CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017156	Macrococcus sp. IME1552 chromosome, complete genome	4 crisprs	cas1,cas2,csa3,DEDDh,cas3,DinG,WYL	1	19	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017156_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017156_1

26284-27573

Consensus_repeat	Method
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	CRISPRCasFinder
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	CRT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATT	PILER-CR
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	PILER-CR
CCGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	PILER-CR

19 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP017156_1

>merge|NZ_CP017156|1|26284-27573|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTAACCACATCACCAGCCATTGCAATCACTGGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGAAGTTTACCTGTCAAATTATTTCCTGATGGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTATGCACCTACTTACTCGTATCAAAACTATGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTATTTTTATTAGGTGTAATTTTAATAGATTGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTAACCACATCACCAGCCATTGCAATCACTGGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTCTGCTTTTGTATGGTTGCCTATTTTTTCGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATCTGTGCTTGTTGAATTGATACCAGCTTCATGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTCATGGCATTTAAACCACCAATTGCAGCATGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTTAAACAAAACTGTAGAGGTTATCATTCCAAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGACAATCACAGTTAAAGCGAAAGATGCAGCGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTTACTGATATGGCTTCAAACGCTGTAGCAGGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTGTCAAGAGGCGTAAATAACGTAATAAGTAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGATATATAGTAATGTTTACCACGATATTCAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGCATGAAGCAGTGCTTGATGTATACAAGGAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTTAAAGCTACTGCAGAACTTGAAAAGCAGCGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGTGTCCCAAATCATCTCGTGCTGAAATGCCGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGTGTCCCAAATCATCTCGTGCTGAAATGCCGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATAACCTTAGTGCGTATAGCATTAGGAATACTGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATAACTGCAAGTTCACCATATTAAACCACGTGGTTTTAGTACTCTGTGAAATATGGATTCTGACCAAC

>NZ_CP017156|1|1|26284-27507|CRISPRCasFinder
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TAACCACATCACCAGCCATTGCAATCACTG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GAAGTTTACCTGTCAAATTATTTCCTGATG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TATGCACCTACTTACTCGTATCAAAACTAT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TATTTTTATTAGGTGTAATTTTAATAGATT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TAACCACATCACCAGCCATTGCAATCACTG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TCTGCTTTTGTATGGTTGCCTATTTTTTC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	CTGTGCTTGTTGAATTGATACCAGCTTCAT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TCATGGCATTTAAACCACCAATTGCAGCAT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTAAACAAAACTGTAGAGGTTATCATTCCAA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GACAATCACAGTTAAAGCGAAAGATGCAGC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTACTGATATGGCTTCAAACGCTGTAGCAG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TGTCAAGAGGCGTAAATAACGTAATAAGTA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GATATATAGTAATGTTTACCACGATATTCA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GCATGAAGCAGTGCTTGATGTATACAAGGA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTAAAGCTACTGCAGAACTTGAAAAGCAGC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GTGTCCCAAATCATCTCGTGCTGAAATGCC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GTGTCCCAAATCATCTCGTGCTGAAATGCC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	AACCTTAGTGCGTATAGCATTAGGAATACT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT

>NZ_CP017156|1|1|26284-27573|CRT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TAACCACATCACCAGCCATTGCAATCACTG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GAAGTTTACCTGTCAAATTATTTCCTGATG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TATGCACCTACTTACTCGTATCAAAACTAT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TATTTTTATTAGGTGTAATTTTAATAGATT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TAACCACATCACCAGCCATTGCAATCACTG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TCTGCTTTTGTATGGTTGCCTATTTTTTC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	CTGTGCTTGTTGAATTGATACCAGCTTCAT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TCATGGCATTTAAACCACCAATTGCAGCAT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTAAACAAAACTGTAGAGGTTATCATTCCAA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GACAATCACAGTTAAAGCGAAAGATGCAGC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTACTGATATGGCTTCAAACGCTGTAGCAG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TGTCAAGAGGCGTAAATAACGTAATAAGTA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GATATATAGTAATGTTTACCACGATATTCA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GCATGAAGCAGTGCTTGATGTATACAAGGA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTAAAGCTACTGCAGAACTTGAAAAGCAGC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GTGTCCCAAATCATCTCGTGCTGAAATGCC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GTGTCCCAAATCATCTCGTGCTGAAATGCC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	AACCTTAGTGCGTATAGCATTAGGAATACT
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	AACTGCAAGTTCACCATATTAAACCACGTG
GTTTTAGTACTCTGTGAAATATGGATTCTGACCAAC

>NZ_CP017156|1|1|26548-26715|PILER-CR
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATT	AACCACATCACCAGCCATTGCAATCACTG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATT	CTGCTTTTGTATGGTTGCCTATTTTTTC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATCTGTGCTTGTTGAATTGATACCAGCTTCATGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTCATGGCATTTAAACCACCAATTGCAGCATGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTAAACAAAACTGTAGAGGTTATCATTCCAA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GACAATCACAGTTAAAGCGAAAGATGCAGC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTACTGATATGGCTTCAAACGCTGTAGCAG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TGTCAAGAGGCGTAAATAACGTAATAAGTA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGATATATAGTAATGTTTACCACGATATTCAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGCATGAAGCAGTGCTTGATGTATACAAGGAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTTAAAGCTACTGCAGAACTTGAAAAGCAGCGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATG	TGTCCCAAATCATCTCGTGCTGAAATGC
CGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATG	TGTCCCAAATCATCTCGTGCTGAAATGC
CGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATA	ACCTTAGTGCGTATAGCATTAGGAATAC


>NZ_CP017156|1|2|26811-27111|PILER-CR
	AACCACATCACCAGCCATTGCAATCACTG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATT	CTGCTTTTGTATGGTTGCCTATTTTTTC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATCTGTGCTTGTTGAATTGATACCAGCTTCATGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTCATGGCATTTAAACCACCAATTGCAGCATGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTAAACAAAACTGTAGAGGTTATCATTCCAA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GACAATCACAGTTAAAGCGAAAGATGCAGC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTACTGATATGGCTTCAAACGCTGTAGCAG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TGTCAAGAGGCGTAAATAACGTAATAAGTA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGATATATAGTAATGTTTACCACGATATTCAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGCATGAAGCAGTGCTTGATGTATACAAGGAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTTAAAGCTACTGCAGAACTTGAAAAGCAGCGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATG	TGTCCCAAATCATCTCGTGCTGAAATGC
CGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATG	TGTCCCAAATCATCTCGTGCTGAAATGC
CGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATA	ACCTTAGTGCGTATAGCATTAGGAATAC


>NZ_CP017156|1|3|27273-27507|PILER-CR
	AACCACATCACCAGCCATTGCAATCACTG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATT	CTGCTTTTGTATGGTTGCCTATTTTTTC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATCTGTGCTTGTTGAATTGATACCAGCTTCATGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTCATGGCATTTAAACCACCAATTGCAGCATGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTAAACAAAACTGTAGAGGTTATCATTCCAA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	GACAATCACAGTTAAAGCGAAAGATGCAGC
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TTACTGATATGGCTTCAAACGCTGTAGCAG
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT	TGTCAAGAGGCGTAAATAACGTAATAAGTA
GTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGATATATAGTAATGTTTACCACGATATTCAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATGCATGAAGCAGTGCTTGATGTATACAAGGAGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATTTAAAGCTACTGCAGAACTTGAAAAGCAGCGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATG	TGTCCCAAATCATCTCGTGCTGAAATGC
CGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATG	TGTCCCAAATCATCTCGTGCTGAAATGC
CGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGATA	ACCTTAGTGCGTATAGCATTAGGAATAC
TGTTTTAGTACTCTGCGAAATTTAGTATAAGTGAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017156.1\|WP_096075825.1\|13256_13544_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP017156.1\|WP_096075835.1\|27880_29215_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP017156.1\|WP_096075841.1\|34522_35923_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NZ_CP017156.1\|WP_096075834.1\|25268_26258_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017156.1\|WP_096075833.1\|24951_25260_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP017156.1\|WP_096075838.1\|32003_32543_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017156.1\|WP_096075827.1\|15535_16099_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224292
NZ_CP017156.1\|WP_096075836.1\|29214_31116_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP017156.1\|WP_096075839.1\|32578_33001_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017156.1\|WP_096075837.1\|31145_31898_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|375893
NZ_CP017156.1\|WP_096075844.1\|37547_38876_-\|Ktr-system-potassium-transporter-B	unknown	unknown	gnl\|CDD\|273349
NZ_CP017156.1\|WP_096075826.1\|13597_15217_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP017156.1\|WP_096075843.1\|36993_37509_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP017156.1\|WP_096075840.1\|33069_33906_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017156.1\|WP_096075829.1\|17844_19065_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP017156.1\|WP_096075830.1\|19083_20241_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017156.1\|WP_096075831.1\|20871_24042_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_CP017156.1\|WP_096075842.1\|36041_37004_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017156.1\|WP_096075832.1\|24044_24947_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP017156.1\|WP_096075828.1\|16114_17767_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227059

Protein	Function_ID	Function_description	E-value
NZ_CP017156.1\|WP_096075825.1\|13256_13544_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.08095e-40
NZ_CP017156.1\|WP_096075835.1\|27880_29215_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	6.1156e-22
NZ_CP017156.1\|WP_096075828.1\|16114_17767_+\|hypothetical-protein	gnl\|CDD\|227059	COG4715, COG4715, Uncharacterized conserved protein [Function unknown].	9.53954e-05
NZ_CP017156.1\|WP_096075833.1\|24951_25260_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.21282e-30
NZ_CP017156.1\|WP_096075827.1\|15535_16099_+\|AAA-family-ATPase	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	8.59574e-13
NZ_CP017156.1\|WP_096075836.1\|29214_31116_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	4.73633e-24
NZ_CP017156.1\|WP_096075837.1\|31145_31898_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|375893	pfam18467, DUF5613, Domain of unknown function (DUF5613). This is a domain of unknown function found in bacteria.	3.34953e-38
NZ_CP017156.1\|WP_096075844.1\|37547_38876_-\|Ktr-system-potassium-transporter-B	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.3032e-91
NZ_CP017156.1\|WP_096075826.1\|13597_15217_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP017156.1\|WP_096075843.1\|36993_37509_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.4336e-12
NZ_CP017156.1\|WP_096075829.1\|17844_19065_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	3.39226e-126
NZ_CP017156.1\|WP_096075841.1\|34522_35923_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	1.88449e-117
NZ_CP017156.1\|WP_096075831.1\|20871_24042_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	8.42004e-120
NZ_CP017156.1\|WP_096075832.1\|24044_24947_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	7.91122e-92

>NZ_CP017156.1|WP_096075834.1|25268_26258_+|hypothetical-protein
MHNKWEITKESTKYKLNFSSYTSIYNVQDTKEEEIVQIIHNYFQPRSKSDETIKIYDQTNDNLIGHKDFQAYYFTNDIMMEEFGLSASTIMNKKLNRLLSEDAEVGMYLNTVNTLLEDSLLRIQDRVPVHIEPLDYKKFLKMIKFDLNIISESKMNYIEKLELIFPLLIEEIKLSSKSEPIIIYNHPETYLSPNEQKKFREILEMQNVKLIVLTESIYFLSKELKGLNIYRNNKQMISDELLEEIYWNAPLNFEEEDIKISLEKIFQSYVSKFEIKPIITNYRLGDIMLFEPVDIYVCISFLQFCKYDYEFDMRLEELPKPLTEYINTL
>NZ_CP017156.1|WP_096075833.1|24951_25260_+|CRISPR-associated-endonuclease-Cas2
MRILIMFDLPVETKAQVRVYNKFRKQLIKEGFLMLQYSIYIKTCINREAANGTINIIKKYLPKNGHIRSLIITEKQYENMIVLLGEEDKNIEILGDNRTIMF
>NZ_CP017156.1|WP_096075832.1|24044_24947_+|type-II-CRISPR-associated-endonuclease-Cas1
MAWRIVYVTDVDELSLNMNSLKVKKGDFDLKVPLSDIFAVVIEDLTVRVSTRLLVELSNYNILVVICNQKHLPECYIQPISGHYGQYSQMQNQLSWKKDDKEKLWQKIVRQKILNQAKVMEIMMAEYHRIEKLYYLGMNVEINDPRNHEAQAARIYFNSFYEDFNRDDEEIIENAALNYGYTILHSAIARTIVAKGLIPALGIRHIGVRNHFNLASDFIEPFRPIVDLFVLKNPPGPFLTKEYRLHLINIMHARIYIDGKQQTLIRAIEIMIQSIIDYFSEGDTNKLKLPNLERYQFYEL
>NZ_CP017156.1|WP_096075831.1|20871_24042_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTTEQRNFILGLDIGIASVGYGIVDSDTKEIIDAGVRLFPEGKSDENNGRRTKRGSRRLSRRRKHRLLRVKYLLEKYGFETKNMEDTNPYEIRVRGLYEKLTDRELVIALNHLSKRRGIHNVDVSDDDGSDSELSTKEQINRNNKLLKDKYICEIQLDRLKENGIIRNHTNRFKTSDYINEARKILETQSKYNEKIDENFISEYIKLIETRRTYYEGPGKGSPYGWEEDVKKWYVSMMGRCTYYPEELRSVKYSYSASLFNILNELNNLVIARDENSKLTKEEKELLIEKVFKVVKTKPSLQKIAKALDVKPEDIKGYRIDKSDKPEFSTIKIYHDIKAAVNNKEVTEDEQLLDEIAEILTIWQSEEDIIDELSKLNATLSESDILKISKLKGYTGTHALSLKLIKEINHELWETKKNHMGIISSMKLRPRNMDFKGLNKIPVDFVDEWILSPVVKRSLVQAIKVINEVFKQYGTPKDIIIELAREKNSDDKKKFIQKLQKENEKLNKEVREILNLHKRGDKGLFEKLKLWHLQDGFCMYSAQQIKIQDLITNSENYEIDHIIPRSVSYDDSMNNKVLVKLEENQKKSKQTPFQYLSSGVGEITYPEYKKHVLSLAKDKKRITKKKLGYLLEERDIKKFDVQKEFINRNLVDTRYATREIMNLLKLYFKDNNIETKVKSINGGFTYFLRGIWGFDKDRNEGYKHHAEDALIIAMADYIFENRDIFKNENLLMKNNQAVDLETGEILQEEDFKAKFFENNMYKNINAIKEYQNFKYSKRVDKKPNRELMNETIYSSRKIDGDEYIIRKIKNLYDPKNKDLKKKYLKDETTFLMYEHDKQTFENLRMIMERYKEADNPLAKYHEETGEYLRKYSKNGNGPIVKSIKYKHTKLGSHHEITYKYNKSKNKVFTLSFNPFRIDIYKENDKYKFINVRYVDIIDNGHEYAIDSKLYNERKLEKKISGNAKFIGSFFKYDLIKIDGELTSIIGVFSDAGNLLEVDLVEQSYKEFADINGLRKRKYMSIGSKHEILKYTTDILGNLYPVKNEKLKMKFPKSKGK
>NZ_CP017156.1|WP_096075830.1|19083_20241_-|hypothetical-protein
MIKEPIIATTMLFALIAIGEIISIYTRARVPMLLTAMLGFLVLSWLGVFPPKILEYSTVPALGAVLIGPLILHMGTIMPLHVLKSQWKAVIISLSGLVGATILILGIITPIYGFPTAASGLGPVAGGVIALLITNEKLTALGMSALIVVPSLVQALQGVIGMPLASHFMNQYVKQDYIHRLRNTPADLRALTDDTYAQSKISILNNNTIRLFIVFVFAAIGVWLGKVTGIHFTIFCLFFGVLLLNTKVLPQNTLEKANSLNFFIIAVIFVVIGSMGGVKPEDVMKNILPVLCILGLGALGIVLGGFVASKLLKWPIHKGMPVALTALFGFPGDYILCQEVARSHGQTDEEVESILNELVTPMLIGGFVTVTISSVIIANVVMDLI
>NZ_CP017156.1|WP_096075829.1|17844_19065_-|amidohydrolase-family-protein
MKTLINNVNILDVERGAYMNHRSVVIEDNRIISFDDTDNADIIIDGEDRYLLPGMIDSHVHMVFEFKPVESRLATPFSYNFYQAMDYAKSTIDAGITTVRDALGADIGYKKAIEDGLFIGPRTVCSINALTITGGHGDGYQYSGNSIDIVTTDYPGMPNGICDGVEEVRKKAREMLRAGADVLKVHATGGVTSPTDHPNYTQFSLEELKVIVEEAAFRNGRKVMAHAQGLEGINQCIDAGIHSIEHGIYLDEPTAKRMVEHGTYLVPTLLAPISVLEFAEELGMSQVAIDQAKEVLEDHINGFKTAYKQDVKIAMGTDAGVFKHGTNLRELELMVEYGMSEIDAIRASTQVAAECLCIDQLGLIKEGYLADLILVNQDPLENISVLKDNNSIKLVVKDGAIVKQID
>NZ_CP017156.1|WP_096075828.1|16114_17767_+|hypothetical-protein
MDWREYFTPIVLERGREYFYEDLVEVTFIDKREINTIVFGSEEYNVEIENIGTNNMTMMCDCPHAQDDNYCKHMAASMLVFEELEDTVQKTNKKKQIKIDQDALLQTLTHASEGNVKSFLFELCMKNSDIYDKFMKEIARLNEQKVVQLNKPQSLQTYKEEIRGIYKSYMRKNFIDYTDAMDMFNELESYLEDEVPKLYDNPVRAIKMLNYAVMLFGKYDIDDSAGGYTSLMNLVTDLSSDIIDEANDKQQDEIFNIYLELLKGELLYEREMIEEIFFEHFESEAQLNAKLIYLERKAAQATPDSYAQKNTLEHLIIVYEELGLSSDEIILKLKPYRHTDQVRDFLIEVEINKGHHKKAIELIKEGMQSKYPGIARMYHTRLIRYFKEIGHIDYVYELFNYVIREHWSEMESYRELKSFYTQEEWEQVRQYIFRKSNDEQLAHYFIEEKLYDRLLKGFKEGRFYYRMFLHMKEDLLSYDKEKSLHVYAQIINTLAVNAKSRKEYKGVMGYLQDMKQITGGEIIAHRIAKEWRILYKKRPAMIDELNKVMK
>NZ_CP017156.1|WP_096075827.1|15535_16099_+|AAA-family-ATPase
MSELVMRAEYINFLRRHRDKQVIKVVSGVRRSGKSTLFKLFQDELLSKGVEQSQIIAINFEDISYHHLLNYDTGLRQLVLRDHLQDYGHILENIIYLELKRRGFEVYIGENNQYEVDFVAIAPDNSIEYYQVALSTLDESTLKRELRSLASIDDQYPKYLLTLDQFNQTANYNGIQKLNALQWLMGE
>NZ_CP017156.1|WP_096075826.1|13597_15217_+|chaperonin-GroEL
MVKEIKFSEDARRSMLAGVDKLADAVKVTLGPKGRNVVLDKKFVAPLITNDGVTIAKEIELEDPYENMGAKLVAEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGIRQGIDKAVAVALEELAAISKEVSSKEEIAQVGAISAADEEIGQFISEAMEKVGNDGVITIEESKGFKTELEVVEGMQFDRGYASPYMVTDSDKMIADLENPYILITDKKISSFQDILPLLEQIVQTSRPILIVAEDIDGDALTNIVLNRLRGTFTAVAVKAPGFGDRRKAMLEDLAILTGGQVITDDLGLDLKDATVDMLGNATKVHVTKDDTTIVEGRGDASNIDARVGQLKAQIEETTSEFDKEKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVSIYNKVAAVEATGDVATGVKIVLKALEAPIRQIAINAGLEGSVIVEKIKHAETGVGYNAATDEWVNMIEAGIVDPTKVTRSALQNAASVAAMFLTTEAVVAEMPEENPAPEMGMGGMPGMM
>NZ_CP017156.1|WP_096075825.1|13256_13544_+|co-chaperone-GroES
MIKPYGNRVVIEKTEREQTTASGIVLTDSAKEKSNEGTVIAVGTGRILENGEKIDIQVAVGDRVVYEPFGGTEVKAGDEKYIVLKEEDIIAIIED
>NZ_CP017156.1|WP_096075835.1|27880_29215_+|DUF262-domain-containing-protein
MTLITNDLKILSLKDLMLSSNGEGSLTLKIPSYQRPYRWSSKSANQLFMDIYEAFNNNISEYRIGSVILHKDNDCYNIVDGQQRLTTLSILLFVINSDYKDKLSLLNEVYDDLSHAAIVRNFDILNKRVGELSLDESKRLEQYLLERCTIVQIVTDNVQEAFQFFDSQNSRGKALAPHDLLKSYHLREMKHNDEQETMDLIQQWENIDQARLSLIFEWYLYPIYQWQRNKDGIGYSSKNIDVFKGINADSTFNYAMYHKASHLYVEQFNRSGNHELFASTPITQFQLTEPIIAGRRFFEYILYYEKLLKKVAYRINDANREHPELLGNESVRGDWLTKRLYEALVLMFIDRFGEEAFTPRIENILYSWSYSIRLHMKRVSKLTINKYAQGNHHKINPGLNLFESIKEMRHPNELMEILFKQPEHHDKYEIMRKKVFEINHWELK
>NZ_CP017156.1|WP_096075836.1|29214_31116_+|DUF262-domain-containing-protein
MTNNKQNLSGNTNKNVFTKSASEIFKNMRFLIPIYQRNYAWGETQIVQLIEDIDSAVTLDTDTGEYFLGNLILNKRDMLSDEDYLYTNEVIDGQQRLTTLYLLCSYLGIAFDKEALRFEARVQSNQTLDLINEANVNNDGSILSDEILKGYEIIKNYFLVHKIVKEDFKTKLTKVKLVVIYVPQDIDLNHYFEIMNTRGEQLELHEIAKARILEQMTSSNDQTLAATISNDQTLAATIWDACSNMKRYVQMNFSSDFRKAVFDHNWDNFKGNLKCFDDLSKNNDSGNNNKQRTLIDRIKSKEDMQENKNNTTFENDGERFDSIISFPNFLLQVNAALSKENDETPSLDDKHLLLSLAWVWQKNDGESEEDRKKRSKDFLFQLLKTRIIFDRIIIKREYKGKALNEGRWSLQKMQRYGEEDYTADYVMTPNELENKQLKVLQSALRVTYTSPKAMRWITLVLKSILNENKEESDVIQILEDYCRESVRKSDYKNKRGFQIEHIVFNYLDYLLYRDGYEDEQKQVINKLSNWEFQFRNSIEHFYPQHPLNGDIWDEHDELNSFGNLALISVSGNSMFSNRIPEEKAKVEHIINQSLKLEIMAHITKKSGWSKEKIKCHCDEMITIIDNDIRKADS
>NZ_CP017156.1|WP_096075837.1|31145_31898_-|GNAT-family-N-acetyltransferase
MLSFKDTHNSADILEESARYIHYHTPSQLIKYYANYFEYKEMPTLELFKEDLSYQRDFHMKYHQQHLLFIFPDNEVIPESIVAYAKSHGCNLEMMELYELKHPKQLRRNDEVVCEVVTQDGPIFDDFLKVCATGEIEYGEDFVKLKDETHRRDLLKHNILQIVAYIDNTPAGKIEAIIEDETVEIDDFYVIETYRKRGIGSRLQEAVYDLAHGKQVFLIADGNDTARDMYQRQGYEKIAERYELLLTPHN
>NZ_CP017156.1|WP_096075838.1|32003_32543_+|hypothetical-protein
MDKKDFKRTFQYFIKNLFNFKGELPFHLYKKLMLIPQICAFIILALFMIYLFKDIFSGYPYHDLSLKEAERLEALDQFKRFSAIIFFFVFLYLSSLSTEIKRFRFLRKSPAVYLALGCIGLPLIYAYSYYSNVIMHSTSTVGILLIILIPWFANNKNKPTDRDKLYEDYDFEDIEHFNQ
>NZ_CP017156.1|WP_096075839.1|32578_33001_+|hypothetical-protein
MTKKLWLNYLIYGIIVVMLLWLLIDSGVQQEPFIFTFLIVVLIGPFFIISHETRLRQLLHRNRLAGLEQRVAQKKYEYTVLAVMLIISLLLHMYYKMNDMDTSGLFNFTVAIFGAAVGTNMRHIVDRQEIKEIKEKSMFK
>NZ_CP017156.1|WP_096075840.1|33069_33906_-|hypothetical-protein
MTNTSRNKLIIICFSLIVLITLFIIITNKTKHVVTHKANNPEQFTTSDGTQINYLIYPAKHAKGTLLWLHGDGAAEFYEPDTKYYLEGPHGIKQVAAAHQLTLIVPKTPSKDETWWTNGEHNNEYLVELIRTLPDHDNLWIGSFSGGSEEVAYWLLHDLKKAGVKRGGAVLFGGGGSPKSEGITDTLPKSDVIQESFPLTWIVGEHDDGTDKYAKGFNTLKKSKESEAFYRSQGWDTKRIVLEGYGHLISKDDEGLYGKYLDDVLNGKRDEMQSLPKK
>NZ_CP017156.1|WP_096075841.1|34522_35923_+|NAD(P)/FAD-dependent-oxidoreductase
MNNKHYDVIYIGSGHAAWHGALILNQMKKRVAIIEKDKIAGTCTNYGCNPKILLEGPFEAIESLKHYGDIVDTFPQVNWSKLMDYKRETINPMHEGLEQIFKDQGIDIIKGEGLLKDAHTVSVDGTEYHGKFIVLATGQRSHLLDIDGKELMHNSTDFMELDTFPERITFLGGGYISIEFASIAAKMGSEVSVIGHSDTVLKQYHQPYVQKLVKKLEDEGVTFHLNIDVNKLEQTDDGLKFTDDKGFELNTDYVVDATGRVPNVEGIGLEQVGVDYDKQGIKVNKFMQTSVPNIYASGDVVSKKIPKLTPTATFESNYIALNILGSDADKKKFPLKALKLLPIKYPAIPNVVYSLPRIAHVGMTIEEASKKSGYKVKTIKFGEQLEFQYKHERDAEMKVVLDGRNRLKGAVIYGSAADDLINILTLIINKKMSGREVNKMIFAFPSASSGVIQLLGMHMMGVDIDL
>NZ_CP017156.1|WP_096075842.1|36041_37004_+|hypothetical-protein
MKKILLGILIAILALGAVLDTKDYVLGNKFDETKLYGDMSDLGSYDDAVNDMENNLTEAGMDVASRSSRIYKLPNNHYYILQMFESFYRKSDYLYTGLIEINNANDTYLTYPDNKLELIEVNKKFEQNSWKVNSEAGTFDFKVGKFGDVSDDDKQMMDDDGKHGLSISLTPKEGVITVGRNGVWFDDDKRKIGMQNAMKSYATEKEAVNAVKKDDFGKLIGVMQSKQMNFYVYRNQIDIFKEYTIIPVSLKDNQYTAGKYERFTIETDSIADIKAEEQVYNVNYTLRFQQSSDKFEKIANQLKDGDMHIAVKVRGEGHAK
>NZ_CP017156.1|WP_096075843.1|36993_37509_+|DUF805-domain-containing-protein
MQNNMSMKDAVIAYWTKGFQFSGRARRREYWLNLLATLIIELVIGLLIMLIDVISSYKANLSEHYRFFVTTLFPYINTIPAMAQSSRRLQDININGKIAIVIMTVDVVLSFIFTHVYPILPIDFTDKGGLAPMLMLTLLLSLPWLFLFICNFIRGNHGPNKYGEDPKQTVY
>NZ_CP017156.1|WP_096075844.1|37547_38876_-|Ktr-system-potassium-transporter-B
MEKKNKVSTRNPYLVIISAFLVFLTIGTLLLYMPFSQKQPTSFVDCLFIATSAFTVTGLATIDITANFNYIGYIIIMILVQAGGLGIITLAMIVFIMLGKKVGFKGRSLATEALNQQNTGGIIRLVLILFSVSLIFESIGALLLCLEWIPQLGFKRGLFHSVFTAVSAFNNAGFALHSDNLVQFRTNPVINFIITSLIIIGGIGFTVILDLYKTKHFKKLRVHTKVMLFSTLIINFCATLIIFILEYGNKATLGGHSTFDQFQMAYFQAITTRTAGFNTIDIGALTTPTILIVMLLMFIGGGPTSTAGGIKLTTTVVIIFGTLSFIKQRAHLSLFKRTIDPRFLFKSLAIAVLSSGFCFTIVFCLVLAEPNLPFLPLMFEVISAFGTVGLTMGITGKLSVIGKLLIILMMMIGKVGVLTIVLTFSRPNKQLYSYPKEDILTG

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Crispr_ID: NZ_CP017156_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017156_2

74076-74183

Orphan

Consensus_repeat	Method
TGGGTAAACCCCCAATTTCGAGAGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017156_2

>merge|NZ_CP017156|2|74076-74183|CRISPRCasFinder
TGGGTAAACCCCCAATTTCGAGAGTGAAACTGATGCTGAAATTGGTAAATCCCCAATTTCGAGAGCCGAACTGATGCTGAAATGGGTAAACCCCCAATTTCAAGAGTG

>NZ_CP017156|2|2|74076-74183|CRISPRCasFinder
TGGGTAAACCCCCAATTTCGAGAGTG	AAACTGATGCTGAAATTGGTAAATCCCCAATTTCGAGAGCCGAACTGATGCTGAAA
TGGGTAAACCCCCAATTTCAAGAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017156.1\|WP_096075885.1\|76453_78835_+\|YSIRK-type-signal-peptide-containing-protein	unknown	unknown	gnl\|CDD\|380149
NZ_CP017156.1\|WP_096075879.1\|69132_69984_-\|agmatinase	unknown	unknown	gnl\|CDD\|212539
NZ_CP017156.1\|WP_096075884.1\|75226_75997_+\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
NZ_CP017156.1\|WP_096075874.1\|63893_64706_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173830
NZ_CP017156.1\|WP_096075880.1\|70841_71267_-\|S-adenosylmethionine-decarboxylase-proenzyme	unknown	unknown	gnl\|CDD\|235105
NZ_CP017156.1\|WP_096075890.1\|82648_83206_-\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NZ_CP017156.1\|WP_096075891.1\|83306_84443_+\|pectate-lyase	unknown	unknown	gnl\|CDD\|378931
NZ_CP017156.1\|WP_096075877.1\|67311_67713_-\|YolD-like-family-protein	unknown	unknown	gnl\|CDD\|370161
NZ_CP017156.1\|WP_096075888.1\|81400_81670_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NZ_CP017156.1\|WP_096075876.1\|66673_67285_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP017156.1\|WP_157742150.1\|65037_66663_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP017156.1\|WP_096075881.1\|71269_72778_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|224893
NZ_CP017156.1\|WP_096075882.1\|72985_74017_+\|lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NZ_CP017156.1\|WP_096075878.1\|67798_69040_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP017156.1\|WP_096075887.1\|80338_81301_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP017156.1\|WP_096075892.1\|84455_85499_-\|nitric-oxide-synthase-oxygenase	unknown	unknown	gnl\|CDD\|376957
NZ_CP017156.1\|WP_096075883.1\|74234_75134_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP017156.1\|WP_086043247.1\|69967_70828_-\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843
NZ_CP017156.1\|WP_096075889.1\|81688_82606_-\|manganese-dependent-inorganic-pyrophosphatase	unknown	unknown	gnl\|CDD\|235458
NZ_CP017156.1\|WP_096075886.1\|78891_80262_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143454

Protein	Function_ID	Function_description	E-value
NZ_CP017156.1\|WP_096075885.1\|76453_78835_+\|YSIRK-type-signal-peptide-containing-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	1.42092e-41
NZ_CP017156.1\|WP_096075879.1\|69132_69984_-\|agmatinase	gnl\|CDD\|212539	cd11593, Agmatinase-like_2, Agmatinase and related proteins. This family includes known and predicted bacterial and archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme that belongs to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. As compared to E. coli where two paths to putrescine exist, via decarboxylation of an amino acid, ornithine or arginine, a single path is found in Bacillus subtilis, where polyamine synthesis starts with agmatine; the speE and speB encode spermidine synthase and agmatinase, respectively. The level of agmatinase synthesis is very low, allowing strict control on the synthesis of putrescine and therefore, of all polyamines, consistent with polyamine levels in the cell. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.	6.1049e-131
NZ_CP017156.1\|WP_096075884.1\|75226_75997_+\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	6.18402e-119
NZ_CP017156.1\|WP_096075874.1\|63893_64706_+\|hypothetical-protein	gnl\|CDD\|173830	cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoterpenes, diterpenes, and sesquiterpenes, are formed from their respective linear isoprenoid diphosphates by class I terpene cyclases. The head-to-head (HH) IPPS catalyze the successive 1'-1 condensation of 2 farnesyl or 2 geranylgeranyl isoprenoid diphosphates. Cyclization of these 30- and 40-carbon linear forms are catalyzed by class II cyclases. Both the isoprenoid chain elongation reactions and the class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, stabilizing reactive carbocation intermediates. Generally, the enzymes in this family exhibit an all-trans reaction pathway, an exception, is the cis-trans terpene cyclase, trichodiene synthase. Mechanistically and structurally distinct, class II terpene cyclases and cis-IPPS are not included in this CD.	1.70543e-09
NZ_CP017156.1\|WP_096075880.1\|70841_71267_-\|S-adenosylmethionine-decarboxylase-proenzyme	gnl\|CDD\|235105	PRK03124, PRK03124, S-adenosylmethionine decarboxylase proenzyme; Provisional.	7.03104e-63
NZ_CP017156.1\|WP_096075890.1\|82648_83206_-\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	4.86203e-41
NZ_CP017156.1\|WP_096075891.1\|83306_84443_+\|pectate-lyase	gnl\|CDD\|378931	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.	6.85147e-08
NZ_CP017156.1\|WP_096075877.1\|67311_67713_-\|YolD-like-family-protein	gnl\|CDD\|370161	pfam08863, YolD, YolD-like protein. Members of this family are functionally uncharacterized. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. This family has been shown to belong to the WYL-like superfamily.	1.75367e-24
NZ_CP017156.1\|WP_096075888.1\|81400_81670_-\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	2.00995e-28
NZ_CP017156.1\|WP_096075876.1\|66673_67285_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.177e-46
NZ_CP017156.1\|WP_157742150.1\|65037_66663_+\|hypothetical-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.50602e-22
NZ_CP017156.1\|WP_096075881.1\|71269_72778_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	9.75882e-133
NZ_CP017156.1\|WP_096075882.1\|72985_74017_+\|lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	1.57741e-134
NZ_CP017156.1\|WP_096075878.1\|67798_69040_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.6451e-55
NZ_CP017156.1\|WP_096075887.1\|80338_81301_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.47516e-60
NZ_CP017156.1\|WP_096075892.1\|84455_85499_-\|nitric-oxide-synthase-oxygenase	gnl\|CDD\|376957	pfam02898, NO_synthase, Nitric oxide synthase, oxygenase domain.	7.43392e-173
NZ_CP017156.1\|WP_096075883.1\|74234_75134_-\|hypothetical-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	2.33544e-06
NZ_CP017156.1\|WP_086043247.1\|69967_70828_-\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	2.8172e-163
NZ_CP017156.1\|WP_096075889.1\|81688_82606_-\|manganese-dependent-inorganic-pyrophosphatase	gnl\|CDD\|235458	PRK05427, PRK05427, putative manganese-dependent inorganic pyrophosphatase; Provisional.	3.23578e-173
NZ_CP017156.1\|WP_096075886.1\|78891_80262_-\|aldehyde-dehydrogenase	gnl\|CDD\|143454	cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.	0

>NZ_CP017156.1|WP_096075882.1|72985_74017_+|lactonase-family-protein
MSEVKGFIGSYTKQDGKGIYSFTLDTEEKTIKTVETGYEVPGSTYIQQHGDKLYGIKKADSNAGIQSYQINGDGTLTVINDTLSSTDSACHIWITQDGKYLLEAVYGPGVVRLYKLDETTGEVLELIDIAQQEGTGPNKERQDHAHTHYIQETPDGKYAVAVDLGTDEVITFTFGNNGFKRVETLKVEPGMGPRHLIFNENGKYAYLFTELSNEVVVMKYADGKFEMLDKLSTIPSDFTENSQGAAIRLSHDGKYLYASNRGHQSIAVFKVLGDGEKIELVEIVGTGGDWPRDFNIDPSDTFLVCAHEADGVLTLFERDKETGRLTMLENDKRAPEGVCVQFL
>NZ_CP017156.1|WP_096075881.1|71269_72778_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MTQTYYSKAFHSIDKSKHTLTPLFTALKEYEEQHVTSFDVPGHKRGLDPDYKLNYYGTRTLRHDVNSMPTLDNFDHPTSVIQKSQALMADLFQAEEAHFLLNGTTSGIQAMILSTLKPKDKLLLPRNVHKSVLNAMALADVTPVYMVPEFDTEYGIAHNISVETIRKTIAAHPDAKALFIMNPTYFGAVSDLKEIVSIAHNAGIPVLVDEAHGAHYRFSEHLPLSSMEAGADMAATSLHKTGGSFTQTSVLLFNSKLIDKHKVKSIINMLTSTSASFLLMSSLDIARHHLALHGEEKINNVLSLVQSFRERINKIPGFYMLEPEKFNNKYHQQLDETKLTIYIDHRLDLSGFEVYHLLRSDYDIQMELAEPNIVMGIVSFMDNENELNQLFDALSAISAKHFNLNKPFVPPILKQMSIPMQKMGLRDVFYSETKVVQIEDALNEVCAESLMIYPPGIPILMAGEMITQEVIDYWKFINDQPIIKIGAENKNEVFIIDNKGDI
>NZ_CP017156.1|WP_096075880.1|70841_71267_-|S-adenosylmethionine-decarboxylase-proenzyme
MKLTTLGRHVLIEYYNCDKDILKDHDKVEAIMNEAARVSGATIVESCFHTFNPYGVSGAVIISESHLTIHTWPEYGYASVDVFTCGDTVDPWRAEDYLQKALKAELSDSYEIGRGMADKIHKYSKGQIVVESFKPVEVAAK
>NZ_CP017156.1|WP_086043247.1|69967_70828_-|polyamine-aminopropyltransferase
MLDLWYTENHTDNVKFSIKTTEHILTEKTPFQQIDFFKSEEFGTFFTLDGLMMVNEKDEFVYHDMITHVAMATNPNIKKVLVIGGGDGGTVRELTRYASIEQIDMVEIDERVVRLSQEYLPITAGKLEDPRVTLLFEDGLAYVKNKEDGYYDLILVDSTDPIGPGEGLFSHDFYNNCFRVLTDDGILINQHESPYYPSYAHEMKRAHSKIKGLFPITRVYQFHMPTYPSGHWLFGFASKKFDPLKDADLDAWNALGLKTKYYNTDIHTGAFALPTFVKEMLDDATE
>NZ_CP017156.1|WP_096075879.1|69132_69984_-|agmatinase
MMQPNKHVYMSCEASFEEATTVIYGAPFDGTVSNRPGTRFAADAIRSESYGLETYSTFLNKDLEDVRIMDSGDVDITIGNKVKVLEELEETARTILNAGKLPFMIGGEHLVTLGPMRAVLEKYPDTVLVQLDAHTDLRDDYMGEPLSHATVVRRIHDFIGDNRIYQYGIRSGTKEEFDWSEKHTVLEKFSIDTLKDLPDIIGNAPVYVTIDLDCLDPSIFPGTGTPEPGGLTYKELEPAFKVFEQLNVVAADIVELSPPYDHSGVSNAVAAKVARELMLSITK
>NZ_CP017156.1|WP_096075878.1|67798_69040_-|MFS-transporter
MKFKDFPSNVKLRIICGFFDHAASMSVMPFMVLYIADELGKVTSGILMSLNVIFGLLCNLVGGYFADRFSRKGQLIWGQSIFAILFTVMAIFIHPDINLAWLVAIIFMCLAIPSAMIFPALEALIIDSTDEVSRKSVYVTTYWSNNLATAVGTAIGGLFYKEHRFLLFIIIIAIMLINTFIFYKFLKDPTTEKEKVIVDMHWMRDLFGKYKVALKDTRFVLFTAAAVFIFSAEFALTNYIGVRLHEVFKPIDLFGIHIDGVRMMSLLLIENTVLVVTITFLVNKLVEPFNQRTMLVIGGLMYTFGYALTHTITVWWMLMLCILFATIGELIQSPIYSVYMAKLMPDDARASYIAFSSLGYSGAGLVASSGLIVGVVLNSVMMSVYVALLGIVGVTLIVIALNLPGKHQFKMNK
>NZ_CP017156.1|WP_096075877.1|67311_67713_-|YolD-like-family-protein
MIHPIYGETDYRKVEPEQLNRNIPKGRGMIKWAPFATMPQQFADVRRQIENQNKVERPELSEDRMQEINETLHIALAKHQDVTIEYYMDGYIQSVDMTIEKIDQWAAIIIGSVTSNHKTFFISFMDIINIYTH
>NZ_CP017156.1|WP_096075876.1|66673_67285_+|response-regulator-transcription-factor
MVKIIILDDHELFGHGVSKIIEAEDDLSVLKVFTDPNLLTHYIKTLQPNIVLCDIKIKDVNGLNIVKTYSKKYPKVKFIMLSGYNLEEYKIKAYENGAVGFILKDESTDKLVDGIRAVYYFNQNLKHDMVLAKPLLSDQEKEILRMIAKDMKNQEISEALFISKRTVEYHITKLIRKLGVESRLGAVIKGIKLGIIEESETKI
>NZ_CP017156.1|WP_157742150.1|65037_66663_+|hypothetical-protein
MLSKLFSIYPVFSRSNKLNTFLKLNNYLIFILFIIAMILNITLQRSDFVLFSFIMLITVCIILLLSVFYVIFSIIRNSHGMIRRELYFILASLLLSILPMFTLNLFLHFFDSSIPYYYLLPTLIIFPLYLLYSFCKFKIIVSESFLSIVFGLFQIWNVLMLCSMIVFYILFIEHPLLITAIIFHSLLLVGCVALYYFRNRYTVKYRAVNITNNINENIYDTLIRNNIKLSNYYLFIETQDQSEQYKFPAGTFNYDDIISKTHMIYERSTIAINQLQDITVYVHRTAVNNAFIAIHSSEAEKFKYLEFVHLLEQFEFFMKNYSTKLMDDDYKNRIYLSHAALEEERERLSLFLHDDILQNIILALNETKSLDKDGSHAHIEEILDESIYAIREACEDLFPADLDDFGLNESLNSLIRRHLYESIIDIQLDYQESNVIIDKLIKISSYRMIKELINNAIKHADAKHIKVEVVESISSLSFKVSDDGKGIPYHNVSDILVRGSNNGLKYLINQVNLFDGTVEFSVFDENAYRQGLIVSVTLPLE
>NZ_CP017156.1|WP_096075874.1|63893_64706_+|hypothetical-protein
MIDQYISDLIKKLNLSATSEEQLLIYVSNKIQRDSWGSYYETINKLFNKGTQADMQRNSVAIQLVFWAFDLVDDVVDGDHLLEWISREQQILLSHITMLQAIRLFNQKIQDDVMALIVDAGYAEFYDITYDFNENPDISEDEYIALVTQKSGNLMRLIGLIIDKDNVPLQYFMQNVGIAAQIKNDIDSILSEHKSDFYQRKMYLPLIKYIFFSGDKNLQYFSRENILQSGSLDYCRLLYNYYIEKAYSILLDAFPDKTEGIRKLKDEFNF
>NZ_CP017156.1|WP_096075883.1|74234_75134_-|hypothetical-protein
MIIKERKFDMELSYLLQLSIRAKLSYEDNEEIDTRIKGINGERSFDALVNQHLKHGLVLNNLQFNVNKQYFQIDALIIMKGQIFIFEIKNMYCDVCYKDNLFYFLNGTPIEKLNEQRIRTPKLFKILLTQNLIDLPFNYYTTFVNPDYKVYGYQVHDNILEYQDIYKIITENSKITIAKYDEYIAKKLIDLQYTDEKFNFRKRINIEDLGMGVVCHCHVAKYEKVSNRKFKCPACKKEVNCNDYLQKAIEDIHLIYPMERLTVSLVKKWTENYISSEKIRTYLNIHHKIFKNGPLTFYR
>NZ_CP017156.1|WP_096075884.1|75226_75997_+|carbon-nitrogen-family-hydrolase
MKIAIYQMEIIPGEPEKNIEKVANWLSTLDDVEIAVLPEMWNTSYTLEELVHITSDNGQREIEKLSELAKQYQINIVGGSIAVRVEDKIYNRAIVINKKGELIHQYDKLHLVPMLDEPNYLTQGNNISIFEIDNVKMGVIICYDLRFPEISRKLALEGIEVLFVVAEWPIERISQFEKLLYARAIENQVYVIASNSIGKCNNTVFGGKSMVINPLGEATTKIILGEGTIQATVNIEEIRNIRTKIPLLKTRRADIY
>NZ_CP017156.1|WP_096075885.1|76453_78835_+|YSIRK-type-signal-peptide-containing-protein
MKKSNKSKLDFLPNRLNKFSIRKFSSVGTASILIGSLVFTGSQANAATDDTATTEAATTEAAASEVPVEDTGNHKIAGRIFDDLLGANGEANNSLRDENESLVLATPEELAVFKVELRDEAGNIVAEKSLDATGYYEFTGLKNGTYNVTFKNPLTWSPVIANVDFDASDDRDSDGPTDVRVVINNNDSLHVDQGYKKGAGHSVDDLPGTVEPPTTEAPPTTEAPPTEKPDTGKYSLGDKVWEDKLEEDTKAPNNVQDADEKGIEGIKVTLHDYAGNFVGETYTDANGQYRFDNLPNGTYRVDFDTPLGWSPVIANLGDEVIDSDGPVAVLADINGKDNLDVDQGYVNNGGGGVVTPIPTPDPGRPEPTPEPTPDPVIPEGKYSIGDKVWWDDQDKEGNLDNLQDPNEAPVKDLKVTIRDEAGNLIGTTYTDANGHYQFDNLPNGTYIVNFHNPLDWSPVIANLEADLHDVIDSDGPTDVRVVINGASNFDVDQGYVLKTGSPVIVPPGGGGEVTPPVTPPGGGEVTPPTKLPLPPEVCSVVSIGEGTAGNLSIGNKVWWDANRNNMQDAGENPVVGLRVTLRDYSGNTIGETYTNAWGEYAFHGLAEGTYIVNFHNPLDWSPVIANIEADLHDEVDSDGPIDVIVNLKDKSNADVDQGYYGTGEAGPNCDTGITPPGDNGGGDKDPGTKPGDNGGGDKDPGTKPGDNGGGDKDPGTKPGDNGGGDDKTPVTPPADGGQVPDVKDSEKATVTPDSNNLPDTGEVNNAAIATGAAALLAGGALIAASRKRRDEEI
>NZ_CP017156.1|WP_096075886.1|78891_80262_-|aldehyde-dehydrogenase
MNIHEDIKKMKDYFATHETKQIKIRRKKLKALKKAIKAHETDIIDALNSDLGKGKVEAYATEIGIVLKELSTYIKEIKNWSKVKSINTPMMQFPGKSYLMYEPYGTVLIIGPFNYPFQLVMSPLIGAIAAGNCVVVKPSEHTPQTSIVIEQILEEVFEPEYVKVIQGEKEVTSALLDVRFDYIFFTGSTKVGQIVYEKASKHLTPVTLELGGKSPTIIDDTANIKVAAERIAFGKFMNAGQTCIAPDYVLIDNKVKEKFLKAMQSTLNEFYGKNALESEDYGHIINDQHFNRLTAMIDEAHERILIGGTSKADVLHIAPTLIDARLNDLSMQEEIFGPILPIIGYNNKEEIFETIQQYEKPLALYIFSDDQDFIRDVFTRVSFGGGCVNDTIMHVANPYLPFGGVGHSGMGHYHGKYTFELFSHQKAYMTKSTKLESGIMFPPYKGKFRYVKQIFK
>NZ_CP017156.1|WP_096075887.1|80338_81301_+|Gfo/Idh/MocA-family-oxidoreductase
MKFGLIGTNWITDRFIEAGKTVPEFELHSVFSRTIERAQSFAEKYDIPSFTDNMDKLLNDEAVDIIYIATPNILHHQQAIQAMNHGKHVLCEKPIATSEKNFNLMYQAMENNDVFFMEAMKSIYSPSFIKLHEWIKEIGTIRRANFHYNQYSSRYDKYKDGIVENAFKPELGNGALMDLGVYTISPLVNLFGMPKTIQATGKLLSTGADGQGTIICNHHYMTSVLSYSKIIDSHLPSEIIGEEGIILIDKISAPNKVQKLNRHGEVIDEIVSDAPPMSYEIAHFIEAIKNKDFNALNLETSHHTMKVIDEVKKQIGILIK
>NZ_CP017156.1|WP_096075888.1|81400_81670_-|N-acetyltransferase
MEIIQGNNKFYIGDEAQPEAEITFQPSGQDTIAIDHTYTDPSLRGQGIAKALVLKVTDYAKENNLKIIPLCSYARIVMERDDSLKQLIK
>NZ_CP017156.1|WP_096075889.1|81688_82606_-|manganese-dependent-inorganic-pyrophosphatase
MKILTFGHKNPDTDTVTSALVMEDLQKALGKDIEAVRLGDLNGETEFALKHFSVNAPRVIERLHGEDVILVDHNEFQQSADGIEDANILMVVDHHRIANFETAGPLYYRAEPVGCTATILNKMYKEHGVEIKPEIAGLMLSAIISDSLLFKSPTCTDEDVKAAEELAAIANIDIQSYGLDMLKAGAKTADKTAEELLNIDAKSFSMGEHEVRVAQVNTVDIDEVLSRQEELENAINAETAQEGYALFVLVVTDILNSNSKVLALGQQQAAVEKAFNVVLDKNTAVLEGVVSRKKQVVPQLTDVLS
>NZ_CP017156.1|WP_096075890.1|82648_83206_-|cysteine-hydrolase
MSEALLIIDYSNDFVALDGKLTCGEPAIALEDTMVKKWNDYKDNNKPIFVLMDLHFENDTYHPETKLFPPHNIKDTDGRNLYGKLHELYLRDKDDNNVFWIDKMRYSAFSGTPLLQLLRERNIKEIELTGVCTDICVLHTAVEGYNLGFEMSVDERAVASFNPEGHHYTLQHFKHVLGMTVDEIN
>NZ_CP017156.1|WP_096075891.1|83306_84443_+|pectate-lyase
MKKINIKDFGAKGRHVLFDTIGLQRALNHAKKEPVEVYVPEGTYYIGKELVIYAHTYLHLHPDAVLRRMSPFAMLKNGRKSEGYKGYDGNGYIKIEGGTFDQYGHVLNFNNSIMSLGHAREIEIKDITFKNVVQGHAIDACGIDGFKVSGCKFLGFRDDSGERAFSEAIQLDLQLKDSFPKFGEYDGTVTKNVIIENCYFGNSNEPMMKPWNRAIGSHASTYEIYYENITVKNNTFDKMGDYALTFLKSKVLHVYDNTFNDCNGGIRYLATKKGKYSLDLYGNDHGAQAGEMTVIRNNHFHSINDKYAILFLSYDGKKNKDIYIIDNQFSEDNMCTIKIGAAKNVVCMQNKNLKQIKKIEVDDFYAETIAKDESVGEL
>NZ_CP017156.1|WP_096075892.1|84455_85499_-|nitric-oxide-synthase-oxygenase
MLFEKAKLFIKQMGNELNIDEDATNERLLSIQQEIERTGSYIHTTEELTYGARLAWRNSNRCIGRLIWDKLNVVDMRHVADEKDYLTALETHIARATNNGKIIPTITIFNQQSKINFELLNDQLIRYADDPIVSDTKKLIEHTGYKSFGKFLPLLYRYDNEYKTYDIHHDLIKEVRIEHPDFPKFNALNLHWYAVPIISGMDLSIGGITYPLCPFNGWYMESEIASRNFLDDYRYNLLEPIARSMDLDTSRTTSYWRDKVVVELNYAVYHSFKQQGYSIVDHYNASRQFLKFEENETANNRKVTGDWTWLIPPISPSLVHNWHKGYDNTYQETNFYYKMKKAACPFH

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Crispr_ID: NZ_CP017156_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017156_3

2323445-2323626

Orphan

Consensus_repeat	Method
GATGAAGTCGAAGATGAATTAGA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP017156_3

>merge|NZ_CP017156|3|2323445-2323626|CRISPRCasFinder
GATGAAGTCGAAGATGAATTAGACATTGTTGTTAGTGAAGATGACGAAGAAAACGTTGACGCTGAAGATGAAGAAGTCGAAGATGAATTAGAAGAAGCAGGTTTAGTAGTTGAAGCCGATGAATTCGATGACGAAGACGATCAATTCGAAGATGAAGAGGAAGAAGACGAAGAAGAATAATA

>NZ_CP017156|3|3|2323445-2323626|CRISPRCasFinder
GATGAAGTCGAAGATGAATTAGA	CATTGTTGTTAGTGAAGATGACGAAGAAAAC
GTTGACGCTGAAGATGAAGAAGT	CGAAGATGAATTAGAAGAAGCAGGTTTAGTAGTTGAAGCC
GATGAATTCGATGACGAAGACGA	TCAATTCGAAGATGAAGAG
GAAGAAGACGAAGAAGAATAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017156.1\|WP_096077997.1\|2327553_2328411_+\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|181501
NZ_CP017156.1\|WP_096078000.1\|2330456_2331434_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP017156.1\|WP_096077995.1\|2326554_2327049_-\|DUF2529-domain-containing-protein	unknown	unknown	gnl\|CDD\|378487
NZ_CP017156.1\|WP_096078149.1\|2313258_2314239_-\|cysteine-synthase-family-protein	unknown	unknown	gnl\|CDD\|107204
NZ_CP017156.1\|WP_096077985.1\|2315592_2316267_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP017156.1\|WP_096077999.1\|2329977_2330307_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP017156.1\|WP_096077998.1\|2328597_2329857_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|183779
NZ_CP017156.1\|WP_096077996.1\|2327114_2327462_+\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP017156.1\|WP_096077991.1\|2322205_2323021_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP017156.1\|WP_096077983.1\|2314355_2314778_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP017156.1\|WP_096077990.1\|2321236_2322049_-\|type-II-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237346
NZ_CP017156.1\|WP_096078002.1\|2333032_2333287_+\|type-B-50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234969
NZ_CP017156.1\|WP_096078001.1\|2331599_2332916_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP017156.1\|WP_096077994.1\|2325473_2326367_+\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP017156.1\|WP_096077986.1\|2316263_2317901_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP017156.1\|WP_096077987.1\|2318112_2319297_+\|M20-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349921
NZ_CP017156.1\|WP_096077993.1\|2323760_2325359_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP017156.1\|WP_096077988.1\|2319286_2320465_+\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|223516
NZ_CP017156.1\|WP_096077989.1\|2320629_2321247_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017156.1\|WP_096077984.1\|2314885_2315473_+\|GrpB-family-protein	unknown	unknown	gnl\|CDD\|377252

Protein	Function_ID	Function_description	E-value
NZ_CP017156.1\|WP_096077997.1\|2327553_2328411_+\|fructose-bisphosphate-aldolase	gnl\|CDD\|181501	PRK08610, PRK08610, fructose-bisphosphate aldolase; Reviewed.	0
NZ_CP017156.1\|WP_096078000.1\|2330456_2331434_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP017156.1\|WP_096077995.1\|2326554_2327049_-\|DUF2529-domain-containing-protein	gnl\|CDD\|378487	pfam10740, DUF2529, Domain of unknown function (DUF2529). This domain is conserved in the Bacillales. The function is not known, but given this domains relationship to the SIS domain it may carry out a sugar isomerase reaction. Several members are annotated as being YWJG, a protein expressed downstream of pyrG, a gene encoding for cytidine triphosphate synthetase.	2.83878e-62
NZ_CP017156.1\|WP_096078149.1\|2313258_2314239_-\|cysteine-synthase-family-protein	gnl\|CDD\|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	2.18987e-111
NZ_CP017156.1\|WP_096077985.1\|2315592_2316267_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.6849e-62
NZ_CP017156.1\|WP_096077999.1\|2329977_2330307_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.12256e-24
NZ_CP017156.1\|WP_096077998.1\|2328597_2329857_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|183779	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed.	0
NZ_CP017156.1\|WP_096077991.1\|2322205_2323021_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.76215e-11
NZ_CP017156.1\|WP_096077983.1\|2314355_2314778_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.14918e-13
NZ_CP017156.1\|WP_096077990.1\|2321236_2322049_-\|type-II-pantothenate-kinase	gnl\|CDD\|237346	PRK13317, PRK13317, pantothenate kinase; Provisional.	4.27118e-124
NZ_CP017156.1\|WP_096078002.1\|2333032_2333287_+\|type-B-50S-ribosomal-protein-L31	gnl\|CDD\|234969	PRK01678, rpmE2, type B 50S ribosomal protein L31.	3.57462e-51
NZ_CP017156.1\|WP_096078001.1\|2331599_2332916_+\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP017156.1\|WP_096077994.1\|2325473_2326367_+\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	1.76184e-10
NZ_CP017156.1\|WP_096077986.1\|2316263_2317901_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.36062e-45
NZ_CP017156.1\|WP_096077987.1\|2318112_2319297_+\|M20-family-metallopeptidase	gnl\|CDD\|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	4.95797e-159
NZ_CP017156.1\|WP_096077993.1\|2323760_2325359_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP017156.1\|WP_096077988.1\|2319286_2320465_+\|ATP-grasp-domain-containing-protein	gnl\|CDD\|223516	COG0439, AccC, Biotin carboxylase [Lipid metabolism].	4.47874e-06
NZ_CP017156.1\|WP_096077996.1\|2327114_2327462_+\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	5.41051e-27
NZ_CP017156.1\|WP_096077984.1\|2314885_2315473_+\|GrpB-family-protein	gnl\|CDD\|377252	pfam04229, GrpB, GrpB protein. This family has been suggested to belong to the nucleotidyltransferase superfamily. It occurs at the C-terminus of dephospho-CoA kinase (CoaE) in a number of cases, where it plays a role in the proper folding of the enzyme.	9.48756e-39

>NZ_CP017156.1|WP_096077991.1|2322205_2323021_+|GNAT-family-N-acetyltransferase
MEFIGSQIKIVQYKEEYRPQLEAFELTDRQEIYSSLPLEVLDEGLFDPNRRPCVVLNHDEQVVGFFVLHQHYQHEGYDTPVNAVYVRSLSINNKLQGQGYGTEIMMNIPEFAQSVFPNFDHLFLVVDAENQGAWNLYERAGFMHLATNPNGPIGKERLYYLDLDANYVSKLRLVQDGDNIKLLKDEKEVGTVDLEVDGDIATLKAMDITEDVDVIHENVLRQIATFVRKHFKDVIRIEVEVPENLRDVYLNNNFVPMDAEHPHHLTKLIRY
>NZ_CP017156.1|WP_096077990.1|2321236_2322049_-|type-II-pantothenate-kinase
MKIGIDAGGTLIKIAILENGKFTFRKQLSTELEEVAEWLKTLPDAQVALTGGKATYLQSLIPQNAFQSIEFDATFRGIQSFLTAMNLDISKFVFSNVGTGTSIHFVDGDTQIRAGGTGAGGGMMMGLSYLLTGIDNYEELISLAKEGDRDIIDLKVKHIYKGDKTPIPGELTAANFGNVLLNKDTENFTDADKIASVLGIVGETVTTVSIHAAREFGAEYVVYIGSSFLNNTLLRDIVMNYTVLRNFKPYFIENGEYSGAVGTLRLMDEN
>NZ_CP017156.1|WP_096077989.1|2320629_2321247_-|hypothetical-protein
MKIKSPQHKTIESIHDKTITLTRDDYGMHYSNCTILFDSDLREIDDIIFIKCTFTSDIYNIHLTDVTIDSCMMQNMTFEDVSFRRVYIKDTLMTGFTLNNVHLKDVHFYQTKMNLFNIADNIFDHVHFDTIDGHDGYLYHIETKKWAITQSQLNGLSIVETSLNTIDLSESDIDGISVQANDLKGCSVNSIQSTALIQLFGIKVK
>NZ_CP017156.1|WP_096077988.1|2319286_2320465_+|ATP-grasp-domain-containing-protein
MGTKPINLPLVMKDLYGEKVMYSSRPSYTFNPWLQPEEHQSNLLSARELLIAEMPVVVHEATVTDKTEALFNAVGFDMPNSFRVYNTRESYEQVLREAVADGEKIFFQYAHEEELVPGDKYVVPRDKFLALNNKSILDKWTKGKFLPKRDVVAIEEFENTVRKWSLPFVIKPGDEHPTAGGYGVMLCYTQEDVERSIKRVREAEGTEQMIIEQFIEPVHNYCVQYAYSEELGIKFIGSSQQITEKYGKYRGNIINHDIPQNVIDAGMEIMQNGVEAGYVGIAGFDLLVDSQGAIYAIDLNFRQNGSSSLLLLDSVLSGDYKKFLAYYSAGDNAKFFDVILNEVKAGYLFPLAYYNGDYKEKDGFPSRFICIWHGDEDVVESRVKAFEARLKE
>NZ_CP017156.1|WP_096077987.1|2318112_2319297_+|M20-family-metallopeptidase
MNNKVLQYIDENRDKFIRISHEIHARPELGNEEYFASNLLSKTLKDAGFSIERDIAGHETGFIASYESEKAGPTIAYLAEYDALPGLGHACGHNIIGTSSVLSAIALKEVIDDLGGVIQVFGTPAEEGGVNGSAKASYVKAGLFNDSDVALMIHPGHESFRTVPTLAVDVFEVEFFGKTAHASENAHNGINALDAMISFFNGIGQLRQHIKKTDKVHGVILDGGKSANIIPDYTKARFYTRAISRKDLDVLTGKVDRVAQGASITAGAEYQLNHIQNGVNEFIRNTFLDDLFEKHAIMHNEPILHDDFGFGSTDTGNVSHIIPTIHPHIKMGSSSLIGHTVEFREAAKSAHGDHALLQGAKIMATMAIELIEKPEELQRIKHLHETLKENIYGD
>NZ_CP017156.1|WP_096077986.1|2316263_2317901_+|HAMP-domain-containing-histidine-kinase
MSISKKFMIRFIRYFLIFYFSVTLIICAFFLYFLVTSEQSFFEEDMQSVDSYAISEYIKFDGDKVKPVKEMVNYIKQHNGILVVRDKGGKVIYSSDKDFKLQPLNTYRAEAFTTWELPKGQQVIYLENKVLNEARRKLETDSKEAQRYLEQHDLALFVADKKGLTKISGQFDEDVVNSTLFKHKNNDNYQKYFFVSYFKDNKNYYVVQKNQHPADTKAIFAEDSYMYDKDFMNDIKNFLIWYAWINLVVLAAILLFSIFLGNRLAQPLKHFSTWVEQLAKGDYSVLNDERIYKNGRLRRKYRMYSPIDGAIAKLTGKLADDKNYQSNMNIQREKWVRGITHDLKTPLSSIYGYAKILNSGMPLEPDEQKKFIGIIEDKALYIDQLLKDLNMVYQLKSDGIQFHTEETCLRTYIDAFVSQYGNKGLNYIHKEDATIHIDTSRMDRVLTNIVSNSFTHNVNVEVWISTYTNGNNAIIEIADNGQGIPQEDLTHIFEQFYRGNRTNEHHNGSGLGLSVAKEIVELHDGTIDVVSSVAGTKFLITLPTY
>NZ_CP017156.1|WP_096077985.1|2315592_2316267_+|response-regulator-transcription-factor
MPSILIVEDELEIAELIKFILVREGFGKVDIASTFAQAKLMISTHYDTYLLDINLGDGSGYDLGNEIREMTDAPILYVSANTQDRDKIKGFQNGADDYITKPFNPMELAVRVKVNVERYMKSGKKEKALYSFDERNAELTVRDKKYLLSGKQYLLMQYLYEHQDEICTKEQIYEAVWENQFVDDNTVMVHIRKLREKLEVEPSKPKLLLTSRGIGYILKSGEDK
>NZ_CP017156.1|WP_096077984.1|2314885_2315473_+|GrpB-family-protein
MRYNSTITKFESWWHMKKIVVLPYDSIWQHLFLDESRKLKNSIKEHADNILHIGSTAVPGMSAKPIIDMMIVTKSLQLFETQHLALINLGYERITPAFKDSLQYVNRVSGDRTHQLYIFPSGHEKILEMTAFTSYLKYYPSEMERYNSVKIELAKMYPFEVHAYEQSKLIFVTVMTVKALDWYSDRTSHEDVSII
>NZ_CP017156.1|WP_096077983.1|2314355_2314778_-|class-I-SAM-dependent-methyltransferase
MSLPFMDIFKNWASEYDNFVTGQDPEYKDVFVNYDFMIAQAVKHAQGDVVEFGPGTGNLTNYLLQQGLNVRAIEPSEEMAAIGEKKTGITFERGDFLNFKQQPADTFISSFAFHHLTDTEKDIAVGNMQHYLMMVAASSF
>NZ_CP017156.1|WP_096078149.1|2313258_2314239_-|cysteine-synthase-family-protein
MEVIASRNGFDYHDTQLNRFAHLQILEKKTIKKPFDLIGHTPIVEITAFPLNEGNRIFAKLENHNLGGSVKDRLGLNIITKALERGDIKTGQVVEATAGNTGIGLALICQKYDLKLRVYVPEKFSVEKQSIMRALGAEIINTPTDKGMLFAREEALKYAQETGAFFTNQFESPDNPSSYEGLANEIIADVGRVDMIVAGAGSGGTFTGLAHYFKDAHKVIVEPQGSILNGGESGSHRTEGIGVEKWPGFLPKDLIDAVETISDIDAFTKVSELAKLEGLMQGSSSGAALQAALNQQQHFTHQNIVVIFPDASDRYLSQAIFNIKGE
>NZ_CP017156.1|WP_096077993.1|2323760_2325359_+|CTP-synthase
MTKFIFVTGGVVSSLGKGITAASLGRLLKNRGLNVTIQKFDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNQYSNVTAGRVYSHVLKKERRGDYLGGTVQVIPHITNEIKSRLLLAGESTKADVVITEIGGTTGDIESLPFIESIRQIKSDLGRENVMYIHCTLLPYIKAAGEMKTKPTQHSVKELRGLGIQPDMIVVRTEYEMTEDLRDKIALFCDIDKKSVIECRDADTLYQIPVALQAQDMDDLVIERLGLEASGEADLTEWNQLLDTVRNLEGKVKIALVGKYVALQDAYLSVAEALKHAGYAFGKDIEIDWINSEHLDVTNYKERLQDADGILVPGGFGERGIEGKILATQYARENDIPFFGICLGMQLATVEFARNVVGLKGAHSAELDPNTPYPVIALLPDQKDVVDLGGTLRLGLYPCEVQEGTKAFEAYGTGHVDERHRHRYEFNNEYRERLEEKGLVFSGLSPDGRLVEIVEIPDHKWFVACQFHPEFLSRPMKPQSLFRGFVEAAINK
>NZ_CP017156.1|WP_096077994.1|2325473_2326367_+|NERD-domain-containing-protein
MFLKLHEPDNKMRYLMNVDGRCNLTKDDRTALFAYKIGFAGENYFYEQLQAVEGGLKLWDITLKESSKAQFDFLIIGDGKIFHFDTKNYSGEYTYIDGIFKNNRGRVDQTIISQLKRADLILPQFLMRNGFQYEHVSRIIFVNENFVLRNFNGDQYVKFAGQIPGIIDYLKKLGPPTDEDYRLAKVLISADVVDNHRFAYYDYTQMKKGYRCPKCKRFGYVEVASRKKYVACRCGRRLSKLDYITEAARQVSILKNEPFQIKEIAEWSNCEIKTVQRALLNSCMFKGKNKGRVYWFQ
>NZ_CP017156.1|WP_096077995.1|2326554_2327049_-|DUF2529-domain-containing-protein
MLKIFNTQLNGIFKKIDMQEAELDIAGRLLAQAVVGEGKIYIKGFGDLKFFEEFAANSKESLFDAAVYISDALVDGTDRILVMSDAYDESTAEFVDSLEARDIDYVLVCNKHEDIRSMNFIDLSTPRALVPTEDFSRIITPHMMAMNYIYYAIYSVMHEMLVEE
>NZ_CP017156.1|WP_096077996.1|2327114_2327462_+|response-regulator
MKILVIDDEPNIRLLFQEIFKLKGYDTEIAENGKIGLEMLKENYYDLIFLDRKMPVMSGDETLEQLRKFSDVPVYLVSAFQTDEEIQSIKQTGATGVLMKPFTIDEVVKIAEKFS
>NZ_CP017156.1|WP_096077997.1|2327553_2328411_+|fructose-bisphosphate-aldolase
MPLVSMKEMLIKAKEGGYAVGQYNLNNLEFTQAILGASQEENAPVILGVSEGAAKYMGGFYTVVKMVEGLMKDMEITVPVAIHLDHGSSFENCKAAIDAGFTSVMIDASHHSFEENVEITSKVVEYAHAKGVSVEAELGRVGGQEDDVVSDGVVYADAKECQELVEKTGIDCLAPALGSVHGPYKGEPNLGFKEMEEIGKATGLPLVLHGGTGIPTKDIERSISLGTAKINVNTENQIASAKAVRDTLNNDANVYDPRKYLGPAREAIKATVIGKIKEFGTSNKA
>NZ_CP017156.1|WP_096077998.1|2328597_2329857_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MSEEVIKIRGGNPLKGSVQISGAKNSAVALIPATLMASNPVTLEGLPEISDVVTLMSLLEDLNITTTLDGDRLTVDPSNAVNMPLPNHKVQSLRASYYMMGAMLGKFKKCVIGLPGGCPLGPRPIDQHIKGFEALGATVTNEAGGMYLEAKELKGAKIFLDVVSVGATINIMLAASMAKGKTVIENAAKEPEIVDVATLLNNMGAKIRGAGTDTLKIEGVESLHGTSHTIIPDRIEAGTYMCAAAMMGEEVLIENIIPLHMEPLTAKLIEMGVDVQIGEDKALISKPEKYNPVTITTNVYPGFATDLQQPFTPLLFMAEGQSTITDTIYPARFKHVDELSRMNGDITESGGTAIIKPSQLSGAEVAASDLRAGACLVIAGLAAEGITTVYNVKHIDRGYSGIVEKLKALGADIWREEIQ
>NZ_CP017156.1|WP_096077999.1|2329977_2330307_+|helix-turn-helix-transcriptional-regulator
MEVCPYLEETFKILGRSWNGLLINYLSRSDDRSAHFSDMKRDLKSITPRALSLKLSELAEWGLVEKKVVSTTPLSIKYVLTDKGYALSEAMHPIETWAQEHLELDEKQA
>NZ_CP017156.1|WP_096078000.1|2330456_2331434_+|class-II-fructose-bisphosphatase
MERSLSMELVRVTEAAALKSARWVGKGLKNEADDAATTAMREVFDTIPMDGVVVIGEGEMDEAPMLYIGEELGTKEGPQIDIAVDPLEGTTLVAEGSWNAMTVLAVGDRGTLLHAPDMYMEKIAVGPDCVGVVDISKSVTENLQAVAKAKGKDISDVTATLLNRERHAGIIKEIREAGARIKLIEHGDVAGAINTAFDFTGVDILFGSGGAPEGVIAAVGIKALGGDFQGILLPEDVEQEERCRKMGIEPNTVLQLDDMVKGDDAIFAATAVTDGELMKGVQFKGGYAETHSLVMRAKSGTVRFVQGRHSLEKKPGLVINQEDTI
>NZ_CP017156.1|WP_096078001.1|2331599_2332916_+|transcription-termination-factor-Rho
MVEKVRTSPQYESFHELYKNHTTKALTAKAKELGLVNYSKLNKKELVLAIMEKQMEKDGNYYMEGILDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKKGDKVTGKVRKPKENEKYYGLLQVDFVNDQNAEEVKKRPHFQALTPLYPDTRIRLETTKTAYSTRIMDLVTPIGFGQRGMIVAPPKAGKTSLLKEIANAICVNHPEAKLFILLVGERPEEVTDLERSVEAAEVVHSTFDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVVPPSGRTLSGGLDPASLHRPKAFFGAARNIEAGGSLTILSTALVETGSRMDDMIYEEFKGTGNMELTLDRKLAEKRVYPAIDIRRSSTRKEELLLDKKELEMVWQLRNLFTDSNDFTERFLRRLKQSESNEDFFKQLGERMVESAKSGKPII
>NZ_CP017156.1|WP_096078002.1|2333032_2333287_+|type-B-50S-ribosomal-protein-L31
MKPGIHPDYQKVIFLDSTTDFKFLSGSTRKSKETMTWEDGNEYPVIRLDISSDSHPFYTGRQKFASADGRVERFNKKFGLKSNN

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Crispr_ID: NZ_CP017156_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017156_4

2358671-2358767

Orphan

Consensus_repeat	Method
AAGTGTCGTCAAACCAGATCTGAAGCCACTTCCGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017156_4

>merge|NZ_CP017156|4|2358671-2358767|CRISPRCasFinder
AAGTGTCGTCAAACCAGATCTGAAGCCACTTCCGTCCACCATAAACGCAAAACCCTTGAGTAAGTGTCGTCAAACCAGATCTGAAGCCACTTCCGTC

>NZ_CP017156|4|4|2358671-2358767|CRISPRCasFinder
AAGTGTCGTCAAACCAGATCTGAAGCCACTTCCGTC	CACCATAAACGCAAAACCCTTGAGT
AAGTGTCGTCAAACCAGATCTGAAGCCACTTCCGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017156.1\|WP_096078023.1\|2351161_2351596_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379494
NZ_CP017156.1\|WP_157742256.1\|2351804_2352545_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NZ_CP017156.1\|WP_096078036.1\|2364053_2365391_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
NZ_CP017156.1\|WP_096078041.1\|2369937_2370276_+\|holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_CP017156.1\|WP_096078029.1\|2356230_2357016_+\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
NZ_CP017156.1\|WP_096078027.1\|2354766_2355444_+\|thiaminase-II	unknown	unknown	gnl\|CDD\|381695
NZ_CP017156.1\|WP_096078039.1\|2367967_2369473_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225962
NZ_CP017156.1\|WP_096078030.1\|2357019_2357661_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_CP017156.1\|WP_096078033.1\|2359666_2361142_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|211988
NZ_CP017156.1\|WP_096078040.1\|2369465_2369945_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225937
NZ_CP017156.1\|WP_096078031.1\|2357740_2358601_+\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|235040
NZ_CP017156.1\|WP_096078034.1\|2361598_2362807_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|274033
NZ_CP017156.1\|WP_096078025.1\|2352775_2353621_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|381607
NZ_CP017156.1\|WP_096078022.1\|2350671_2351109_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP017156.1\|WP_157742257.1\|2367501_2367981_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225937
NZ_CP017156.1\|WP_096078035.1\|2362977_2364048_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234993
NZ_CP017156.1\|WP_096078032.1\|2358774_2359401_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_CP017156.1\|WP_096078028.1\|2355436_2356234_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP017156.1\|WP_096078037.1\|2365656_2367174_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP017156.1\|WP_096078026.1\|2353942_2354506_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|381607

Protein	Function_ID	Function_description	E-value
NZ_CP017156.1\|WP_096078023.1\|2351161_2351596_-\|hypothetical-protein	gnl\|CDD\|379494	pfam14183, YwpF, YwpF-like protein. The YwpF-like protein family includes the B. subtilis YwpF protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 167 amino acids in length. There is a conserved IIN sequence motif.	1.10834e-49
NZ_CP017156.1\|WP_157742256.1\|2351804_2352545_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	2.53361e-26
NZ_CP017156.1\|WP_096078036.1\|2364053_2365391_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	6.12155e-152
NZ_CP017156.1\|WP_096078041.1\|2369937_2370276_+\|holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.3877e-43
NZ_CP017156.1\|WP_096078029.1\|2356230_2357016_+\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	7.17647e-113
NZ_CP017156.1\|WP_096078027.1\|2354766_2355444_+\|thiaminase-II	gnl\|CDD\|381695	cd19360, TenA_C_SaTenA-like, TenA_C proteins similar to Staphylococcus aureus TenA (SaTenA). This family of TenA proteins belongs to the TenA_C class as it has a conserved active site Cys residue; the double Glu residues identified in the active site of TenA_E from the archaeon Pyrococcus furiosus is conserved in this family. TenA_C proteins (EC 3.5.99.2) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway. This family includes Staphylococcus aureus TenA (SaTenA) which plays two essential roles in thiamin metabolism: in the deamination of aminopyrimidine to HMP, and in hydrolyzing thiamin into HMP and 5-(2-hydroxyethyl)4-methylthiazole (THZ). It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect. SaTenA is then also a putative transcriptional regulator controlling the secretion of extracellular proteases such as subtilisin-type proteases in bacteria. This family includes mostly uncharacterized TenA like proteins.	1.50122e-97
NZ_CP017156.1\|WP_096078039.1\|2367967_2369473_+\|PH-domain-containing-protein	gnl\|CDD\|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	4.92488e-75
NZ_CP017156.1\|WP_096078030.1\|2357019_2357661_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	1.75405e-78
NZ_CP017156.1\|WP_096078033.1\|2359666_2361142_-\|cardiolipin-synthase	gnl\|CDD\|211988	TIGR04265, bac_cardiolipin, cardiolipin synthase. This model is based on experimentally characterized bacterial cardiolipin synthases (cls) from E. coli, Staphylococcus aureus (two), and Bacillus pseudofirmus OF4. This model describes just one of several homologous but non-orthologous forms of cls. The cutoff score is set arbitrarily high to avoid false-positives. Note that there are two enzymatic activites called cardiolipin synthase. This model represents type 1, which does not rely on a CDP-linked donor, but instead does a reversible transfer of a phosphatidyl group from one phosphatidylglycerol molecule to another.	0
NZ_CP017156.1\|WP_096078040.1\|2369465_2369945_+\|PH-domain-containing-protein	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	8.04801e-17
NZ_CP017156.1\|WP_096078031.1\|2357740_2358601_+\|membrane-protein-insertase-YidC	gnl\|CDD\|235040	PRK02463, PRK02463, OxaA-like protein precursor; Provisional.	2.22591e-76
NZ_CP017156.1\|WP_096078034.1\|2361598_2362807_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	7.51777e-100
NZ_CP017156.1\|WP_096078025.1\|2352775_2353621_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	2.76133e-18
NZ_CP017156.1\|WP_096078022.1\|2350671_2351109_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	2.3716e-85
NZ_CP017156.1\|WP_157742257.1\|2367501_2367981_+\|PH-domain-containing-protein	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	1.05467e-15
NZ_CP017156.1\|WP_096078035.1\|2362977_2364048_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	0
NZ_CP017156.1\|WP_096078032.1\|2358774_2359401_-\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.53716e-38
NZ_CP017156.1\|WP_096078028.1\|2355436_2356234_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	5.46641e-127
NZ_CP017156.1\|WP_096078037.1\|2365656_2367174_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	3.31892e-155
NZ_CP017156.1\|WP_096078026.1\|2353942_2354506_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	3.31412e-31

>NZ_CP017156.1|WP_096078031.1|2357740_2358601_+|membrane-protein-insertase-YidC
MKKKAIWPLIIAIALFLAGCDYSKEENRTGFFYDTFVHPLDQLIHWLGANMGHNYGLAIIAITLIVRLALFPFMMRTYKNQYVMKEKMALIKPQMTEIQERVKRARTQEEKMAANQEMMALYKDNGINPLNMGCLPLLIQLPIVTGLFYVLKYPTSGGITKYPDFLWFELTKADITMTVIAGIVYAIQAFVSMQNIPEEQKAQMRMMMFISPIMIVWMSAISPAALPLYWAVGGAFLVVQTWLGNKFYKKKVHEEIAPLVAAHEQNQAEDKPKNVQVVSSKKKKKK
>NZ_CP017156.1|WP_096078030.1|2357019_2357661_+|thiamine-phosphate-synthase
MFDRKLLRVYFIAGTQDTSDGNLERVLQEALEAGITLYQFREKGQNALTGEAKETLARKLFEMCKVKGVPFIVNDDIALAKKIGADGIHLGQDDEKIENIIDDFNDKIIGLSVGNFAEYDQSDLTHVDYIGVGPVYETSSKSDAKKPGGIELIRKMRLYDEDIPIVAIGGITDANSEMILAAGADGISTISSITKSDDIKQVVTDYLKYYTDK
>NZ_CP017156.1|WP_096078029.1|2356230_2357016_+|hydroxyethylthiazole-kinase
MMILEQLRKDNPLIICITNDVVKNFTANGLLALGASPAMATEKLEMDEFLTHAGALLINIGSIEEGDIENMLAAAKYANQHDVPIVLDPVACGASKLRKDFCLKLLETYEITVIRGNASELQALTGEARMKGTDADTSLSTEDVARAAYNRFNCAIVVTGEIDAICVNGKINLIENGTALLTKVTGGGCLLGAVVASFIYNETKPTLETLTEALTTYTVASEFAERASNGTLPGHFAVNLIDQLYLIQESDVAENRLVKEV
>NZ_CP017156.1|WP_096078028.1|2355436_2356234_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MNNMKTALSIAGTDPTGGAGTTVDLKVFQSRGVYGMSVVTSIVAQNTLGVQQVFNQNVDVIAAQLDSVYSDIIPDAVKTGMLATSEVMDVVRPYIVKHDIPYVIDPVMVAKSGDALLDENGRSAVRTKLLDVATVVTPNIPELEEIVQMKVETLDDIKRAGKIFINEIGSDSVLIKGGHLKGDATDYLFTRDDFVVLKGERYDTKHTHGTGCTYSAVITSELAKGKSIVEAVQLAKRYMDIAIRFTPELGHGQGPVNHFKFQEME
>NZ_CP017156.1|WP_096078027.1|2354766_2355444_+|thiaminase-II
MMFTQQLKEEVEPIIESIYNDPFIQGMVRGDLSKEAVIHYLKADHLYLNEFAKIYSLLIPKLDDKEGIKFLLEQIDFVLNGEVTAHYTLADYAQVDYKTIIKDGEWYPTSDHYIKHMYFNAYRYSDAAFTICAMAPCPYVYQQVALKMKERHDFTGNPFKDWVDFYAKEMKPLMDHLDSWVDEFAEHASEAERAILTKNFKESCIHEKRFFNMAYIQETWESVVE
>NZ_CP017156.1|WP_096078026.1|2353942_2354506_+|LysM-peptidoglycan-binding-domain-containing-protein
MKKILSVTAAIAITTTMAVSTADAASYKIKSGDSLWSIANKYGTSIAAIRSANGLRSNLIHPNQVLKINGKNNSVVYKNTSYKKSTYKAPVSKTAYTSSKTVKTTNSTYINRGLNWAALAQCESGGNPSINTGNGFYGMYQFDLQTWRGVGGYGYPHQASAAEQTKRAQILYNMRGAQPWPVCGLRL
>NZ_CP017156.1|WP_096078025.1|2352775_2353621_+|LysM-peptidoglycan-binding-domain-containing-protein
MKKLAAITTMAILTTGVATTQADAKEHKVAQGESLWTIADKYDTTIEKIKNINKLKSEVIVPNQKLEVLVKGKYEVKAGDTLGKIAHKFDVRITELKKWNKIESSKELNEGQLLIVEKKSDRKHTNAAPIKAAPVAKKVAAPVSAPVATQNTAATVQPQPQAQPVQQTQKAVRVQQAPVQQAPVQQAPVQQTKRAAVQQTSAPAGNSSVDAHLRLIMQRESGGNPRAVNAAGYYGLFQFSPQTWAAVGGTGNPAQASEAEQWKRARMLYTQHGAQHWSTAY
>NZ_CP017156.1|WP_157742256.1|2351804_2352545_+|single-stranded-DNA-binding-protein
MINKVILAGRISSDIDLKNFSDKLQIASFFLAVDRGKKKGAKESTVDFLRCKAFNRTATNIHSFCKKGSLICVTGQIHNNRYERDGQTRYSTEIVIESIKFLPSFGGNNKEKTPDETWDELSYDEKLIVINGYRAVKKETTDHKKEAVSNVTPGQQEHEPVTTYNQRWSTKLNKDEKMSAEIQEQAEEIVQKFSGESSINHKEATLDNNDEVVEPTSQSNNTIDNEANDAQTEMTDDEITDQQIPF
>NZ_CP017156.1|WP_096078023.1|2351161_2351596_-|hypothetical-protein
MKTFKAVRFQIVENESVTEYALHDGVIINKENSGTGWLLEIVIDDIHLEKMQYYLENETMLDTRVVITRASNDPALFESTVKQIIPLKDKISVIIECHIYTLRQVYAEKLLEQLVVDGLSGQELLIAFNRMMKSKPKLKDEIEE
>NZ_CP017156.1|WP_096078022.1|2350671_2351109_+|3-hydroxyacyl-ACP-dehydratase-FabZ
METLLTFDEIKKIIPHRYPFLLIDRIIELEDGKKCTGIKQVSGNEPFFQGHFPDYAVMPGVLIVEALAQVGAVAMLKLEENQGKLAMFTGIDKCRFKKQVTPGDTLQLEVEMTRVKGPLGKGVAKATVNGEIACSCEISFAILEK
>NZ_CP017156.1|WP_096078032.1|2358774_2359401_-|HD-domain-containing-protein
MINKEVLHITESFVKNVHQGESSGHDFAHIERVRKMAVIIAEKEGANLFIVEMAALLHDTVDEKLFDTKAAWERLNKFYEEIYLPIEAQQAINHILKYMSFNGGKNEGKLKSLEGKVVQDADRLDALGAIGIARTFMFAGKFGEAMYDPNIPVRDDLSDYRTPSTAINHFYEKLFKLIDLMNTETARAMAEERNEYMKAFIEQFKKEW
>NZ_CP017156.1|WP_096078033.1|2359666_2361142_-|cardiolipin-synthase
MSVFSNIDYSQVFSILFFVAFVFNIFLAFVIIFLERRQAGSTWAWLLVLFFLPIIGFILYLLFGRQIKQSSIFKLDEEDKLGLQQIVHEQRHAIDEDDLMVRSKEIMKHKDIIRMNLNNYSSFLTTDNAVEILTDGRKKFDALIQDILNAKDHIHIQYYIFKKDGIGKEILDALMQKLKEGVEVKMLYDDIGSRTLTLSRFKNFKKLGGQVEAFFPSHFPLINFRMNNRNHRKIVVIDGKIGYVGGFNVGDEYLGLDKRFGYWRDTHLRVEGDSVNALQLRFMMDWNSQSTRNFMHYDKKYFPDVDSKGEIGIQIASSGPDSSEQHIKFGYLKMITSAKESIFIQSPYFIPDTSLLDALKIAALTGVEVNIMIPNKPDHPFVYWATYSNVGELIHAGCNIFIYENGFIHTKMMVIDDEVASVGTANMDFRSFELNFEVNAFIYDHDIAYKLRKTFEDDVKVSSQLTKEIYDQRVLLIRVKEAIARLISPIL
>NZ_CP017156.1|WP_096078034.1|2361598_2362807_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MAQSSNTSRIKIKRPWIEKIDWWLIILILCFFTVSLTVITSAMDGQQYGTNFAERQVFYYILGFILAFSIMLIKPKLINKWVFVLYFLGNLALLGLLILPESSLTPTINGAKSWYVFFGRLSLQPSEFMKIILILALSKVVYDHNRFTYYKSFQTDIILLMKIGITAIIPMILILLQNDLGTTLVLLAIILGITVVSGVTWRILAPFLIGLTTIGATLILAIIYKPELIDKVLGIKTYQLGRINSWLNPAQYSDGEGFHLMESLKAIGSGGLFGKGFKGGEVYIPENHTDFIFSVIGEEFGFIGTVVVLVLFLALFTHLIRMAQVSTNQFASIFLAGLISMIIFHVFQNIGMTIQVVPITGIPLPFISYGGSALWALMCGIGVALSIFYHSDAEQIKKYKQV
>NZ_CP017156.1|WP_096078035.1|2362977_2364048_+|D-alanine--D-alanine-ligase
MSKQNICIVYGGKSAEHEVSILTAQSVINAMDKATYAVDTIYITNEGEWIKGPQITERIEDSETLRLSSTNEDSIMHLLTASTEGKSYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAASSMDKLVMKQLFANRGLPQLPYVSFLRSEYETYKHNILELVNNKLEYPVFVKPANLGSSVGISKCTNREELIQGIEEALQFDRKLVVEQGVVAREIEVAVIGNDNPKTTLPGEVVKDVDFYDYKSKYKDGKVQLEIPADIPSEIQETMRNMAVEAFKATDCSGLVRADFFLTEDNTIYINETNAMPGFTQFSMYPLLWQNMGMSYSELITELINLAKERHADKKKIKYKMD
>NZ_CP017156.1|WP_096078036.1|2364053_2365391_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MIKRNLQWIAEQTNGTVKGYHDVMIDGVSIDSRHINEDVLFIPFKGEHVDGHQYVAQAIESGAAAALWQSDAPNMPVGLPLVVVDDTLSALQAIGKAYLEEVNPKVIAITGSNGKTSTKDMVEIVLAPNFKVKKTQGNYNNEIGLPITLCQLDEDTEISILEMGMSGFGEIAFLSNLVQPDIAAITNIGESHMRDLGSRAGIAQAKFEITEGLKGPLFYDGDEPLLNELVDNTDGHYKSIGFNQVNDFYIHDLQASERSIAFKVGEAQFSIPTLGAHNARNATIAIAIGRLLGLSDAVINDNLGHLHLTNMRMEQIIGQNKTRLINDAYNASPTSMRASIDTLSIMDVPTKIIVFSDVLELGPDSKMYHEAVGAYFENKSIDHLFTVGTEAKYIHDKAQDFTNAMHFETKEALEEALIPYLNPETVILFKASRGMALETIINHLI
>NZ_CP017156.1|WP_096078037.1|2365656_2367174_+|DEAD/DEAH-box-helicase
MQKFRDLGISEPTINALEKLGFTEPTPIQTDSIPHTMAGRDVLGQAQTGTGKTGAFGIPLIEKVRGQEGIKSLILAPTRELAVQVAEQLKAFSRGQGIQVATVFGGMPIDRQIRELKKKPQIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKEQRQTMLFSATMPRAIQELVQKFMKDPIIVKTMTNVDSNPDIDEHYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQIEKSKNRTMTALRPPTPGEVMKARELDVKTKVKGWVEKNTEARIESIAQELINEHGDVKLVASLLQELIKSNNDVDVQLTFEKPLGRKGGSGKSYGRGRGGNSGRSGGSRSRSKDGGKDNRRKSFDRAGKAGASKGGKKPFKARTFADHKK
>NZ_CP017156.1|WP_157742257.1|2367501_2367981_+|PH-domain-containing-protein
MYFELLPHAQPANTAKYRRIKWSIYTLLTLAICTGLYFGINWLYEWRYTYLIFLLMLLPIYILSLGIFLSYKYTRYQLNQATLEMSSGAFFMSRKIVPLDLMQSVKIEQGFIMKKFNLAVVTVYTRGDMVVLPYMETKEAEALAERIIARIKEIHYGLN
>NZ_CP017156.1|WP_096078039.1|2367967_2369473_+|PH-domain-containing-protein
MDSTKKSLHYSTYLSNLLKSLKSNIFPIGFGLFLTIKDGFSKEALLDNGFAILILLFTLLSAIFSMIEAKITKYWIEDDKLMLQKGIINRTVKEIYIGKIQTMDTSAGIANQLLGGVIMHIKTAGDGIELNSIGKNDAKALSDYINQRKFHLQQGAVVQDILIENHEEEDVIKYDEKSYETIYQLSFTDLIMMSSTSASMFTVIAVVGAIYSQVNDIFNLDSYLDKLEGIVGESYMMVGIIILMALLFSYIIGIFITALKYHQYTVKFDGELINIKYGLFERKNKYIAVKNIQKVTEKQSYLRKLLNKTSFVVTTTSEMKGSEDSILGDEEVLPFISRDEAYQLIQRLVPKYRFDEVNKVIPKRSIRRYFQVSWIIFLVAGGIIQYYWFEYTWLIVILLMVLTLITAIIKYKNSGYIILDDQINVRNGGAFVMQTSFIKEENIIGINVSSTPFMNRADLRSVGLSISSGSNSIQCSLDYIEQVDAANIYDWFLLKERRQYE
>NZ_CP017156.1|WP_096078040.1|2369465_2369945_+|PH-domain-containing-protein
MNKMHRDSLKLMKIGACLTASVFLIVLAVLWFVKFKGFIPVHPYVFIGIGVIGLIIFILDFFIFPKLTYETSLFRLGEEEITTLNGIWNKEKLIVPYVTIQNVEMEQGLIMKRFNIKSLKIITAENDMEIPYVHEHEADTLKTYIHQKMNNIDVRRSHD
>NZ_CP017156.1|WP_096078041.1|2369937_2370276_+|holo-[acyl-carrier-protein]-synthase
MIKGIGTDIIELERIRKSLENKKMIGRILHPKEIELYDSFESEKRKVEFFAGRFCVKEAYSKALGTGIGQLRFNQICCLNDDSGKPYIEGSDAHVSIAHSETVATAFVVIEE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017156_3	3.3\|2323585\|19\|NZ_CP017156\|CRISPRCasFinder	2323585-2323603	19	NZ_CP017156.1	1095269-1095287	2	0.895

1. spacer 3.3|2323585|19|NZ_CP017156|CRISPRCasFinder matches to position: 1095269-1095287, mismatch: 2, identity: 0.895

tcaattcgaagatgaagag	CRISPR spacer
tcaattagaagatgaaaag	Protospacer
****** *********.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	MK448703	Streptococcus phage Javan207, complete genome	24719-24747	4	0.862
NZ_CP017156_1	1.1\|26320\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26320-26349	30	MK448703	Streptococcus phage Javan207, complete genome	24719-24748	5	0.833
NZ_CP017156_1	1.1\|26320\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26320-26349	30	NC_021539	Listeria phage LP-030-2, complete genome	3515-3544	5	0.833
NZ_CP017156_1	1.5\|26584\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26584-26613	30	MK448703	Streptococcus phage Javan207, complete genome	24719-24748	5	0.833
NZ_CP017156_1	1.5\|26584\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26584-26613	30	NC_021539	Listeria phage LP-030-2, complete genome	3515-3544	5	0.833
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	CP011103	Listeria phage LWP01, complete genome	25838-25866	5	0.828
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	NC_021539	Listeria phage LP-030-2, complete genome	3515-3543	5	0.828
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	35552-35580	5	0.828
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	NZ_CP031279	Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence	6329-6357	5	0.828
NZ_CP017156_1	1.1\|26320\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26320-26349	30	CP011103	Listeria phage LWP01, complete genome	25838-25867	6	0.8
NZ_CP017156_1	1.1\|26320\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26320-26349	30	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	35551-35580	6	0.8
NZ_CP017156_1	1.1\|26320\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26320-26349	30	NZ_CP031279	Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence	6328-6357	6	0.8
NZ_CP017156_1	1.1\|26320\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26320-26349	30	MK504445	Lactobacillus phage ATCCB, complete genome	57394-57423	6	0.8
NZ_CP017156_1	1.5\|26584\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26584-26613	30	CP011103	Listeria phage LWP01, complete genome	25838-25867	6	0.8
NZ_CP017156_1	1.5\|26584\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26584-26613	30	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	35551-35580	6	0.8
NZ_CP017156_1	1.5\|26584\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26584-26613	30	NZ_CP031279	Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence	6328-6357	6	0.8
NZ_CP017156_1	1.5\|26584\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26584-26613	30	MK504445	Lactobacillus phage ATCCB, complete genome	57394-57423	6	0.8
NZ_CP017156_1	1.6\|26650\|29\|NZ_CP017156\|CRISPRCasFinder,CRT	26650-26678	29	MN693874	Marine virus AFVG_250M17, complete genome	38495-38523	6	0.793
NZ_CP017156_1	1.8\|26781\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26781-26810	30	CP045836	Lysinibacillus pakistanensis strain LZH-9 plasmid unnamed, complete sequence	10081-10110	6	0.8
NZ_CP017156_1	1.8\|26781\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26781-26810	30	CP045836	Lysinibacillus pakistanensis strain LZH-9 plasmid unnamed, complete sequence	43501-43530	6	0.8
NZ_CP017156_1	1.8\|26781\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26781-26810	30	NZ_CP040811	Escherichia fergusonii strain EFCF056 plasmid pEF06, complete sequence	10415-10444	6	0.8
NZ_CP017156_1	1.8\|26781\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26781-26810	30	NZ_CP040811	Escherichia fergusonii strain EFCF056 plasmid pEF06, complete sequence	43853-43882	6	0.8
NZ_CP017156_1	1.10\|26914\|30\|NZ_CP017156\|CRISPRCasFinder,CRT,PILER-CR	26914-26943	30	NC_019334	Pseudomonas syringae plasmid pPT14-32, complete sequence	11113-11142	6	0.8
NZ_CP017156_1	1.11\|26980\|30\|NZ_CP017156\|CRISPRCasFinder,CRT,PILER-CR	26980-27009	30	NC_013356	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1001, complete sequence	12080-12109	6	0.8
NZ_CP017156_1	1.19\|27508\|30\|NZ_CP017156\|CRT	27508-27537	30	NC_024355	Staphylococcus phage 6ec, complete genome	6014-6043	6	0.8
NZ_CP017156_1	1.19\|27508\|30\|NZ_CP017156\|CRT	27508-27537	30	KF929199	Staphylococcus phage vB_SepS_SEP9, complete genome	438-467	6	0.8
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	NZ_CP043613	Lactobacillus buchneri strain MGB0786 plasmid unnamed1, complete sequence	15135-15163	6	0.793
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	NC_004902	Xanthomonas phage Xp10, complete genome	4984-5012	6	0.793
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	AY299121	Xanthomonas oryzae bacteriophage Xp10 genomic DNA, complete genome	4984-5012	6	0.793
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	MK504445	Lactobacillus phage ATCCB, complete genome	57395-57423	6	0.793
NZ_CP017156_1	1.22\|27311\|28\|NZ_CP017156\|PILER-CR	27311-27338	28	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	531090-531117	6	0.786
NZ_CP017156_1	1.23\|27377\|28\|NZ_CP017156\|PILER-CR	27377-27404	28	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	531090-531117	6	0.786
NZ_CP017156_3	3.1\|2323468\|31\|NZ_CP017156\|CRISPRCasFinder	2323468-2323498	31	NZ_CP024012	Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence	118282-118312	6	0.806
NZ_CP017156_1	1.2\|26386\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26386-26415	30	NZ_CP039921	Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626d, complete sequence	4145-4174	7	0.767
NZ_CP017156_1	1.4\|26518\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26518-26547	30	NZ_LR214999	Mycoplasma conjunctivae strain NCTC10147 plasmid 3	43520-43549	7	0.767
NZ_CP017156_1	1.4\|26518\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26518-26547	30	LR214965	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11	33112-33141	7	0.767
NZ_CP017156_1	1.4\|26518\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26518-26547	30	MN693244	Marine virus AFVG_25M166, complete genome	13404-13433	7	0.767
NZ_CP017156_1	1.4\|26518\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26518-26547	30	MN693579	Marine virus AFVG_25M167, complete genome	20676-20705	7	0.767
NZ_CP017156_1	1.4\|26518\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26518-26547	30	NZ_KT897276	Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence	117800-117829	7	0.767
NZ_CP017156_1	1.4\|26518\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26518-26547	30	NZ_KT897277	Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence	117800-117829	7	0.767
NZ_CP017156_1	1.8\|26781\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26781-26810	30	MK562504	Enterobacteria phage CHB7, complete genome	85730-85759	7	0.767
NZ_CP017156_1	1.8\|26781\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26781-26810	30	NZ_CP024336	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp41, complete sequence	36220-36249	7	0.767
NZ_CP017156_1	1.8\|26781\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26781-26810	30	NZ_CP024340	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-5	4940-4969	7	0.767
NZ_CP017156_1	1.12\|27046\|30\|NZ_CP017156\|CRISPRCasFinder,CRT,PILER-CR	27046-27075	30	MG592429	Vibrio phage 1.047.O._10N.286.55.F2, partial genome	13540-13569	7	0.767
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	MK448463	Streptococcus satellite phage Javan382, complete genome	7847-7875	7	0.759
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	MK448460	Streptococcus satellite phage Javan376, complete genome	7847-7875	7	0.759
NZ_CP017156_3	3.1\|2323468\|31\|NZ_CP017156\|CRISPRCasFinder	2323468-2323498	31	MN694044	Marine virus AFVG_250M514, complete genome	7925-7955	7	0.774
NZ_CP017156_1	1.1\|26320\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26320-26349	30	MK448463	Streptococcus satellite phage Javan382, complete genome	7847-7876	8	0.733
NZ_CP017156_1	1.1\|26320\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26320-26349	30	MK448460	Streptococcus satellite phage Javan376, complete genome	7847-7876	8	0.733
NZ_CP017156_1	1.4\|26518\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26518-26547	30	NC_014023	Bacillus megaterium QM B1551 plasmid pBM700, complete sequence	73521-73550	8	0.733
NZ_CP017156_1	1.4\|26518\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26518-26547	30	NC_014025	Bacillus megaterium QM B1551 plasmid pBM500, complete sequence	20286-20315	8	0.733
NZ_CP017156_1	1.4\|26518\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26518-26547	30	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	5761-5790	8	0.733
NZ_CP017156_1	1.5\|26584\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26584-26613	30	MK448463	Streptococcus satellite phage Javan382, complete genome	7847-7876	8	0.733
NZ_CP017156_1	1.5\|26584\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26584-26613	30	MK448460	Streptococcus satellite phage Javan376, complete genome	7847-7876	8	0.733
NZ_CP017156_1	1.7\|26715\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26715-26744	30	NZ_CP040830	Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence	33864-33893	8	0.733
NZ_CP017156_1	1.9\|26847\|31\|NZ_CP017156\|CRISPRCasFinder,CRT,PILER-CR	26847-26877	31	MF417867	Uncultured Caudovirales phage clone 3F_7, partial genome	52450-52480	8	0.742
NZ_CP017156_1	1.10\|26914\|30\|NZ_CP017156\|CRISPRCasFinder,CRT,PILER-CR	26914-26943	30	KX822733	Pseudoalteromonas phage PH357, complete genome	96221-96250	8	0.733
NZ_CP017156_1	1.16\|27310\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	27310-27339	30	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	531090-531119	8	0.733
NZ_CP017156_1	1.17\|27376\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	27376-27405	30	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	531090-531119	8	0.733
NZ_CP017156_1	1.20\|26585\|29\|NZ_CP017156\|PILER-CR	26585-26613	29	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	221811-221839	8	0.724
NZ_CP017156_1	1.21\|26651\|28\|NZ_CP017156\|PILER-CR	26651-26678	28	MN693874	Marine virus AFVG_250M17, complete genome	38496-38523	8	0.714
NZ_CP017156_3	3.1\|2323468\|31\|NZ_CP017156\|CRISPRCasFinder	2323468-2323498	31	MT939487	Erwinia phage pEa_SNUABM_47, complete genome	131851-131881	8	0.742
NZ_CP017156_1	1.1\|26320\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26320-26349	30	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	221810-221839	9	0.7
NZ_CP017156_1	1.5\|26584\|30\|NZ_CP017156\|CRISPRCasFinder,CRT	26584-26613	30	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	221810-221839	9	0.7

1. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to MK448703 (Streptococcus phage Javan207, complete genome) position: , mismatch: 4, identity: 0.862

aaccacatcaccagccattgcaatcactg	CRISPR spacer
aacctcatcaccagccattgcaataacac	Protospacer
**** ******************* **

2. spacer 1.1|26320|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MK448703 (Streptococcus phage Javan207, complete genome) position: , mismatch: 5, identity: 0.833

taaccacatcaccagccattgcaatcactg	CRISPR spacer
gaacctcatcaccagccattgcaataacac	Protospacer
 **** ******************* **

3. spacer 1.1|26320|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 5, identity: 0.833

taaccacatcaccagccattgcaatcactg	CRISPR spacer
taatttcatcaccagccatcgcaatgactg	Protospacer
***.. *************.***** ****

4. spacer 1.5|26584|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MK448703 (Streptococcus phage Javan207, complete genome) position: , mismatch: 5, identity: 0.833

taaccacatcaccagccattgcaatcactg	CRISPR spacer
gaacctcatcaccagccattgcaataacac	Protospacer
 **** ******************* **

5. spacer 1.5|26584|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 5, identity: 0.833

taaccacatcaccagccattgcaatcactg	CRISPR spacer
taatttcatcaccagccatcgcaatgactg	Protospacer
***.. *************.***** ****

6. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to CP011103 (Listeria phage LWP01, complete genome) position: , mismatch: 5, identity: 0.828

aaccacatcaccagccattgcaatcactg	CRISPR spacer
gattacatcacctgccattgcaatcaccg	Protospacer
.*..******** **************.*

7. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 5, identity: 0.828

aaccacatcaccagccattgcaatcactg	CRISPR spacer
aatttcatcaccagccatcgcaatgactg	Protospacer
**.. *************.***** ****

8. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 5, identity: 0.828

aaccacatcaccagccattgcaatcactg	CRISPR spacer
aacttcatcaccagccattgcaataatgg	Protospacer
***. ******************* *. *

9. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to NZ_CP031279 (Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.828

aaccacatcaccagccattgcaatcactg	CRISPR spacer
aactttatcgcctgccattgcaatcactg	Protospacer
***. .***.** ****************

10. spacer 1.1|26320|30|NZ_CP017156|CRISPRCasFinder,CRT matches to CP011103 (Listeria phage LWP01, complete genome) position: , mismatch: 6, identity: 0.8

taaccacatcaccagccattgcaatcactg	CRISPR spacer
cgattacatcacctgccattgcaatcaccg	Protospacer
..*..******** **************.*

11. spacer 1.1|26320|30|NZ_CP017156|CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 6, identity: 0.8

taaccacatcaccagccattgcaatcactg	CRISPR spacer
gaacttcatcaccagccattgcaataatgg	Protospacer
 ***. ******************* *. *

12. spacer 1.1|26320|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP031279 (Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

taaccacatcaccagccattgcaatcactg	CRISPR spacer
caactttatcgcctgccattgcaatcactg	Protospacer
.***. .***.** ****************

13. spacer 1.1|26320|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MK504445 (Lactobacillus phage ATCCB, complete genome) position: , mismatch: 6, identity: 0.8

taaccacatcaccagccattgcaatcactg	CRISPR spacer
ttacctcatcaccagccattgcgattggtg	Protospacer
* *** ****************.**.. **

14. spacer 1.5|26584|30|NZ_CP017156|CRISPRCasFinder,CRT matches to CP011103 (Listeria phage LWP01, complete genome) position: , mismatch: 6, identity: 0.8

taaccacatcaccagccattgcaatcactg	CRISPR spacer
cgattacatcacctgccattgcaatcaccg	Protospacer
..*..******** **************.*

15. spacer 1.5|26584|30|NZ_CP017156|CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 6, identity: 0.8

taaccacatcaccagccattgcaatcactg	CRISPR spacer
gaacttcatcaccagccattgcaataatgg	Protospacer
 ***. ******************* *. *

16. spacer 1.5|26584|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP031279 (Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

taaccacatcaccagccattgcaatcactg	CRISPR spacer
caactttatcgcctgccattgcaatcactg	Protospacer
.***. .***.** ****************

17. spacer 1.5|26584|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MK504445 (Lactobacillus phage ATCCB, complete genome) position: , mismatch: 6, identity: 0.8

taaccacatcaccagccattgcaatcactg	CRISPR spacer
ttacctcatcaccagccattgcgattggtg	Protospacer
* *** ****************.**.. **

18. spacer 1.6|26650|29|NZ_CP017156|CRISPRCasFinder,CRT matches to MN693874 (Marine virus AFVG_250M17, complete genome) position: , mismatch: 6, identity: 0.793

--tctgcttttgtatggttgcctattttttc	CRISPR spacer
atcttggttt--tatggttgcctattttttg	Protospacer
  ..** ***  ******************

19. spacer 1.8|26781|30|NZ_CP017156|CRISPRCasFinder,CRT matches to CP045836 (Lysinibacillus pakistanensis strain LZH-9 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

tcatggcatttaaaccaccaattgcagcat	CRISPR spacer
agatagcatctaaaccaccaattgcatctt	Protospacer
  **.****.**************** * *

20. spacer 1.8|26781|30|NZ_CP017156|CRISPRCasFinder,CRT matches to CP045836 (Lysinibacillus pakistanensis strain LZH-9 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

tcatggcatttaaaccaccaattgcagcat	CRISPR spacer
agatagcatctaaaccaccaattgcatctt	Protospacer
  **.****.**************** * *

21. spacer 1.8|26781|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP040811 (Escherichia fergusonii strain EFCF056 plasmid pEF06, complete sequence) position: , mismatch: 6, identity: 0.8

tcatggcatttaaaccaccaattgcagcat	CRISPR spacer
agatagcatctaaaccaccaattgcatctt	Protospacer
  **.****.**************** * *

22. spacer 1.8|26781|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP040811 (Escherichia fergusonii strain EFCF056 plasmid pEF06, complete sequence) position: , mismatch: 6, identity: 0.8

tcatggcatttaaaccaccaattgcagcat	CRISPR spacer
agatagcatctaaaccaccaattgcatctt	Protospacer
  **.****.**************** * *

23. spacer 1.10|26914|30|NZ_CP017156|CRISPRCasFinder,CRT,PILER-CR matches to NC_019334 (Pseudomonas syringae plasmid pPT14-32, complete sequence) position: , mismatch: 6, identity: 0.8

-gacaatcacagttaaagcgaaagatgcagc	CRISPR spacer
tggcgg-cacagtgaaagcaaaagatgcagc	Protospacer
 *.*.. ****** *****.***********

24. spacer 1.11|26980|30|NZ_CP017156|CRISPRCasFinder,CRT,PILER-CR matches to NC_013356 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1001, complete sequence) position: , mismatch: 6, identity: 0.8

ttactgatatggcttcaaacgctgtagcag	CRISPR spacer
gtgcagttattgctgcaaacgctgtagcag	Protospacer
 *.* * *** *** ***************

25. spacer 1.19|27508|30|NZ_CP017156|CRT matches to NC_024355 (Staphylococcus phage 6ec, complete genome) position: , mismatch: 6, identity: 0.8

aactgcaagttcaccatattaaaccacgtg	CRISPR spacer
atttacaagtacaccatatcaaaccacgtt	Protospacer
* .*.***** ********.*********

26. spacer 1.19|27508|30|NZ_CP017156|CRT matches to KF929199 (Staphylococcus phage vB_SepS_SEP9, complete genome) position: , mismatch: 6, identity: 0.8

aactgcaagttcaccatattaaaccacgtg	CRISPR spacer
atttacaagtacaccatatcaaaccacgtt	Protospacer
* .*.***** ********.*********

27. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to NZ_CP043613 (Lactobacillus buchneri strain MGB0786 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

aaccacatcaccagccattgcaatcactg	CRISPR spacer
aatcgtatcaccagccattgcaatgacac	Protospacer
**.*..****************** **

28. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to NC_004902 (Xanthomonas phage Xp10, complete genome) position: , mismatch: 6, identity: 0.793

aaccacatcaccagccattgcaatcactg	CRISPR spacer
aatctgatcaccagccattgcaatgacac	Protospacer
**.*  ****************** **

29. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to AY299121 (Xanthomonas oryzae bacteriophage Xp10 genomic DNA, complete genome) position: , mismatch: 6, identity: 0.793

aaccacatcaccagccattgcaatcactg	CRISPR spacer
aatctgatcaccagccattgcaatgacac	Protospacer
**.*  ****************** **

30. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to MK504445 (Lactobacillus phage ATCCB, complete genome) position: , mismatch: 6, identity: 0.793

aaccacatcaccagccattgcaatcactg	CRISPR spacer
tacctcatcaccagccattgcgattggtg	Protospacer
 *** ****************.**.. **

31. spacer 1.22|27311|28|NZ_CP017156|PILER-CR matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

gtgtcccaaatcatctcgtgctgaaatg	CRISPR spacer
taatcccaaatcatatcgtgatgaaaag	Protospacer
  .*********** ***** ***** *

32. spacer 1.23|27377|28|NZ_CP017156|PILER-CR matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

gtgtcccaaatcatctcgtgctgaaatg	CRISPR spacer
taatcccaaatcatatcgtgatgaaaag	Protospacer
  .*********** ***** ***** *

33. spacer 3.1|2323468|31|NZ_CP017156|CRISPRCasFinder matches to NZ_CP024012 (Acinetobacter sp. LoGeW2-3 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

cattgt-tgttagtgaagatgacgaagaaaac	CRISPR spacer
-attacgtgttagtgaagaagaggaagaaacc	Protospacer
 ***.. ************ ** ******* *

34. spacer 1.2|26386|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP039921 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626d, complete sequence) position: , mismatch: 7, identity: 0.767

gaagtttacctgtcaaattatttcctgatg	CRISPR spacer
cacgttttcctgtcaaatgatttccttaca	Protospacer
 * **** ********** ******* *..

35. spacer 1.4|26518|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_LR214999 (Mycoplasma conjunctivae strain NCTC10147 plasmid 3) position: , mismatch: 7, identity: 0.767

tatttttattaggtgtaattttaatagatt	CRISPR spacer
catctttattaggtgtaaatttaatttgat	Protospacer
.**.************** ******  . *

36. spacer 1.4|26518|30|NZ_CP017156|CRISPRCasFinder,CRT matches to LR214965 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 11) position: , mismatch: 7, identity: 0.767

tatttttattaggtgtaattttaatagatt	CRISPR spacer
catctttattaggtgtaaatttaatttgat	Protospacer
.**.************** ******  . *

37. spacer 1.4|26518|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MN693244 (Marine virus AFVG_25M166, complete genome) position: , mismatch: 7, identity: 0.767

tatttttattaggtgtaattttaatagatt	CRISPR spacer
cagcattattaggtggaattttaagagatg	Protospacer
.* . ********** ******** ****

38. spacer 1.4|26518|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MN693579 (Marine virus AFVG_25M167, complete genome) position: , mismatch: 7, identity: 0.767

tatttttattaggtgtaattttaatagatt	CRISPR spacer
cagcattattaggtggaattttaagagatg	Protospacer
.* . ********** ******** ****

39. spacer 1.4|26518|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_KT897276 (Clostridium botulinum strain INGR16-02E1 plasmid pINGR16-02E1, complete sequence) position: , mismatch: 7, identity: 0.767

tatttttattaggtgtaattttaatagatt	CRISPR spacer
attttttataaggtgtagttttaatttata	Protospacer
  ******* *******.*******  **

40. spacer 1.4|26518|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_KT897277 (Clostridium botulinum strain ST0210E1 plasmid pST0210E1, complete sequence) position: , mismatch: 7, identity: 0.767

tatttttattaggtgtaattttaatagatt	CRISPR spacer
attttttataaggtgtagttttaatttata	Protospacer
  ******* *******.*******  **

41. spacer 1.8|26781|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MK562504 (Enterobacteria phage CHB7, complete genome) position: , mismatch: 7, identity: 0.767

tcatggcatttaaaccaccaattgcagcat	CRISPR spacer
cacgggcagttaaaacaccaattgcagcac	Protospacer
.   **** ***** **************.

42. spacer 1.8|26781|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP024336 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp41, complete sequence) position: , mismatch: 7, identity: 0.767

tcatggcatttaaaccaccaattgcagcat	CRISPR spacer
tttgtgtatttaaaccaccaattgaagcag	Protospacer
*.   *.***************** ****

43. spacer 1.8|26781|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP024340 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-5) position: , mismatch: 7, identity: 0.767

tcatggcatttaaaccaccaattgcagcat	CRISPR spacer
tttgtgtatttaaaccaccaattgaagcag	Protospacer
*.   *.***************** ****

44. spacer 1.12|27046|30|NZ_CP017156|CRISPRCasFinder,CRT,PILER-CR matches to MG592429 (Vibrio phage 1.047.O._10N.286.55.F2, partial genome) position: , mismatch: 7, identity: 0.767

tgtcaagaggcgtaaataacgtaataagta	CRISPR spacer
gttcaagaggcgtaaataaagtaatcatcg	Protospacer
  ***************** ***** * ..

45. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to MK448463 (Streptococcus satellite phage Javan382, complete genome) position: , mismatch: 7, identity: 0.759

aaccacatcaccagccattgcaatcactg	CRISPR spacer
tacagtatccccagccattgcaatcacac	Protospacer
 ** ..*** *****************

46. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to MK448460 (Streptococcus satellite phage Javan376, complete genome) position: , mismatch: 7, identity: 0.759

aaccacatcaccagccattgcaatcactg	CRISPR spacer
tacagtatccccagccattgcaatcacac	Protospacer
 ** ..*** *****************

47. spacer 3.1|2323468|31|NZ_CP017156|CRISPRCasFinder matches to MN694044 (Marine virus AFVG_250M514, complete genome) position: , mismatch: 7, identity: 0.774

-cattgttgttagtgaagatgacgaagaaaac	CRISPR spacer
acagag-agttagagaagaagacgaagaaaaa	Protospacer
 **  *  ***** ***** ***********

48. spacer 1.1|26320|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MK448463 (Streptococcus satellite phage Javan382, complete genome) position: , mismatch: 8, identity: 0.733

taaccacatcaccagccattgcaatcactg	CRISPR spacer
ctacagtatccccagccattgcaatcacac	Protospacer
. ** ..*** *****************

49. spacer 1.1|26320|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MK448460 (Streptococcus satellite phage Javan376, complete genome) position: , mismatch: 8, identity: 0.733

taaccacatcaccagccattgcaatcactg	CRISPR spacer
ctacagtatccccagccattgcaatcacac	Protospacer
. ** ..*** *****************

50. spacer 1.4|26518|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NC_014023 (Bacillus megaterium QM B1551 plasmid pBM700, complete sequence) position: , mismatch: 8, identity: 0.733

tatttttattaggtgtaattttaatagatt	CRISPR spacer
tatttttattagttgtcattttacattcct	Protospacer
************ *** ******     .*

51. spacer 1.4|26518|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NC_014025 (Bacillus megaterium QM B1551 plasmid pBM500, complete sequence) position: , mismatch: 8, identity: 0.733

tatttttattaggtgtaattttaatagatt	CRISPR spacer
tatttttattagttgtcattttacattcct	Protospacer
************ *** ******     .*

52. spacer 1.4|26518|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 8, identity: 0.733

tatttttattaggtgtaattttaatagatt	CRISPR spacer
tatttttattgggtttaattttatttacac	Protospacer
**********.*** ******** * .  .

53. spacer 1.5|26584|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MK448463 (Streptococcus satellite phage Javan382, complete genome) position: , mismatch: 8, identity: 0.733

taaccacatcaccagccattgcaatcactg	CRISPR spacer
ctacagtatccccagccattgcaatcacac	Protospacer
. ** ..*** *****************

54. spacer 1.5|26584|30|NZ_CP017156|CRISPRCasFinder,CRT matches to MK448460 (Streptococcus satellite phage Javan376, complete genome) position: , mismatch: 8, identity: 0.733

taaccacatcaccagccattgcaatcactg	CRISPR spacer
ctacagtatccccagccattgcaatcacac	Protospacer
. ** ..*** *****************

55. spacer 1.7|26715|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP040830 (Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence) position: , mismatch: 8, identity: 0.733

ctgtgcttgttgaattgataccagcttcat	CRISPR spacer
aaacgcttggtgaattgatagcagctttac	Protospacer
  ..***** ********** ******.*.

56. spacer 1.9|26847|31|NZ_CP017156|CRISPRCasFinder,CRT,PILER-CR matches to MF417867 (Uncultured Caudovirales phage clone 3F_7, partial genome) position: , mismatch: 8, identity: 0.742

ttaaacaaaactgtagaggttatcattccaa	CRISPR spacer
tcaaacaaacctgtagaggttttcaacggag	Protospacer
*.******* *********** *** .  *.

57. spacer 1.10|26914|30|NZ_CP017156|CRISPRCasFinder,CRT,PILER-CR matches to KX822733 (Pseudoalteromonas phage PH357, complete genome) position: , mismatch: 8, identity: 0.733

gacaatcacagttaaagcgaaagatgcagc	CRISPR spacer
tggtttaacagttaatgctaaagatgcagc	Protospacer
 .   * ******** ** ***********

58. spacer 1.16|27310|30|NZ_CP017156|CRISPRCasFinder,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gtgtcccaaatcatctcgtgctgaaatgcc	CRISPR spacer
taatcccaaatcatatcgtgatgaaaagaa	Protospacer
  .*********** ***** ***** *

59. spacer 1.17|27376|30|NZ_CP017156|CRISPRCasFinder,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gtgtcccaaatcatctcgtgctgaaatgcc	CRISPR spacer
taatcccaaatcatatcgtgatgaaaagaa	Protospacer
  .*********** ***** ***** *

60. spacer 1.20|26585|29|NZ_CP017156|PILER-CR matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 8, identity: 0.724

aaccacatcaccagccattgcaatcactg	CRISPR spacer
aaccacgttaccagccattgcaaagcaaa	Protospacer
******.*.**************     .

61. spacer 1.21|26651|28|NZ_CP017156|PILER-CR matches to MN693874 (Marine virus AFVG_250M17, complete genome) position: , mismatch: 8, identity: 0.714

ctgcttttgtatggttgcctattttttc	CRISPR spacer
tcttggttttatggttgcctattttttg	Protospacer
.. .  ** ******************

62. spacer 3.1|2323468|31|NZ_CP017156|CRISPRCasFinder matches to MT939487 (Erwinia phage pEa_SNUABM_47, complete genome) position: , mismatch: 8, identity: 0.742

cattgttgttagtgaagatgacgaagaaaac	CRISPR spacer
tgttgttgttagtgatgatgaccaaaaccaa	Protospacer
..************* ****** **.*  *

63. spacer 1.1|26320|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 9, identity: 0.7

taaccacatcaccagccattgcaatcactg	CRISPR spacer
gaaccacgttaccagccattgcaaagcaaa	Protospacer
 ******.*.**************     .

64. spacer 1.5|26584|30|NZ_CP017156|CRISPRCasFinder,CRT matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 9, identity: 0.7

taaccacatcaccagccattgcaatcactg	CRISPR spacer
gaaccacgttaccagccattgcaaagcaaa	Protospacer
 ******.*.**************     .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

219701 : 232586

Staphylococcus_phage(88.89%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096076020.1\|219701_221099_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.3e-93	41.7
WP_157742156.1\|221079_222060_+	hypothetical protein	A0A2H4PQM0	Staphylococcus_phage	1.8e-36	32.9
WP_096076022.1\|222229_223279_+	acyltransferase	NA	NA	NA	NA
WP_096076023.1\|223310_223544_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	6.0e-23	66.7
WP_096076024.1\|223550_224324_-	hypothetical protein	NA	NA	NA	NA
WP_096076025.1\|224368_224839_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.3e-28	43.9
WP_096076026.1\|224822_225572_+	prolyl oligopeptidase family serine peptidase	A0A2H4PQM6	Staphylococcus_phage	7.0e-57	50.0
WP_096076027.1\|225741_227331_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	8.9e-219	71.0
WP_096076028.1\|227739_228930_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.4e-168	77.7
WP_096076029.1\|229015_229204_-	hypothetical protein	NA	NA	NA	NA
WP_096076030.1\|229449_230364_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	5.9e-58	46.3
WP_096078061.1\|230453_232586_-	hypothetical protein	S4VYY2	Pandoravirus	1.3e-07	24.2

DBSCAN-SWA_2

289403 : 296127

Staphylococcus_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096076089.1\|289403_290465_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	8.4e-64	40.0
WP_096076090.1\|290445_291069_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.2e-40	43.9
WP_096076091.1\|291068_292259_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	3.2e-128	59.1
WP_096076092.1\|292255_292720_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-41	65.6
WP_096076093.1\|292843_293833_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.8e-107	60.4
WP_096076094.1\|294295_295390_+	AAA family ATPase	A0A2K9VDE3	Lactobacillus_phage	5.8e-68	37.4
WP_096076095.1\|295401_296127_+	nicotinamide mononucleotide transporter	U5J9C5	Bacillus_phage	7.8e-29	35.4

DBSCAN-SWA_3

770546 : 782168

Streptococcus_phage(63.64%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031942290.1\|770546_771233_+\|transposase	IS6-like element IS1216 family transposase	A0A1X9I6C6	Streptococcus_phage	1.6e-127	99.6
WP_002405438.1\|771993_772353_+	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	2.3e-26	60.2
WP_005228365.1\|772866_773034_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	8.1e-14	64.0
WP_002405437.1\|773121_775062_-	tetracycline resistance ribosomal protection protein Tet(S)	A0A2K5B2A5	Erysipelothrix_phage	6.0e-294	78.7
WP_031942290.1\|776171_776858_+\|transposase	IS6-like element IS1216 family transposase	A0A1X9I6C6	Streptococcus_phage	1.6e-127	99.6
WP_002294505.1\|777028_777892_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	A0A1X9I6F2	Streptococcus_phage	8.7e-168	100.0
WP_000662263.1\|777924_778659_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
WP_000233000.1\|778639_779509_-	hypothetical protein	A0A1X9I6C9	Streptococcus_phage	6.7e-152	90.7
WP_000205227.1\|779523_779748_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002390960.1\|779890_781435_-	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	1.8e-256	88.7
WP_000323438.1\|781454_781871_-	recombinase	A0A2K5B2B3	Erysipelothrix_phage	1.2e-71	98.6
WP_002360685.1\|781871_782168_-	hypothetical protein	A0A2K5B2B2	Erysipelothrix_phage	4.6e-44	91.8

DBSCAN-SWA_4

914148 : 951959

Staphylococcus_phage(50.0%)

integrase,tRNA,terminase,protease,coat

attL 915066:915083|attR 928831:928848

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096076680.1\|914148_915048_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
915066:915083	attL	NA	NA	NA	NA
WP_096076681.1\|915331_916396_-	SAP domain-containing protein	NA	NA	NA	NA
WP_096076682.1\|916614_917043_-	hypothetical protein	A0A1W6JPD2	Staphylococcus_phage	5.0e-07	34.6
WP_096076683.1\|917046_917607_-	type II toxin-antitoxin system HicB family antitoxin	A0A1W6JPJ2	Staphylococcus_phage	5.3e-33	45.5
WP_096076684.1\|917603_917852_-	hypothetical protein	NA	NA	NA	NA
WP_096076685.1\|917951_918293_-	hypothetical protein	NA	NA	NA	NA
WP_096076686.1\|918289_918832_-\|coat	spore coat protein	A0A2H4JBD6	uncultured_Caudovirales_phage	3.4e-13	38.2
WP_096076687.1\|919217_919499_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_096076688.1\|919621_920896_-	hypothetical protein	NA	NA	NA	NA
WP_096076689.1\|921208_921445_-	hypothetical protein	NA	NA	NA	NA
WP_096076690.1\|921434_922058_-	hypothetical protein	NA	NA	NA	NA
WP_096076691.1\|922057_922294_-	hypothetical protein	NA	NA	NA	NA
WP_096076692.1\|922620_924360_-	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	2.1e-128	43.9
WP_096076693.1\|924352_925186_-	hypothetical protein	A0A1W6JQL5	Staphylococcus_phage	1.9e-31	30.5
WP_096076694.1\|925240_925576_-	DUF1474 family protein	NA	NA	NA	NA
WP_096076695.1\|925681_925960_-	hypothetical protein	NA	NA	NA	NA
WP_157742187.1\|925961_926135_-	hypothetical protein	NA	NA	NA	NA
WP_096076696.1\|926146_926413_-	hypothetical protein	NA	NA	NA	NA
WP_096076697.1\|926416_926590_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_096076698.1\|926778_927441_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_096076699.1\|927458_928682_+\|integrase	site-specific integrase	U5U466	Staphylococcus_phage	5.9e-69	37.7
WP_096076700.1\|928870_929215_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
928831:928848	attR	NA	NA	NA	NA
WP_096076701.1\|929602_930499_-	NERD domain-containing protein	NA	NA	NA	NA
WP_096076702.1\|930739_932932_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.9e-17	24.9
WP_096076703.1\|932924_933257_-	YlxQ family RNA-binding protein	NA	NA	NA	NA
WP_096076704.1\|933253_933541_-	YlxR family protein	NA	NA	NA	NA
WP_096076705.1\|933549_934614_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_096076706.1\|934627_935095_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_096076707.1\|935208_939510_-	PolC-type DNA polymerase III	A0A0A8WJ41	Clostridium_phage	4.1e-24	43.8
WP_096076708.1\|939581_941288_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_096076709.1\|941444_942722_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_096076710.1\|942723_943860_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_096076711.1\|943971_944763_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_096076712.1\|944773_945547_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	9.2e-28	43.7
WP_096076713.1\|945678_946236_-	ribosome recycling factor	NA	NA	NA	NA
WP_096076714.1\|946279_947002_-	UMP kinase	NA	NA	NA	NA
WP_096076715.1\|947206_948088_-	elongation factor Ts	NA	NA	NA	NA
WP_096076716.1\|948221_948998_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_096076717.1\|949193_949967_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_096076718.1\|950031_951402_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IDZ7	Erwinia_phage	1.6e-27	25.7
WP_096076719.1\|951416_951959_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_5

1201158 : 1260395

Bacillus_phage(18.18%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157742193.1\|1201158_1201686_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_096076957.1\|1201693_1202563_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_096076958.1\|1202627_1204145_+	hypothetical protein	NA	NA	NA	NA
WP_096076959.1\|1204195_1205539_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_096076960.1\|1205571_1207113_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	2.3e-17	27.9
WP_096076961.1\|1207178_1207952_-	TerC family protein	S5MAL1	Bacillus_phage	8.3e-29	41.8
WP_096076962.1\|1208030_1209593_-	peptide chain release factor 3	D0R0F5	Streptococcus_phage	1.7e-36	28.6
WP_096076963.1\|1209604_1209844_-	hypothetical protein	NA	NA	NA	NA
WP_096076964.1\|1209824_1211321_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
WP_096076965.1\|1211445_1212159_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.5e-27	29.4
WP_096076966.1\|1212158_1213346_+	ABC transporter permease	NA	NA	NA	NA
WP_096076967.1\|1213489_1214659_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA
WP_096076968.1\|1214636_1215836_+	MFS transporter	NA	NA	NA	NA
WP_096076969.1\|1215873_1216749_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.0e-70	48.4
WP_096076970.1\|1216893_1217991_-	AI-2E family transporter	NA	NA	NA	NA
WP_157742194.1\|1218083_1218806_+	esterase family protein	NA	NA	NA	NA
WP_096076972.1\|1218849_1219359_+	hypothetical protein	NA	NA	NA	NA
WP_096076973.1\|1219387_1220161_-	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_096076974.1\|1220308_1222147_-	sodium:proton antiporter	NA	NA	NA	NA
WP_096076975.1\|1222156_1223533_-	magnesium transporter	NA	NA	NA	NA
WP_096078098.1\|1223558_1224416_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_096076976.1\|1224415_1225213_-	NAD kinase	NA	NA	NA	NA
WP_096076977.1\|1225225_1225855_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_096076978.1\|1225869_1226214_-	hypothetical protein	NA	NA	NA	NA
WP_096076979.1\|1226361_1226949_+	CYTH domain-containing protein	NA	NA	NA	NA
WP_096076980.1\|1226996_1227362_+	globin	NA	NA	NA	NA
WP_096076981.1\|1227381_1228164_+	hypothetical protein	NA	NA	NA	NA
WP_096076982.1\|1228496_1230305_-	oligoendopeptidase F	NA	NA	NA	NA
WP_096076983.1\|1230341_1231334_-	hypothetical protein	NA	NA	NA	NA
WP_096076984.1\|1231410_1232079_-	adaptor protein MecA	NA	NA	NA	NA
WP_096076985.1\|1232222_1232618_-	transcriptional regulator Spx	NA	NA	NA	NA
WP_096076986.1\|1233094_1234087_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_096076987.1\|1234136_1235804_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096078099.1\|1236143_1237109_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_096076988.1\|1237363_1238437_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-18	30.7
WP_096076989.1\|1238451_1239510_-	ABC transporter permease	NA	NA	NA	NA
WP_096076990.1\|1239509_1240436_-	ABC transporter permease	NA	NA	NA	NA
WP_096076991.1\|1240591_1242229_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_157742195.1\|1242547_1242910_+	DUF3899 domain-containing protein	NA	NA	NA	NA
WP_096076993.1\|1243008_1243911_-	hypothetical protein	NA	NA	NA	NA
WP_096076994.1\|1243992_1245228_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_096076995.1\|1245227_1246181_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_096076996.1\|1246260_1247268_-	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_096076997.1\|1247356_1247551_+	YjzD family protein	NA	NA	NA	NA
WP_096076998.1\|1247578_1250161_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	1.1e-120	37.2
WP_096076999.1\|1250335_1251031_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_096077000.1\|1251061_1251370_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_096077001.1\|1251466_1252276_+	HAD family phosphatase	NA	NA	NA	NA
WP_096077002.1\|1252287_1253607_+	CoA-disulfide reductase	NA	NA	NA	NA
WP_157742196.1\|1253649_1254174_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-34	46.8
WP_096077004.1\|1254151_1254460_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_096076783.1\|1254525_1255053_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_096077005.1\|1255239_1255584_+	PTS transporter subunit EIIB	NA	NA	NA	NA
WP_096077006.1\|1255999_1256551_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	2.3e-36	46.4
WP_096078100.1\|1256803_1258738_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.3e-88	34.6
WP_048728532.1\|1259097_1259412_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157742196.1\|1259584_1260109_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.2e-34	46.8
WP_096077004.1\|1260086_1260395_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1375022 : 1383046

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096077119.1\|1375022_1375991_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	5.3e-158	83.9
WP_096077120.1\|1376093_1378199_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	83.0
WP_096077121.1\|1378161_1378557_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	2.4e-32	54.5
WP_096077122.1\|1379022_1379520_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	6.5e-51	64.9
WP_096077123.1\|1379791_1381303_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	8.3e-73	36.5
WP_096077124.1\|1381540_1383046_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	4.2e-77	38.6

DBSCAN-SWA_7

2077343 : 2085995

Staphylococcus_phage(50.0%)

integrase

attL 2078136:2078157|attR 2088880:2088901

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096077770.1\|2077343_2077874_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.4e-54	63.6
WP_096077771.1\|2077907_2078150_+	30S ribosomal protein S18	NA	NA	NA	NA
2078136:2078157	attL	NA	NA	NA	NA
WP_096077772.1\|2078258_2079089_-	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	2.6e-105	67.1
WP_096077773.1\|2079105_2079489_-	hypothetical protein	NA	NA	NA	NA
WP_096077774.1\|2079490_2080714_-\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	1.8e-118	54.1
WP_157742245.1\|2080717_2081524_-	helix-turn-helix domain-containing protein	A0A2H4JH10	uncultured_Caudovirales_phage	8.2e-11	28.9
WP_096077776.1\|2081717_2081960_+	helix-turn-helix transcriptional regulator	A0A1W6JPB7	Staphylococcus_phage	4.2e-11	49.3
WP_096077777.1\|2081959_2082598_+	phage repressor protein	A0A2H4JB17	uncultured_Caudovirales_phage	6.6e-40	44.5
WP_096077778.1\|2082771_2083047_+	pathogenicity island protein	NA	NA	NA	NA
WP_096077779.1\|2083060_2083408_+	hypothetical protein	NA	NA	NA	NA
WP_157742246.1\|2083435_2083663_+	hypothetical protein	NA	NA	NA	NA
WP_157742247.1\|2083801_2084665_+	hypothetical protein	A0A1W6JQL5	Staphylococcus_phage	1.3e-19	24.6
WP_096077782.1\|2084639_2085995_+	hypothetical protein	A0A2H4JBE3	uncultured_Caudovirales_phage	6.1e-67	35.9
2088880:2088901	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017156

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection