPFHTLSFPATIMGSREPWKLVDYIKSFNYLNYDGGQFSTSQGRGVFMDQALSILPADYWRWWLLSHAPENSDSEFTWENFQASVNKDLADVLGNLVSRVTKFCRSKFGETVPEAGEIGEREQQLIAELQERLAAYEACMEAMEVRKAATELRALWVAGNEYLQSAAPWTVVKTDPERAQAMIRLALNLIRLYAVLSRPFIPDAAASTMASLQCEDWSWPTDVAQALTVLPPGHAFTTPDVLFRKITDEERVEWQTRFAGVRT
>NZ_CP023548.1|WP_096786333.1|2416626_2417238_+|hypothetical-protein
MTTQLLDRHGTRVRPMQRLVGDLTLSRMRVHEFCGPARRLLAVLLMAAGQGPVVWIHPGWRPERLYPDGMRDFAEPGRLILVRARRPEDLLWSMEEALRSGAAPLVVAELPEPPPLTPVRRLHLAAEAGAETAAALGAEPPLGVILTPETGGAAGIETRWHCRPWPEGRWRLDRLRARMEPPAGWILRRSRSGVEIEGRHTAQ
>NZ_CP023548.1|WP_096786332.1|2415435_2416476_-|aldo/keto-reductase
MRLIPLGRTGLTVSEFCLGTMTWGSQNTEAEAHAQIDLALDHGVTFIDTAEMYPTNPVAAGTVGTTETIIGRWLAARGGRERIVLASKITGEGSRAVRGGEPVTPDSLRRALEGSLSRLGTDYLDLYQIHWPNRGSYHFRKMWDYVPPRGGNAVREEMLALLDAAQALVAEGKVRHFGLSNETVWGASQWLSLADRHGLPRMASIQNEYSLLCRQFDTDWAELSALEDMPLLAYSPLAAGLLSGKYAGDVTPDGSRRERNPTLGGRITPTVFETVAGYLGIAARHGLDPCQMALAFCRTRPFPVIPILGATSLDQLRTNLGAAQVTLAPEVLAEIALAHRAWPAPF
>NZ_CP023548.1|WP_096786331.1|2414740_2415259_-|hypothetical-protein
MRRPFLLLLVAFLALGACRIGLGGDEATEAAPSAMATDAIEVTPLDGPAAVPAADPAAAMAPDAGAPPLPPSPDPAAGAEIPAAIPAAAEPPPVVKSPSQIACEKRKGSYVKVKSLFTCVKTPRDAGKRCSRDSDCSGHCLARSQTCAPFDPLIGCNDILDDEGRRITLCLD
>NZ_CP023548.1|WP_096786330.1|2414249_2414753_-|lipocalin
MSRLSFLSLLLLAACAAKAPPPPSVAFRDTGTPIWSNATLEPARLAGEWREVAAFAAPGACRPGGATITTSGNGLAISGRVCLGGRETALGGPLAVTGPGRLLPAGGTEPWWVLWADTDYRTLAIGTPSGRFGFILNRGGPLPPDRLTAAREILDWNGYDLARLTLF
>NZ_CP023548.1|WP_096786329.1|2413491_2414178_+|NUDIX-domain-containing-protein
MGLAAEHAADDKTRVRPAATVILLRQGASGPEVLMGMRGAGAAFMPSKFVFPGGAVDSEDARVPLARLPAPECCRRLDLADPGAHALAAAAIRELWEETGLPLGVPGDWDAPEGWRDFAARGLLPDGAALRFIFRAITPPGRPRRFDARFFLADAARISGDPEDFSRACDELSHLHWLPLAEARRLDLPFITEVVLAEVAALASGADDAAGVPFFDNSGPVPTFRRLT
>NZ_CP023548.1|WP_096786328.1|2413121_2413523_+|DUF983-domain-containing-protein
MADGTIETEEERPLGPALWRGWRRVCPRCGTGPMLRGYLTVRDACPVCGESLHHHRADDGPAYLTILIVGHLMAPIILWSFVEFRPEPAVLATVFGIGTVSLSLFLLPRLKGAMVGLQWAKRMHGFGGRARSG
>NZ_CP023548.1|WP_096787245.1|2412271_2412676_-|histidine-kinase
MGPFFDFDALDTNGDGKVTKQELDARRAARVESADANGDGLLSAEELTALHVARMMPRVEAHTRQMIDRFDANGDGQLSVTEFAAGPNPQRMFDRLDANDDGAVSQEEADQMMQQGRGRGHGRGHGHHGWFWDR
>NZ_CP023548.1|WP_096786327.1|2411581_2412169_-|RNA-polymerase-sigma-factor
MPFDALSDVSEEALLVLYANGDPLAARALTLRLSPRVLAVASRMLSDRAEAEDVTQEAMLRLWRVAPEWRQGEAKVSTWLYRVVCNLCTDRLRGRRRQASTALDDAPEVADAAPGVEAALIEGDRMRALDAALAALPERQRQAVVLRHLEGLSNPEIAEVMQIGVEAVESLTARGKRALAALLSGQRAELGYGEV
>NZ_CP023548.1|WP_096786326.1|2411223_2411580_-|dihydroorotate-dehydrogenase
MRDTDLDDLFAEARREAPVPSEDLMARIRADAAAAQPDPHRPRPAPRRRAKRTLALFGGGGLFAGLATATIAGVWIGVAQPAPVAEALWRGAAAEPLDSVELVPGYELFASLDAPVGG
>NZ_CP023548.1|WP_096786335.1|2419231_2421730_-|cyclic-nucleotide-binding-domain-containing-protein
MTIILLVAALAVLFIVIAACEPIAHRLRLPFSVVLAVVGAALGTVALLLRRSEVAAGFPPELTELLALPIRSSVFLYMFLPTLLFQVSLSLNIRRMIDDWVPILVMAVVAVLVSTLAIGFALQPFSSMSLVACLLLGAIVSTTDPSAVVGIFRSIAAPQRLTRIVEGESLLNDAAAIALFGFFLTFVMAGVPDPTLRDALVDFPLLILGGVATGYVMARIALWLMTAMAAHPTAQLSLSLALPYLTYVLAEQGLHASGVIAVVTAGIAMNLAGPGRLSPATWSQLSDTWEMLAHWAGSLIFILAALLIPRLIGRATNWDLVLIGIVVLAAVLARAVMLSGLLPLLTRLNLSPKVERPYRVAILWGGLRGAVTLALALAVTENPLVPPHVKREVGILATGFVLFTLLAQGTTLRWVIRRLGLARLTPLDLALSNQVIAVALQNVREEVARTVRERELDPQIVRAEAKRFGQRLERAVELADDSADDIPDRDRITLGLLALAGRERDAILASFRQQLISPRLAETMLVDADRLIERTRLQGRDGYRSAGRMALGYGRRHRLAVLAHNRLKISRWLSQLTADRFEMLLSQRLILGDLHGLIDGKIRRIHGRRVAEILHEMLKRREEETAQALEALRLQYPGYSDEMVRSFIRRTALRLEEREYETLRDDGLIGQELFMTLRQRIAIARGRKERRPPLDLAVQKSELVRQFPLFAEMDEDQLRALERLLQTVYVRPGEVLLRRGDVPRKVFFIASGAVESDVAGQKVRLGRGEMFGQLAILTRKPRRAQVTAISHGTLLSLEETRFLELLRRNKALQDAAVESAARRNVTIDLASL
>NZ_CP023548.1|WP_096786336.1|2421805_2422135_-|hypothetical-protein
MDERMTASRRFQSVAQLRELLLGLEHDLGIADLSRNELDVLYAVKLLGESEDSIVRSDAIRRHTLCAAIATPTFHRALRSLVEKGFVDHAPMTKARAYKLGKRAGQLAH
>NZ_CP023548.1|WP_096786337.1|2422467_2423799_-|4Fe-4S-binding-protein
MHEAPPQFAGARPAPAVAAAPDRLERFGLWLRDHQREVRALQWAMVALYLPLLILPALLPLPDATARIWSNLTLFAQFLFWGIWWPGVLVSVLLFGRLWCGLLCPEGALSAAASRRGKGRAIPRWMKWPGWPFALFAGVTIYGQMISIYDDPRAALLILGLSSGSAVLVGWLYGREKRVWCRFLCPVNGVFGLLAKLAPMHYRVDARAWDACPPSRAREMRFNCEPMVPVRTMDSASPCHMCGRCAGFRDAVCLEPRAPGSEVLRSAGSAADSLMVIAGLIGLGSAAFWWEAAPWLGPLSRALGAAVEAPWVLFGRGMTLGEGAALLLTFGLIALSLSAAVALSLALAARLDGRSGMFHRLALALLPLSAAGLIVGLSQQTVARLAASGLPLDARWVWTALLLLGAGWSLRLAAAMVRRRPALGAVVPAIGVPLAVWAAVIWA
>NZ_CP023548.1|WP_096786338.1|2423907_2425767_+|ABC-transporter-ATP-binding-protein
MSRHPAPEPPPGFRARWAALRNVPPFLRMVWRASPGFLILSLLLRLARALIPVTALWFGKLIIDEVVRISALPPPGGGAWAWIGTPETGPLMLFIGAEFALAILSDLLGRAGGLIDTLLTERLTMSSSVRLMDHAAGLDLAAFEDAGFQDRLERARRQSGGRMTLTGQILTLMQDAVTVASLASGLLVYNPWLIVLLVAALVPAFLGEAHFNAQTYSLDFRRTPERRELDYLRVTAASVDTAKEIKIFGLAPFLIERYRMLSESFYRARRRIALARALWGTIFSALGTAGYYLAYLWMIGATLTGRLTIGDLTFLAGSFLRLRGLVEGLLTGFSVTASQALYLEDLFGFFRVEPSILPPARPLPVPRPIREGFRFEGVGFRYPGAGGWAVRDLSFTLKAGETLALVGENGAGKTTLVKLLARLYDPDEGRIMLDGHDLREFDPAALRGAMGVIFQDFVRYSFSAGDNIAVGRIEAREDALRIAGAAARSGADRIVERLPEGYAQMLGKRFRDGVELSGGEWQKLAIARAYMREVEVLILDEPTAALDARSEFEVFQRFKDLSAGRTAVLISHRFSSVRMADRILVLAGGRVEATGTHDELIARPGRYAELFELQAAGYR
>NZ_CP023548.1|WP_096786339.1|2425771_2425981_-|helix-turn-helix-domain-containing-protein
MPQARQRETARLLRHGRWVLGLSQEDFAARLGLDVTEVRALESGARPDGVGSGHALAALASPTAPMARA
>NZ_CP023548.1|WP_096786340.1|2426164_2427100_+|cobalamin-biosynthesis-protein-CobD
MIHAGAMLVAMGADAAWGWPDRIHARIGHPVTWIGRLIAALDRRWNQGTPEQRRSAGLACAFVVVLAAALPAALLQSMLPGGLVGAVLTGLLAWPLVAMRSMHEHVAAVEAPLAASDLPAARRAVSMIVGRDPSQLDTAGVTRAALESLAENSSDGIVAPLFWGALFGLPGIAAYKAINTLDSMIGHRTPRHEDFGRASALTDDVVNLIPARLTGGLFALVSGRPREALSVMRRDARAHRSPNAGWPEAALAGALGVRLSGPRIYGDRVSAEPWLNAGAPDPSPADLRRGLGLYRRAMALLAAGLALIMMI
>NZ_CP023548.1|WP_096786341.1|2427133_2428354_-|cysteine-desulfurase
MFDVATIRRDFPILSREVNGKPLVYLDNGASAQKPSVVIEAMNLAYSHEYANVHRGLHYLSNLATDKYEAVRATIARFLNAPSPEEIVFTTGTTEGINLISYGWAAPRLQAGDEIVLSIMEHHANIVPWHFLRERQGVVLKWVEVDANGDLDPQAVIDAIGPKTKLVAVTHMSNVLGTVVDVAAICAGAREKGVPVLVDGSQAAVHMPVDVAAIGCDFYAITGHKLYGPSGSGAIYIRSERMEEMRPFLGGGDMIHEVSRDAVSYAKPPMRFEAGTPGIVQQIGLGVALHYMMNLGMSEIAAHERTLRDYARDRLSGLNWLNVQGKSAGKGAIFSFTIEGGAHAHDISTVLDRKGVAVRAGTHCAMPLMTHYGVGATCRASFALYNTTDEVDRLVEALELCHELFG
>NZ_CP023548.1|WP_096786342.1|2428363_2428942_-|YIP1-family-protein
MSLGFADILRLARYTVSNPREGARAVLEMDLPMEARWVALVLTAVAAALVTFVGVAALPAEVRALLGDDLPSPLFSAALQTGLLVLAAGLIHRIGAWRGGTGTFADALLLVAWLQFILLCLEVLQLAAQLLLPPLADVLGVVGIVLFFWLLTHFIAELHGFRSTVAVLGGILLALVGIAFALAAIMMPFMGP
>NZ_CP023548.1|WP_096786343.1|2428938_2429418_-|YIP1-family-protein
MAVTTDIVESYRHPRAVIRRYLDAGENEPRALAILMGACLLIFVSQWPMLARAAYLDPSQPLEARMSGALMGTVFLLPPICYVLAAISHLVARLFGGRGSYFGARLALFLALLATSPLMLLNGLVGGFIGEGPGVLIVGFLVLGGFLAIWGLMLTEAER
>NZ_CP023548.1|WP_096786344.1|2429418_2430702_-|SufD-family-Fe-S-cluster-assembly-protein
MADALPKEGPLAARIAGLGFANEGWQAPARFDALSRLSAMGLPGRRDEYWRYTDPASFNAPDPLPATTAGEDEDVLPFEAIDRLRIVFVDGVFDAEASDPLALDHVEIGLLGRAHSDIHWARDLYGVLEARGQVPVKRPFAALNTAFASEGVLIRATGTAPKPVALVYIHRSETSDAMLHHCIRVEAGAELTLLESGPAAARFTKVMEVDVAEGGRFHHIRAQGPDHDRRAATHLFARVASKALFKSFTLTANGVMTRNEAVLELVGDDAVAHVAGAAVGDGKFHHDDTVFITHEGQCCESRQVFKKVLKNGATGVFQGKILVKPGAQKTDGYQISQSLLLDEDSVFLAKPELEIYADDVKCSHGSTSGAIDETGLFYLRSRGVPLKAAQALLVLAFLAEAIQEIENEEIAEDIRLRLESWLARHEH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

282442 : 290889

Acidithiobacillus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096787130.1\|282442_283531_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	2.1e-46	35.1
WP_157764491.1\|283562_284900_-	DNA (cytosine-5-)-methyltransferase	A0A0R6PG08	Moraxella_phage	7.6e-38	32.3
WP_096784469.1\|285719_287045_-	recombinase family protein	K4ICM1	Acidithiobacillus_phage	9.6e-126	54.4
WP_096784470.1\|287041_287497_-	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	1.2e-22	45.8
WP_096784471.1\|287493_287697_-	hypothetical protein	NA	NA	NA	NA
WP_096784472.1\|287693_289376_-	DEAD/DEAH box helicase	A0A2I7SC38	Paenibacillus_phage	1.9e-41	34.4
WP_096784473.1\|289387_290017_-	hypothetical protein	K4ICM8	Acidithiobacillus_phage	2.2e-27	42.2
WP_096787131.1\|290019_290889_-	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	3.1e-80	56.2

DBSCAN-SWA_2

896814 : 926403

Bacillus_virus(33.33%)

protease,holin,integrase

attL 896710:896725|attR 902222:902237

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
896710:896725	attL	NA	NA	NA	NA
WP_096785030.1\|896814_898182_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_157764502.1\|898639_899599_+	hypothetical protein	NA	NA	NA	NA
WP_096785031.1\|899818_900928_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_096785032.1\|901088_901733_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	6.1e-09	28.9
WP_096785033.1\|902288_902744_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
902222:902237	attR	NA	NA	NA	NA
WP_157764503.1\|902854_906289_+	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_096785034.1\|906564_907305_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_096785035.1\|907301_907658_+	GFA family protein	NA	NA	NA	NA
WP_096785036.1\|907893_908679_-	inositol monophosphatase	NA	NA	NA	NA
WP_096785037.1\|908836_910345_-	inorganic phosphate transporter	M4QMY4	Ostreococcus_lucimarinus_virus	4.9e-41	32.8
WP_096785038.1\|910469_911375_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_096785039.1\|911469_912336_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_096785040.1\|912408_912954_-	biotin transporter BioY	NA	NA	NA	NA
WP_096785041.1\|912967_913564_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_096785042.1\|913538_914285_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.9e-07	28.1
WP_096785043.1\|914400_915675_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA
WP_096785044.1\|915852_916983_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_096785045.1\|917073_919731_+	type I DNA topoisomerase	A0A0G2Y787	Acanthamoeba_polyphaga_mimivirus	6.7e-102	31.8
WP_096785046.1\|919737_920766_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.8e-18	30.5
WP_096785047.1\|920762_921599_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_096785048.1\|921700_922627_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096785049.1\|922713_923298_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_096785050.1\|923294_924746_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_096785051.1\|924756_926403_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	7.9e-61	30.7

DBSCAN-SWA_3

1145102 : 1217343

Bacillus_thuringiensis_phage(17.65%)

portal,capsid,protease,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096785250.1\|1145102_1145828_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_096785251.1\|1145977_1146949_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_096785252.1\|1146945_1147230_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_096785253.1\|1147305_1147866_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_096785254.1\|1147876_1150717_+	helicase	A0A248SJQ0	Salicola_phage	7.6e-27	28.3
WP_096785255.1\|1150746_1151025_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_096785256.1\|1151079_1151418_+	ferredoxin family protein	NA	NA	NA	NA
WP_002719580.1\|1151697_1152207_+	CarD family transcriptional regulator	NA	NA	NA	NA
WP_096785257.1\|1152263_1153010_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_096785258.1\|1153091_1154108_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_096785259.1\|1154119_1155988_-	potassium transporter	NA	NA	NA	NA
WP_096785260.1\|1156112_1159211_-	translation initiation factor 2	NA	NA	NA	NA
WP_096785261.1\|1159375_1160062_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_096785262.1\|1160089_1161388_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA	NA	NA	NA
WP_096785263.1\|1161457_1161709_-	hypothetical protein	NA	NA	NA	NA
WP_096785264.1\|1161751_1162747_-	hypothetical protein	NA	NA	NA	NA
WP_096785265.1\|1162914_1163262_-	hypothetical protein	NA	NA	NA	NA
WP_096785266.1\|1163258_1163645_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	2.6e-07	33.1
WP_096785267.1\|1163644_1164541_-	protein-glutamate O-methyltransferase	NA	NA	NA	NA
WP_096785268.1\|1164537_1164996_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_096785269.1\|1164999_1167072_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_096785270.1\|1167080_1167449_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	8.9e-13	36.2
WP_096785271.1\|1167439_1167724_-	STAS domain-containing protein	NA	NA	NA	NA
WP_096785272.1\|1167760_1168312_-	chemotaxis protein CheD	NA	NA	NA	NA
WP_096787174.1\|1168366_1170706_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.9e-09	62.7
WP_096785273.1\|1170909_1172730_-	chemotaxis protein	NA	NA	NA	NA
WP_096785274.1\|1172878_1174570_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.2e-13	27.6
WP_096785275.1\|1174661_1175030_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	5.7e-12	37.6
WP_096785276.1\|1175026_1175362_-	STAS domain-containing protein	NA	NA	NA	NA
WP_096787175.1\|1175730_1177683_+	alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase	NA	NA	NA	NA
WP_096785277.1\|1177679_1180988_+	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA
WP_096785278.1\|1180984_1183171_+	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_096785279.1\|1183167_1185234_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_096785280.1\|1185230_1187009_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA
WP_096785281.1\|1187005_1188823_+	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_096785282.1\|1188819_1191483_+	malto-oligosyltrehalose synthase	NA	NA	NA	NA
WP_096785283.1\|1191627_1192293_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_096785284.1\|1192391_1193852_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	3.1e-48	29.8
WP_096785285.1\|1193933_1194548_-	CvpA family protein	NA	NA	NA	NA
WP_096785286.1\|1194567_1195926_-	DNA repair protein RadA	NA	NA	NA	NA
WP_096785287.1\|1195969_1196395_-	paraquat-inducible membrane protein A	NA	NA	NA	NA
WP_096785288.1\|1196396_1197143_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_096785289.1\|1197139_1197922_-	ABC transporter permease	NA	NA	NA	NA
WP_096785290.1\|1197918_1198968_-	alanine racemase	NA	NA	NA	NA
WP_096787176.1\|1199188_1199926_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_002719616.1\|1200104_1200338_+	acyl carrier protein	I1TR04	Pseudomonas_phage	7.3e-05	43.9
WP_096785291.1\|1200920_1202183_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_096785292.1\|1202182_1203361_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_096785293.1\|1203548_1203866_+	hypothetical protein	NA	NA	NA	NA
WP_096785294.1\|1203858_1205157_+	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	7.4e-70	38.5
WP_096787177.1\|1205245_1206412_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	6.2e-60	39.3
WP_096785295.1\|1206413_1206647_+	hypothetical protein	NA	NA	NA	NA
WP_096785296.1\|1206651_1207215_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	4.1e-33	52.1
WP_096785297.1\|1207248_1208445_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	4.7e-63	41.7
WP_096785298.1\|1208539_1209139_+	hypothetical protein	NA	NA	NA	NA
WP_096785299.1\|1209138_1209474_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_096785300.1\|1209470_1209869_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_096785301.1\|1209904_1210318_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_096785302.1\|1210317_1210635_+	gene transfer agent family protein	NA	NA	NA	NA
WP_096785303.1\|1210636_1210837_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_096785304.1\|1210829_1211480_+\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	1.6e-09	29.2
WP_096785305.1\|1211490_1212123_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	2.7e-62	53.8
WP_096785306.1\|1212122_1213007_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	5.2e-59	43.1
WP_096785307.1\|1213003_1213444_+	peptidase	F4YXU4	Roseobacter_phage	6.4e-26	43.2
WP_096785308.1\|1213443_1217343_+	host specificity protein	A0A0K1LL82	Rhodobacter_phage	2.8e-221	39.4

DBSCAN-SWA_4

1226432 : 1298453

Streptococcus_phage(14.29%)

integrase,transposase,tRNA

attL 1228290:1228308|attR 1304388:1304406

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096785319.1\|1226432_1227683_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	3.9e-68	37.0
WP_096785320.1\|1227759_1228875_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
1228290:1228308	attL	NA	NA	NA	NA
WP_096785321.1\|1228889_1229312_-	cupin domain-containing protein	A0A291AU44	Pandoravirus	4.3e-27	45.3
WP_096785322.1\|1229583_1229745_+	hypothetical protein	NA	NA	NA	NA
WP_096785323.1\|1229844_1231122_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.6e-149	62.4
WP_096785324.1\|1231158_1232043_-	DMT family transporter	NA	NA	NA	NA
WP_096785325.1\|1232062_1232476_-	transcriptional repressor	NA	NA	NA	NA
WP_096785326.1\|1233062_1236716_+	vitamin B12-dependent ribonucleotide reductase	A0A1X9SGV9	Bradyrhizobium_phage	0.0e+00	56.7
WP_096785327.1\|1237077_1237572_+	cell wall hydrolase	A0A172Q0A7	Acinetobacter_phage	8.3e-06	30.9
WP_096785328.1\|1238154_1238856_-\|transposase	transposase	NA	NA	NA	NA
WP_096785329.1\|1238855_1239188_-	hypothetical protein	NA	NA	NA	NA
WP_157764506.1\|1239796_1243648_+	hypothetical protein	A0A2H4PQT3	Staphylococcus_phage	1.8e-23	24.4
WP_096785331.1\|1244079_1245597_+	hypothetical protein	NA	NA	NA	NA
WP_096785332.1\|1246283_1248572_-	hypothetical protein	NA	NA	NA	NA
WP_096785333.1\|1248784_1249711_-	hypothetical protein	NA	NA	NA	NA
WP_157764507.1\|1249968_1250121_+	hypothetical protein	NA	NA	NA	NA
WP_096785334.1\|1250268_1251315_+	DUF262 domain-containing protein	A0A1V0SF45	Hokovirus	7.4e-12	25.8
WP_157764508.1\|1251311_1251980_+	hypothetical protein	NA	NA	NA	NA
WP_096785335.1\|1252529_1253591_-	restriction endonuclease	A0A1S5SAB0	Streptococcus_phage	2.0e-49	39.0
WP_096785336.1\|1256095_1256548_+	hypothetical protein	NA	NA	NA	NA
WP_096785337.1\|1256627_1257731_+	AAA family ATPase	A0A1V0CP82	Kaumoebavirus	4.7e-09	26.9
WP_157764509.1\|1258141_1258846_+	hypothetical protein	NA	NA	NA	NA
WP_157764510.1\|1258842_1260996_+	hypothetical protein	NA	NA	NA	NA
WP_096785340.1\|1260992_1261979_+	AAA family ATPase	NA	NA	NA	NA
WP_157764511.1\|1261975_1263487_+	hypothetical protein	NA	NA	NA	NA
WP_096787178.1\|1264379_1264778_+	cell wall hydrolase	A0A142EZU6	Stenotrophomonas_phage	3.5e-07	33.1
WP_096785342.1\|1265953_1267153_+	nucleotidyltransferase	NA	NA	NA	NA
WP_096785343.1\|1267158_1267635_+	hypothetical protein	NA	NA	NA	NA
WP_157764512.1\|1268035_1268524_-	hypothetical protein	NA	NA	NA	NA
WP_096785344.1\|1268600_1269656_-	hypothetical protein	NA	NA	NA	NA
WP_157764513.1\|1270164_1272207_-	abortive phage infection protein	NA	NA	NA	NA
WP_096785346.1\|1272203_1273220_-	PD-(D/E)XK motif protein	NA	NA	NA	NA
WP_157764514.1\|1273216_1275928_-	endonuclease	NA	NA	NA	NA
WP_096785348.1\|1275966_1277472_-	ATP-binding protein	NA	NA	NA	NA
WP_096785349.1\|1277683_1279228_-	DNA cytosine methyltransferase	G3CB01	Aeropyrum_pernix_spindle-shaped_virus	1.1e-19	26.8
WP_096785350.1\|1279294_1279765_+	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	3.2e-39	55.9
WP_157764515.1\|1280026_1280482_-	hypothetical protein	NA	NA	NA	NA
WP_096785352.1\|1280518_1280857_+	hypothetical protein	NA	NA	NA	NA
WP_157764516.1\|1281092_1281860_+	hypothetical protein	NA	NA	NA	NA
WP_096785354.1\|1281856_1284088_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_096785355.1\|1285001_1285988_+	AAA family ATPase	NA	NA	NA	NA
WP_157764517.1\|1285984_1287829_+	hypothetical protein	NA	NA	NA	NA
WP_157764584.1\|1288934_1290401_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_096784779.1\|1290397_1291261_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.7e-25	32.6
WP_096785357.1\|1292020_1292575_-\|transposase	transposase	A0A1P8CWQ3	Bacillus_phage	1.7e-15	38.1
WP_096785358.1\|1294533_1295310_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_096785359.1\|1296269_1297862_-	calcium-binding protein	NA	NA	NA	NA
WP_096785360.1\|1297979_1298453_+\|transposase	transposase	NA	NA	NA	NA
1304388:1304406	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1891461 : 1913373

Bacillus_phage(22.22%)

portal,terminase,tRNA,protease,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096785857.1\|1891461_1892106_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_096785858.1\|1892054_1892429_-	DUF2155 domain-containing protein	NA	NA	NA	NA
WP_096785859.1\|1892425_1892896_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_096785860.1\|1892895_1893270_-	NADH:ubiquinone oxidoreductase subunit NDUFA12	NA	NA	NA	NA
WP_096785861.1\|1893387_1894650_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-134	58.7
WP_096785862.1\|1894771_1895404_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	4.0e-61	61.0
WP_096785863.1\|1895620_1896229_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_096785864.1\|1896350_1897553_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096785865.1\|1897549_1899238_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_096785866.1\|1899234_1899897_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_157764529.1\|1899993_1900527_+	CAP domain-containing protein	U5Q0C0	Bacillus_phage	8.1e-15	31.2
WP_096785868.1\|1900523_1901843_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_096787212.1\|1901964_1902798_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_096785869.1\|1902946_1903357_-	hypothetical protein	NA	NA	NA	NA
WP_096785870.1\|1903353_1903581_-	hypothetical protein	NA	NA	NA	NA
WP_096787213.1\|1903671_1903911_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157764530.1\|1903940_1904339_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_157764531.1\|1904396_1904927_-	hypothetical protein	NA	NA	NA	NA
WP_096785873.1\|1904926_1905433_-	hypothetical protein	NA	NA	NA	NA
WP_096785874.1\|1905444_1907052_-\|terminase	terminase large subunit	M1PSF2	Streptococcus_phage	1.1e-83	35.8
WP_157764532.1\|1907057_1907465_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_096787214.1\|1907461_1907911_-	HNH endonuclease	Q38456	Bacillus_phage	5.2e-23	55.6
WP_096785876.1\|1907915_1908170_-	hypothetical protein	NA	NA	NA	NA
WP_096785877.1\|1908171_1908717_-	hypothetical protein	I3UM02	Rhodobacter_phage	6.8e-09	31.0
WP_096785878.1\|1908769_1910410_-\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	2.2e-55	39.2
WP_157764533.1\|1910396_1911617_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	3.1e-62	37.4
WP_096785880.1\|1911692_1911893_-	hypothetical protein	NA	NA	NA	NA
WP_096785881.1\|1911889_1912096_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_096785882.1\|1912248_1913373_-	AAA family ATPase	A0A2I7RPV6	Vibrio_phage	3.1e-24	30.0

DBSCAN-SWA_6

3019816 : 3026276

Emiliania_huxleyi_virus(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096786849.1\|3019816_3020236_+	acyl-CoA transferase	G8DH50	Emiliania_huxleyi_virus	6.5e-36	55.0
WP_096786850.1\|3020260_3021202_+	hypothetical protein	G8DH51	Emiliania_huxleyi_virus	6.0e-98	55.7
WP_096786851.1\|3021201_3021639_+	hypothetical protein	NA	NA	NA	NA
WP_157764588.1\|3021635_3021866_+	hypothetical protein	NA	NA	NA	NA
WP_096786852.1\|3021858_3024276_+\|tail	phage tail tape-measure protein	A0A1J0GUY9	Halomonas_phage	1.6e-22	37.1
WP_096786853.1\|3024337_3024964_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	7.2e-63	58.3
WP_096786854.1\|3024960_3025845_+	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	2.0e-66	46.4
WP_096786855.1\|3025841_3026276_+	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	7.2e-30	45.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023550

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP023549

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP023548

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection