CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP014879	Sulfuricaulis limicola strain HA5	4 crisprs	cas4,csa3,RT,cas6,DEDDh,DinG	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP014879_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014879_1

2408975-2409076

Orphan

Consensus_repeat	Method
GCGCGAGCTGCGGCAGGA	PILER-CR

2 spacers

The CRISPR arrays of NZ_AP014879_1

>merge|NZ_AP014879|1|2408975-2409076|PILER-CR
GCGCGAGCTGCGGCAGGACAATGCCGAGCTGCGCGGTGATCACCGGGAGCTGCGTCAGGACAAACGCGAGTTGCATCGTGACAAGCGCGAGCTGCGGCAGGA

>NZ_AP014879|1|1|2408975-2409076|PILER-CR
GCGCGAGCTGCGGCAGGA	CAATGCCGAGCTGCGCGGTGATCA
CCGGGAGCTGCGTCAGGA	CAAACGCGAGTTGCATCGTGACAA
GCGCGAGCTGCGGCAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014879.1\|WP_096361361.1\|2408058_2408535_+\|CopD-family-protein	unknown	unknown	gnl\|CDD\|227902
NZ_AP014879.1\|WP_096361366.1\|2416324_2416786_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
NZ_AP014879.1\|WP_096361359.1\|2406271_2406964_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|181575
NZ_AP014879.1\|WP_096361356.1\|2402130_2403363_-\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_AP014879.1\|WP_172426037.1\|2405564_2406272_-\|phosphoglycolate-phosphatase	unknown	unknown	gnl\|CDD\|237310
NZ_AP014879.1\|WP_096361353.1\|2399804_2400224_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|182688
NZ_AP014879.1\|WP_096361970.1\|2413081_2413453_-\|DUF302-domain-containing-protein	unknown	unknown	gnl\|CDD\|269820
NZ_AP014879.1\|WP_096361364.1\|2412675_2412891_-\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|238219
NZ_AP014879.1\|WP_096361368.1\|2417504_2419160_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225307
NZ_AP014879.1\|WP_096361367.1\|2416872_2417358_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
NZ_AP014879.1\|WP_096361355.1\|2401044_2402070_-\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_AP014879.1\|WP_172426039.1\|2410400_2412686_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_AP014879.1\|WP_096361369.1\|2419386_2420277_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_AP014879.1\|WP_096361354.1\|2400220_2401048_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NZ_AP014879.1\|WP_096361365.1\|2413713_2416194_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_AP014879.1\|WP_096361357.1\|2403373_2403952_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NZ_AP014879.1\|WP_096361360.1\|2407250_2407946_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|237032
NZ_AP014879.1\|WP_096361358.1\|2403954_2405451_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|184146
NZ_AP014879.1\|WP_172426038.1\|2410041_2410404_-\|cupredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379208
NZ_AP014879.1\|WP_096361363.1\|2409194_2409992_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP014879.1\|WP_096361361.1\|2408058_2408535_+\|CopD-family-protein	gnl\|CDD\|227902	COG5615, COG5615, Predicted integral membrane protein [Function unknown].	2.95012e-19
NZ_AP014879.1\|WP_096361366.1\|2416324_2416786_-\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	4.37967e-09
NZ_AP014879.1\|WP_096361359.1\|2406271_2406964_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|181575	PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional.	3.54452e-124
NZ_AP014879.1\|WP_096361356.1\|2402130_2403363_-\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.75655e-96
NZ_AP014879.1\|WP_172426037.1\|2405564_2406272_-\|phosphoglycolate-phosphatase	gnl\|CDD\|237310	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP.	1.03102e-109
NZ_AP014879.1\|WP_096361355.1\|2401044_2402070_-\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	0
NZ_AP014879.1\|WP_096361970.1\|2413081_2413453_-\|DUF302-domain-containing-protein	gnl\|CDD\|269820	cd14797, DUF302, Uncharacterized domain family DUF302. These domains are mostly found in bacterial single-domain proteins and have been shown to form homodimers; they may also bind zinc. Also characterized as COG3439.	9.84155e-48
NZ_AP014879.1\|WP_096361364.1\|2412675_2412891_-\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|238219	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.	8.38198e-12
NZ_AP014879.1\|WP_096361368.1\|2417504_2419160_+\|hypothetical-protein	gnl\|CDD\|225307	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only].	4.87119e-179
NZ_AP014879.1\|WP_096361367.1\|2416872_2417358_-\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	4.25482e-12
NZ_AP014879.1\|WP_172426039.1\|2410400_2412686_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_AP014879.1\|WP_096361369.1\|2419386_2420277_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_AP014879.1\|WP_096361354.1\|2400220_2401048_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	5.86868e-148
NZ_AP014879.1\|WP_096361365.1\|2413713_2416194_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.92166e-49
NZ_AP014879.1\|WP_096361357.1\|2403373_2403952_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	2.31166e-139
NZ_AP014879.1\|WP_172426038.1\|2410041_2410404_-\|cupredoxin-domain-containing-protein	gnl\|CDD\|379208	pfam13473, Cupredoxin_1, Cupredoxin-like domain. The cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel.	1.93985e-31
NZ_AP014879.1\|WP_096361358.1\|2403954_2405451_-\|anthranilate-synthase-component-I	gnl\|CDD\|184146	PRK13565, PRK13565, anthranilate synthase component I; Provisional.	0
NZ_AP014879.1\|WP_096361360.1\|2407250_2407946_-\|phosphotransferase	gnl\|CDD\|237032	PRK12274, PRK12274, serine/threonine protein kinase; Provisional.	1.42986e-18
NZ_AP014879.1\|WP_096361353.1\|2399804_2400224_-\|OsmC-family-protein	gnl\|CDD\|182688	PRK10738, PRK10738, OsmC family protein.	1.83302e-50

>NZ_AP014879.1|WP_096361361.1|2408058_2408535_+|CopD-family-protein
MPVAITLHILSAVVWVGGMFFAWMALRPVAARLLEPPLRLPLWSQTFARFFPWVWAAVMLLPASGYWMIFESFEGMQNVGLHVHVMQLFGLVMIGIYLHVFFAPYRGMHRAIAAGDLPAAGKHLAVIRRLIGINLILGLITIVTATGGAYWLSNIRLF
>NZ_AP014879.1|WP_096361360.1|2407250_2407946_-|phosphotransferase
MPALENLGLEDLRTLAVKTFRQGGGSRPDVLLVRSGNEAAVLKDYGRADPWFRRLVGPLSARREARALEQLRGVRGVPRLLCRVGSDALLLEYVPGASAREVPPGGLTPQFFERFYRLVERLHEAGVAHCDLRSTGNILIGADGEPHAVDFAAHFRRGRSWNPVSRWMYAKFCEADRVAVARLKKTHAPELLNEAEMQALARDRKTWLERGARLIGKSVRNLSRWLLTKKA
>NZ_AP014879.1|WP_096361359.1|2406271_2406964_-|ribulose-phosphate-3-epimerase
MRDYKIAPSILSADFARLGEEVTSVLASGADIVHFDVMDNHYVPNLTIGPLVCEALRKHGVKADIDVHLMVKPVDRIIPDFAKAGATYITFHPEGTEHIDRSLQLVRDSGCKSGLVFNPATPLDHLKYVMDKVDMILLMSVNPGFGGQSFIRSSLDKLREARKMIDASGRPIRLEIDGGVKVDNIREIAEAGADTFVAGSAIFSAGKAGDPNRYNSVVKAMRDELAKAKV
>NZ_AP014879.1|WP_172426037.1|2405564_2406272_-|phosphoglycolate-phosphatase
MPTTARKIASFPLAVKMVMIDLDGTLIDTVPDLAAAANRMLADLDRPAWGIEHYRAWIGNGVPRFVKRALTGEMQAEPDAALNERGLALFRQHYGEAVSNLSRPYPGVVEALEQLTDQGYALACITNKAEVFTLPLLKNLELHKYFKLVLSGDSLPKQKPDPLPLQHACRHFGIDAAHGVLVGDSSNDVHAARAAGMPVICVTYGYNHGHDIRQSLPDAVVDSLMEIPQYLKLYA
>NZ_AP014879.1|WP_096361358.1|2403954_2405451_-|anthranilate-synthase-component-I
MSLSKKEFDNYAAQGFNRIPLMREVLADLDTPLSIYLKLARGPYSYLFESVQGGEKWGRYSIIGLPARTLLRVSGNEVTVEKDGKTIQRETVTDPLETVRRFRAQYTVPEIHGLPRFTGGLVGYFGYETIRYVEPRLGRMAKPDAIGAPDILLMVSDEVVVFDNLQGRLYVVIHVNPAMADAYAKANTRLDELVAGLSQSIPRAMAPDNNKAVAEADFISGFTQQGFEKAVERSLEYIRAGDIMQVVLSQRLAIPFSAAPLDLYRALRTLNPSPYMYFMDLKNFHIVGSSPEILVRLEDGLVTVRPIAGTRPRGATEAEDQALEKELLADPKERAEHIMLVDLGRNDVGRVARVGSVQVSDQMVIERYSHVMHIVSNVTAELKPGLDAIDVLRATFPAGTVSGAPKVRAMEIIEELEPTRRGVYSGAVGYIGWNGNMDTAIAIRTAVIRDKKLYIQAGAGIVADSVPRNEWNETMNKARAIFRAVAMASAGLNGRQGA
>NZ_AP014879.1|WP_096361357.1|2403373_2403952_-|aminodeoxychorismate/anthranilate-synthase-component-II
MLLMIDNYDSFTYNLVQYLGELGEDVRVHRNDQITVPEIEKLKPDHIVISPGPCTPNEAGVSVETIQKLGGRFPILGVCLGHQSIGQAYGGRIVRAKQLMHGKTSMIHHEDVGVFTGLPNPFEATRYHSLVIERASLPDVLEITAWTDDGEIMGVRHKTLPVEGVQFHPESILTQHGHELLANFLKSHRRAA
>NZ_AP014879.1|WP_096361356.1|2402130_2403363_-|multidrug-effflux-MFS-transporter
MHDPAHHSHRHFGLRLTFTVALFAMLAPFSIDTYLPSFPDIAQEFSASPVAMQQTLSLYLLAFAVMMLVYGPISDAFGRKNVVLVSVVVYVATSVGCALATNIHWLLLMRIGQGLSASGALVVGRAIIRDAFAGPAAQRVMSQVMLIFAVAPAVAPIIGGWLHDAFGWRSVFWFLVLLGLVVWLWAALFLPETLPPVGRQSGHPRAIAAAYWRALATGRFMVLIAVIALNFGGFFLYIAGAPDVMYRHLHYGADDFGRLFVPLVAGLMLGAFISGRVAGRFSHVQAVGAGFGLMLAAAGVNLGLAAWLAHTAYTIIVPVMLYATGMSLAMPNLSLLALDVFPSHRGLASALQGFSQAGFNALVAGLLAPLLSHRVEFLAGGMLALNLAGVGMWFYWRQRFNAHEPATALS
>NZ_AP014879.1|WP_096361355.1|2401044_2402070_-|anthranilate-phosphoribosyltransferase
MDMPSAIRAVIERRNLSGDEMREVMRLIMTGQATPAQIGGFLAGLRTKGETVEEIAAAAGVMRELATPVGVSGPHLVDTCGTGGDGASTFNISTASAFVVAAAGGKVAKHGNRSVSSKSGSADVLEAAGVNLELTPEQVARCVNEVGVGFMFAPKHHGAMKHAIGPRREMGVRTIFNLLGPLTNPANAPNQVLGVFSDQWVEPLAEVLQRLGSEHVLVVHAEDGMDEISIGAPTHVAELKEGRVRIFTIQPEQFGLRRSEVSKLVAGSPAESLKMIESVLNNEAGPARDIVALNAGAAIYVAGLAPGLAAGIKSAQAVIASGAARKKLQDLVALSRKLAAA
>NZ_AP014879.1|WP_096361354.1|2400220_2401048_-|indole-3-glycerol-phosphate-synthase-TrpC
MNAPPDILQKILARKAEEVAERARRAPLAELKNRLADAPAPRGFLQAIRHRLATGQPAVIAEIKKASPSKGLLRADFRPAEIAKSYERHGATCLSVLTDADFFQGSDEYLKQARTACALPVLRKDFTVEAYQVYEARVIGADAILLIVAALDDARLRELAALATELGMDALVEVHDAQELDRALALPTPLIGINNRDLRTFRTTLTTTLDLLGGIPGDRIVVTESGIHAPCDVAQMRGRGVNVFLVGEAFMKADDPGLKLQELFEVSTQRQARKS
>NZ_AP014879.1|WP_096361353.1|2399804_2400224_-|OsmC-family-protein
MKANVKWTGGVSFEGRADSGHTVVMDGAPESGGQNKGSRPMELVLIGMGGCTAYDVVHILRKSRQEITDCVAEIEARRAETDPKVFTNIHIHFVVTGKNLDEKKVQHAIELSATKYCSASIMLGKTARITHDFELIESE
>NZ_AP014879.1|WP_096361363.1|2409194_2409992_-|hypothetical-protein
MKLANTVAMCLASLLLAPRAAPAANEWSLQFGVEDFRWREFDGGTRLLEESGARYSLGIGLESPVSPDALTVFGAEGKLYFGTVDYDGQACNILTGICVPSASETDYNGLMGEAWIARRHPRAGGGAFEVFGAMGIDAWTREIRSTATASGGSEDWSVLYGRAGAGWRTGSYALRAGLKLPLAVKETTDFGVDLEPKGRASLFFDFTGNVHESARQSWAISAFYDSYRFAESDHVIISTNIGLVEIWQPESHQDVLGLRLTGRWR
>NZ_AP014879.1|WP_172426038.1|2410041_2410404_-|cupredoxin-domain-containing-protein
MNIWLINLAGIVVMAAIVWWFWLSRPQARRAVGAGPIEIVVDGGVYTPARVEVPAGKPVTLRFLRKDANPCAEKAVFDSLGVSADLPLGKPLDVTVTPPQPGEYEFTCQMRMYRGTLVAK
>NZ_AP014879.1|WP_172426039.1|2410400_2412686_-|copper-translocating-P-type-ATPase
MKADAVLPGSPAVGAAAPDATTTRLSISGMSCAGCVATVENALKNVPGVTEAAVNFAEHTATVHGNVDAKTLVAAVTASGYAAAELRGAEDESEKEAAELAHYRALLRKFIAAFAIGLPLMLAELLGVMPMLDMPSGRVFWLAVGAATLWVLVYAGGHFFRGAWKSFRAHNANMDTLIALGTGAAWLYSMLVLLFPDLVPSLARHAYFEAAAIIIALINLGQALEMRARGKTSEAIKRLIGLQPKTARVIRDGKEMDIPISEVGLDETIRVRPGEKIPVDGVIIEGHSSVDESMLTGEPMPVEKKTGDEVTGGTLNKTGSFLFQAKRIGADTALARIIEMVRRAQASKPAIGRLADRISAVFVPSVLIIAVITFLAWFNLGPEPKLSYMLVATMTVLIIACPCALGLATPISIMVGVGKAAEYGILIRNGEALQQAGKLTTVVLDKTGTITEGRPAVTALVPAAGWDETKLLTVAASIETGSEHPLAEAIVAAAKEKQIKVSPANDFQAIAGHGVSATVDGKKVLFGNARLMAQHRIELGDLAARAGELAARAQTPMFLAMDGKAAGIVAVADPIKPDSKAAIARLHANGIKVAMITGDNRATAEAVAREVGVDEVLAEVLPGDKADQVAALQQRGGIVGMVGDGINDAPALAQADVGFAIGTGTDIAIESADVALMRGSLHGVADAIAISRATVRNIKQNLFGAFIYNVLGIPVAAGVLYPFTGLLLNPIIAGAAMAMSSVTVVSNANRLRWFKSGRESS
>NZ_AP014879.1|WP_096361364.1|2412675_2412891_-|heavy-metal-associated-domain-containing-protein
MAVRETRFNVKGMKCGGCVAKATEAVSKLPGYQACEFDLKSATGVVKGDVDPTAVAKALTEAGYPAQVNEG
>NZ_AP014879.1|WP_096361970.1|2413081_2413453_-|DUF302-domain-containing-protein
MKDSFDNTVKRVTEALKTEGFGVLTDIDVQATMKAKLGIDGKPYRILGACNPPLAHRAITADPDIGLLLPCNVVVREEADKSITVGFMDPIAVLKLTDNPAITEVAKEVRGRLERVRDKLVGN
>NZ_AP014879.1|WP_096361365.1|2413713_2416194_+|diguanylate-cyclase
MIGNPATVSGRVSRITITTIGVALILLGISVILGWLLKIAPLLQVVPGFAAMVFNTALCFALAGTALLLPERATWRRRAQTTIGIIIASLSALILAQDIFGVDLAIDHLFSAEWLHDYRPHPTRMAPNTAVALILGGISLVLLPVRARWANHLTLILTLLVAVIGGTALVGYLFNLELLFTWYPYARMALHTAIATVALAIGLGLKALQQPHFQELFGAGQDKRIVFSGSVILVTIALVSGLASFVVLERQIEVMLRNELELLLRNRVDVFHNTINQGILATEAIATRPAIQRELQRLHAAPNDPGAIKFLRQAIGSFLPLGFSAVILNDRHGRELVHAGTLIQQPETRLRLNTPQHAELLWDNGLTLRLQIPIRDPGGPSGTVIAERPLPLLTLLFHDIRGLGETGEMAVCAAHGDNILCLPTRLNPRVFSVPRRIQGTSLPMSHALDGDTGVITASDYRGQQVIAAHSPIPQLGLGMVLKMDASELYGPLHQKIQRVALLLLILVTFGILLLHWQVMPLARRLVESERRTRESEQRWNFALEGSQNGVWDWDMETNAVFFSRRWKEMLGYAEHEISGKLEEWDKRVHPEDKARVHADIEKHMQGKAAHYQNEHRVLCKDGTYKWVLDRGMIVSRDASGKPVRMIGTHTDITERKRAEETIRELSLTDELTGLRNRRGFLTLAQMEMALIRRTKRQMALFYIDLDGMKKINDSFGHSVGDLALQDVAQILRQTFRESDIICRLGGDEFAVLALETTGRPREQIVKRLQAKIDSHNHTANRQYTIAVSVGMIHVDSGSTITLEELMAQADTEMYQAKQKRGAQRKN
>NZ_AP014879.1|WP_096361366.1|2416324_2416786_-|cytochrome-c
MRRFMVMTAVLLFVAACGKGEPDKTAKEAATAGQAGRTFTTESLFSGVRLFHEHCAQCHGPEAQGHPDWQNPKVAAAPPLNGTGNVWKRDKQGMIAIIKNGVMRNGEPVMPAWKGRLSDREIEDIIGWYQALWPPEVYERWRKANASETAPSG
>NZ_AP014879.1|WP_096361367.1|2416872_2417358_-|cytochrome-c
MKARHLHAITGLLLLSACSDSPKSAAVAPEPPPYDARLVTPHGLDARLVARGGDIFKANCAVCHGANAEGAPNWQRKGPDGKLPPPPLDASGHAWHHPGTWLRDTIRQGSVARGGNMPSWEGKLSDDDIAAVIAWIQSRWPEEIYRSWLALEEKARMGHAH
>NZ_AP014879.1|WP_096361368.1|2417504_2419160_+|hypothetical-protein
MLRLTEVRLGLNHRETELKAAILRALGIPGPELLGWHIRRRGYDARKSGEILLVYTLDVEVKDEAALLERLQHGHHVTLAPDETYRYPVRAPANPKTRPVVIGTGPCGIFAGLALARMGFRPVILERGKSVRERTQDVWSLWRERHLNPESNVQFGEGGAGTFSDGKLHTGIKDRGHHIRQLLKDFVDAGAPAEILYISKPHIGTLRLVKVVEQLREKILELGGEIRFESRVTDILVEDGDVQGRTSAAGGRMPRAAAVRGVTLAGGETIAADHVVLAVGHSARDTFEMLYRRGVHIEPKPFSIGFRIEHPQHLIDVCRLGKHAGNPVLGAADYKLVHHCRNGRDVYSFCMCPGGQVVAATSEAGRVVTNGMSHYSRNERNANAGIVVGITPADFGSHHPLAGIGLQQQLEQQAYVLGGSNYNAPAQLVGDFLAGRASTGPGSVIPSYTPGVTWTDLSTALPDYAIAAIREAIPAFEKQLKGFAMHDAVLTGVETRTSAPIRIARNENFESVNMQGLYPAGEGAGFAGGIISAAVDGMKVAEAVAQKIIQT
>NZ_AP014879.1|WP_096361369.1|2419386_2420277_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MPETLFQSDLKSLRLRNRGKVRDIYDVDDRHLLIVTTDRLSAFDVVLPDPVPGKGAVLTAMSNFWFARTRGIIPNQLTDTPLEQILRDPAERKQVEGRATLVKKLKALPVEAVVRGYLVGSGWKEYKSSGTVCGIRLPAGLKEADRLPEPIFTPSTKADIGQHDENISFDRAAELLGKDMAEKVKNASLTIYKECAAYALTRGIIIADTKFEFGLDEKGTLTLIDEVLTPDSSRFWPADSYKPGANPPSYDKQYVRDYLESIGWNKQPPAPKLPAEVLAKTAEKYREALTRLTGNM

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Crispr_ID: NZ_AP014879_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014879_2

2810977-2811071

Orphan

Consensus_repeat	Method
CCTGCCGGTGATCGTGCCGCTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014879_2

>merge|NZ_AP014879|2|2810977-2811071|CRISPRCasFinder
CGTGCCGCTGATCGTGCCGCTGTTGTCGATAGAACCTATATTTCCGCCGTAAACATAGATGCCGTACCCGCTGCCGCTGCTGGTGCCGCCGATGC

>NZ_AP014879|2|1|2810977-2811071|CRISPRCasFinder
CGTGCCGCTGATCGTGCCGCTGTTG	TCGATAGAACCTATATTTCCGCCGTAAACATAGATGCCGTACCC
GCTGCCGCTGCTGGTGCCGCCGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014879.1\|WP_096361727.1\|2817134_2817947_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_AP014879.1\|WP_096361728.1\|2817954_2818842_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_AP014879.1\|WP_148665106.1\|2813285_2814965_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_AP014879.1\|WP_096361717.1\|2799491_2800853_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_AP014879.1\|WP_096361720.1\|2804413_2806810_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
NZ_AP014879.1\|WP_096361729.1\|2818927_2819557_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_AP014879.1\|WP_096361719.1\|2803026_2804319_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|181265
NZ_AP014879.1\|WP_096361731.1\|2821128_2821365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014879.1\|WP_096361715.1\|2796833_2797757_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_AP014879.1\|WP_096361714.1\|2795907_2796834_+\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|180477
NZ_AP014879.1\|WP_096361733.1\|2822826_2825589_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_AP014879.1\|WP_096361723.1\|2808164_2808986_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|238574
NZ_AP014879.1\|WP_096361730.1\|2819673_2820954_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_AP014879.1\|WP_096361726.1\|2814969_2817132_+\|sulfotransferase-family-protein	unknown	unknown	gnl\|CDD\|379204
NZ_AP014879.1\|WP_096361722.1\|2807193_2808168_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
NZ_AP014879.1\|WP_096361732.1\|2821639_2822254_-\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_AP014879.1\|WP_096361734.1\|2825818_2826487_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_AP014879.1\|WP_096361716.1\|2797753_2799463_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341233
NZ_AP014879.1\|WP_096361718.1\|2800999_2803033_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236864
NZ_AP014879.1\|WP_172426063.1\|2806935_2807106_-\|rubredoxin	unknown	unknown	gnl\|CDD\|224687

Protein	Function_ID	Function_description	E-value
NZ_AP014879.1\|WP_096361727.1\|2817134_2817947_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	0.0051646
NZ_AP014879.1\|WP_096361728.1\|2817954_2818842_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.10981e-91
NZ_AP014879.1\|WP_148665106.1\|2813285_2814965_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	3.33986e-58
NZ_AP014879.1\|WP_096361717.1\|2799491_2800853_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	1.81972e-109
NZ_AP014879.1\|WP_096361720.1\|2804413_2806810_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_AP014879.1\|WP_096361729.1\|2818927_2819557_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	9.69786e-74
NZ_AP014879.1\|WP_096361719.1\|2803026_2804319_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|181265	PRK08170, PRK08170, acetyl-CoA C-acetyltransferase.	0
NZ_AP014879.1\|WP_096361715.1\|2796833_2797757_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	1.0731e-156
NZ_AP014879.1\|WP_096361714.1\|2795907_2796834_+\|malate-dehydrogenase	gnl\|CDD\|180477	PRK06223, PRK06223, malate dehydrogenase; Reviewed.	1.13877e-165
NZ_AP014879.1\|WP_096361733.1\|2822826_2825589_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_AP014879.1\|WP_096361723.1\|2808164_2808986_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	1.51597e-91
NZ_AP014879.1\|WP_096361730.1\|2819673_2820954_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_AP014879.1\|WP_096361726.1\|2814969_2817132_+\|sulfotransferase-family-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	5.05947e-49
NZ_AP014879.1\|WP_096361722.1\|2807193_2808168_+\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	1.18301e-139
NZ_AP014879.1\|WP_096361732.1\|2821639_2822254_-\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.68742e-26
NZ_AP014879.1\|WP_096361734.1\|2825818_2826487_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	5.19024e-58
NZ_AP014879.1\|WP_096361716.1\|2797753_2799463_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341233	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases. This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	2.27718e-163
NZ_AP014879.1\|WP_096361718.1\|2800999_2803033_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236864	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ.	0
NZ_AP014879.1\|WP_172426063.1\|2806935_2807106_-\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	8.07582e-22

>NZ_AP014879.1|WP_096361723.1|2808164_2808986_+|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MSATAPPVVLVFAGSDPTGGAGVTADVLTLASLGCHPAVVVTAVTAQDTTGIKQFTCTETELVIAQARAVLEDMPVAAFKIGMLGNSAVATAVAGIVEDYPDIPLILDPVQRSGRGDALADHMLDDALRSLLIPQSTLITPNSLEARALAPDADTLDACAQGLMSLGSEYVLVTGTHENTTEVIHRLYGNMRLLETFVFERLPGSYHGSGCTLASACAASLAHGLDPVNAVGEALRYTWETLKHSFRPGMGQPLPNRLYWAWEMDEPEGEDRD
>NZ_AP014879.1|WP_096361722.1|2807193_2808168_+|ferrochelatase
MSDRVAVVLCNLGGPDSLAAVRPFLFNLFSDPDIFRLPLGWLTQRPFASLIAWRRAPEAAHGYAAIGGKSPILEYTCAQAQALQQALADSGPFDVHVCMRYWHPLTDEVVAMLKQKNYARVILLPLYPQYSITTTGSAYNEFQRQCRRANYQPSVTLVRQWYDQPDYQAAIVNTLRAELKKFPDPDPARIELLFSAHGLPQKIVNGGDPYERQIRATYDALCAQLDWPHTTLCYQSRVGPLEWLRPYTDDVIREKAAAGVKQMLVYPIAFVSDHVETLFELGITYAELARAQGIAHYRVAPALNSHPGFIAALKSLVLNAVPAP
>NZ_AP014879.1|WP_172426063.1|2806935_2807106_-|rubredoxin
MGMKSYMCVICGYVYEEEKGRPEDGIPPGTRWEDVPENWKCPDCGAAKSDFEMIQI
>NZ_AP014879.1|WP_096361720.1|2804413_2806810_-|acyl-CoA-dehydrogenase
MAVVVVWGLAAQRVPGLVWATVLASVIALWDVFLDPPAPLWIAAWSVFVVIVLPLAFTPLRRVLISAPLLRVFRKIMPAMSDTEREALEAGTVWWEAELFGGDPDWEQLFNLPQPALSEEEQAFLDGPVEQLCAMLDDWDITHERRDLPPKVWRFLKDKGFFGMIIPKQYGGLEFSAQAHSAVVMKVASRSITAGVTVMVPNSLGPAELLLHYGTEKQKQHYLPRLARGQEVPCFALTGPEAGSDAANMPDRGVVCRETFKGKKNTLGIRLNWDKRYITLGPVATVLGLAFRLFDPEHLLGEEEDLGITLALIPTNTPGVKIGTRHNPLDIPFQNGPNWGENVFIPLDWVIGGRERIGQGWRMLMQSLAAGRSISLPALSCGAGKVACRATGAYARIRRQFKLPIGKFEAVEEGLGRIAGYTYLMEAARTLTARAVDLGEKPSVASAIVKYQLTEHMRRVVNDAMDIQGGSGICLGPRNFMGRAYQALPISITVEGANLLTRALIIYGQGAVRCHPYVLNEIRAVAEPDQKRAVKDFDEAIFGHVRYTISNIARAFWLGLTSARLVRAPVDGPTRRYLQKLTRLSTAFALISDIAMLTLGGALKRKEKISGRFADVLGFMYLASAVIKRFEDDGRPVEDIPLLHFACRYCLHEAEKTLVVILKNFPNRFLAWLVGGLAFPTGRRNHVPDDRMNHDCAALLLEPSPARDRLTRGIYLPTTTRAALGRLEDALPRVIAAELLERRLTKLAEEQPLLHGDLESQLKAALEQNMLSNAEAKLVRAAVAARRAVIAVDDFEKI
>NZ_AP014879.1|WP_096361719.1|2803026_2804319_-|acetyl-CoA-C-acetyltransferase
MNRVFIVDGARTPFLKARAEPGPFSASDLAVASARPLLARQPFSATQLDEVIVGCVIPAADEANIARLIALRLGCGKRVPAHTVQRNCASGLQAIATAAERIQLGRSHLVLAGGTEAMSRAPIQWNSAMAGWLGKMLRARNPLQRLQALARFRPSLLKPVYALLLGLTDPLVKLSMGQTAEILAHHFGISRETQDVYALNSHKRLAAAFDAGHMNAEVETLYEVNERFYTEDTGLRRDTDLGQLAQLRPVFDRKYGLVTSGNSSQVTDGAAMLVLASETAVKQHGLSVLGEWVDHEWAGVDPSQMGLGPVHAVAQLLVRQKMKMRDLQQLELNEAFAVQVLACQAAWDSAQYAREELGLDAPIGAMDPERLNPEGGAIANGHPVGASGARIVLHLLHALHRRGGGQGIATLCIGGGQGGAMLLRAEGHKS
>NZ_AP014879.1|WP_096361718.1|2800999_2803033_-|enoyl-CoA-hydratase/isomerase-family-protein
MMSHWHLDYHGDHALLTLDVQGQSANVLSQEVLNELDKHLDELETKMLAGLIIRSGKASGFIAGADVREFETIDDPARATEFARQGQQVYARLSGLPFATVAVIHGFCLGGGLELALACTYRIARDDPGTRLGLPEVRLGIHPGFAGSVRLPPLVGDMTALDMMLTGRTLSAREARRRGLVDETVPERHLLNAAVAFLKKHPVPGKAPWYRRVPAWKPLRQGVVKLMAPRVRRKAHPDHYPAPWRILDLWREQATEEREAESLGELLVSRASRNLVHVFLLGESLKRHGRAQAHDIEHVHIVGAGVMGADIAIWAASKGFRVSLQDREPAILARAVKRAYGFFKSKLKDARAVQEAMDRFMPDLEGHGLKRADLVIEAIVEKVGPKQELFRALEQKVRPQALLASNTSSIPLEVIGESLQDPSRLVGLHFFNPVAKMQLVEIVRGARTSEAALARARAFTGAIERLPLDVKSSPGFLVNRILMPYLLEAVKLVEEGVGVTTVDQAATQFGMPMGPIELADTVGLDICLSVAEELSGPLQVEVPARLRELVAQGQLGRKSGRGFYAYDKHGRRLTPAPEKSAVDVPVTERLVLRLLNEAVACLREGVVAGADAVDAGMVYGTGFAPFLGGPMRYVESLGVTGISHSLYRLAQEYGPRFNPDTGWSRPELFHRGMAGKV
>NZ_AP014879.1|WP_096361717.1|2799491_2800853_-|outer-membrane-protein-transport-protein
MNKRIRLLGSLGVMLSAYAVPGHAAFFQLAENSPAGLGNAFAGGAASAEDASTVWYNPAGMSRLPGGQTVVGGHVIMFSAKFSKSSATLSSTFGGGAISGGDGGDAGRTGLVPNVYYTQAIDDRLSFGLGVNAPFGLVTDYDDGWVGRYHADRSQVKTLNINPAASYRMNDQLSFGAGLNIQRIEAVLTNAVDYGTICAAVPGVQGCEAPGALDGNARVQADNTAFGFNLGALWQLGENTRIGLAYRSRIDHKLEGSSTLTAPNATAAATAAAIGIANSAVQAYVTLPETISISAFHQLNNSWSVMGDITRTRWSRFPELRIDFLDTTQSDSVVTFALEDVNRYSVGATYAPGGNWSYRAGVALDQSPTPNAEFRSARLPDADRKWITLGVSHRSSESMSLDFSYAHIWVDNTDINKSAGTSATNENFLRGNLVGSYDANINILSAQARWAFK
>NZ_AP014879.1|WP_096361716.1|2797753_2799463_-|long-chain-fatty-acid--CoA-ligase
MNLTDQSSLSDLFVERVRETPDAPAYRQFDGSGWKDLTWGETGREVMRWQAAFRKEGLKAGDRVALCLHNRVEWVLFDQAALGLGLVTVPLYFDDRPDNMAWCLNDAGARLLLLEDGRMWAGLRDQVKTIERVVSLDAADAGGDKKVTGLEAWLPPAAEDMLARSAAAPNDLATIVYTSGTTGRPKGVMLSHRNILSNVLSAMKALPAYTTDRFLSFLPLSHMFERTCGYYSAMWAGAQTVYARSITLLADDIREQRPTILISVPRIFERIYSRMQEAMAPGSPKRKLFEKATEVGWRRFRGEAAFADKLLWPLLKLLVAKKLYRRLGGRIRMIVVGGAAFAPHLSRVFIGLGLPIIQGYGLTETSPVLAANRMNDNDPTSVGRALEGIELRCDDKGELLARGPCVMLGYWNKPEATAAMIDRDGWLHTGDLVAIRGGNVYITGRVKDIIVLSNGEKVPPTDAEAAILRDAAFEQVMVVGEGRPKLGLLAVSKITDAGELCRRANAQLRDFPGYARIHHLARMADPWTVENGLLTPTLKAKRNEIEKRYAREIEAMYAGPDLCQPKNNG
>NZ_AP014879.1|WP_096361715.1|2796833_2797757_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MPRRSCRRTLGTVAETIRAVARRFRRAKLYFGHGTETAQDEAAWLVGHALKLAPDKLAGRLNQPVTPATLKKIDALATVRIQTRRPLAYLLKEAWFAGRKFYVDERVIVPRSLTGEFITEQFQPWIDAKRVQRILDLCTGSGCMAIACAQAFPRARVDAADISAEALAVARLNVKRHRLGRRVQLVRSDLFRALKGRNYDVIVTNPPYVAHTEMKTLPREYLHEPELALVSGRQGLDAIVRILADAPRHLNPGGILVGEVGNSAETLQRKFPSVPFVWLTTSTGDESVFLLTAEELIRQRRAFRTAG
>NZ_AP014879.1|WP_096361714.1|2795907_2796834_+|malate-dehydrogenase
MKKITIVGAGRVGESTAHNLAKHETCREVMLIDIKEGVPQGTALDIQESAPIYDFDTRLAGSNDLKDMAGSNMVVITAGVPRKPGMSRSDVLDTNLAVLYGIVDEVKKHAPQAMLLIVSNPVDVLTYAAWKRSGFERRHVFGMAGVLDSARMASFVALETGFSVKDVSAMVLGGHGDTMVPMTRFATINGIPIDHFLSKEQIEKIVKRTREGGAEILSLRKTASAYDAPAAAIASMIDAISRNRRHILPAVAVLEGEYGLTDICMGVPCVFGEHGIEKVIELPLSAQEAAEFRKSAETVRADLAKLKK
>NZ_AP014879.1|WP_148665106.1|2813285_2814965_+|sulfotransferase
MNRPALKADEAMLLAERHKRNGQLAEAEAALRQIVDSTPDHHAAWHLLGLIAFEVGKLPLSAELIAHAVRLNDAVALYHRNLGELCRRLGRLDEAVAAGRRATKLAPNDLEAHYNLGLALTDKGEWDAAIRAYRRALELNPDHGLSWNNLGAALEKKGDLAGAEAAYARAVALNPAHHEAQNNLGAIYSLQGRLEDARRCFEDSIKANPDFVEPHFNLSSLKTYRADDPQLRHLERNLAKAGAMPVPARIRYWFALGKAREDVGRYDDAFAAYAEGNRLQHELLPCDEARADDMLARLIAVFDRDFFAARRDVPGGDKTPIFIVGMPRSGTTLLEQILASHPAVHGAGELPDLNQVIMDAPARAGRRFPDFVPDLVPDDFKHMGEAYVERVWRLAPGARYITDKMPANFFHIGMIRLMLPNAKIIHAMRDPMDSCFSNYARLFNDTMEFAYDLGTLGRYYVRYISLMRHWHAVLPAGSILDLRYEDLVADPEGQTRRLLDYLGLPWDDNCLAFHRNKRHVKTASVAQVRQPIYKTSVARWRHFENHLQPLLAIVQAYRQ
>NZ_AP014879.1|WP_096361726.1|2814969_2817132_+|sulfotransferase-family-protein
MKKPPSPSDLLAEPIVPGARSQPQPLSIEQALVLATQHQSQGRLAEAERVLRQILQVQPHHAFALHLLGVIAHQAGKPDLAIKLIEEAIRHNGDVALFHSNLGEMYRQAGRLDDAIRHGERAVALDPRMVAAHGNLGIACYDRKDYDRAEACQRRALALEPRFAPALNNLGSICRARKQPDEAMDWYRQAIAANPQYVESLSNLGAVLLEEERADEAVEPLEQALRLNPNHAEALCNLGMVRNVLDQYDAALPLFRKALRLRPDYAEAYIGLARFHHEQEHLAEAERCARRAVELAPQKAEMCGQLGNIYTEMARSDEARAMFEKALAIDPGCHEALLGLGHLCMERGDMDQAEALFHQALALKQDSLPARFHLAQVRKVTAGDANLAALEAAEQAARDPAHPLSAKKWITLHFALGKSYDDSQQYDQAFPHFLEGCRLKRATYDYDAEAVTQHFDSIMRTFSRETLERLRGAGDASTVPIFVLGMPRSGTTLTEQILASHPDVHGAGELPDLLAIAQRPVNGAGYPENLLAIDRAQLTAWGTDYVAGLRRRAPEAKHITDKMPANFFAVGLIHLMLPNAKIIHVNRNPVDTCLSCFTRLFNRKQNQTYDLAELGRYYVDYVQLMNHWRALLPAGAFLDVQYEDIVAHPETQARRLLDYGGLDWNAACLDFHKHQRSIRTASVTQVRQPIYKTSVERWRHYEKYLDPLLDALGDLAPGRN
>NZ_AP014879.1|WP_096361727.1|2817134_2817947_+|alpha/beta-hydrolase
MRQALVVLLLALTGCAGLSPQARWEHAEQLAARSDWQKLRLPTDSFILSAYVPRHTIPADTLTVYIEGDGQAWLTRSQAASDPTPRNPVALELALRHPWGAAAYLARPCQYVDAADAKNCRPAFWTAGRFAPPVIEASSQAIDALKQRVGATRLVLVGYSGGGAVAALVAARRNDVIRLVTVAGNLDHRAWTAMHGLPALADSLNPADAWHALRTLPQRHFVGGRDAVVGRRVTDAFLARFPPDQQPEVVTLPDFDHVCCWVERWDSIGF
>NZ_AP014879.1|WP_096361728.1|2817954_2818842_-|PhzF-family-phenazine-biosynthesis-protein
MHKPKFFITDVFTSRKYGGNPLATFIDCESLSSQEMQRIAREINFSETTFITSRQPQDGGYDVRIFTPRAEVEFAGHPTLGTAYVIREKLRLTTASEVVLNLRAGKIPVTFYEVSGQASRLWMRQMPPRFGKRLEAGTLARLLGLAASDIAPDFPVEEVSTGFPTLVVPLASLAALRRIKINRDEYFALANDAWAKIILAFSREAYEAGQHLSVRVFADFYGIPEDAATGSSNGALAAYLARHELFGAPNIDVTVGQGYEMGRPSDLALRTNNTKGEIEVSVGGSVVEVAEGVWG
>NZ_AP014879.1|WP_096361729.1|2818927_2819557_+|thiamine-phosphate-synthase
MVSQLHVAGLYVIADTHYLDDTRLIDAVAQAIAGGARVIQYRDKKHAATERTRQASELAALCRRRGALFIVNDDVALAKETRADGVHLGREDVPLAEARKLLGARAIIGVSCYNELARAEAAEKQEADYIAFGRFFPSRTKPQAVQAGLDLLREAKKKLHIPVVAIGGITPENGASLIAAGADALAVIEGVFGQADVRNAAERYAQLFK
>NZ_AP014879.1|WP_096361730.1|2819673_2820954_+|glutamate-1-semialdehyde-2,1-aminomutase
MTTSSDLFKRAQKCIPGGVNSPVRAFKGVGGDPVFFARGQGAYVWDEDGKRYIDYVGSWGPMILGHAHPRVMAAVKETMEYGLGFGAPTRIEVDMAELICRLVPSIKKVRMVSSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADSLLVKAGSGALTLGVPTSPGVPADLASHTLTLEYNNAAQARELFGKIGKDIACVIVEPVAGNMNCVPPVPGFLEALRELCTQHGAVLIFDEVMTGFRVALGGAQAHYGIQPDLTTLGKVIGGGLPVGAFGGRADIMARLAPEGPVYQAGTLSGNPVSLAAGMATLREISQPGFFEALTAKTAMLARGLAERAQRAGVALVTQQVGGMFGIFFTKGKSVTSFAQVMACDVERFKKFFHGMLREGVYLAPSAFETGFVSAAHTESDIDETLDKAEKVFKTL
>NZ_AP014879.1|WP_096361731.1|2821128_2821365_-|hypothetical-protein
MLSHIVNLVNDYQVVHGARPNVVYMNETHYGYLREELPGVRDHDNLVAILGVDIALSDEAIRPQVATVRFASENILVS
>NZ_AP014879.1|WP_096361732.1|2821639_2822254_-|cytochrome-c4
MKNMLSVATAMSLWLVMIAPAQAANGNVAAGQAKAAVCAGCHGADGNGGADPLWPKLAGQDSAYIAKQLADFKSGARKDPIMAGMAAPLSAADMKNIGAYFASLKPKPGAAQDAQLAKQGEKVYRGGDAKMGVSACMSCHGPSGHGIPPRFPKVSGQNAAYTRKQMLAFKAGSRANDGEIMTRIAFRMSEQEIKAVSEYMAGLH
>NZ_AP014879.1|WP_096361733.1|2822826_2825589_-|DNA-polymerase-I
MSPKAGDRKKPANKASKVSADGKKGGPLVLVDGSSYLYRAFHAMPALANSRGEPTGAVYGVTNMLRRLLADYDTEYMAVVFDARGKTFRDDIYPEYKAHRPPMPDDLSIQIEPIHAIVRALGLPLIQVEGVEADDVIGTLARAAAAEGREAVISTGDKDMAQLVDRHVQLVDTMKDAVSDRDAVIEKFGVPPERIIDYLALVGDTSDNIPGVPGVGPKTAAKWLQEYGSLDAVMAHANDVPGKAGESLRASLGHLPMARQLATIKCDVDLKLAPGDLRRAAPDAARLRELFSRLEFKSWLAELGGANAPAAAATPATTNAKYQMITDMPALDAWLARLAQSKLFAFDTETTSLDAMQAEIVGVSFTDRAGEGAYVPLAHEYPGAPEQLGRDAVLEKLKPLLEDESRPKIGQNFKYDMSVLANYDIRLAGMRYDTMLESYVLDSTASRHDMDSLALKYLGYKTVKYEEVAGKGKHQINFREVPLDTATAYAAEDADITFRLHQHLWPRLKETPTLVKLFDEIEMPLVPVLARMERHGVLIDVAMLRAQSHELGKRLLELETEAYKLAGQPFNMGSPKQIQEVLYDKHKLPVLKKTPTGQPSTAEEVLQELALDYPLPQLILDYRSLAKLKSTYTDKLPEMIDPKTGRVHTSYHQAVAATGRLSSTDPNLQNIPVRTAEGRRIRQAFIAAPGYRIMSADYSQIELRIMAHLSGDKGLIHAFANNMDVHRATAAEVFGVAPDLVSDDMRRAAKAINFGLIYGMSAFGLAKQLRIERVAAQEYVERYFARYPGVREFMERTRETARRQGYVETLFGRRLHTAEINAANMNRRQAAERAAINAPMQGTAADLIKRAMIVVDAWIPRSGLDIRMIMQVHDELVFEVAETAVDTARKHVRAAMSGVATLSVPLVVDIGVGGNWDEAH
>NZ_AP014879.1|WP_096361734.1|2825818_2826487_+|TIGR00730-family-Rossman-fold-protein
MSRESWKIFQIMAEFVAGYEQLAQIQPSVSIFGSARTSPGHPYYALTEEVARKLSDAGFSVVSGGGPGLMEAANKGAYAGKSPSVGLNIRLPHEQHANRYQNITLTFQHFFARKVMFVKYAKAYIGMPGGFGTLDELVEALTLIQTGKTTRMPVILVHAPFWSGLLDWFKGTLVREGVIDKDDMDLVTVVNTADEVLDVIFRYYEETGFEASEAEQEIKLNL

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Crispr_ID: NZ_AP014879_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014879_3

2811388-2811482

Orphan

Consensus_repeat	Method
CCTGCCGGTGATCGTGCCGCTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP014879_3

>merge|NZ_AP014879|3|2811388-2811482|CRISPRCasFinder
CCTGCCGGTGATCGTGCCGCTGTTGACGATGCTGCCCGCTTCGCTGCTGGAGAGATAAATGCCGTTCGAACCGCCGGTGATCGTGCCGCTGTTGG

>NZ_AP014879|3|2|2811388-2811482|CRISPRCasFinder
CCTGCCGGTGATCGTGCCGCTGTTG	ACGATGCTGCCCGCTTCGCTGCTGGAGAGATAAATGCCGTTCGA
ACCGCCGGTGATCGTGCCGCTGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014879.1\|WP_096361727.1\|2817134_2817947_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_AP014879.1\|WP_096361728.1\|2817954_2818842_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_AP014879.1\|WP_148665106.1\|2813285_2814965_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_AP014879.1\|WP_096361717.1\|2799491_2800853_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_AP014879.1\|WP_096361720.1\|2804413_2806810_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
NZ_AP014879.1\|WP_096361729.1\|2818927_2819557_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_AP014879.1\|WP_096361719.1\|2803026_2804319_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|181265
NZ_AP014879.1\|WP_096361731.1\|2821128_2821365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014879.1\|WP_096361715.1\|2796833_2797757_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_AP014879.1\|WP_096361714.1\|2795907_2796834_+\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|180477
NZ_AP014879.1\|WP_096361733.1\|2822826_2825589_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_AP014879.1\|WP_096361723.1\|2808164_2808986_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|238574
NZ_AP014879.1\|WP_096361730.1\|2819673_2820954_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_AP014879.1\|WP_096361726.1\|2814969_2817132_+\|sulfotransferase-family-protein	unknown	unknown	gnl\|CDD\|379204
NZ_AP014879.1\|WP_096361722.1\|2807193_2808168_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
NZ_AP014879.1\|WP_096361732.1\|2821639_2822254_-\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_AP014879.1\|WP_096361734.1\|2825818_2826487_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_AP014879.1\|WP_096361716.1\|2797753_2799463_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341233
NZ_AP014879.1\|WP_096361718.1\|2800999_2803033_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236864
NZ_AP014879.1\|WP_172426063.1\|2806935_2807106_-\|rubredoxin	unknown	unknown	gnl\|CDD\|224687

Protein	Function_ID	Function_description	E-value
NZ_AP014879.1\|WP_096361727.1\|2817134_2817947_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	0.0051646
NZ_AP014879.1\|WP_096361728.1\|2817954_2818842_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.10981e-91
NZ_AP014879.1\|WP_148665106.1\|2813285_2814965_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	3.33986e-58
NZ_AP014879.1\|WP_096361717.1\|2799491_2800853_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	1.81972e-109
NZ_AP014879.1\|WP_096361720.1\|2804413_2806810_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_AP014879.1\|WP_096361729.1\|2818927_2819557_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	9.69786e-74
NZ_AP014879.1\|WP_096361719.1\|2803026_2804319_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|181265	PRK08170, PRK08170, acetyl-CoA C-acetyltransferase.	0
NZ_AP014879.1\|WP_096361715.1\|2796833_2797757_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	1.0731e-156
NZ_AP014879.1\|WP_096361714.1\|2795907_2796834_+\|malate-dehydrogenase	gnl\|CDD\|180477	PRK06223, PRK06223, malate dehydrogenase; Reviewed.	1.13877e-165
NZ_AP014879.1\|WP_096361733.1\|2822826_2825589_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_AP014879.1\|WP_096361723.1\|2808164_2808986_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	1.51597e-91
NZ_AP014879.1\|WP_096361730.1\|2819673_2820954_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_AP014879.1\|WP_096361726.1\|2814969_2817132_+\|sulfotransferase-family-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	5.05947e-49
NZ_AP014879.1\|WP_096361722.1\|2807193_2808168_+\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	1.18301e-139
NZ_AP014879.1\|WP_096361732.1\|2821639_2822254_-\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.68742e-26
NZ_AP014879.1\|WP_096361734.1\|2825818_2826487_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	5.19024e-58
NZ_AP014879.1\|WP_096361716.1\|2797753_2799463_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341233	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases. This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	2.27718e-163
NZ_AP014879.1\|WP_096361718.1\|2800999_2803033_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236864	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ.	0
NZ_AP014879.1\|WP_172426063.1\|2806935_2807106_-\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	8.07582e-22

>NZ_AP014879.1|WP_096361723.1|2808164_2808986_+|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MSATAPPVVLVFAGSDPTGGAGVTADVLTLASLGCHPAVVVTAVTAQDTTGIKQFTCTETELVIAQARAVLEDMPVAAFKIGMLGNSAVATAVAGIVEDYPDIPLILDPVQRSGRGDALADHMLDDALRSLLIPQSTLITPNSLEARALAPDADTLDACAQGLMSLGSEYVLVTGTHENTTEVIHRLYGNMRLLETFVFERLPGSYHGSGCTLASACAASLAHGLDPVNAVGEALRYTWETLKHSFRPGMGQPLPNRLYWAWEMDEPEGEDRD
>NZ_AP014879.1|WP_096361722.1|2807193_2808168_+|ferrochelatase
MSDRVAVVLCNLGGPDSLAAVRPFLFNLFSDPDIFRLPLGWLTQRPFASLIAWRRAPEAAHGYAAIGGKSPILEYTCAQAQALQQALADSGPFDVHVCMRYWHPLTDEVVAMLKQKNYARVILLPLYPQYSITTTGSAYNEFQRQCRRANYQPSVTLVRQWYDQPDYQAAIVNTLRAELKKFPDPDPARIELLFSAHGLPQKIVNGGDPYERQIRATYDALCAQLDWPHTTLCYQSRVGPLEWLRPYTDDVIREKAAAGVKQMLVYPIAFVSDHVETLFELGITYAELARAQGIAHYRVAPALNSHPGFIAALKSLVLNAVPAP
>NZ_AP014879.1|WP_172426063.1|2806935_2807106_-|rubredoxin
MGMKSYMCVICGYVYEEEKGRPEDGIPPGTRWEDVPENWKCPDCGAAKSDFEMIQI
>NZ_AP014879.1|WP_096361720.1|2804413_2806810_-|acyl-CoA-dehydrogenase
MAVVVVWGLAAQRVPGLVWATVLASVIALWDVFLDPPAPLWIAAWSVFVVIVLPLAFTPLRRVLISAPLLRVFRKIMPAMSDTEREALEAGTVWWEAELFGGDPDWEQLFNLPQPALSEEEQAFLDGPVEQLCAMLDDWDITHERRDLPPKVWRFLKDKGFFGMIIPKQYGGLEFSAQAHSAVVMKVASRSITAGVTVMVPNSLGPAELLLHYGTEKQKQHYLPRLARGQEVPCFALTGPEAGSDAANMPDRGVVCRETFKGKKNTLGIRLNWDKRYITLGPVATVLGLAFRLFDPEHLLGEEEDLGITLALIPTNTPGVKIGTRHNPLDIPFQNGPNWGENVFIPLDWVIGGRERIGQGWRMLMQSLAAGRSISLPALSCGAGKVACRATGAYARIRRQFKLPIGKFEAVEEGLGRIAGYTYLMEAARTLTARAVDLGEKPSVASAIVKYQLTEHMRRVVNDAMDIQGGSGICLGPRNFMGRAYQALPISITVEGANLLTRALIIYGQGAVRCHPYVLNEIRAVAEPDQKRAVKDFDEAIFGHVRYTISNIARAFWLGLTSARLVRAPVDGPTRRYLQKLTRLSTAFALISDIAMLTLGGALKRKEKISGRFADVLGFMYLASAVIKRFEDDGRPVEDIPLLHFACRYCLHEAEKTLVVILKNFPNRFLAWLVGGLAFPTGRRNHVPDDRMNHDCAALLLEPSPARDRLTRGIYLPTTTRAALGRLEDALPRVIAAELLERRLTKLAEEQPLLHGDLESQLKAALEQNMLSNAEAKLVRAAVAARRAVIAVDDFEKI
>NZ_AP014879.1|WP_096361719.1|2803026_2804319_-|acetyl-CoA-C-acetyltransferase
MNRVFIVDGARTPFLKARAEPGPFSASDLAVASARPLLARQPFSATQLDEVIVGCVIPAADEANIARLIALRLGCGKRVPAHTVQRNCASGLQAIATAAERIQLGRSHLVLAGGTEAMSRAPIQWNSAMAGWLGKMLRARNPLQRLQALARFRPSLLKPVYALLLGLTDPLVKLSMGQTAEILAHHFGISRETQDVYALNSHKRLAAAFDAGHMNAEVETLYEVNERFYTEDTGLRRDTDLGQLAQLRPVFDRKYGLVTSGNSSQVTDGAAMLVLASETAVKQHGLSVLGEWVDHEWAGVDPSQMGLGPVHAVAQLLVRQKMKMRDLQQLELNEAFAVQVLACQAAWDSAQYAREELGLDAPIGAMDPERLNPEGGAIANGHPVGASGARIVLHLLHALHRRGGGQGIATLCIGGGQGGAMLLRAEGHKS
>NZ_AP014879.1|WP_096361718.1|2800999_2803033_-|enoyl-CoA-hydratase/isomerase-family-protein
MMSHWHLDYHGDHALLTLDVQGQSANVLSQEVLNELDKHLDELETKMLAGLIIRSGKASGFIAGADVREFETIDDPARATEFARQGQQVYARLSGLPFATVAVIHGFCLGGGLELALACTYRIARDDPGTRLGLPEVRLGIHPGFAGSVRLPPLVGDMTALDMMLTGRTLSAREARRRGLVDETVPERHLLNAAVAFLKKHPVPGKAPWYRRVPAWKPLRQGVVKLMAPRVRRKAHPDHYPAPWRILDLWREQATEEREAESLGELLVSRASRNLVHVFLLGESLKRHGRAQAHDIEHVHIVGAGVMGADIAIWAASKGFRVSLQDREPAILARAVKRAYGFFKSKLKDARAVQEAMDRFMPDLEGHGLKRADLVIEAIVEKVGPKQELFRALEQKVRPQALLASNTSSIPLEVIGESLQDPSRLVGLHFFNPVAKMQLVEIVRGARTSEAALARARAFTGAIERLPLDVKSSPGFLVNRILMPYLLEAVKLVEEGVGVTTVDQAATQFGMPMGPIELADTVGLDICLSVAEELSGPLQVEVPARLRELVAQGQLGRKSGRGFYAYDKHGRRLTPAPEKSAVDVPVTERLVLRLLNEAVACLREGVVAGADAVDAGMVYGTGFAPFLGGPMRYVESLGVTGISHSLYRLAQEYGPRFNPDTGWSRPELFHRGMAGKV
>NZ_AP014879.1|WP_096361717.1|2799491_2800853_-|outer-membrane-protein-transport-protein
MNKRIRLLGSLGVMLSAYAVPGHAAFFQLAENSPAGLGNAFAGGAASAEDASTVWYNPAGMSRLPGGQTVVGGHVIMFSAKFSKSSATLSSTFGGGAISGGDGGDAGRTGLVPNVYYTQAIDDRLSFGLGVNAPFGLVTDYDDGWVGRYHADRSQVKTLNINPAASYRMNDQLSFGAGLNIQRIEAVLTNAVDYGTICAAVPGVQGCEAPGALDGNARVQADNTAFGFNLGALWQLGENTRIGLAYRSRIDHKLEGSSTLTAPNATAAATAAAIGIANSAVQAYVTLPETISISAFHQLNNSWSVMGDITRTRWSRFPELRIDFLDTTQSDSVVTFALEDVNRYSVGATYAPGGNWSYRAGVALDQSPTPNAEFRSARLPDADRKWITLGVSHRSSESMSLDFSYAHIWVDNTDINKSAGTSATNENFLRGNLVGSYDANINILSAQARWAFK
>NZ_AP014879.1|WP_096361716.1|2797753_2799463_-|long-chain-fatty-acid--CoA-ligase
MNLTDQSSLSDLFVERVRETPDAPAYRQFDGSGWKDLTWGETGREVMRWQAAFRKEGLKAGDRVALCLHNRVEWVLFDQAALGLGLVTVPLYFDDRPDNMAWCLNDAGARLLLLEDGRMWAGLRDQVKTIERVVSLDAADAGGDKKVTGLEAWLPPAAEDMLARSAAAPNDLATIVYTSGTTGRPKGVMLSHRNILSNVLSAMKALPAYTTDRFLSFLPLSHMFERTCGYYSAMWAGAQTVYARSITLLADDIREQRPTILISVPRIFERIYSRMQEAMAPGSPKRKLFEKATEVGWRRFRGEAAFADKLLWPLLKLLVAKKLYRRLGGRIRMIVVGGAAFAPHLSRVFIGLGLPIIQGYGLTETSPVLAANRMNDNDPTSVGRALEGIELRCDDKGELLARGPCVMLGYWNKPEATAAMIDRDGWLHTGDLVAIRGGNVYITGRVKDIIVLSNGEKVPPTDAEAAILRDAAFEQVMVVGEGRPKLGLLAVSKITDAGELCRRANAQLRDFPGYARIHHLARMADPWTVENGLLTPTLKAKRNEIEKRYAREIEAMYAGPDLCQPKNNG
>NZ_AP014879.1|WP_096361715.1|2796833_2797757_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MPRRSCRRTLGTVAETIRAVARRFRRAKLYFGHGTETAQDEAAWLVGHALKLAPDKLAGRLNQPVTPATLKKIDALATVRIQTRRPLAYLLKEAWFAGRKFYVDERVIVPRSLTGEFITEQFQPWIDAKRVQRILDLCTGSGCMAIACAQAFPRARVDAADISAEALAVARLNVKRHRLGRRVQLVRSDLFRALKGRNYDVIVTNPPYVAHTEMKTLPREYLHEPELALVSGRQGLDAIVRILADAPRHLNPGGILVGEVGNSAETLQRKFPSVPFVWLTTSTGDESVFLLTAEELIRQRRAFRTAG
>NZ_AP014879.1|WP_096361714.1|2795907_2796834_+|malate-dehydrogenase
MKKITIVGAGRVGESTAHNLAKHETCREVMLIDIKEGVPQGTALDIQESAPIYDFDTRLAGSNDLKDMAGSNMVVITAGVPRKPGMSRSDVLDTNLAVLYGIVDEVKKHAPQAMLLIVSNPVDVLTYAAWKRSGFERRHVFGMAGVLDSARMASFVALETGFSVKDVSAMVLGGHGDTMVPMTRFATINGIPIDHFLSKEQIEKIVKRTREGGAEILSLRKTASAYDAPAAAIASMIDAISRNRRHILPAVAVLEGEYGLTDICMGVPCVFGEHGIEKVIELPLSAQEAAEFRKSAETVRADLAKLKK
>NZ_AP014879.1|WP_148665106.1|2813285_2814965_+|sulfotransferase
MNRPALKADEAMLLAERHKRNGQLAEAEAALRQIVDSTPDHHAAWHLLGLIAFEVGKLPLSAELIAHAVRLNDAVALYHRNLGELCRRLGRLDEAVAAGRRATKLAPNDLEAHYNLGLALTDKGEWDAAIRAYRRALELNPDHGLSWNNLGAALEKKGDLAGAEAAYARAVALNPAHHEAQNNLGAIYSLQGRLEDARRCFEDSIKANPDFVEPHFNLSSLKTYRADDPQLRHLERNLAKAGAMPVPARIRYWFALGKAREDVGRYDDAFAAYAEGNRLQHELLPCDEARADDMLARLIAVFDRDFFAARRDVPGGDKTPIFIVGMPRSGTTLLEQILASHPAVHGAGELPDLNQVIMDAPARAGRRFPDFVPDLVPDDFKHMGEAYVERVWRLAPGARYITDKMPANFFHIGMIRLMLPNAKIIHAMRDPMDSCFSNYARLFNDTMEFAYDLGTLGRYYVRYISLMRHWHAVLPAGSILDLRYEDLVADPEGQTRRLLDYLGLPWDDNCLAFHRNKRHVKTASVAQVRQPIYKTSVARWRHFENHLQPLLAIVQAYRQ
>NZ_AP014879.1|WP_096361726.1|2814969_2817132_+|sulfotransferase-family-protein
MKKPPSPSDLLAEPIVPGARSQPQPLSIEQALVLATQHQSQGRLAEAERVLRQILQVQPHHAFALHLLGVIAHQAGKPDLAIKLIEEAIRHNGDVALFHSNLGEMYRQAGRLDDAIRHGERAVALDPRMVAAHGNLGIACYDRKDYDRAEACQRRALALEPRFAPALNNLGSICRARKQPDEAMDWYRQAIAANPQYVESLSNLGAVLLEEERADEAVEPLEQALRLNPNHAEALCNLGMVRNVLDQYDAALPLFRKALRLRPDYAEAYIGLARFHHEQEHLAEAERCARRAVELAPQKAEMCGQLGNIYTEMARSDEARAMFEKALAIDPGCHEALLGLGHLCMERGDMDQAEALFHQALALKQDSLPARFHLAQVRKVTAGDANLAALEAAEQAARDPAHPLSAKKWITLHFALGKSYDDSQQYDQAFPHFLEGCRLKRATYDYDAEAVTQHFDSIMRTFSRETLERLRGAGDASTVPIFVLGMPRSGTTLTEQILASHPDVHGAGELPDLLAIAQRPVNGAGYPENLLAIDRAQLTAWGTDYVAGLRRRAPEAKHITDKMPANFFAVGLIHLMLPNAKIIHVNRNPVDTCLSCFTRLFNRKQNQTYDLAELGRYYVDYVQLMNHWRALLPAGAFLDVQYEDIVAHPETQARRLLDYGGLDWNAACLDFHKHQRSIRTASVTQVRQPIYKTSVERWRHYEKYLDPLLDALGDLAPGRN
>NZ_AP014879.1|WP_096361727.1|2817134_2817947_+|alpha/beta-hydrolase
MRQALVVLLLALTGCAGLSPQARWEHAEQLAARSDWQKLRLPTDSFILSAYVPRHTIPADTLTVYIEGDGQAWLTRSQAASDPTPRNPVALELALRHPWGAAAYLARPCQYVDAADAKNCRPAFWTAGRFAPPVIEASSQAIDALKQRVGATRLVLVGYSGGGAVAALVAARRNDVIRLVTVAGNLDHRAWTAMHGLPALADSLNPADAWHALRTLPQRHFVGGRDAVVGRRVTDAFLARFPPDQQPEVVTLPDFDHVCCWVERWDSIGF
>NZ_AP014879.1|WP_096361728.1|2817954_2818842_-|PhzF-family-phenazine-biosynthesis-protein
MHKPKFFITDVFTSRKYGGNPLATFIDCESLSSQEMQRIAREINFSETTFITSRQPQDGGYDVRIFTPRAEVEFAGHPTLGTAYVIREKLRLTTASEVVLNLRAGKIPVTFYEVSGQASRLWMRQMPPRFGKRLEAGTLARLLGLAASDIAPDFPVEEVSTGFPTLVVPLASLAALRRIKINRDEYFALANDAWAKIILAFSREAYEAGQHLSVRVFADFYGIPEDAATGSSNGALAAYLARHELFGAPNIDVTVGQGYEMGRPSDLALRTNNTKGEIEVSVGGSVVEVAEGVWG
>NZ_AP014879.1|WP_096361729.1|2818927_2819557_+|thiamine-phosphate-synthase
MVSQLHVAGLYVIADTHYLDDTRLIDAVAQAIAGGARVIQYRDKKHAATERTRQASELAALCRRRGALFIVNDDVALAKETRADGVHLGREDVPLAEARKLLGARAIIGVSCYNELARAEAAEKQEADYIAFGRFFPSRTKPQAVQAGLDLLREAKKKLHIPVVAIGGITPENGASLIAAGADALAVIEGVFGQADVRNAAERYAQLFK
>NZ_AP014879.1|WP_096361730.1|2819673_2820954_+|glutamate-1-semialdehyde-2,1-aminomutase
MTTSSDLFKRAQKCIPGGVNSPVRAFKGVGGDPVFFARGQGAYVWDEDGKRYIDYVGSWGPMILGHAHPRVMAAVKETMEYGLGFGAPTRIEVDMAELICRLVPSIKKVRMVSSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADSLLVKAGSGALTLGVPTSPGVPADLASHTLTLEYNNAAQARELFGKIGKDIACVIVEPVAGNMNCVPPVPGFLEALRELCTQHGAVLIFDEVMTGFRVALGGAQAHYGIQPDLTTLGKVIGGGLPVGAFGGRADIMARLAPEGPVYQAGTLSGNPVSLAAGMATLREISQPGFFEALTAKTAMLARGLAERAQRAGVALVTQQVGGMFGIFFTKGKSVTSFAQVMACDVERFKKFFHGMLREGVYLAPSAFETGFVSAAHTESDIDETLDKAEKVFKTL
>NZ_AP014879.1|WP_096361731.1|2821128_2821365_-|hypothetical-protein
MLSHIVNLVNDYQVVHGARPNVVYMNETHYGYLREELPGVRDHDNLVAILGVDIALSDEAIRPQVATVRFASENILVS
>NZ_AP014879.1|WP_096361732.1|2821639_2822254_-|cytochrome-c4
MKNMLSVATAMSLWLVMIAPAQAANGNVAAGQAKAAVCAGCHGADGNGGADPLWPKLAGQDSAYIAKQLADFKSGARKDPIMAGMAAPLSAADMKNIGAYFASLKPKPGAAQDAQLAKQGEKVYRGGDAKMGVSACMSCHGPSGHGIPPRFPKVSGQNAAYTRKQMLAFKAGSRANDGEIMTRIAFRMSEQEIKAVSEYMAGLH
>NZ_AP014879.1|WP_096361733.1|2822826_2825589_-|DNA-polymerase-I
MSPKAGDRKKPANKASKVSADGKKGGPLVLVDGSSYLYRAFHAMPALANSRGEPTGAVYGVTNMLRRLLADYDTEYMAVVFDARGKTFRDDIYPEYKAHRPPMPDDLSIQIEPIHAIVRALGLPLIQVEGVEADDVIGTLARAAAAEGREAVISTGDKDMAQLVDRHVQLVDTMKDAVSDRDAVIEKFGVPPERIIDYLALVGDTSDNIPGVPGVGPKTAAKWLQEYGSLDAVMAHANDVPGKAGESLRASLGHLPMARQLATIKCDVDLKLAPGDLRRAAPDAARLRELFSRLEFKSWLAELGGANAPAAAATPATTNAKYQMITDMPALDAWLARLAQSKLFAFDTETTSLDAMQAEIVGVSFTDRAGEGAYVPLAHEYPGAPEQLGRDAVLEKLKPLLEDESRPKIGQNFKYDMSVLANYDIRLAGMRYDTMLESYVLDSTASRHDMDSLALKYLGYKTVKYEEVAGKGKHQINFREVPLDTATAYAAEDADITFRLHQHLWPRLKETPTLVKLFDEIEMPLVPVLARMERHGVLIDVAMLRAQSHELGKRLLELETEAYKLAGQPFNMGSPKQIQEVLYDKHKLPVLKKTPTGQPSTAEEVLQELALDYPLPQLILDYRSLAKLKSTYTDKLPEMIDPKTGRVHTSYHQAVAATGRLSSTDPNLQNIPVRTAEGRRIRQAFIAAPGYRIMSADYSQIELRIMAHLSGDKGLIHAFANNMDVHRATAAEVFGVAPDLVSDDMRRAAKAINFGLIYGMSAFGLAKQLRIERVAAQEYVERYFARYPGVREFMERTRETARRQGYVETLFGRRLHTAEINAANMNRRQAAERAAINAPMQGTAADLIKRAMIVVDAWIPRSGLDIRMIMQVHDELVFEVAETAVDTARKHVRAAMSGVATLSVPLVVDIGVGGNWDEAH
>NZ_AP014879.1|WP_096361734.1|2825818_2826487_+|TIGR00730-family-Rossman-fold-protein
MSRESWKIFQIMAEFVAGYEQLAQIQPSVSIFGSARTSPGHPYYALTEEVARKLSDAGFSVVSGGGPGLMEAANKGAYAGKSPSVGLNIRLPHEQHANRYQNITLTFQHFFARKVMFVKYAKAYIGMPGGFGTLDELVEALTLIQTGKTTRMPVILVHAPFWSGLLDWFKGTLVREGVIDKDDMDLVTVVNTADEVLDVIFRYYEETGFEASEAEQEIKLNL

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Crispr_ID: NZ_AP014879_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP014879_4

2811637-2811811

Orphan

Consensus_repeat	Method
CCTGCCGGTGATCGTGCCGCTGTTG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_AP014879_4

>merge|NZ_AP014879|4|2811637-2811811|CRISPRCasFinder
GCTGCGTGAGATCGTGCCGCCGGCGTTGTTGGTGATGCCGCCGGTGACGCTGCTGCCGTTATTGAGATATATCCCGCCCGTGATCGTGCCGCTGTTGGTGATACTGCCGCCGATGTTGCTGCTGGAGATATAGATAGCTGTATTCGCCCCCGTGCCGGTGCCGGTGCCGGTGCGG

>NZ_AP014879|4|3|2811637-2811811|CRISPRCasFinder
GCTGCGTGAGATCGTGCCGCCGGCG	TTGTTGGTGATGCCGCCGGTGACGCTGCTGCCGTTATTGAGATATAT
CCCGCCCGTGATCGTGCCGCTGTTG	GTGATACTGCCGCCGATGTTGCTGCTGGAGATATAGATAGCTGTATTCGCCCC
CGTGCCGGTGCCGGTGCCGGTGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP014879.1\|WP_096361727.1\|2817134_2817947_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_AP014879.1\|WP_096361728.1\|2817954_2818842_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_AP014879.1\|WP_148665106.1\|2813285_2814965_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_AP014879.1\|WP_096361717.1\|2799491_2800853_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NZ_AP014879.1\|WP_096361720.1\|2804413_2806810_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
NZ_AP014879.1\|WP_096361729.1\|2818927_2819557_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_AP014879.1\|WP_096361719.1\|2803026_2804319_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|181265
NZ_AP014879.1\|WP_096361731.1\|2821128_2821365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP014879.1\|WP_096361715.1\|2796833_2797757_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_AP014879.1\|WP_096361714.1\|2795907_2796834_+\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|180477
NZ_AP014879.1\|WP_096361733.1\|2822826_2825589_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_AP014879.1\|WP_096361723.1\|2808164_2808986_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|238574
NZ_AP014879.1\|WP_096361730.1\|2819673_2820954_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_AP014879.1\|WP_096361726.1\|2814969_2817132_+\|sulfotransferase-family-protein	unknown	unknown	gnl\|CDD\|379204
NZ_AP014879.1\|WP_096361722.1\|2807193_2808168_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|366291
NZ_AP014879.1\|WP_096361732.1\|2821639_2822254_-\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_AP014879.1\|WP_096361734.1\|2825818_2826487_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_AP014879.1\|WP_096361716.1\|2797753_2799463_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341233
NZ_AP014879.1\|WP_096361718.1\|2800999_2803033_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236864
NZ_AP014879.1\|WP_172426063.1\|2806935_2807106_-\|rubredoxin	unknown	unknown	gnl\|CDD\|224687

Protein	Function_ID	Function_description	E-value
NZ_AP014879.1\|WP_096361727.1\|2817134_2817947_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	0.0051646
NZ_AP014879.1\|WP_096361728.1\|2817954_2818842_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.10981e-91
NZ_AP014879.1\|WP_148665106.1\|2813285_2814965_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	3.33986e-58
NZ_AP014879.1\|WP_096361717.1\|2799491_2800853_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	1.81972e-109
NZ_AP014879.1\|WP_096361720.1\|2804413_2806810_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_AP014879.1\|WP_096361729.1\|2818927_2819557_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	9.69786e-74
NZ_AP014879.1\|WP_096361719.1\|2803026_2804319_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|181265	PRK08170, PRK08170, acetyl-CoA C-acetyltransferase.	0
NZ_AP014879.1\|WP_096361715.1\|2796833_2797757_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	1.0731e-156
NZ_AP014879.1\|WP_096361714.1\|2795907_2796834_+\|malate-dehydrogenase	gnl\|CDD\|180477	PRK06223, PRK06223, malate dehydrogenase; Reviewed.	1.13877e-165
NZ_AP014879.1\|WP_096361733.1\|2822826_2825589_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_AP014879.1\|WP_096361723.1\|2808164_2808986_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	1.51597e-91
NZ_AP014879.1\|WP_096361730.1\|2819673_2820954_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_AP014879.1\|WP_096361726.1\|2814969_2817132_+\|sulfotransferase-family-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	5.05947e-49
NZ_AP014879.1\|WP_096361722.1\|2807193_2808168_+\|ferrochelatase	gnl\|CDD\|366291	pfam00762, Ferrochelatase, Ferrochelatase.	1.18301e-139
NZ_AP014879.1\|WP_096361732.1\|2821639_2822254_-\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.68742e-26
NZ_AP014879.1\|WP_096361734.1\|2825818_2826487_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	5.19024e-58
NZ_AP014879.1\|WP_096361716.1\|2797753_2799463_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341233	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases. This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	2.27718e-163
NZ_AP014879.1\|WP_096361718.1\|2800999_2803033_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236864	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ.	0
NZ_AP014879.1\|WP_172426063.1\|2806935_2807106_-\|rubredoxin	gnl\|CDD\|224687	COG1773, COG1773, Rubredoxin [Energy production and conversion].	8.07582e-22

>NZ_AP014879.1|WP_096361723.1|2808164_2808986_+|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MSATAPPVVLVFAGSDPTGGAGVTADVLTLASLGCHPAVVVTAVTAQDTTGIKQFTCTETELVIAQARAVLEDMPVAAFKIGMLGNSAVATAVAGIVEDYPDIPLILDPVQRSGRGDALADHMLDDALRSLLIPQSTLITPNSLEARALAPDADTLDACAQGLMSLGSEYVLVTGTHENTTEVIHRLYGNMRLLETFVFERLPGSYHGSGCTLASACAASLAHGLDPVNAVGEALRYTWETLKHSFRPGMGQPLPNRLYWAWEMDEPEGEDRD
>NZ_AP014879.1|WP_096361722.1|2807193_2808168_+|ferrochelatase
MSDRVAVVLCNLGGPDSLAAVRPFLFNLFSDPDIFRLPLGWLTQRPFASLIAWRRAPEAAHGYAAIGGKSPILEYTCAQAQALQQALADSGPFDVHVCMRYWHPLTDEVVAMLKQKNYARVILLPLYPQYSITTTGSAYNEFQRQCRRANYQPSVTLVRQWYDQPDYQAAIVNTLRAELKKFPDPDPARIELLFSAHGLPQKIVNGGDPYERQIRATYDALCAQLDWPHTTLCYQSRVGPLEWLRPYTDDVIREKAAAGVKQMLVYPIAFVSDHVETLFELGITYAELARAQGIAHYRVAPALNSHPGFIAALKSLVLNAVPAP
>NZ_AP014879.1|WP_172426063.1|2806935_2807106_-|rubredoxin
MGMKSYMCVICGYVYEEEKGRPEDGIPPGTRWEDVPENWKCPDCGAAKSDFEMIQI
>NZ_AP014879.1|WP_096361720.1|2804413_2806810_-|acyl-CoA-dehydrogenase
MAVVVVWGLAAQRVPGLVWATVLASVIALWDVFLDPPAPLWIAAWSVFVVIVLPLAFTPLRRVLISAPLLRVFRKIMPAMSDTEREALEAGTVWWEAELFGGDPDWEQLFNLPQPALSEEEQAFLDGPVEQLCAMLDDWDITHERRDLPPKVWRFLKDKGFFGMIIPKQYGGLEFSAQAHSAVVMKVASRSITAGVTVMVPNSLGPAELLLHYGTEKQKQHYLPRLARGQEVPCFALTGPEAGSDAANMPDRGVVCRETFKGKKNTLGIRLNWDKRYITLGPVATVLGLAFRLFDPEHLLGEEEDLGITLALIPTNTPGVKIGTRHNPLDIPFQNGPNWGENVFIPLDWVIGGRERIGQGWRMLMQSLAAGRSISLPALSCGAGKVACRATGAYARIRRQFKLPIGKFEAVEEGLGRIAGYTYLMEAARTLTARAVDLGEKPSVASAIVKYQLTEHMRRVVNDAMDIQGGSGICLGPRNFMGRAYQALPISITVEGANLLTRALIIYGQGAVRCHPYVLNEIRAVAEPDQKRAVKDFDEAIFGHVRYTISNIARAFWLGLTSARLVRAPVDGPTRRYLQKLTRLSTAFALISDIAMLTLGGALKRKEKISGRFADVLGFMYLASAVIKRFEDDGRPVEDIPLLHFACRYCLHEAEKTLVVILKNFPNRFLAWLVGGLAFPTGRRNHVPDDRMNHDCAALLLEPSPARDRLTRGIYLPTTTRAALGRLEDALPRVIAAELLERRLTKLAEEQPLLHGDLESQLKAALEQNMLSNAEAKLVRAAVAARRAVIAVDDFEKI
>NZ_AP014879.1|WP_096361719.1|2803026_2804319_-|acetyl-CoA-C-acetyltransferase
MNRVFIVDGARTPFLKARAEPGPFSASDLAVASARPLLARQPFSATQLDEVIVGCVIPAADEANIARLIALRLGCGKRVPAHTVQRNCASGLQAIATAAERIQLGRSHLVLAGGTEAMSRAPIQWNSAMAGWLGKMLRARNPLQRLQALARFRPSLLKPVYALLLGLTDPLVKLSMGQTAEILAHHFGISRETQDVYALNSHKRLAAAFDAGHMNAEVETLYEVNERFYTEDTGLRRDTDLGQLAQLRPVFDRKYGLVTSGNSSQVTDGAAMLVLASETAVKQHGLSVLGEWVDHEWAGVDPSQMGLGPVHAVAQLLVRQKMKMRDLQQLELNEAFAVQVLACQAAWDSAQYAREELGLDAPIGAMDPERLNPEGGAIANGHPVGASGARIVLHLLHALHRRGGGQGIATLCIGGGQGGAMLLRAEGHKS
>NZ_AP014879.1|WP_096361718.1|2800999_2803033_-|enoyl-CoA-hydratase/isomerase-family-protein
MMSHWHLDYHGDHALLTLDVQGQSANVLSQEVLNELDKHLDELETKMLAGLIIRSGKASGFIAGADVREFETIDDPARATEFARQGQQVYARLSGLPFATVAVIHGFCLGGGLELALACTYRIARDDPGTRLGLPEVRLGIHPGFAGSVRLPPLVGDMTALDMMLTGRTLSAREARRRGLVDETVPERHLLNAAVAFLKKHPVPGKAPWYRRVPAWKPLRQGVVKLMAPRVRRKAHPDHYPAPWRILDLWREQATEEREAESLGELLVSRASRNLVHVFLLGESLKRHGRAQAHDIEHVHIVGAGVMGADIAIWAASKGFRVSLQDREPAILARAVKRAYGFFKSKLKDARAVQEAMDRFMPDLEGHGLKRADLVIEAIVEKVGPKQELFRALEQKVRPQALLASNTSSIPLEVIGESLQDPSRLVGLHFFNPVAKMQLVEIVRGARTSEAALARARAFTGAIERLPLDVKSSPGFLVNRILMPYLLEAVKLVEEGVGVTTVDQAATQFGMPMGPIELADTVGLDICLSVAEELSGPLQVEVPARLRELVAQGQLGRKSGRGFYAYDKHGRRLTPAPEKSAVDVPVTERLVLRLLNEAVACLREGVVAGADAVDAGMVYGTGFAPFLGGPMRYVESLGVTGISHSLYRLAQEYGPRFNPDTGWSRPELFHRGMAGKV
>NZ_AP014879.1|WP_096361717.1|2799491_2800853_-|outer-membrane-protein-transport-protein
MNKRIRLLGSLGVMLSAYAVPGHAAFFQLAENSPAGLGNAFAGGAASAEDASTVWYNPAGMSRLPGGQTVVGGHVIMFSAKFSKSSATLSSTFGGGAISGGDGGDAGRTGLVPNVYYTQAIDDRLSFGLGVNAPFGLVTDYDDGWVGRYHADRSQVKTLNINPAASYRMNDQLSFGAGLNIQRIEAVLTNAVDYGTICAAVPGVQGCEAPGALDGNARVQADNTAFGFNLGALWQLGENTRIGLAYRSRIDHKLEGSSTLTAPNATAAATAAAIGIANSAVQAYVTLPETISISAFHQLNNSWSVMGDITRTRWSRFPELRIDFLDTTQSDSVVTFALEDVNRYSVGATYAPGGNWSYRAGVALDQSPTPNAEFRSARLPDADRKWITLGVSHRSSESMSLDFSYAHIWVDNTDINKSAGTSATNENFLRGNLVGSYDANINILSAQARWAFK
>NZ_AP014879.1|WP_096361716.1|2797753_2799463_-|long-chain-fatty-acid--CoA-ligase
MNLTDQSSLSDLFVERVRETPDAPAYRQFDGSGWKDLTWGETGREVMRWQAAFRKEGLKAGDRVALCLHNRVEWVLFDQAALGLGLVTVPLYFDDRPDNMAWCLNDAGARLLLLEDGRMWAGLRDQVKTIERVVSLDAADAGGDKKVTGLEAWLPPAAEDMLARSAAAPNDLATIVYTSGTTGRPKGVMLSHRNILSNVLSAMKALPAYTTDRFLSFLPLSHMFERTCGYYSAMWAGAQTVYARSITLLADDIREQRPTILISVPRIFERIYSRMQEAMAPGSPKRKLFEKATEVGWRRFRGEAAFADKLLWPLLKLLVAKKLYRRLGGRIRMIVVGGAAFAPHLSRVFIGLGLPIIQGYGLTETSPVLAANRMNDNDPTSVGRALEGIELRCDDKGELLARGPCVMLGYWNKPEATAAMIDRDGWLHTGDLVAIRGGNVYITGRVKDIIVLSNGEKVPPTDAEAAILRDAAFEQVMVVGEGRPKLGLLAVSKITDAGELCRRANAQLRDFPGYARIHHLARMADPWTVENGLLTPTLKAKRNEIEKRYAREIEAMYAGPDLCQPKNNG
>NZ_AP014879.1|WP_096361715.1|2796833_2797757_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MPRRSCRRTLGTVAETIRAVARRFRRAKLYFGHGTETAQDEAAWLVGHALKLAPDKLAGRLNQPVTPATLKKIDALATVRIQTRRPLAYLLKEAWFAGRKFYVDERVIVPRSLTGEFITEQFQPWIDAKRVQRILDLCTGSGCMAIACAQAFPRARVDAADISAEALAVARLNVKRHRLGRRVQLVRSDLFRALKGRNYDVIVTNPPYVAHTEMKTLPREYLHEPELALVSGRQGLDAIVRILADAPRHLNPGGILVGEVGNSAETLQRKFPSVPFVWLTTSTGDESVFLLTAEELIRQRRAFRTAG
>NZ_AP014879.1|WP_096361714.1|2795907_2796834_+|malate-dehydrogenase
MKKITIVGAGRVGESTAHNLAKHETCREVMLIDIKEGVPQGTALDIQESAPIYDFDTRLAGSNDLKDMAGSNMVVITAGVPRKPGMSRSDVLDTNLAVLYGIVDEVKKHAPQAMLLIVSNPVDVLTYAAWKRSGFERRHVFGMAGVLDSARMASFVALETGFSVKDVSAMVLGGHGDTMVPMTRFATINGIPIDHFLSKEQIEKIVKRTREGGAEILSLRKTASAYDAPAAAIASMIDAISRNRRHILPAVAVLEGEYGLTDICMGVPCVFGEHGIEKVIELPLSAQEAAEFRKSAETVRADLAKLKK
>NZ_AP014879.1|WP_148665106.1|2813285_2814965_+|sulfotransferase
MNRPALKADEAMLLAERHKRNGQLAEAEAALRQIVDSTPDHHAAWHLLGLIAFEVGKLPLSAELIAHAVRLNDAVALYHRNLGELCRRLGRLDEAVAAGRRATKLAPNDLEAHYNLGLALTDKGEWDAAIRAYRRALELNPDHGLSWNNLGAALEKKGDLAGAEAAYARAVALNPAHHEAQNNLGAIYSLQGRLEDARRCFEDSIKANPDFVEPHFNLSSLKTYRADDPQLRHLERNLAKAGAMPVPARIRYWFALGKAREDVGRYDDAFAAYAEGNRLQHELLPCDEARADDMLARLIAVFDRDFFAARRDVPGGDKTPIFIVGMPRSGTTLLEQILASHPAVHGAGELPDLNQVIMDAPARAGRRFPDFVPDLVPDDFKHMGEAYVERVWRLAPGARYITDKMPANFFHIGMIRLMLPNAKIIHAMRDPMDSCFSNYARLFNDTMEFAYDLGTLGRYYVRYISLMRHWHAVLPAGSILDLRYEDLVADPEGQTRRLLDYLGLPWDDNCLAFHRNKRHVKTASVAQVRQPIYKTSVARWRHFENHLQPLLAIVQAYRQ
>NZ_AP014879.1|WP_096361726.1|2814969_2817132_+|sulfotransferase-family-protein
MKKPPSPSDLLAEPIVPGARSQPQPLSIEQALVLATQHQSQGRLAEAERVLRQILQVQPHHAFALHLLGVIAHQAGKPDLAIKLIEEAIRHNGDVALFHSNLGEMYRQAGRLDDAIRHGERAVALDPRMVAAHGNLGIACYDRKDYDRAEACQRRALALEPRFAPALNNLGSICRARKQPDEAMDWYRQAIAANPQYVESLSNLGAVLLEEERADEAVEPLEQALRLNPNHAEALCNLGMVRNVLDQYDAALPLFRKALRLRPDYAEAYIGLARFHHEQEHLAEAERCARRAVELAPQKAEMCGQLGNIYTEMARSDEARAMFEKALAIDPGCHEALLGLGHLCMERGDMDQAEALFHQALALKQDSLPARFHLAQVRKVTAGDANLAALEAAEQAARDPAHPLSAKKWITLHFALGKSYDDSQQYDQAFPHFLEGCRLKRATYDYDAEAVTQHFDSIMRTFSRETLERLRGAGDASTVPIFVLGMPRSGTTLTEQILASHPDVHGAGELPDLLAIAQRPVNGAGYPENLLAIDRAQLTAWGTDYVAGLRRRAPEAKHITDKMPANFFAVGLIHLMLPNAKIIHVNRNPVDTCLSCFTRLFNRKQNQTYDLAELGRYYVDYVQLMNHWRALLPAGAFLDVQYEDIVAHPETQARRLLDYGGLDWNAACLDFHKHQRSIRTASVTQVRQPIYKTSVERWRHYEKYLDPLLDALGDLAPGRN
>NZ_AP014879.1|WP_096361727.1|2817134_2817947_+|alpha/beta-hydrolase
MRQALVVLLLALTGCAGLSPQARWEHAEQLAARSDWQKLRLPTDSFILSAYVPRHTIPADTLTVYIEGDGQAWLTRSQAASDPTPRNPVALELALRHPWGAAAYLARPCQYVDAADAKNCRPAFWTAGRFAPPVIEASSQAIDALKQRVGATRLVLVGYSGGGAVAALVAARRNDVIRLVTVAGNLDHRAWTAMHGLPALADSLNPADAWHALRTLPQRHFVGGRDAVVGRRVTDAFLARFPPDQQPEVVTLPDFDHVCCWVERWDSIGF
>NZ_AP014879.1|WP_096361728.1|2817954_2818842_-|PhzF-family-phenazine-biosynthesis-protein
MHKPKFFITDVFTSRKYGGNPLATFIDCESLSSQEMQRIAREINFSETTFITSRQPQDGGYDVRIFTPRAEVEFAGHPTLGTAYVIREKLRLTTASEVVLNLRAGKIPVTFYEVSGQASRLWMRQMPPRFGKRLEAGTLARLLGLAASDIAPDFPVEEVSTGFPTLVVPLASLAALRRIKINRDEYFALANDAWAKIILAFSREAYEAGQHLSVRVFADFYGIPEDAATGSSNGALAAYLARHELFGAPNIDVTVGQGYEMGRPSDLALRTNNTKGEIEVSVGGSVVEVAEGVWG
>NZ_AP014879.1|WP_096361729.1|2818927_2819557_+|thiamine-phosphate-synthase
MVSQLHVAGLYVIADTHYLDDTRLIDAVAQAIAGGARVIQYRDKKHAATERTRQASELAALCRRRGALFIVNDDVALAKETRADGVHLGREDVPLAEARKLLGARAIIGVSCYNELARAEAAEKQEADYIAFGRFFPSRTKPQAVQAGLDLLREAKKKLHIPVVAIGGITPENGASLIAAGADALAVIEGVFGQADVRNAAERYAQLFK
>NZ_AP014879.1|WP_096361730.1|2819673_2820954_+|glutamate-1-semialdehyde-2,1-aminomutase
MTTSSDLFKRAQKCIPGGVNSPVRAFKGVGGDPVFFARGQGAYVWDEDGKRYIDYVGSWGPMILGHAHPRVMAAVKETMEYGLGFGAPTRIEVDMAELICRLVPSIKKVRMVSSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADSLLVKAGSGALTLGVPTSPGVPADLASHTLTLEYNNAAQARELFGKIGKDIACVIVEPVAGNMNCVPPVPGFLEALRELCTQHGAVLIFDEVMTGFRVALGGAQAHYGIQPDLTTLGKVIGGGLPVGAFGGRADIMARLAPEGPVYQAGTLSGNPVSLAAGMATLREISQPGFFEALTAKTAMLARGLAERAQRAGVALVTQQVGGMFGIFFTKGKSVTSFAQVMACDVERFKKFFHGMLREGVYLAPSAFETGFVSAAHTESDIDETLDKAEKVFKTL
>NZ_AP014879.1|WP_096361731.1|2821128_2821365_-|hypothetical-protein
MLSHIVNLVNDYQVVHGARPNVVYMNETHYGYLREELPGVRDHDNLVAILGVDIALSDEAIRPQVATVRFASENILVS
>NZ_AP014879.1|WP_096361732.1|2821639_2822254_-|cytochrome-c4
MKNMLSVATAMSLWLVMIAPAQAANGNVAAGQAKAAVCAGCHGADGNGGADPLWPKLAGQDSAYIAKQLADFKSGARKDPIMAGMAAPLSAADMKNIGAYFASLKPKPGAAQDAQLAKQGEKVYRGGDAKMGVSACMSCHGPSGHGIPPRFPKVSGQNAAYTRKQMLAFKAGSRANDGEIMTRIAFRMSEQEIKAVSEYMAGLH
>NZ_AP014879.1|WP_096361733.1|2822826_2825589_-|DNA-polymerase-I
MSPKAGDRKKPANKASKVSADGKKGGPLVLVDGSSYLYRAFHAMPALANSRGEPTGAVYGVTNMLRRLLADYDTEYMAVVFDARGKTFRDDIYPEYKAHRPPMPDDLSIQIEPIHAIVRALGLPLIQVEGVEADDVIGTLARAAAAEGREAVISTGDKDMAQLVDRHVQLVDTMKDAVSDRDAVIEKFGVPPERIIDYLALVGDTSDNIPGVPGVGPKTAAKWLQEYGSLDAVMAHANDVPGKAGESLRASLGHLPMARQLATIKCDVDLKLAPGDLRRAAPDAARLRELFSRLEFKSWLAELGGANAPAAAATPATTNAKYQMITDMPALDAWLARLAQSKLFAFDTETTSLDAMQAEIVGVSFTDRAGEGAYVPLAHEYPGAPEQLGRDAVLEKLKPLLEDESRPKIGQNFKYDMSVLANYDIRLAGMRYDTMLESYVLDSTASRHDMDSLALKYLGYKTVKYEEVAGKGKHQINFREVPLDTATAYAAEDADITFRLHQHLWPRLKETPTLVKLFDEIEMPLVPVLARMERHGVLIDVAMLRAQSHELGKRLLELETEAYKLAGQPFNMGSPKQIQEVLYDKHKLPVLKKTPTGQPSTAEEVLQELALDYPLPQLILDYRSLAKLKSTYTDKLPEMIDPKTGRVHTSYHQAVAATGRLSSTDPNLQNIPVRTAEGRRIRQAFIAAPGYRIMSADYSQIELRIMAHLSGDKGLIHAFANNMDVHRATAAEVFGVAPDLVSDDMRRAAKAINFGLIYGMSAFGLAKQLRIERVAAQEYVERYFARYPGVREFMERTRETARRQGYVETLFGRRLHTAEINAANMNRRQAAERAAINAPMQGTAADLIKRAMIVVDAWIPRSGLDIRMIMQVHDELVFEVAETAVDTARKHVRAAMSGVATLSVPLVVDIGVGGNWDEAH
>NZ_AP014879.1|WP_096361734.1|2825818_2826487_+|TIGR00730-family-Rossman-fold-protein
MSRESWKIFQIMAEFVAGYEQLAQIQPSVSIFGSARTSPGHPYYALTEEVARKLSDAGFSVVSGGGPGLMEAANKGAYAGKSPSVGLNIRLPHEQHANRYQNITLTFQHFFARKVMFVKYAKAYIGMPGGFGTLDELVEALTLIQTGKTTRMPVILVHAPFWSGLLDWFKGTLVREGVIDKDDMDLVTVVNTADEVLDVIFRYYEETGFEASEAEQEIKLNL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	1045349-1045372	3	0.875
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	NC_006362	Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence	92009-92032	3	0.875
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	1046348-1046371	3	0.875
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	97629-97652	3	0.875
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	NZ_CP023152	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence	43736-43759	3	0.875
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	NZ_CP044217	Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence	111049-111072	3	0.875
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	243706-243729	3	0.875
NZ_AP014879_1	1.2\|2409035\|24\|NZ_AP014879\|PILER-CR	2409035-2409058	24	NZ_CP039913	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence	22878-22901	3	0.875
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	356512-356535	4	0.833
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	63689-63712	4	0.833
NZ_AP014879_1	1.1\|2408993\|24\|NZ_AP014879\|PILER-CR	2408993-2409016	24	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	297401-297424	4	0.833

1. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 3, identity: 0.875

caatgccgagctgcgcggtgatca	CRISPR spacer
cgatgccgagcggcgcggtgatcc	Protospacer
*.********* ***********

2. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to NC_006362 (Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence) position: , mismatch: 3, identity: 0.875

caatgccgagctgcgcggtgatca	CRISPR spacer
caaggccgagcagcgcggtgatct	Protospacer
*** ******* ***********

3. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 3, identity: 0.875

caatgccgagctgcgcggtgatca	CRISPR spacer
cgatgccgagcggcgcggtgatcc	Protospacer
*.********* ***********

4. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 3, identity: 0.875

caatgccgagctgcgcggtgatca	CRISPR spacer
caatgccgacctgcgcggcgatcg	Protospacer
********* ********.****.

5. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 3, identity: 0.875

caatgccgagctgcgcggtgatca	CRISPR spacer
caatgccgacctgcgcggcgatcg	Protospacer
********* ********.****.

6. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to NZ_CP044217 (Mesorhizobium sp. NIBRBAC000500504 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

caatgccgagctgcgcggtgatca	CRISPR spacer
caatgccgagcggcgcggagatcg	Protospacer
*********** ****** ****.

7. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 3, identity: 0.875

caatgccgagctgcgcggtgatca	CRISPR spacer
caatgcagagcggcgcggtgatcg	Protospacer
****** **** ***********.

8. spacer 1.2|2409035|24|NZ_AP014879|PILER-CR matches to NZ_CP039913 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625b, complete sequence) position: , mismatch: 3, identity: 0.875

caaacgcgagttgcatcgtgacaa	CRISPR spacer
gatacgcgcgttgcatcgtgacaa	Protospacer
 * ***** ***************

9. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 4, identity: 0.833

caatgccgagctgcgcggtgatca	CRISPR spacer
tggtgccgagctgcgcggtgatct	Protospacer
...********************

10. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 4, identity: 0.833

caatgccgagctgcgcggtgatca	CRISPR spacer
tggtgccgagctgcgcggtgatct	Protospacer
...********************

11. spacer 1.1|2408993|24|NZ_AP014879|PILER-CR matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 4, identity: 0.833

caatgccgagctgcgcggtgatca	CRISPR spacer
ccggcccgagctgcgcggtgatca	Protospacer
* .  *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1140842 : 1149863

Staphylococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096360303.1\|1140842_1142186_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	4.7e-19	38.1
WP_096360304.1\|1142448_1143714_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.5e-99	52.7
WP_096360305.1\|1143768_1144323_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_096361858.1\|1144349_1145426_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.3e-45	36.3
WP_096360306.1\|1145428_1146085_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	1.7e-19	38.9
WP_148665001.1\|1146091_1146670_-	hypothetical protein	NA	NA	NA	NA
WP_096360308.1\|1146702_1147980_-	serine/threonine protein kinase	A0A1B1IUU3	uncultured_Mediterranean_phage	1.6e-24	31.8
WP_096360309.1\|1148217_1149390_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.8e-54	36.7
WP_096360310.1\|1149386_1149863_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-34	50.0

DBSCAN-SWA_2

1206870 : 1215517

Klosneuvirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096360353.1\|1206870_1207881_+	NAD-dependent epimerase	A0A1V0SKV4	Klosneuvirus	1.6e-24	28.7
WP_096360354.1\|1207923_1209327_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.1e-54	29.6
WP_096361869.1\|1209329_1210448_+	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	1.3e-139	67.6
WP_096360355.1\|1210450_1211398_+	GDP-L-fucose synthase	M1I463	Paramecium_bursaria_Chlorella_virus	3.4e-101	56.9
WP_096361870.1\|1211612_1213301_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-27	26.3
WP_096360356.1\|1213318_1214329_+	SDR family NAD(P)-dependent oxidoreductase	M4QPK0	Synechococcus_phage	4.9e-29	33.4
WP_172425943.1\|1214329_1215517_+	LegC family aminotransferase	A0A0F7LAY0	uncultured_marine_virus	1.2e-15	27.6

DBSCAN-SWA_3

1690128 : 1700278

Klebsiella_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096360762.1\|1690128_1691583_+	membrane-bound lytic murein transglycosylase MltF	A0A2K9VGW1	Klebsiella_phage	5.6e-10	31.5
WP_096360763.1\|1691679_1692147_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_096360764.1\|1692137_1693712_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.6e-18	29.3
WP_096360765.1\|1693836_1695294_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.1e-93	41.4
WP_096360766.1\|1695518_1695845_+	hypothetical protein	NA	NA	NA	NA
WP_096360767.1\|1695930_1697289_+	exodeoxyribonuclease VII large subunit	A0A160DF99	Gordonia_phage	1.4e-34	31.2
WP_096361909.1\|1697197_1698121_+	peptidoglycan DD-metalloendopeptidase family protein	A0A7K9	Microcystis_virus	5.9e-13	41.1
WP_096360768.1\|1698124_1700278_-	protein kinase	M1HZ83	Paramecium_bursaria_Chlorella_virus	6.8e-12	26.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP014879

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection