CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023422	Janthinobacterium svalbardensis strain PAMC 27463 chromosome, complete genome	3 crisprs	csa3,DEDDh,DinG,cas3,RT,WYL	0	1	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023422_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023422_1

2197941-2198108

Orphan

Consensus_repeat	Method
CGTACTACGAGAATGGCCAGCTG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP023422_1

>merge|NZ_CP023422|1|2197941-2198108|PILER-CR
TACTACGAGAATGGCCAGCTGCTGCGCGAAACCTACTTCAATGCCCAGGGTGAGGAGTTGCTCGGCGGCTGCGTGTACTTCGAGAATGGCCAGGTCAAGCAGAGAGTGACCGCCTTGCCGAACGGGCGCGACAGTATCTCGGAAACGTATCACGAGAATGGCCAGCTG

>NZ_CP023422|1|1|2197941-2198108|PILER-CR
TACTACGAGAATGGCCAGCTGCTGC	GCGAAACCTACTTCAATGCCCAGGGTGAGGAGTTGCTCGGCGGCTGCGTG
TACTTCGAGAATGGCCAGGTCAAGC	AGAGAGTGACCGCCTTGCCGAACGGGCGCGACAGTATCTCGGAAACGTATCA
CGAGAATGGCCAGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023422.1\|WP_096234554.1\|2202593_2203493_-\|transcriptional-activator-NhaR	unknown	unknown	gnl\|CDD\|176120
NZ_CP023422.1\|WP_096234542.1\|2191949_2192609_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023422.1\|WP_096234555.1\|2203650_2204613_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|274743
NZ_CP023422.1\|WP_096234559.1\|2206813_2207827_-\|zinc-binding-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176214
NZ_CP023422.1\|WP_096234540.1\|2190810_2191428_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP023422.1\|WP_096234539.1\|2189407_2190634_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP023422.1\|WP_157750969.1\|2198744_2199548_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225405
NZ_CP023422.1\|WP_096234556.1\|2204682_2205084_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377455
NZ_CP023422.1\|WP_096234541.1\|2191431_2191902_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP023422.1\|WP_167389635.1\|2192782_2193439_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP023422.1\|WP_157750967.1\|2194575_2194740_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367887
NZ_CP023422.1\|WP_096234553.1\|2201155_2202478_-\|chloride-channel-protein	unknown	unknown	gnl\|CDD\|238506
NZ_CP023422.1\|WP_096234551.1\|2199636_2200131_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP023422.1\|WP_096234557.1\|2205090_2205444_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016
NZ_CP023422.1\|WP_096234548.1\|2197122_2197530_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023422.1\|WP_096234547.1\|2195290_2197126_+\|lipid-A-export-permease/ATP-binding-protein-MsbA	unknown	unknown	gnl\|CDD\|131258
NZ_CP023422.1\|WP_096234544.1\|2193446_2194415_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293803
NZ_CP023422.1\|WP_096234552.1\|2200208_2201159_+\|toxin-antitoxin-system-YwqK-family-antitoxin	unknown	unknown	gnl\|CDD\|225405
NZ_CP023422.1\|WP_096234558.1\|2205533_2206811_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|225254
NZ_CP023422.1\|WP_157750968.1\|2194798_2195182_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP023422.1\|WP_096234554.1\|2202593_2203493_-\|transcriptional-activator-NhaR	gnl\|CDD\|176120	cd08429, PBP2_NhaR, The C-terminal substrate binding domain of LysR-type transcriptional activator of the nhaA gene, encoding Na+/H+ antiporter, contains the type 2 periplasmic binding fold. NhaR is a positive regulator of the LysR family and is known to be an activator of the nhaA gene encoding a Na(+)/H(+) antiporter. In Escherichia coli, NhaA is the vital antiporter that protects against high sodium stress, and it is essential for growth in high sodium levels, while NhaB becomes essential only if NhaA is not available. The nhaA gene of nhaAR operon is induced by monovalent cations. The nhaR of the operon activates nhaAR, as well as the osmC transcription which is induced at elevated osmolarity. OsmC is transcribed from the two overlapping promoters (osmCp1 and osmP2) and that NhaR is shown to activate only the expression of osmCp1. NhaR also activates the transcription of the pgaABCD operon which is required for production of the biofilm adhesion, poly-beta-1,6-N-acetyl-d-glucosamine (PGA) .Thus, it is suggested that NhaR has an extended role in promoting bacterial survival. This substrate-binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.5988e-107
NZ_CP023422.1\|WP_096234557.1\|2205090_2205444_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	1.79698e-32
NZ_CP023422.1\|WP_096234555.1\|2203650_2204613_+\|TerC-family-protein	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	1.55756e-146
NZ_CP023422.1\|WP_096234540.1\|2190810_2191428_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.16767e-11
NZ_CP023422.1\|WP_096234539.1\|2189407_2190634_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	9.26085e-73
NZ_CP023422.1\|WP_157750969.1\|2198744_2199548_+\|hypothetical-protein	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	6.56221e-23
NZ_CP023422.1\|WP_096234556.1\|2204682_2205084_+\|hypothetical-protein	gnl\|CDD\|377455	pfam05099, TerB, Tellurite resistance protein TerB. This family contains the TerB tellurite resistance proteins from a a number of bacteria.	0.00199364
NZ_CP023422.1\|WP_096234544.1\|2193446_2194415_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293803	cd07717, RNaseZ_ZiPD-like_MBL-fold, Ribonuclease Z, E. coli 3' tRNA-processing endonuclease ZiPD and related proteins; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Escherichia coli zinc phosphodiesterase (ZiPD, also known as ecoZ, tRNase Z, or RNase BN) is a 3' tRNA-processing endonuclease, encoded by the elaC gene. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme; this subgroup includes the short form (ELAC1). Only the short form exists in bacteria. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	7.7433e-88
NZ_CP023422.1\|WP_096234541.1\|2191431_2191902_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.19198e-12
NZ_CP023422.1\|WP_157750967.1\|2194575_2194740_+\|hypothetical-protein	gnl\|CDD\|367887	pfam04261, Dyp_perox, Dyp-type peroxidase family. This family of dye-decolourising peroxidases lack a typical heme-binding region.	5.06284e-07
NZ_CP023422.1\|WP_096234551.1\|2199636_2200131_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	2.4785e-16
NZ_CP023422.1\|WP_096234559.1\|2206813_2207827_-\|zinc-binding-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176214	cd08252, AL_MDR, Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP023422.1\|WP_096234547.1\|2195290_2197126_+\|lipid-A-export-permease/ATP-binding-protein-MsbA	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	0
NZ_CP023422.1\|WP_096234553.1\|2201155_2202478_-\|chloride-channel-protein	gnl\|CDD\|238506	cd01034, EriC_like, ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.	6.08789e-133
NZ_CP023422.1\|WP_096234552.1\|2200208_2201159_+\|toxin-antitoxin-system-YwqK-family-antitoxin	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	6.06191e-20
NZ_CP023422.1\|WP_096234558.1\|2205533_2206811_+\|glycerate-kinase	gnl\|CDD\|225254	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP023422.1\|WP_167389635.1\|2192782_2193439_+\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	2.63332e-32

>NZ_CP023422.1|WP_096234548.1|2197122_2197530_-|hypothetical-protein
MHLPAAPSDTQILGIIDAWIADLARGDYACAHARTAHDAYYGWTPALLRAVIEGYGSPEAYADGSVYRVTPAALASGAPHERCVERPDGQDGAEAIAEARHSLPLNGAWSDLTATFRVESAASGAKLVLQDIHVF
>NZ_CP023422.1|WP_096234547.1|2195290_2197126_+|lipid-A-export-permease/ATP-binding-protein-MsbA
MQQSRLLFFRLAGQFRRYGAIVAATLLAVGVASATDVLLIRQLQNVVDAMRTTASEQVAPVSGVMGMLQGWVDRFLPAQAGQVDLWVIPATILGLAVLRMVSSFAGDYGSVWLSSRVQADLREKMFATIMRLPSRFFDTTTTSLTQSRVAFDASQVSQAGLNVLNVMVRDSVATIGYLILLFSIDVKLALFCMASMPIVAIVVTLAGRRMRHLSKSSQQAVGELTSVLDESIAGQRVVKIFGGQDYEQARFVDVVKRNRQLAVKHAATSAMNSGFIMMLVGITLSSVIYFAMLRAQSGAITPGAFVAFMGALMAMQSPIKNLTKINEPLQRGLAAAESVFGLIDTPLEPDPGTVAPAAVQGNLSLQNVHFRYNSDDPDAPMALSDITLDIRAGETVALVGGSGGGKTTLLGLLPRFYDVSGGQILLDGVDLRDYALLALRRQFALVSQDVILFNDTMAANIAYGDPAPDMARIEASARAAYAHDFIMQLPQGYETQAGQNGSRLSGGQRQRLAIARALYKDAPILLLDEATSALDTESERQVQAALEVLMRNRTTIVIAHRLSTIESADRIVVMQGGRLVESGSHAALLQQGGAYARLHASQLSPVKNDVA
>NZ_CP023422.1|WP_157750968.1|2194798_2195182_+|hypothetical-protein
MRIRPATLLSALIFGSVVFSASASAVGLGFLADTPMAYLNKNDKPVFVKAVSDVLNDKKDGETVQWSNEGLRNSVRITAEITASDTQKTDAQTCRKVQVGLSAKGQEQTLKLKVCKAGTAAWKVAKS
>NZ_CP023422.1|WP_157750967.1|2194575_2194740_+|hypothetical-protein
MSMGMLRQMYGVGYDGVSKTDRLLDFSTPLSSAIYFVPSIDALLAVGISPADPG
>NZ_CP023422.1|WP_096234544.1|2193446_2194415_-|MBL-fold-metallo-hydrolase
MFKLTFLGTSSGVPTRHRNVTSLALQTTHNRDWWMIDCGEATQHRLQRLPLSVHDLVGICITHVHGDHSYGLPGLLASASMTGRKKPLLLIAPAAIKAWIDATLLHTELFLTYPLIHIDVDSAPVVHEEAGLTISRHALSHRAPSVGYRFALETSRWKLDKAALQAAGAPPGPAWGLLQAGQDAILDDGTLLRAATFRQTETQRATVVIGGDNDTPALLTDACAGAQLLVHEATYTEAMLQKVGPGPTHSSVQRVAQFAEAVRLPNLILTHFSARYHNADGMAELEAEARLHYSGELFLARDFDSYELDAAGVLSKLPGKSH
>NZ_CP023422.1|WP_167389635.1|2192782_2193439_+|sel1-repeat-family-protein
MSVSTASFNEAGILAYNDGNYAEAFKQFDAAARTGDPAGQHLLASLYYQGHGVTQDVPKAVELFTAAAQAGFPPSLANLALMYASGDGVVQDMAQSLAYGRQAAEAGDGQSQFNLAQAYRKGVDVPQDFAEAAFWYKQAAEAGSLSAQNEYGLLYAQGQGVELDYVQAYAWIAMPAEAGSAQSIKNRDQLLEILTPSQQQAARALAAEYAAQYGVNPH
>NZ_CP023422.1|WP_096234542.1|2191949_2192609_-|hypothetical-protein
MKLIVFLLSLLSTSAYGATLHLDKAATGKVRQAADIRYVNHDEKQTYQLKIGKQWVAGSCSSSGTGNLHALLLDMNFDGHADLWVTGYTDSQGRVRCSDVWLWDAPAKQYSFNKPLSAIPNLDISIADQAITGGIANCGCAAQCFYEDSYAWQAGKLMTIARREQDCERYREYRLNDKQDLIIVKDEIIDSGNPGQQAIENTKAYDWQRHARSMRKPWE
>NZ_CP023422.1|WP_096234541.1|2191431_2191902_-|GNAT-family-N-acetyltransferase
MTTHPASITFHAAKAEDTPAFIALRGKTRQNAISRERLAEVGITAESWADMMRSGSLPGQVCHHDGQLVGYCFGERDTGEIIVLALLPEFEGLGIGKTLLEQIMGQLRAQGHQRLFLGCSSDPASRSYGFYRYLGWTATGESDKYGDDVLEFRWSA
>NZ_CP023422.1|WP_096234540.1|2190810_2191428_+|TetR/AcrR-family-transcriptional-regulator
MAQMGRPRTFDRQAAVEQAMFLFWQQGYESTSLSQLKASLGGGISAPSFYAAFGSKEALFREAAQCYLDTFARVTACLWDDGLAPRAAIEQALRQSARMQSDPGHPPGCMVALGCMSAPTAEHAAVAAPLTASRARTRAGFVHCVERGMASGELSAQTDGVALAAVFDSFLSGVAIQARDGVGYAVFDPAITQILRVWDANRVPD
>NZ_CP023422.1|WP_096234539.1|2189407_2190634_-|MFS-transporter
MNHATLTTGTSPALADRLPVAGLLALAMTGFICIVTETLPAGLLPQISAGLGISAALAGQMVTAYALGSLLAAIPLTIATRGWRRRNVLLLTIIGFLVFNTVTALSTHYWLTLVARFFAGMAAGLAWSLLAGYARRMVAPQQQGRALALAMVGAPIALSLGVPLGTLLGSLVGWRAAFWIISALTLVLIAWVLAKVPDYPGQSVHERLPLRRVFTTPGVRPVLAVVITWMLAHNILYTYIAPFVAPAGLTGRIDLVLLVFGAAAMAGIWITGKLVERHLRASVLASLAVFAATALVLGIASHLPAVVYLGMAVWGLSFGGAATLLQTALADTAGSGADVALSMNVVAWNGAIAAAGVAGGALLETWGAGAFPWAMVALLVLAFVIAWSASAHGFRPGRRSGSAPVAGH
>NZ_CP023422.1|WP_157750969.1|2198744_2199548_+|hypothetical-protein
MPYRQTMRLALLAALIALPLAAQGDTSFYDNGQLKQKVTLLPNGHDRIVETYHENGQLMNRIRYHGRQMADGEYVSYGPNGKMSSHAFLKGGKMHGLQEVFYADGKLFQRSHFIHDKQDGESLTLAEDGKVLARKVWVDGEADGWSFESHDNGQLAQKALYRKGKLLSMQKWGSNGKPSIAWQQDALGREQGDVTEWYDNGVRAKVIPMRDGQRHGLLQVWASDGSLLQLVPYEHGKKQGIERRWDQRGKQVWEKAWQAGAPVPAGL
>NZ_CP023422.1|WP_096234551.1|2199636_2200131_+|winged-helix-turn-helix-transcriptional-regulator
MVVEAEVSAVARAQGMALQNMRVVMRAAQRHSAQIEKQCGVSGAQLWVMQELLERPGLRMGELASKMSIHQTTASNLVDALVKKTYVRKARDQPDQRVVTLTLTAEGQAVIAGAPQPARGLLPSALAQLDPDSLAHLNQGLNALLAVVAPDDRQAGMQPFPFTM
>NZ_CP023422.1|WP_096234552.1|2200208_2201159_+|toxin-antitoxin-system-YwqK-family-antitoxin
MKIINSVLLAAVLASSSSLATPALPAEALPATLYVDAEYQPAAPAAAMYEQRAPLRHDAARQAWHWQLYFAQPPGKLHMDAWLLDADVASPRYAYQRSVYFADGRPALLEERNGDGDFDGVNVAYHADGTVKSRKAYRAGEYEGVHSHYHANGQLSHALLYHAGQPADGEYLSFDEHGQISNRAHFADGVLSGEAQAFHPNGRLAERGPYLEGQRNGLHQSWWPDGHEKSRLNFLHGKPQGWSLLYFANGQLDQKNLFEDGVMLSTQSWRDDGTPLHAVEYVDGRKHGLERRWGEDGTRTVCAWQDGSLLRPCSHF
>NZ_CP023422.1|WP_096234553.1|2201155_2202478_-|chloride-channel-protein
MKHLHDIPSAFKHEFANPRLWWSRAVVVGMAAIAGLVVVGFTWLAEEALDLFLFFNGKAWWFALLWTPACAALLVWLTRRYAMGAAGSGIPQVMATLDPAVAPEQRSLFVSLKLSAAKIVLTAGGLLGGLSLGREGPSVQIAAGVMLAARRLLPRHSQVSAHSLLVAGGAAGIAAAFNTPLAGVMFAIEELSRSPEQRNSGLIVAGIVLAGMMAVSIHGNATHFGIIHPGPIGLALALPGLLVTLVAGVAGGLFARLLLASARGNPLGKLSAWRKGRPVLFAAVCGVLVAAIGIASHGATFGSGTVATRAMLEGSSDASPAFVAFKYVATWLTVWSGVPAGIFAPSLAIGAGIGHDIAVLLHYPHAPALIALGMVGFLAAATQAPLTAFIIVMEMVDGHGMVLSLMACAVVASTVSRVLSEPLYGALAQLQLQRLPAPPN
>NZ_CP023422.1|WP_096234554.1|2202593_2203493_-|transcriptional-activator-NhaR
MSTLNFKHLRYFWMVAKTGSIARAAEQLHLTPQSISGQLSEFADTLGVELFRRSGRQLELTDTGRRILSHAENIFNTGDELLEIVRDQSRTATTTFRVGCADSVSKLIACRLVAPALGLAEPLRIICREGRLASLLADLAVHRLDLIMADRPMPAHLSVRGFNHLLGESGMTLFGTPALATTLNGGFPECLDGAPLLLPGEDFAIYGRLLQWLGDNHLHPRIVGEFDDSAMMKAFGQSGAGLFFAPTVIAPQVCEQYAVVALGRVDSLVEQVYAITTERRLSHPATIAISQSARHELFV
>NZ_CP023422.1|WP_096234555.1|2203650_2204613_+|TerC-family-protein
MNGLESIATAPMWAGFIAFVLVMLALDLFVFGGNKAHKVSVKEAATWSLVWVSLALLFNGGLWWYLNGTAGPEIANQKALEFFSGYLIEKALSVDNVFVFLLIFSAFQVPIQYQRRVLIYGVLGAIVMRAVMIMAGAWVVSEFSWVLYLFGAFLLITGMRMLVAADAEPDVANNPVLRFARRHLRVADGEHGERFFVAKGGLRYVTPLFLVLILIEVTDLVFAVDSIPAIFAITTDPFIVFTSNLFAIMGLRALYFLLVDVADRFHMLKYGLAMVLVFIGAKMLIMPWYHVPVEASLLVVAVLIVSSCVASVFITRSDKK
>NZ_CP023422.1|WP_096234556.1|2204682_2205084_+|hypothetical-protein
MRTYEANSPQAAGRILALMMVVDGNLASAELQAMHRSKILEHIDLAPAAFQQLLQDLCDDMLTSTVHGAVQLANGVIDSLLDEIDDPDLRRKLLQAMWKIADADDWLADGEAVLLARASAVWSAETNFRAHGA
>NZ_CP023422.1|WP_096234557.1|2205090_2205444_-|YnfA-family-protein
MNDAIEWTSLARTFGLFTVTAVAELLGCYLPMLWLSNKGSAWLLLPAAISLLIFVWLLTLHPAASGRVYATYGAIYIATALGWLWLVDGITPAWTDITGVALALAGAAVIAMGHKTA
>NZ_CP023422.1|WP_096234558.1|2205533_2206811_+|glycerate-kinase
MTTTPAPRALLQAMFQAAIEAAQPSHCIPPHLPPAPKGRLIVIGAGKASAAMAQAVERHWPGPLSGLVVTRYGYAVPCERIEIVEASHPVPDQAGMQAAQRMLDLVANLQADDTVLCLISGGGSSLLALPLDGITLEDKQALNRALLASGASIGEMNCVRRHLSAIKGGRLAAACHPAQVITLAISDVPGDKLGDIASGPTVGDATTCEDALAIVRRYGMDLPNSLRAVLESGRGESVKPDDPRLARTQTTLIATPQMALEAAAGVARAAGVTPYILGDSLEGEARDVGKVMAGMALHAAKRGQPFAAFSAPCVLLSGGETTVTVRGNGRGGRNVEFLLALGIALEGHEGIHALAGDTDGVDGQEDIAGAVLAPDTLQRAWDLAIRPRDSLDNNDGHGFFQALGDSVITGPTLTNVNDFRAILIT
>NZ_CP023422.1|WP_096234559.1|2206813_2207827_-|zinc-binding-alcohol-dehydrogenase-family-protein
MKAIAYHHSLPITDAAALLEIELPTPVATGRDLLVAVKAISVNPVDAKVRKNRAPKEGQPEVLGWDAAGVVTAVGPDVTLFQVGDKVWYAGAINRPGSNSEFQLVDERIVGHMPASLDFAPAAALPLTAITAWELLFERLQISRDKSLTGKSLLVIGAAGGVGSVLVQLARQLTGVTIIGTASRAETANWVRELGAHHVIDHSLPLAGEITRLGLPPVDYVISLNQTDTHFEQIVELIAPQGKFALIDDPEHIDVRKFKGKSVSLHWELMFTRSLFQTADMVRQHELLEELAQLVDAGTIKTTLAERFGTINAANLKRAHALLESNTAKGKIVLEGF

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Crispr_ID: NZ_CP023422_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023422_2

2395227-2395411

Orphan

Consensus_repeat	Method
AACAGCTATGCCACCGGCAATGTGAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP023422_2

>merge|NZ_CP023422|2|2395227-2395411|CRISPRCasFinder
AACAGCTATGCGACGGGCAATGTCACGGGAGCTTCCGGCCTGGGTGGCTTGCTGGGCCGGATAGAAAGCGGCGCGGTAACGAACAGCTATGCCACCGGCAATGTGACCGGGACGAATAATCTCGGCGGCCTGGTCGGGGTGTCTGCTGGCCCGATAAGCAACAGCTATGCCACCGGCAATGTGAC

>NZ_CP023422|2|1|2395227-2395411|CRISPRCasFinder
AACAGCTATGCGACGGGCAATGTCAC	GGGAGCTTCCGGCCTGGGTGGCTTGCTGGGCCGGATAGAAAGCGGCGCGGTAACG
AACAGCTATGCCACCGGCAATGTGAC	CGGGACGAATAATCTCGGCGGCCTGGTCGGGGTGTCTGCTGGCCCGATAAGC
AACAGCTATGCCACCGGCAATGTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023422.1\|WP_096238390.1\|2382727_2384167_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NZ_CP023422.1\|WP_071078291.1\|2411060_2411879_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP023422.1\|WP_096234679.1\|2385436_2386252_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226905
NZ_CP023422.1\|WP_096234690.1\|2408665_2409976_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP023422.1\|WP_096234684.1\|2391334_2393008_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP023422.1\|WP_096234677.1\|2382273_2382702_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|378915
NZ_CP023422.1\|WP_096234683.1\|2390060_2390669_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|227001
NZ_CP023422.1\|WP_096234688.1\|2404698_2407011_+\|chitinase	unknown	unknown	gnl\|CDD\|225862
NZ_CP023422.1\|WP_096234691.1\|2410189_2411050_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP023422.1\|WP_096238391.1\|2412960_2414427_+\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP023422.1\|WP_096234693.1\|2414441_2415359_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380381
NZ_CP023422.1\|WP_096234686.1\|2402034_2402877_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_CP023422.1\|WP_096234681.1\|2387403_2388837_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP023422.1\|WP_096234682.1\|2388829_2390050_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239032
NZ_CP023422.1\|WP_096238389.1\|2380272_2382027_+\|sulfoacetaldehyde-acetyltransferase	unknown	unknown	gnl\|CDD\|236042
NZ_CP023422.1\|WP_096234692.1\|2411902_2412952_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236947
NZ_CP023422.1\|WP_096234687.1\|2403206_2404595_+\|chitinase	unknown	unknown	gnl\|CDD\|381595
NZ_CP023422.1\|WP_096234689.1\|2407086_2408355_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|367007
NZ_CP023422.1\|WP_096234678.1\|2384342_2385356_+\|taurine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226904
NZ_CP023422.1\|WP_096234680.1\|2386244_2387126_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182276

Protein	Function_ID	Function_description	E-value
NZ_CP023422.1\|WP_096238390.1\|2382727_2384167_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	6.49838e-52
NZ_CP023422.1\|WP_071078291.1\|2411060_2411879_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	5.19976e-62
NZ_CP023422.1\|WP_096234679.1\|2385436_2386252_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226905	COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism].	2.76376e-132
NZ_CP023422.1\|WP_096234690.1\|2408665_2409976_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.63652e-72
NZ_CP023422.1\|WP_096234684.1\|2391334_2393008_+\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	3.97241e-86
NZ_CP023422.1\|WP_096234677.1\|2382273_2382702_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.09663e-19
NZ_CP023422.1\|WP_096234683.1\|2390060_2390669_+\|c-type-cytochrome	gnl\|CDD\|227001	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion].	4.21793e-14
NZ_CP023422.1\|WP_096234688.1\|2404698_2407011_+\|chitinase	gnl\|CDD\|225862	COG3325, ChiA, Chitinase [Carbohydrate transport and metabolism].	7.55213e-115
NZ_CP023422.1\|WP_096234691.1\|2410189_2411050_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.66166e-60
NZ_CP023422.1\|WP_096238391.1\|2412960_2414427_+\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	0
NZ_CP023422.1\|WP_096234693.1\|2414441_2415359_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|380381	cd06976, cupin_MtlR-like_N, AraC/XylS family transcriptional regulators similar to MtlR, N-terminal cupin domain. MtlR is a Pseudomonas fluorescens protein that acts as a transcriptional regulator of the mannitol utilization genes. It has an N-terminal cupin domain (represented by this alignment) and a C-terminal AraC/XylS family helix-turn-helix (HTH) DNA-binding domain. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	2.63793e-36
NZ_CP023422.1\|WP_096234686.1\|2402034_2402877_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	2.26822e-15
NZ_CP023422.1\|WP_096234681.1\|2387403_2388837_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	7.74022e-150
NZ_CP023422.1\|WP_096234682.1\|2388829_2390050_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239032	cd02114, bact_SorA_Moco, sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.	0
NZ_CP023422.1\|WP_096238389.1\|2380272_2382027_+\|sulfoacetaldehyde-acetyltransferase	gnl\|CDD\|236042	PRK07525, PRK07525, sulfoacetaldehyde acetyltransferase; Validated.	0
NZ_CP023422.1\|WP_096234692.1\|2411902_2412952_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	3.59654e-171
NZ_CP023422.1\|WP_096234687.1\|2403206_2404595_+\|chitinase	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	1.6205e-59
NZ_CP023422.1\|WP_096234689.1\|2407086_2408355_-\|carbohydrate-porin	gnl\|CDD\|367007	pfam02264, LamB, LamB porin. Maltoporin (LamB protein) forms a trimeric structure which facilitates the diffusion of maltodextrins across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an antiparallel beta-barrel.	3.65071e-112
NZ_CP023422.1\|WP_096234678.1\|2384342_2385356_+\|taurine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226904	COG4521, TauA, ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism].	6.42364e-125
NZ_CP023422.1\|WP_096234680.1\|2386244_2387126_+\|ABC-transporter-permease-subunit	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	7.30161e-97

>NZ_CP023422.1|WP_096234684.1|2391334_2393008_+|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MTLNTKLLPLTLLVLIQSAWAVDPPSAGSQLQQIPVAPQLPKAPPAIRVQQGNVPAATLGDTTRITVQRLQVTSPPVFAESELVAATGFVPGSELTLGELRAMASKIASYYQQRGYFLAQAYLPAQDIQDGVVQITVLPGQYGQVQLRNQSNLSDGLAGTILAGLDGQVISTPPLERRLLLLSDLPGVQVSSTLAPGASLGASDLIVEVQPGSRFNGSIDVDNQGNRYTGRNRIGATLNINELAGIGDVASVRAFTSADGLNYGRLAYQGQAGLLRLGGAYTYMDYKLGKEFAVLDAKGTAKIASAYGSYPLIRSRSSNLYAQVSYDDKTFQDRTESTDTVNDKTARVWMLNLNGDAKDGWGGGGISNYSLTYTTGKIDIETPLARRIDQLTVKSNGHFNKLAFNAARVQSLGGETSLFGTLSGQAASKNLDVSEKMGIGGVGGVRAYPGGEAYGDQGYVLNLELRQNLTAFTAFAALPGQLQVLAFADTGSVKLNRDAWSAGENRRTLSGAGVGVTWTGANALVLKAYYAHKLGNAKATSAPDAAGRFWLQAVKYF
>NZ_CP023422.1|WP_096234683.1|2390060_2390669_+|c-type-cytochrome
MKILFAALALSAAGSACALEIHLPPETATYKASELPGYQLVQRNCMTCHAAQYASSQPPASPRAYWEATVKKMKKPFGAQFDDADMPAMVDYLVKTYGAERGAAAPAAAVARPAAVPAASGKDVKTLLAANGCMACHALDQKVVGPGFTEVAARYKGKDGVAAVAANIRSGGAGKWGPVPMPPFSQLSVADAATLAKYVLSR
>NZ_CP023422.1|WP_096234682.1|2388829_2390050_+|molybdopterin-dependent-oxidoreductase
MSDTTLLPASRRRFLRTTAALGAAAVAGPALAESVTLPFENGERELVAFPQKRPLILLTSRPPQLETPFSVFNEGAITPNDAFFVRYHWSGLPTSIDGDSYRLRIKGLIKEPLELSLAELKKLAEPVDVVAVTQCSGNSRGFFAPRANGGQLGNGAMGNARWTGIPLKTVLEKAGISASAVQVAFNGLETPPVGDGPDFQKALSVEHIMAGDVLLAWAMNGEDIPFLNGYPLRLIVPGYYGTYWVKHLSDISVLDKPFDGFWMSTGYRIPDNGSGFIEPGTPVGKTTPISRLNVRSFITSVQDGAQVKAGRDLALRGIAFDGGQGISEVAISADGGHSWQEAKLGKDLGRFSFREWSMILKAPRKGKHVLMVRAVNRIGQSQPMKALWNPMGYMRNVVETTRIDAV
>NZ_CP023422.1|WP_096234681.1|2387403_2388837_+|amino-acid-permease
MISDNHNNTGLQHSLKQRHMSMIAIGGVIGAGLFVGSGVIAKAAGPAAILSFLLTGGLVVLIMRMLGELASSLPVVGSFYEYARLAFDDKPKVSKFLGFMSGWMYWYFWVVVVALEAIAGAKLVNFWLPEVPSWAISLVLLVSMTVLNLFSVKAFGEFEFWFASIKVVAIVVFLFVGALFITGSLPNSIPSLGFLTSNGGFMPHGWGPVLSGAVAATAFYSGAEIVTIAAAETSDPAKAIARATNSVITRVLMFYVGSMFVVVCIVPWDSPAIATPFVSALKVMNIPYAAHIMNAIILTAVLSALNSSLYASSRMIFALTRRGDAPTGLVKLSKNGVPIRAILFSTLFAYFAIAVSYVSADLVFPFIVNSYGILILFVYLLIAISQLRLRRRLERECPERIKVRMWLFPYLTYFTIIAMLVILGAMSVSSDTEQRVSFWFGLLSVVIMSVMYYIKKLVNDDRNGGEAADTKVELKHV
>NZ_CP023422.1|WP_096234680.1|2386244_2387126_+|ABC-transporter-permease-subunit
MHSPSVVGFPPATAKRAGFFARLFAPRCAMPGEAFGAPGQGNSSRIASVTVIVVLLLWFGVTASGMVKPLFLPSPQAVYEKFIMAATTGFGGATLWEHTVASLVRVFGAFGLACVLAIPIGVMMGVNRVARGIFDPLIEFYRPLPPLAYLPLVIIWFGIGEFSKVYLIFLAIFAPMAIAARAGVSSVSLEQIHAAYSMGATRFQVIVHVILRAAIPEILTGMRIGIGVGWTTLVAGEMVAATRGLGYMVLSASEFLASDVVIMGIIVIGFFAFLFDLMMRYLERTLVPWKGKV
>NZ_CP023422.1|WP_096234679.1|2385436_2386252_+|ATP-binding-cassette-domain-containing-protein
MENLYVKDVSVIYPGKTAGERVHALNNINLTINSGDFVVALGASGCGKTTLLSLMAGFIAPSKGEIMLGENKVEGPGADRGVVFQKHALLPWLNVMENVEFGLKLQGVAKAVRREQAAKNLALVGLKDFHDNMIYQLSGGMQQRVGIARALTSNPAMLLMDEPMAALDALTRETIQELLLDIWAKSSTMFFFITHSVDEALFLANRLIVMSPRPGRITHTYELDFNKRFLECRDARAVKSSPDFIKMRETVLNIIYGDERAVNKELEVSHA
>NZ_CP023422.1|WP_096234678.1|2384342_2385356_+|taurine-ABC-transporter-substrate-binding-protein
MRRAVLGTLVLGVALASSGTVFAQAKEVTIAYQEINGPFLVAIASGEVEKTTGYKINWRKFDSGAKVATGMASGDVQIGVIGSSPLTAAVSRGVDLQLFWIIDDINEAEAMVARNGAGISKPTDLRGKKIAVPFVSTTHFHTMFALETWGIKPTEVKLLNMQPNQIAAAWERGDIDAAFVWDPALSKLKQNGKVLVTSGELSKKGKATFDGMAVERAWGEANADFMAKFVKVMAAFDADYRANPKAWTIDSPQVKANVKHSGAAAKDVAASVALYAYPSLQEQASPAWLGGGAKGGVAQALLATAQFLKTEGKIDTLASDYAKYVTPKYAQAAGLLK
>NZ_CP023422.1|WP_096238390.1|2382727_2384167_+|FAD-binding-oxidoreductase
MNKPVDTPSDVLGNGTAARTPYDPAFDPLVAQRPGHGNAYAPTYWIGTAGEPPADDGPITHDIDVDVAIIGSGFTGLSCAIFLAQEHGIKATVLEANRVSWGCSTRNGGQAQCTTGRLKRSQWIARYGLDTALKLHTEVCDAMQTFKKITADIDCEPQPGGHLYIAHKAKAMPALEKEAKLMREVFKYDARILDADTVKREFVDDKEAAGALHEPEGIGIHAGKLAFGYLRKARALGAKVHPSSPVMGWETRNGVHYLQTPGGVVRARAVAVATGGYTSPHLHPQVKNRLLPILSNSLVTRPLTPAEIEACNFRTHQVITDTRILRHYYRLMPDNRVQIGSRSAITGADAPDDKYKQFLINDLHRKFPALTGIPIDYSWWGWVDVSHDMMPRIVQPDPKQSIFYSLGYGGNGVMYSAQAGRRMAERIAGKASDTGLPIFNSKLPYPNMMELVESQAFAPFRRLGQRFLYRWYHLKDEVF
>NZ_CP023422.1|WP_096234677.1|2382273_2382702_+|nuclear-transport-factor-2-family-protein
MNHPVPHTDAVTTAVTTDFLQAFGDAWNRHDIDALMAAMADDCEFHAVAGPDLLGKSFIGRDAVRAGFELAWQTFPDAAWLNPEHFVSGERGVTESTFAGTKADGTRIEARMVDIFTFRDGKIAVKNAFRKDRPPVATGNKA
>NZ_CP023422.1|WP_096238389.1|2380272_2382027_+|sulfoacetaldehyde-acetyltransferase
MTPSEAFVETLAANGVTDMFGIMGSAFMDPMDIFAPAGIRLIPVVHEQGAGHMADGYARVSGRHGVVIGQNGPGISNCVTAIAAAYWAHTPVVIITPETGTMSMGLGGFQEANQLPMFEEFTKYQGHVTHPARMAEYTGRCFDRAMSEMGPTQLNIPRDYFYGEIKAEIPKPNRLDRGAGGEHSLNEAAELLAKAKFPVIISGGGVVMGDAIEECKALAERLGAPVVNSYLHNDSFPASHPLWCGPLGYQGSKAAMKLIAQADVVVALGSRLGPFGTLPQHGMDYWPKNAKIIQIDADNKMLGLVKKISVGICGDAKAAAKAILSRLDGKTLDCDATREERYATVQAEKAAWENELDNWTHEKDAYSLDMIEEQKKEPGNYLHPRQVLRELEKAMPEDVMVSTDIGNINSVANSYLRFEKPRSFFAAMSFGNCGYAFPTIIGAKVAAPHRPAVSYAGDGAWGMSLMETMTCVRHNIPVTAVVFHNRQWGAEKKNQVDFYNRRFVAGELDNQSFAEIARAMGAEGITVDKLEDVGPALKKAIDMQMNEGKTTIIEIMCTRELGDPFRRDALSKPVRHLDKYKDYV
>NZ_CP023422.1|WP_096234686.1|2402034_2402877_+|sulfotransferase
MTSHFIGVAGLPRAGSTLLCQLLAQHPDLHCEGNSSPLCNALLGMRRMVSDDSFFLSQLDSTFDASYGHLKTAMQGFLRGWYQDCGKQGVVDKNRAWLHCVEMLLQLAPEAKIIVCVRELGQVYGSIETQHQRTILLDFVDHLADFDRLGRADMLFAKDRTIGAPLSSLHAVLDLPVEVQKKLYFVRFEDLMARPVECMSHLYAWLGLAPWQIDPHNLAVGIQESDSHYRMKYTHRQQATISVPKLHAIPPRIQAQIESAYDWFYELYYPQHQRAATPSA
>NZ_CP023422.1|WP_096234687.1|2403206_2404595_+|chitinase
MAGLLGSALLACGGNSTTEPPPTLLAATTASDSCVAWSASAVYTAGQCTVYDGKVYRAKWWVQGTAPGNDQWGPWSLDSTTPTPTPTPTPTPTPTPTPGVPTKAQAEANEAALTNNDFFRKVKASIRTLGNTAVEAVQPGLAGNPLNVKRVERLLPAAKWEYYFAARDASYTYQRFLQAVAKFPAVCDDYGDGRNADAICRHSLATMFAHFGQETGDHNASSPLPQWRQGLKYLRELGCDETGAGCGYNIECADPVFNKVWTCGKNADGSFKKYFGRGAKQLSYNYNYGPFSQAMHDGDQTVLLKNPDLVASTWLNLASATFFFVYPQPPKPSMLHVLDGTWVPNAADTTAGAGNNFATTIMIINAECGQGTEKQAAQNRIDYYKQFATDMGWDYSGEQLSCANMQRFTPASSASYNIYWEKNWSAGGENQCQLVSYQTPYSALLAGNYVKCVEANWNVKLQ
>NZ_CP023422.1|WP_096234688.1|2404698_2407011_+|chitinase
MKSNALLMALLSGVLVACGGGQEGTTATPNTLLATVEACAVWDAATVYTGGQCVLYQGVSYKAKWWTQGNVPSATDQWGPWAVTDTPTPTPTPTPTPTPTPTPTPTPTPTPTPTACRPDGLISAVPNVPYCKVYDVNGREVLGNGLNRRIVGYFASWRTGVDGSPTYLVNNLPWDKITHLNYAFASVDPATSKIAIGSGAANPDTGLTWPNVPAAAMDPSLPYQGHFNLLAQYKKKYPGVKLMISVGGWAGSGGFYTATTNADGSVNTAGINTLADSMVAFVRQYNFFDGVDVDYEHPTTNNEAGNPNDFAVSKPRLAGLMTSYNVLLKVLRQKLDEAAVQDNKYYLLTIAGSASGWVLRGEENMSGLKYLDYASLMSYDLHGAWNQYVGPNAALFDDGNDGELRAGNAYQYQNIGYLNTDWAYRYYRGAMQAGRINIGVPFYTRGWKDVTGGTNGLWGTTALTNSTITCAGVKTCGMGATGIDNVWYDLDSQGKPTPGGGNPIWHALNLQNGIVPSYLDAYKVTDKALVGTYVPYYSSTMVAPWLWNATKKVFISTETTQSIAAKAQYIVNNNIGGVMIWEMAGDYAWDATRNGGKGEYFMGTTLTDVLYQAFRTAGVYGNKRAEIAMPATAANVSITLGGWKLGDNNFPINPVMTVKNNTTSTLPGGTVVEFDYPVSAPSDMSDQSGFGLTVINAGYTGPNNIGGFTKNYNRARFAIPAWQSLAPGGSVALTLNYRLPISGPANYTVTVGGTKYALTQEYPELPVALP
>NZ_CP023422.1|WP_096234689.1|2407086_2408355_-|carbohydrate-porin
MNRTALKTLPALILAIASASAIADPMYPSDAEGFHGYLRAGAGSNTSGDGGSQGCFGLGGNTMKYRLGNECDAYTEFGYTKSVAKSGGVNYLATIWVNAYAPNSDFGDNKLGIVKAYVEAQGLDFLNGGTAWIGKRFYYRPDIHMLDLQYINMNGTGAGLDRIPAGPGKFSYAFFKDNDIKIALPNGGVNTKSAVRQNFIFGEIPVNENGTLDLAATYIIGEGKDDVLTGKRNNGWQLSAFHRQGKVFGGGNTFGVQYGVGPGTGNGAQFGASGDTNFGSDVKRMRIFNDMAIQPMANFGMEFVALWQKDESNAKGSSTWTSVGVRPVYAFTDNFKLVGELGTDRVTQAGGQPAKRLTKLTIAPTISAGPGLWSRPELRAFVTYGKWNDAATASVNASNNGGPIYNNNTSGTSYGFQVETWF
>NZ_CP023422.1|WP_096234690.1|2408665_2409976_+|sugar-ABC-transporter-substrate-binding-protein
MKRSAIAALCAGAFCFASSAIAATDLVIATVNNGHMIEMQKLSKFFEQANPDIKLKWVTLEEGVLRQRMTTDIATKGGQFDVMTIGLYETPIWGKKNWLIPIKPDAKYDIDDLLPAIREGLSGDGKLYASPFYGESSMIMYRSDLVKKAGVTIEDRPTWNQLRDVAAKLHDPANGVYGICLRGKPGWGDNMALITTMANSYGGQLFDMQWKPQFTSKPWKDAVTMYVDLMKKYGPPGAAANSFNENLALFNQGKCGIWIDATIAASFITDPKQSKVADKVAFAQSPIGVTERGANWLWIWSLAIPASSKHPNEAQRFINWATSPDYVKLVARETSWANVPTGTRKSTYASPEFQKVAKFAAAEGKALATTRAVQSTMLPSPYVGVQFASIPEFQVIGVAAGQQMAAALLGKVTVDQALELSQQTAEREMRKGGYYK
>NZ_CP023422.1|WP_096234691.1|2410189_2411050_+|sugar-ABC-transporter-permease
MKRIIPRTLLTPAVVAVSVISVVPLLITLFYSFVRYSMLDPSGHPFHGLANFHFFFTDASFLPALQNTFTLLFSVMLITVVLGTALGLLINEAFPGRAIVRVLLISPFLVMPAVNALMWKNMLLNPIYGLFAQISIFFGATPVDWLSAHPLFSIIMMVSWQWLPFACLIFMTALQSMDREQLEAARMDGATYLQQLRYLYIPHLGRAVSVVLMIEMIFLLSIFAEIFTTTGGGPGFDTTTITFMIYQQALLSYDVGAASAGALFAVLIANIAAFFLMRVIGKNLSK
>NZ_CP023422.1|WP_071078291.1|2411060_2411879_+|carbohydrate-ABC-transporter-permease
MHSKFNLYGRTAAAWLCALLLFFPIFWLGLMAFKTEGQAISTPPLLFFTPTLDSFREVLARDNYFGYAWNSLFTSVVSTAIGLLIAIPAAYSMAFFPTGGTIGLLKFMLSSRYMPGVGALMPIYICYQYFGLLDTRIGLTIMFMLMNLPIMIWLLYTSMKELPREILEASRMDGATVWDEFRHVVLPLSVGGIASTALVCMVWSWNESFWSLNLGASNAGTLAWLIASYSSPEGLFWAKLSAASLMAIAPIMALGWFCQKQLVQGMTFGAVK
>NZ_CP023422.1|WP_096234692.1|2411902_2412952_+|ABC-transporter-ATP-binding-protein
MAYLQLNNIEKFFGEHRAIKGIDLDIQQGEFVVFVGPSGCGKSTLLRLIAGLEPIDGGKLSLDGRDITNVPSSKRDLAMVFQSYALYPHMTVFQNMSFALKLAGVDPAIIREKVDKAAAILDLGRYLERTPKELSGGQRQRVAIGRAIVRDPKVFLFDEPLSNLDAALRVQTRIEIAKLHRELGATTIYVTHDQVEAMTLADRVVVLRDGQIEQHGSPLELYDHPANRFVAQFIGTPSMNVVPADAAPQLLAQAGSAAQADGFVGIRPEHVHLGAAQPGSVPVTVDLVESLGVETLTYVRLPNNVQVVSRGAERSSLQPGQQTHLTFEPGFVHYFDRAGKTYAAAKGAL
>NZ_CP023422.1|WP_096238391.1|2412960_2414427_+|mannitol-dehydrogenase-family-protein
MALNQANLAQLPANVAVPAYARETLVASIVHIGVGGFFRAHQAVYLDDLLALPGNEQWGYCGVGLLPTDAAMRDAMRAQDGLYAVVERSAAGDSARIIGSVGEYLYAPDEPQAVLEKLADPGTRIVALTITEGGYYVNQGTGEFDADHADIVHELAHPDAPRCSFGYLAAALALRHRRGLAPFTIMSCDNLQNNGDVTRKMLLAFVALRDGELARWLATHGSFPNSMVDRITPATTDEHRALLRDSFGIVDAWPVVCEPFRQWVIEDEFPQGRPAWEKVGAQMTRDVLPYEKMKLRLLNASHQALCYIGMQLGYTFAHEAMLDPGIRLLVRRMMDDEVTPLLDSVEGIDLERYKATLIERFSNPAVRDQLARIGTEGSARIPKFVLPSVREALARGSAIKLLAFTVACWFRYLEGHDEQGREMPLNDPYAARLRALALQGGSDAAPLLSLRELFGDLCDTPAFTQAVGEALASLYGLGARAALEQSVA
>NZ_CP023422.1|WP_096234693.1|2414441_2415359_+|AraC-family-transcriptional-regulator
MPRKADAVLPQMELEQQRDATPGFEPKGSFGFIRYLEHGFPNALVRWHYHDEYELHLIVETSGKVFVGDYIGQFAPGHLVLTGPRVPHNWVSLDTPPEGVALRDMVLQFSHAPLASMAAAIPELKGIFPLLQRALHGVEFFGVSEQSLRRFQRIRDSSGLPRFIEFLTLLGELAQISDYQLLSTVPMQSSDDDVALARISSAINFIVHNYSSQFSLKQLAEQVDMPERTFSRFFRSATGNSFTDFVNRLRINKACQLLMETERYVSNICYEAGFNNVANFNRRFLELKGMTPKEFRQQALGRFGA

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Crispr_ID: NZ_CP023422_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023422_3

3758531-3758610

Orphan

Consensus_repeat	Method
CACGCTGGCATTGGCGCCGACGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023422_3

>merge|NZ_CP023422|3|3758531-3758610|CRISPRCasFinder
CACGCTGGCATTGGCGCCGACGGTGGCGGCGCCGCCACTGAGCATATTGCCGCTCACGCTGGCATTGGCGCCGATGGTGG

>NZ_CP023422|3|2|3758531-3758610|CRISPRCasFinder
CACGCTGGCATTGGCGCCGACGGTGG	CGGCGCCGCCACTGAGCATATTGCCGCT
CACGCTGGCATTGGCGCCGATGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023422.1\|WP_096235623.1\|3760145_3760442_-\|pentapeptide-MXKDX-repeat-protein	unknown	unknown	unknown
NZ_CP023422.1\|WP_096235619.1\|3751186_3752281_+\|YeiH-family-putative-sulfate-export-transporter	unknown	unknown	gnl\|CDD\|225411
NZ_CP023422.1\|WP_096235628.1\|3763440_3764088_+\|DUF1109-domain-containing-protein	unknown	unknown	gnl\|CDD\|377671
NZ_CP023422.1\|WP_096235622.1\|3753881_3754643_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380379
NZ_CP023422.1\|WP_096235631.1\|3767235_3768357_+\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|379373
NZ_CP023422.1\|WP_096235630.1\|3765717_3765960_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023422.1\|WP_096238503.1\|3749588_3750161_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP023422.1\|WP_096235629.1\|3764207_3765704_+\|DUF4331-domain-containing-protein	unknown	unknown	gnl\|CDD\|379511
NZ_CP023422.1\|WP_096238504.1\|3754639_3755281_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215002
NZ_CP023422.1\|WP_096238505.1\|3755425_3756025_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023422.1\|WP_096235627.1\|3762854_3763454_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|237131
NZ_CP023422.1\|WP_096235621.1\|3753031_3753796_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP023422.1\|WP_167389765.1\|3749056_3749584_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP023422.1\|WP_096235618.1\|3750193_3751093_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182768
NZ_CP023422.1\|WP_096235616.1\|3747637_3749035_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP023422.1\|WP_096235626.1\|3761919_3762726_-\|DUF1223-domain-containing-protein	unknown	unknown	gnl\|CDD\|369071
NZ_CP023422.1\|WP_096235624.1\|3760532_3761309_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP023422.1\|WP_096235625.1\|3761314_3761920_-\|DUF4405-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP023422.1\|WP_096235620.1\|3752387_3753029_+\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|182514
NZ_CP023422.1\|WP_096238507.1\|3766024_3767239_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350

Protein	Function_ID	Function_description	E-value
NZ_CP023422.1\|WP_167389765.1\|3749056_3749584_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.06884e-12
NZ_CP023422.1\|WP_096235619.1\|3751186_3752281_+\|YeiH-family-putative-sulfate-export-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	7.84066e-105
NZ_CP023422.1\|WP_096235628.1\|3763440_3764088_+\|DUF1109-domain-containing-protein	gnl\|CDD\|377671	pfam06532, DUF1109, Protein of unknown function (DUF1109). This family consists of several hypothetical bacterial proteins of unknown function.	1.21384e-48
NZ_CP023422.1\|WP_096235622.1\|3753881_3754643_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|380379	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain. This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is Escherichia coli HTH-type transcriptional regulator NimR (also called YeaM) that negatively regulates expression of the nimT operon and its own expression. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.3612e-33
NZ_CP023422.1\|WP_096235631.1\|3767235_3768357_+\|HupE/UreJ-family-protein	gnl\|CDD\|379373	pfam13795, HupE_UreJ_2, HupE / UreJ protein. These proteins contain many conserved histidines that may be involved in nickel binding.	4.15808e-61
NZ_CP023422.1\|WP_096238503.1\|3749588_3750161_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.38571e-13
NZ_CP023422.1\|WP_096235629.1\|3764207_3765704_+\|DUF4331-domain-containing-protein	gnl\|CDD\|379511	pfam14224, DUF4331, Domain of unknown function (DUF4331). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 223 and 526 amino acids in length. There is a conserved FPY sequence motif.	2.35357e-179
NZ_CP023422.1\|WP_096238504.1\|3754639_3755281_-\|hypothetical-protein	gnl\|CDD\|215002	smart01059, CAT, Chloramphenicol acetyltransferase. Chloramphenicol acetyltransferase (CAT).catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT. evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see ). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen.	5.298e-38
NZ_CP023422.1\|WP_096235627.1\|3762854_3763454_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|237131	PRK12536, PRK12536, RNA polymerase sigma factor; Provisional.	7.106e-90
NZ_CP023422.1\|WP_096235621.1\|3753031_3753796_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.02894e-23
NZ_CP023422.1\|WP_096235625.1\|3761314_3761920_-\|DUF4405-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	7.12403e-52
NZ_CP023422.1\|WP_096235618.1\|3750193_3751093_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	7.87987e-104
NZ_CP023422.1\|WP_096235616.1\|3747637_3749035_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	6.50304e-110
NZ_CP023422.1\|WP_096235626.1\|3761919_3762726_-\|DUF1223-domain-containing-protein	gnl\|CDD\|369071	pfam06764, DUF1223, Protein of unknown function (DUF1223). This family consists of several hypothetical proteins of around 250 residues in length which are found in both plants and bacteria. The function of this family is unknown. Structurally it lies in the Thioredoxin-like superfamily.	2.61786e-54
NZ_CP023422.1\|WP_096235624.1\|3760532_3761309_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	5.86389e-93
NZ_CP023422.1\|WP_096235620.1\|3752387_3753029_+\|LysE-family-transporter	gnl\|CDD\|182514	PRK10520, rhtB, homoserine/homoserine lactone efflux protein; Provisional.	6.90139e-39
NZ_CP023422.1\|WP_096238507.1\|3766024_3767239_+\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	0.000679224

>NZ_CP023422.1|WP_096238505.1|3755425_3756025_-|hypothetical-protein
MRAVMLKRQKSRFELHEDGVVHESGGIRSYAAFADIEDLYLFAAGSTAMSGLINNFAYRTGADQPWILATAELKRFDEFMDEFRSRYVLHRMPVLKQKLADGERVNFHYISSGNVYKKRLLGNFLNFKTQVVALSAQGLHVDGVTFPGASLKCMNLSDWTEKVTIKDAAGATVFSCIGTGILSFDLFANMLDDEINQAA
>NZ_CP023422.1|WP_096238504.1|3754639_3755281_-|hypothetical-protein
MKNFAKRRDRYDLFRAFDNPLVNINFQLDVPDFRPWCKQRNIPVFHFFLFCLLNTVKGIDNFMYRICQGEVIRIDDFPASYTVINGDDNLNYTRFTMTDQLDLFIERSLEAKRLAEASSALINTGEGESEREQRNNIFITCLPWLELAAIEHPIYRHRDADIPTFTWGKFGPAQPDGRMRVPFSAQAHHGFVDGYHVQKLAQALGQRIAAIIA
>NZ_CP023422.1|WP_096235622.1|3753881_3754643_+|helix-turn-helix-transcriptional-regulator
MDDFYTEVPRPLIATARDYAPGAIFPSHSHARGQFAYAARGVISVHTPQGNWLVPPQRACWVPARLPHGMRMHGAVNMHNVFIDEAAIFKMGLPPDCQVLDASPLLRQLLAEAVSVEALYAEESRAGRLMALLLDEIAAMAPLPLSAPLPQDARLARLCTQLLQQPSLDHSLDAMAAQAGMSRRTFTRQFRTQTGLAFAQWRQQACLLAAITRLAEGQAVTRVALDLGYASPSAFTAAFRRVLGQAPSDYLSN
>NZ_CP023422.1|WP_096235621.1|3753031_3753796_-|alpha/beta-hydrolase
MHNSYHRVGHGPHAVIVLHGWFGDAHAFAPMEVALDGAAFSYVFMDNRGYGGMRGAAGAYSMEEVARDALALADALGFATFSVVGHSMGGMALERLALLAPLRVRKLVAVAPVPSCGVSMDAAARALFLDARGNKQARRAIIDRSTGGRLPATWLDWKAQYSWESADPAAFARYFLAWSDTDFSGEVMRAALKLPLLALVGEHDPRFDAALMRRTYLAWYPQARLEVLGNAGHYPMNETPLALAASIEAFLSAQ
>NZ_CP023422.1|WP_096235620.1|3752387_3753029_+|LysE-family-transporter
MHLSNWLLFCSVALLVTFSPGPAVLLAISNAIAVGPRRAMISSMGNGFGLFIISGVAMAGMGVVLATSATAFMLLKLAGALYLVYLGIKQWRSKTSIVADAPVALGAANPNSFWKLFRQGLTVALTNPKAILFFSALFPQFITPGEPVAIQFTVLTTSFVACAMLAHLFYANLARLLKTQLATPGRAKLFNRISGGAFVLLGLSLLRLRAKTA
>NZ_CP023422.1|WP_096235619.1|3751186_3752281_+|YeiH-family-putative-sulfate-export-transporter
MEYSMSSLSTTTTTSFSDRYGRLLPGLMLSGAIAWGAIALGKLEWMQSHGMSALTLAIMLGIALGNSVYGRLAPACGAGVTFSKQTLLRLGIILYGFRLTFQDIGQVGLAGIAIDALVLASTFGLAMFLGTKVFKLELNSAILIGAGSSICGAAAVMATEPVVKGRSEDVTVAVSTVVVFGTIAIFLYPLLYQLNLGWQVLGATPAAFGVYIGSTVHEVAQVVAAGKSIGQEAANAAVIAKMVRVMMLAPFLVILSAVLARGKAQGANGSHDKASKLAIPWFAFIFIAVVAFNSLGLLPAGTVATITELDTVLLAMAMAALGLTTHMSAIRRAGIKPLLLAGVLFCWLIAGGAAINHVVASLFA
>NZ_CP023422.1|WP_096235618.1|3750193_3751093_-|LysR-family-transcriptional-regulator
MALTLRQLQIFLAVADTGSTSAAGEQIALSQSATSAALNELETLLGAQLFDRVGKRLLLNDNGRLLLPQARQMRDGAASIERQFAGADPSVPVSLQIGASTTIGIYLLPQILAQAAQQYGRSIPQVTIANTADIAAAVAEFRVDIGLIEGPCHEAGLLVEPWLTDQMLIVAAPTHPLAQLRHLLSFAELNQAGWLLREAGSGTREAVEQALVPYLHYLRPAGEFSNSEAIKYGAAAGLGIACLSRVVVADLLASGQLVELETMLPPLERNFYLIRQSKKILSPRLSGFLELCRHASRMA
>NZ_CP023422.1|WP_096238503.1|3749588_3750161_-|helix-turn-helix-transcriptional-regulator
MENLLSTENDTEQRLAARLKQLRVERGWSLDQLANMSQVSRATLSRLENGEVSPTTVVLGKLCAAYGLAMSRLLRMVEDDFPPLLRRAEQSVWTDPDSGFIRRSVSPPSRALAGEALECELGAGVTITYAASPRPGMEHHLLLQEGQLNVTVDGRSHDLMPGDCLRYQLQGASAFATPPDSGARYFLFLV
>NZ_CP023422.1|WP_167389765.1|3749056_3749584_-|GNAT-family-N-acetyltransferase
MMPASLRSFSSADILERLPELGALQQDCVHDGASIGFILPFDVAASQAFWTDNVLPAVTRGVRLLLVAEVEGKVAGAVQLDWDTNPNQAHRAEVRKLLVAPAYRRLGLARQLMLALEEQARLLPRSLLTLDTRSGDHAEPLYLSLGYVVAGSIPAYALAPAGDRLDATTIMYKQL
>NZ_CP023422.1|WP_096235616.1|3747637_3749035_+|HAMP-domain-containing-protein
MKLSNIRIGVRLTTGFLLASLLLAVVVGISTWQLATVSGEIDSSVNQRYARIAQLQATRNRTQEQPALRDIDQQIATQSAQMRAAAETAMARAHDTSVLIIALGLIGGVLSLVTAWFISSGIVRPLRHAVKVARKVAGGDLSGNIRVESGDEVGQLLQALKDMNASLITIVGDVRGGTQDIAGASGEIAAGNLDLSQRTQAQASSLEQTAASMEELTGTVKQNADNARQANQLAQSAADVAGKGGKVVAEVVDTMSSINASSKKIVDIIGVIDAIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAGAAREIKQLIGDSVERIDAGARLVDTAGATMREIVASVHRVTDIMGEISMASGEQLSGIEQVNAAIVQMEHVTQENAALVEQASTAAASMQQRAQQLSGTVGIFTLGNEVAPPHAALAISLVTTQVTTHDTAAPALARSRAPAVRARLKA
>NZ_CP023422.1|WP_096235623.1|3760145_3760442_-|pentapeptide-MXKDX-repeat-protein
MKTTITTFAAIIASAILMSGAAFAQDAMKKDPMAKDASADAMHKDAMDKDGMKKPMAKKHMKKDHMAKDGMAKDAMAKDGMKKDEMKKDDMKKDAMGK
>NZ_CP023422.1|WP_096235624.1|3760532_3761309_-|molybdopterin-dependent-oxidoreductase
MIMKKTIIVQAQGQAMLADALRQIKQPSRRLFLQRSLSLGGLSLLTGCNVSDPSSIETALTAVSRFNDTVQGWLFDPTKLAPTYPDSMITRPFPFNAYYGEDEVEEVDGDAWRLELSGLIADKKPWSLPQLRALPQETQITRHICVEGWSAIGRWGGVPFSHFLKRVGADTTAKYIGFQCADDYFTSIDMATALHPQTIMALTYDGEELPPKYGYPMKLRMPTKLGYKNPKHIQAIFVTNTYPGGYWENQGYNWFGGS
>NZ_CP023422.1|WP_096235625.1|3761314_3761920_-|DUF4405-domain-containing-protein
MHTHIDSNAVIHPAWLRLTHWLNAVAVVVLATSGWRIYNAAPFFPFELPRVLTLGGWLGGALQWHFAAMWLLVVNGLLYLTINIASGRLRRQFFPLSPRLLLADFMAALKGKLAHADPRRYNMVQRAAYLFVMVDCIVLVLSGLVLWKSVQFPLLRELLGGYESARRVHFIAMALLVGFVGVHLLMVALVPRTLVAMLRGR
>NZ_CP023422.1|WP_096235626.1|3761919_3762726_-|DUF1223-domain-containing-protein
MHIKHRLAASLVPLCLWAATAPAYAQLAAGQRCAVQSGPQTAALVELYSSEGCSSCPPADQRLNALRKEAGAASLVVPLALHVTYWDQIGWTDPLAQAQFDARQAELLRHQPRHVAYTPQFFVGGTELRSWDTQLPAAIRRINATAAPVNISLSATPGQGGKLLLEANASAPDAQTGGQLYVAISESGIVSTVLRGENRGATLHHDAAVRLWLGPVALAQGRARLRREVNLPASWRPEYLQVVAFVQRADSSAILQAVSTAPCAKGVL
>NZ_CP023422.1|WP_096235627.1|3762854_3763454_+|sigma-70-family-RNA-polymerase-sigma-factor
MQRIPVSEHLHGTELRLHGLMLRGLDGDAGAYRNFLQASSAHLRAFFRRRLQRWPDEVEDLVQECLLAIHNQRLTYDTGVPLTSWIHAIARYKLIDWLRRHGRREAQHQPYDEEDDTQQLFSSADAEAAEASRDLGKLLATLPAQQRDAIVHTKLEGWSVRDTAAAMDISEASVKVAVHRGLKALAANLRIEETHHENR
>NZ_CP023422.1|WP_096235628.1|3763440_3764088_+|DUF1109-domain-containing-protein
MKTDDLIAMLASGPDVAAAAPPGTHWRAAGTVGAGLLASVALMAMLLGVRPNLEQLALLPDFWIKVGFVACVCLAAWHVSRRLCVPGASTRALPLLLALPVLLMWALGAIILNEAPPEQRAELFWGATWRSCPLLIATLSLPILAAVLRLMRQLAPTRLRLAGAAAGFAAGAMAALVYCLHCPELAASFIGFWYVLGMLVPTAIGATLGPKVLAW
>NZ_CP023422.1|WP_096235629.1|3764207_3765704_+|DUF4331-domain-containing-protein
MSLSISKTALGAAILGNFLAAAIAPPAFASSHREAPFITQNPKVDATDFYMFRSYETGRGAYTTLVADYIPLQDAYGGPNYFAMDPNALYEIHIDNNGDGKEDLTFQFRFSNTIKDGQFTVGGKKVSIPLVINGGAIDSVNPAGLNVRETYSVTVVRGDRRTGTRSSVTNATGGGTTFDKPVDNIGTKSIPNYAAYAAQHVYAVNIPGCATPARLFVGQRKDPFVVNLGETFDLINIKAPATEFAANAESAAKDDLARKNVTAIEMEVPTACLTAGLEPVIGGWTTASLRQGRLLNPAPGSTAASKEGGAWVQVSRLGMPLVNELVIGLKDKDRFNASKPSGDAQFADYVTNPTAPALVEVLFGSAGAKAPTNFPRNDLVATFLTGIKGVNQPVTVTASEMLRLNTSIAPTAVGSQKRLGVIDGDNAGFPNGRRPGDDVVDVVLRVAMGKLCTLNIGCAPADAPAGALHFTDGAFLDETFFTAGFPYLKTPVAGSPQL
>NZ_CP023422.1|WP_096235630.1|3765717_3765960_+|hypothetical-protein
MKKLHLLSALALTALLAGCGGGSSSHGDDNGGTTPPPVVLLDAFYVAVSNVILTTSDDKDGVGIDAIMATSPEDTEPVPL
>NZ_CP023422.1|WP_096238507.1|3766024_3767239_+|hypothetical-protein
MMKTPLPLLCACLPLLACAAPYTPKDGSAVIEQLPRRADATQLALRGLRQQLNATPDDLAMATGLAQRYIALARSETDPRYLGYAQAALAPWWRQTAPPLPVRLLRATILQSTHQFGPALQDLDAVIAQQPQHAQAWLTRATVLTVQGDYTQATAACARLSALTTQLVTVTCLANIASVTGRAASSERLLDLTLRRSAGTAPELDSWALTLLAEMATRRGELALAEARYQQALAQQPRDSYLLGAYGDFLLDRQRPQDVVKLLKDQQRIDALLLRYALALQALPGKQTAFLAAKAELAARFNAAMQRGDTVHQREQARFTLFLQQDAPAALQLAQQNWAIQKEVPDMRILLEAALAARNDEAAQPVLAWIEANGVEDTALQRLVRQLGPQDGQKVSFVKKAGVL
>NZ_CP023422.1|WP_096235631.1|3767235_3768357_+|HupE/UreJ-family-protein
MKRCLFILLLCAWLAPAQAHKPSDSYLSLAVHDRQIEGQWDIALRDLDFAIGLDGNGDGALTWDEIRARHAAIAAYALQRLQVTSDQGACPLTAVEQLIDHHTDGAYSVLRFRADCPGGAAPASMTIGYTLFADLDPQHKGLVKINSGGTTQTAIFDPDSPRQTISLAAPDRLAQFGAYVKHGIWHIWIGYDHILFLLSLLLPAVLLPGLREQQHGLKAAFVDVLKVVTAFTLAHSLTLSLASLSVVSLPSRWVESAIAASVILAALNNLLPLFRGKRPVAAFVFGLIHGFGFASVLRDLGLPQGSLLASLLGFNLGVEIGQLAIVAAFLPVAWLLRKTWLYRQVLTVGSVAIAVVACVWLVERIADIKLISA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023422_3	3.1\|3758557\|28\|NZ_CP023422\|CRISPRCasFinder	3758557-3758584	28	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	61121-61148	7	0.75
NZ_CP023422_3	3.1\|3758557\|28\|NZ_CP023422\|CRISPRCasFinder	3758557-3758584	28	NZ_CP019193	Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717 plasmid pATCC10717, complete sequence	44137-44164	7	0.75

1. spacer 3.1|3758557|28|NZ_CP023422|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 7, identity: 0.75

cggcgccgccactgagcatattgccgct	CRISPR spacer
ttacgccgccattgagcatattcccgtg	Protospacer
. .********.********** ***.

2. spacer 3.1|3758557|28|NZ_CP023422|CRISPRCasFinder matches to NZ_CP019193 (Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717 plasmid pATCC10717, complete sequence) position: , mismatch: 7, identity: 0.75

cggcgccgccactgagcatattgccgct	CRISPR spacer
acgcgccgccactcagcatactgcccgc	Protospacer
  *********** ******.****  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1576440 : 1661361

uncultured_Caudovirales_phage(23.08%)

protease,plate,integrase,tRNA

attL 1564887:1564903|attR 1626144:1626160

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1564887:1564903	attL	NA	NA	NA	NA
WP_096234092.1\|1576440_1578501_+\|protease	protease Lon-related BREX system protein BrxL	NA	NA	NA	NA
WP_096234093.1\|1578544_1579585_+	hypothetical protein	NA	NA	NA	NA
WP_096234094.1\|1579751_1580201_-	hypothetical protein	NA	NA	NA	NA
WP_096234095.1\|1580356_1581373_-	hypothetical protein	NA	NA	NA	NA
WP_096234096.1\|1581415_1581709_-	H-NS histone family protein	NA	NA	NA	NA
WP_096238315.1\|1581960_1582527_-	hypothetical protein	NA	NA	NA	NA
WP_157750928.1\|1583213_1583591_-	hypothetical protein	NA	NA	NA	NA
WP_096234098.1\|1583734_1585465_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_096234099.1\|1585788_1586634_-	glutamate racemase	NA	NA	NA	NA
WP_096234100.1\|1586701_1588243_-	fumarate hydratase	NA	NA	NA	NA
WP_096234101.1\|1588320_1588941_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	4.8e-19	31.2
WP_096234102.1\|1589233_1591240_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.6e-84	38.6
WP_096234103.1\|1591740_1593030_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	4.6e-64	35.4
WP_157750929.1\|1593040_1593664_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	9.1e-10	43.2
WP_096238316.1\|1593702_1593969_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_096234105.1\|1595137_1597597_+	SAM-dependent DNA methyltransferase	A0A2H4PQP4	Staphylococcus_phage	8.5e-67	34.7
WP_096238317.1\|1597604_1598867_+	hypothetical protein	NA	NA	NA	NA
WP_096234106.1\|1598869_1600531_+	ATPase	NA	NA	NA	NA
WP_096234107.1\|1600636_1603921_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.4e-64	26.2
WP_096234108.1\|1603917_1604613_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_157750930.1\|1605091_1608397_+	hypothetical protein	NA	NA	NA	NA
WP_096234110.1\|1608409_1614658_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	2.1e-45	23.0
WP_071079151.1\|1615172_1615559_+	BPSL0067 family protein	NA	NA	NA	NA
WP_157750931.1\|1615568_1616003_+	hypothetical protein	NA	NA	NA	NA
WP_096234112.1\|1616183_1617764_-	isocitrate lyase	NA	NA	NA	NA
WP_071079147.1\|1618110_1619415_-	MFS transporter	NA	NA	NA	NA
WP_096234113.1\|1619567_1620284_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_096234114.1\|1620425_1620947_-	DUF1993 domain-containing protein	NA	NA	NA	NA
WP_096234115.1\|1621146_1621692_+	hypothetical protein	NA	NA	NA	NA
WP_096234116.1\|1621805_1622231_+	hypothetical protein	NA	NA	NA	NA
WP_096234117.1\|1622252_1622684_+	hypothetical protein	NA	NA	NA	NA
WP_096234118.1\|1622787_1623744_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_096234119.1\|1623865_1624489_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_096234120.1\|1624605_1625412_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_096234121.1\|1625582_1627766_+	TonB-dependent receptor	NA	NA	NA	NA
1626144:1626160	attR	NA	NA	NA	NA
WP_096234122.1\|1627850_1628846_+	PHB depolymerase family esterase	NA	NA	NA	NA
WP_167389622.1\|1628924_1629788_+	hypothetical protein	NA	NA	NA	NA
WP_096234124.1\|1629860_1632656_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.3e-95	34.6
WP_096234125.1\|1632674_1634951_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	2.7e-27	31.9
WP_096234126.1\|1635036_1636668_+	DUF2875 family protein	NA	NA	NA	NA
WP_096234127.1\|1636681_1636948_+	hypothetical protein	R9U4D0	Rhizobium_phage	8.4e-05	53.3
WP_146009904.1\|1637048_1637696_+	hypothetical protein	NA	NA	NA	NA
WP_096234129.1\|1637735_1638170_+	DUF695 domain-containing protein	NA	NA	NA	NA
WP_096234130.1\|1638170_1639064_-	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	1.4e-67	50.7
WP_096234131.1\|1639056_1641741_-	PAS domain-containing protein	NA	NA	NA	NA
WP_096234132.1\|1642260_1644486_+	TonB-dependent receptor	NA	NA	NA	NA
WP_096234133.1\|1644562_1645492_-\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_157750933.1\|1645619_1646471_-	hypothetical protein	NA	NA	NA	NA
WP_096234134.1\|1646523_1646913_-	hypothetical protein	NA	NA	NA	NA
WP_157750935.1\|1647644_1647965_-	hypothetical protein	NA	NA	NA	NA
WP_157750936.1\|1647994_1648456_-	hypothetical protein	NA	NA	NA	NA
WP_157750937.1\|1648533_1649139_-	hypothetical protein	NA	NA	NA	NA
WP_157750938.1\|1649179_1649464_-	hypothetical protein	NA	NA	NA	NA
WP_157750939.1\|1649524_1649980_-	hypothetical protein	NA	NA	NA	NA
WP_096234135.1\|1649980_1654975_-	DUF4150 domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	5.4e-36	39.1
WP_096234136.1\|1654971_1656270_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_096234137.1\|1656272_1658414_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.7e-29	25.0
WP_096234138.1\|1658491_1659544_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_096234139.1\|1659507_1661361_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

1798146 : 1832466

Burkholderia_phage(40.0%)

portal,tail,head,integrase,capsid,plate,terminase

attL 1819423:1819439|attR 1840388:1840404

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096234253.1\|1798146_1799298_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	3.2e-133	62.3
WP_096234254.1\|1799757_1800483_-	hypothetical protein	NA	NA	NA	NA
WP_096234255.1\|1800479_1800725_-	hypothetical protein	NA	NA	NA	NA
WP_096234256.1\|1800735_1801077_-	hypothetical protein	NA	NA	NA	NA
WP_167389627.1\|1801070_1801223_-	hypothetical protein	NA	NA	NA	NA
WP_157750945.1\|1801260_1803057_-	replication endonuclease	A4JWW0	Burkholderia_virus	6.7e-106	42.3
WP_051959600.1\|1803046_1803229_-	hypothetical protein	NA	NA	NA	NA
WP_096234257.1\|1803501_1803903_-	hypothetical protein	NA	NA	NA	NA
WP_096234258.1\|1804023_1804287_-	ogr/Delta-like zinc finger family protein	A4JWR6	Burkholderia_virus	2.0e-14	45.7
WP_096234259.1\|1804283_1804472_-	hypothetical protein	E5E3T9	Burkholderia_phage	3.3e-08	58.6
WP_035820909.1\|1804509_1804713_-	hypothetical protein	E5E3U0	Burkholderia_phage	2.4e-12	61.0
WP_070305601.1\|1804723_1804927_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_096234261.1\|1805006_1805450_+	helix-turn-helix transcriptional regulator	K4NXA8	Burkholderia_phage	3.2e-33	52.0
WP_157750946.1\|1805457_1806306_+	hypothetical protein	NA	NA	NA	NA
WP_157750947.1\|1806336_1806882_+	hypothetical protein	NA	NA	NA	NA
WP_096234264.1\|1807336_1807969_+	hypothetical protein	NA	NA	NA	NA
WP_096234265.1\|1808217_1808526_-	XRE family transcriptional regulator	A0A1I9L2L2	Xanthomonas_phage	3.0e-06	48.3
WP_167389745.1\|1808529_1808856_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_096234267.1\|1808925_1810203_-	phage late control D family protein	K4PAY4	Burkholderia_phage	3.7e-82	48.3
WP_096234268.1\|1810199_1810808_-	oxidoreductase	A0A2H4JG54	uncultured_Caudovirales_phage	5.0e-37	57.6
WP_157750948.1\|1810824_1813713_-\|tail	phage tail protein	A4PE52	Ralstonia_virus	9.8e-240	50.8
WP_071650277.1\|1813728_1813842_-\|tail	GpE family phage tail protein	E5E3U7	Burkholderia_phage	2.9e-07	70.3
WP_096234270.1\|1813850_1814159_-\|tail	phage tail assembly protein	E5E3Q1	Burkholderia_phage	1.4e-19	55.8
WP_096234271.1\|1814196_1814706_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	2.0e-39	50.6
WP_096234272.1\|1814762_1815938_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	7.7e-151	68.8
WP_096234273.1\|1815981_1816446_-	hypothetical protein	NA	NA	NA	NA
WP_096234274.1\|1816448_1818203_-	hypothetical protein	A0A0M3ULH6	Salmonella_phage	1.1e-55	62.7
WP_096238328.1\|1818199_1818799_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	7.8e-67	62.4
WP_096234275.1\|1818812_1819721_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.8e-78	56.3
1819423:1819439	attL	NA	NA	NA	NA
WP_096234276.1\|1819717_1820059_-	oxidoreductase	E5E3V5	Burkholderia_phage	9.4e-25	53.0
WP_096234277.1\|1820055_1820718_-\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	5.8e-31	40.4
WP_096234278.1\|1820825_1821344_-	nucleotide-binding protein	NA	NA	NA	NA
WP_157750949.1\|1821340_1821739_-	hypothetical protein	NA	NA	NA	NA
WP_096234279.1\|1821927_1822395_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	9.8e-33	49.4
WP_096234280.1\|1822391_1822880_-\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	2.4e-34	45.6
WP_096238329.1\|1822863_1823361_-	lysozyme	NA	NA	NA	NA
WP_096238330.1\|1823384_1823927_-	hypothetical protein	G0YQI3	Erwinia_phage	2.5e-48	56.3
WP_096234281.1\|1823947_1824319_-	hypothetical protein	NA	NA	NA	NA
WP_096234282.1\|1824365_1824575_-\|tail	phage tail protein	A0A1W6JT40	Escherichia_phage	5.9e-06	43.9
WP_096234283.1\|1824574_1825126_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	2.6e-32	54.8
WP_096234284.1\|1825183_1825900_-\|integrase	integrase	K4NX86	Burkholderia_phage	1.0e-41	45.9
WP_096234285.1\|1825903_1826920_-\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	2.0e-118	62.8
WP_096234286.1\|1826968_1827757_-\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	3.3e-57	48.7
WP_096238331.1\|1827894_1829706_+\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	1.5e-233	66.2
WP_096234287.1\|1829621_1830764_+\|portal	phage portal protein	K4NZV0	Burkholderia_phage	1.7e-126	59.3
WP_096234288.1\|1830760_1830976_+	hypothetical protein	NA	NA	NA	NA
WP_157750950.1\|1831259_1831817_+	hypothetical protein	NA	NA	NA	NA
WP_096234290.1\|1831827_1832466_+	SOS response-associated peptidase	A0A218MNF5	uncultured_virus	6.6e-40	41.9
1840388:1840404	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2082081 : 2090098

Burkholderia_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096238354.1\|2082081_2082675_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	6.4e-21	44.5
WP_096234456.1\|2082732_2082999_-	hypothetical protein	NA	NA	NA	NA
WP_096238355.1\|2083065_2083869_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_096234457.1\|2084116_2084683_+	PAAR domain-containing protein	Q8W6S2	Burkholderia_virus	7.0e-25	38.8
WP_096234458.1\|2084679_2085396_+	VRR-NUC domain-containing protein	A4JX24	Burkholderia_virus	2.2e-44	48.5
WP_096234459.1\|2085398_2086484_+	DUF3396 domain-containing protein	A4JX25	Burkholderia_virus	4.3e-55	38.2
WP_096234460.1\|2086672_2087689_+\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	6.1e-112	63.4
WP_096234461.1\|2088181_2088523_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_096234462.1\|2088577_2090098_+\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	7.8e-87	38.5

DBSCAN-SWA_4

2140606 : 2189400

Burkholderia_phage(28.57%)

portal,tRNA,tail,head,integrase,transposase,capsid,plate

attL 2139955:2139973|attR 2193059:2193077

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2139955:2139973	attL	NA	NA	NA	NA
WP_167389631.1\|2140606_2141785_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A2H4J5F8	uncultured_Caudovirales_phage	1.1e-48	33.9
WP_096234494.1\|2141749_2141929_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_157750960.1\|2141928_2142096_-	hypothetical protein	NA	NA	NA	NA
WP_096234495.1\|2142111_2142963_-	phosphoadenosine phosphosulfate reductase family protein	A0A1P8VV89	Erythrobacter_phage	2.3e-48	42.4
WP_096238359.1\|2142959_2143505_-	hypothetical protein	NA	NA	NA	NA
WP_096234496.1\|2143570_2143810_-	hypothetical protein	NA	NA	NA	NA
WP_167389632.1\|2143803_2143956_-	hypothetical protein	NA	NA	NA	NA
WP_096234497.1\|2143952_2145791_-	replication endonuclease	A4JWW0	Burkholderia_virus	6.9e-106	43.8
WP_096234498.1\|2145780_2146134_-	hypothetical protein	NA	NA	NA	NA
WP_096234499.1\|2146235_2146637_-	hypothetical protein	NA	NA	NA	NA
WP_096234500.1\|2146757_2147021_-	ogr/Delta-like zinc finger family protein	A4JWR6	Burkholderia_virus	5.7e-14	45.6
WP_046682347.1\|2147017_2147206_-	hypothetical protein	E5E3T9	Burkholderia_phage	3.0e-09	58.6
WP_035820909.1\|2147243_2147447_-	hypothetical protein	E5E3U0	Burkholderia_phage	2.4e-12	61.0
WP_096234501.1\|2147457_2147661_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_096234502.1\|2147743_2148187_+	helix-turn-helix transcriptional regulator	K4NXA8	Burkholderia_phage	7.1e-33	50.7
WP_157750961.1\|2148426_2149008_+	hypothetical protein	NA	NA	NA	NA
WP_096234504.1\|2148979_2149390_+	nucleotidyltransferase	NA	NA	NA	NA
WP_167389633.1\|2149453_2150791_+	hypothetical protein	NA	NA	NA	NA
WP_096234505.1\|2151052_2151523_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_157750963.1\|2151524_2151758_-	hypothetical protein	NA	NA	NA	NA
WP_096234506.1\|2151756_2152197_+	hypothetical protein	NA	NA	NA	NA
WP_096234507.1\|2152201_2153470_-	phage late control D family protein	K4PAY4	Burkholderia_phage	1.5e-83	49.2
WP_096234508.1\|2153466_2154075_-	oxidoreductase	A0A2H4JG54	uncultured_Caudovirales_phage	1.3e-37	59.1
WP_157750964.1\|2154090_2156886_-\|tail	phage tail protein	A4PE52	Ralstonia_virus	1.5e-232	51.2
WP_071650277.1\|2156961_2157075_-\|tail	GpE family phage tail protein	E5E3U7	Burkholderia_phage	2.9e-07	70.3
WP_096234510.1\|2157083_2157392_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	6.9e-19	52.1
WP_096234511.1\|2157430_2157940_-\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	6.7e-51	55.6
WP_096234512.1\|2157997_2159173_-\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	1.5e-151	68.0
WP_096234513.1\|2159249_2161310_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	2.2e-44	52.2
WP_096234514.1\|2161317_2162049_-\|tail	phage tail protein I	A0A077KER5	Ralstonia_phage	5.4e-54	58.8
WP_096234515.1\|2162029_2162932_-\|plate	baseplate assembly protein	A0A077K9X9	Ralstonia_phage	8.1e-92	63.1
WP_096234516.1\|2162928_2163273_-	oxidoreductase	V5YTB2	Pseudomonas_phage	6.8e-23	54.7
WP_096238360.1\|2163269_2163932_-\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	2.9e-30	39.9
WP_157750965.1\|2164106_2165066_-	hypothetical protein	NA	NA	NA	NA
WP_096234517.1\|2165183_2165651_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	9.5e-36	52.6
WP_096234518.1\|2165647_2166136_-\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	9.3e-34	45.6
WP_096234519.1\|2166119_2166641_-	lysozyme	NA	NA	NA	NA
WP_096234520.1\|2166640_2167201_-	hypothetical protein	G0YQI3	Erwinia_phage	1.6e-45	54.6
WP_096234521.1\|2167200_2167572_-	hypothetical protein	NA	NA	NA	NA
WP_096234522.1\|2167618_2167828_-\|tail	phage tail protein	NA	NA	NA	NA
WP_096234523.1\|2167827_2168322_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	3.9e-32	52.4
WP_096234524.1\|2168424_2169141_-\|integrase	integrase	K4NX86	Burkholderia_phage	2.1e-42	46.3
WP_096234525.1\|2169144_2170161_-\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	6.7e-119	63.4
WP_096234526.1\|2170220_2171012_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	2.2e-56	46.9
WP_096238361.1\|2171147_2171618_+	hypothetical protein	A0A077K8Q7	Ralstonia_phage	7.6e-33	58.0
WP_167389594.1\|2171548_2172748_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	4.5e-98	47.6
WP_096234527.1\|2174207_2175356_+\|portal	phage portal protein	K4NZV0	Burkholderia_phage	2.9e-126	59.4
WP_096234528.1\|2175352_2175568_+	hypothetical protein	A0A221SAN3	Ralstonia_phage	5.2e-05	38.9
WP_096238362.1\|2176041_2176458_+	PAAR domain-containing protein	A4PE23	Ralstonia_virus	5.5e-27	51.9
WP_096238363.1\|2176502_2176964_+	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	6.9e-47	57.9
WP_096238364.1\|2176947_2177295_+	hypothetical protein	NA	NA	NA	NA
WP_096234529.1\|2177294_2177885_+	hypothetical protein	A4PE25	Ralstonia_virus	2.3e-15	37.3
WP_096234530.1\|2177889_2178627_+	hypothetical protein	A4PE26	Ralstonia_virus	8.8e-36	44.9
WP_096234531.1\|2178915_2179305_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_077238433.1\|2179301_2179529_-	transcriptional regulator	NA	NA	NA	NA
WP_096234532.1\|2180375_2180876_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_096234533.1\|2181166_2182504_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	9.6e-65	33.2
WP_157750966.1\|2182768_2184244_-	serine hydrolase	NA	NA	NA	NA
WP_096234535.1\|2184796_2185192_+	VOC family protein	NA	NA	NA	NA
WP_167389634.1\|2185188_2185416_+	hypothetical protein	NA	NA	NA	NA
WP_157751330.1\|2185495_2186830_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_096234536.1\|2187231_2187597_-	hypothetical protein	NA	NA	NA	NA
WP_096234537.1\|2188635_2188833_+	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_096234538.1\|2188902_2189400_+\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
2193059:2193077	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4886773 : 4928157

Burkholderia_phage(38.46%)

portal,tail,head,protease,integrase,holin,capsid,terminase

attL 4893714:4893730|attR 4908539:4908555

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096236993.1\|4886773_4887532_+\|holin	choline dehydrogenase	NA	NA	NA	NA
WP_096236996.1\|4887588_4889667_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_096236999.1\|4889816_4890434_+	hypothetical protein	NA	NA	NA	NA
WP_157751210.1\|4890578_4891607_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_096237005.1\|4891608_4892379_+	PIG-L family deacetylase	NA	NA	NA	NA
WP_096237008.1\|4892375_4893020_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_096237011.1\|4893016_4893733_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
4893714:4893730	attL	NA	NA	NA	NA
WP_096237013.1\|4893729_4895742_-	S9 family peptidase	NA	NA	NA	NA
WP_096237016.1\|4895997_4896405_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_096237019.1\|4896341_4896848_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_096237023.1\|4896850_4897513_-	hypothetical protein	NA	NA	NA	NA
WP_167389587.1\|4897709_4898117_+	hypothetical protein	NA	NA	NA	NA
WP_096237025.1\|4898004_4898295_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_157751212.1\|4898483_4899824_-	hypothetical protein	NA	NA	NA	NA
WP_096237027.1\|4900306_4901734_+\|integrase	site-specific integrase	A0A2H4IYX8	uncultured_Caudovirales_phage	6.0e-57	40.1
WP_096238609.1\|4901906_4902080_+	excisionase	NA	NA	NA	NA
WP_096237029.1\|4902519_4902762_-	hypothetical protein	NA	NA	NA	NA
WP_167389704.1\|4902772_4902955_-	hypothetical protein	NA	NA	NA	NA
WP_157751214.1\|4903023_4903494_-	hypothetical protein	NA	NA	NA	NA
WP_096237033.1\|4903525_4903870_-	hypothetical protein	A0A218MNF5	uncultured_virus	7.3e-09	50.7
WP_157751216.1\|4904003_4904294_+	hypothetical protein	NA	NA	NA	NA
WP_157751218.1\|4904424_4904712_+	hypothetical protein	NA	NA	NA	NA
WP_096237039.1\|4905400_4905697_-	hypothetical protein	NA	NA	NA	NA
WP_096237041.1\|4905693_4906089_-	hypothetical protein	NA	NA	NA	NA
WP_096237043.1\|4906085_4906550_-	peptidase M15A	C7BGD8	Burkholderia_phage	9.1e-23	44.3
WP_096237045.1\|4906546_4906786_-	hypothetical protein	NA	NA	NA	NA
WP_096237047.1\|4906788_4907121_-	peptidase M48, Ste24p	NA	NA	NA	NA
WP_096237049.1\|4907188_4908343_-\|tail	tail fiber domain-containing protein	A0A2I7RDR8	Vibrio_phage	4.0e-27	43.5
WP_096237051.1\|4908343_4909198_-	hypothetical protein	NA	NA	NA	NA
4908539:4908555	attR	NA	NA	NA	NA
WP_096237053.1\|4909199_4911788_-	hypothetical protein	NA	NA	NA	NA
WP_096237055.1\|4911784_4913254_-	hypothetical protein	NA	NA	NA	NA
WP_096237057.1\|4913250_4918428_-	tape measure protein	A0A1W6JNU2	Morganella_phage	6.0e-14	23.2
WP_096237059.1\|4918494_4918884_-	hypothetical protein	NA	NA	NA	NA
WP_096237061.1\|4918919_4919345_-	hypothetical protein	NA	NA	NA	NA
WP_096237062.1\|4919460_4919913_-	hypothetical protein	NA	NA	NA	NA
WP_096237064.1\|4919994_4920402_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_096237066.1\|4920398_4920617_-	hypothetical protein	NA	NA	NA	NA
WP_157751220.1\|4920624_4921110_-	hypothetical protein	Q9MCS9	Enterobacteria_phage	8.1e-06	29.1
WP_096237070.1\|4921109_4921457_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_096237072.1\|4921456_4921798_-\|head,tail	phage gp6-like head-tail connector protein	C4ML08	Xanthomonas_virus	1.9e-09	36.5
WP_167389705.1\|4921801_4921963_-	hypothetical protein	NA	NA	NA	NA
WP_096238610.1\|4922015_4923266_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	5.1e-145	63.0
WP_096237074.1\|4923298_4924150_-\|protease	Clp protease ClpP	Q3HQS9	Burkholderia_phage	3.1e-101	70.1
WP_096237076.1\|4924127_4925441_-\|portal	phage portal protein	Q3HQS8	Burkholderia_phage	3.3e-126	54.5
WP_096238611.1\|4925444_4927133_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	1.6e-173	55.9
WP_096237078.1\|4927132_4927546_-	hypothetical protein	Q2NPI9	Xanthomonas_virus	2.0e-05	45.7
WP_096237080.1\|4927749_4928157_-	HNH endonuclease	B5WZZ4	Pseudomonas_phage	2.7e-18	40.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023422

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection