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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP023156 Xanthomonas citri pv. malvacearum strain AR81009 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP023157 Xanthomonas citri pv. malvacearum strain AR81009 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP023158 Xanthomonas citri pv. malvacearum strain AR81009 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP023155 Xanthomonas citri pv. malvacearum strain AR81009 chromosome, complete genome 6 crisprs DinG,cas3,WYL,DEDDh,csa3 0 6 13 0

Results visualization

1. NZ_CP023156
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 71134 52 Escherichia_phage(22.22%) integrase,transposase attL 5657:5716|attR 70530:71141
DBSCAN-SWA_2 77127 : 79629 5 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_3 84799 : 90516 6 Burkholderia_virus(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP023155
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023155_1 43079-43433 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023155_2 356438-356520 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023155_3 2948853-2948947 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023155_4 3376104-3376242 Orphan NA
1 spacers
DEDDh,csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023155_5 4949943-4950127 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP023155_6 5223165-5223240 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP023155_6 6.1|5223190|26|NZ_CP023155|CRISPRCasFinder 5223190-5223215 26 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 281142-281167 4 0.846
NZ_CP023155_6 6.1|5223190|26|NZ_CP023155|CRISPRCasFinder 5223190-5223215 26 NC_016585 Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence 209772-209797 4 0.846
NZ_CP023155_1 1.11|43212|31|NZ_CP023155|CRISPRCasFinder 43212-43242 31 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 934481-934511 6 0.806
NZ_CP023155_1 1.13|43323|34|NZ_CP023155|CRISPRCasFinder 43323-43356 34 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1614842-1614875 6 0.824
NZ_CP023155_1 1.11|43212|31|NZ_CP023155|CRISPRCasFinder 43212-43242 31 NZ_CP015279 Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence 150331-150361 7 0.774
NZ_CP023155_1 1.11|43212|31|NZ_CP023155|CRISPRCasFinder 43212-43242 31 NZ_CP015280 Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence 81610-81640 7 0.774
NZ_CP023155_1 1.13|43323|34|NZ_CP023155|CRISPRCasFinder 43323-43356 34 MH271303 Microbacterium phage MementoMori, complete genome 20739-20772 8 0.765
NZ_CP023155_1 1.13|43323|34|NZ_CP023155|CRISPRCasFinder 43323-43356 34 MN813682 Microbacterium phage Matzah, complete genome 21015-21048 8 0.765
NZ_CP023155_1 1.13|43323|34|NZ_CP023155|CRISPRCasFinder 43323-43356 34 MK937591 Microbacterium phage Cinna, complete genome 21039-21072 8 0.765
NZ_CP023155_1 1.14|43380|31|NZ_CP023155|CRISPRCasFinder 43380-43410 31 NZ_CP050094 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence 380719-380749 8 0.742
NZ_CP023155_1 1.5|43317|38|NZ_CP023155|CRT 43317-43354 38 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1614844-1614881 10 0.737
NZ_CP023155_1 1.6|43374|35|NZ_CP023155|CRT 43374-43408 35 NZ_CP049358 Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence 138975-139009 10 0.714
NZ_CP023155_1 1.13|43323|34|NZ_CP023155|CRISPRCasFinder 43323-43356 34 NC_016588 Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence 72444-72477 11 0.676
NZ_CP023155_1 1.13|43323|34|NZ_CP023155|CRISPRCasFinder 43323-43356 34 NZ_AP012556 Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence 22147-22180 12 0.647
NZ_CP023155_1 1.13|43323|34|NZ_CP023155|CRISPRCasFinder 43323-43356 34 NZ_CP023152 Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence 116465-116498 12 0.647

1. spacer 6.1|5223190|26|NZ_CP023155|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 4, identity: 0.846

gccgatgtggcgtcggacgactcgcc	CRISPR spacer
gccgatgcggcgtcggacgacgcgaa	Protospacer
*******.************* **  

2. spacer 6.1|5223190|26|NZ_CP023155|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 4, identity: 0.846

gccgatgtggcgtcggacgactcgcc	CRISPR spacer
accgacgtggcgtcggacgcctcgac	Protospacer
.****.************* **** *

3. spacer 1.11|43212|31|NZ_CP023155|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.806

cgcatcggcgacaacgcgcgtaccg-gtggcg	CRISPR spacer
cgcagcggcgacaacgcgcgcaccatcttgc-	Protospacer
**** ***************.***.  * ** 

4. spacer 1.13|43323|34|NZ_CP023155|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

ctcgccgagcgcggcagccagatcagtggcggcg-	CRISPR spacer
ttcgtcgagcgcggcagccagatca-tggggctgg	Protospacer
.***.******************** *** * .* 

5. spacer 1.11|43212|31|NZ_CP023155|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

6. spacer 1.11|43212|31|NZ_CP023155|CRISPRCasFinder matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcatcggcgacaacgcgcgtaccggtggcg	CRISPR spacer
atcaccggcgacaacgcgcgcaccgccgccg	Protospacer
  **.***************.**** .* **

7. spacer 1.13|43323|34|NZ_CP023155|CRISPRCasFinder matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * ** 

8. spacer 1.13|43323|34|NZ_CP023155|CRISPRCasFinder matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * ** 

9. spacer 1.13|43323|34|NZ_CP023155|CRISPRCasFinder matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 8, identity: 0.765

ctcgccgagcgcggcagccagat-cagtggcggcg	CRISPR spacer
ctcgccgagcgcggcatcccgatcctctccctgc-	Protospacer
**************** ** *** *  *  * ** 

10. spacer 1.14|43380|31|NZ_CP023155|CRISPRCasFinder matches to NZ_CP050094 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b4, complete sequence) position: , mismatch: 8, identity: 0.742

gggctggtgggaaccgagctcggcaagggca	CRISPR spacer
ctgctggtgggaatcgagttcggcaccgcaa	Protospacer
  ***********.****.******  *  *

11. spacer 1.5|43317|38|NZ_CP023155|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.737

agcatcctcgccgagcgcggcagccagatcagtggcgg	CRISPR spacer
atgttcttcgtcgagcgcggcagccagatcatggggct	Protospacer
*   **.***.********************  **   

12. spacer 1.6|43374|35|NZ_CP023155|CRT matches to NZ_CP049358 (Deinococcus wulumuqiensis R12 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

agcatcgggctggtgggaaccgagctcggcaaggg	CRISPR spacer
agcatcgggcgggtgggcaccgagccgaccatcat	Protospacer
********** ****** *******. . **  . 

13. spacer 1.13|43323|34|NZ_CP023155|CRISPRCasFinder matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 11, identity: 0.676

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
ctcggcgagcgcggcggccagatcctcctccatc	Protospacer
**** **********.********  .  * .. 

14. spacer 1.13|43323|34|NZ_CP023155|CRISPRCasFinder matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

15. spacer 1.13|43323|34|NZ_CP023155|CRISPRCasFinder matches to NZ_CP023152 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_1, complete sequence) position: , mismatch: 12, identity: 0.647

ctcgccgagcgcggcagccagatcagtggcggcg	CRISPR spacer
gccgccgagcgcagcagcccgatcagcccgtaga	Protospacer
 .**********.****** ******.    . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7532 : 38443 26 Escherichia_phage(50.0%) transposase,integrase,protease attL 1920:1933|attR 38822:38835
DBSCAN-SWA_2 908930 : 920700 11 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_3 1267563 : 1330582 48 Acinetobacter_phage(22.22%) transposase,tRNA,integrase attL 1300324:1300341|attR 1307246:1307263
DBSCAN-SWA_4 1494748 : 1575708 53 Serratia_phage(10.0%) tRNA,transposase,protease NA
DBSCAN-SWA_5 1865021 : 1913272 40 Streptomyces_phage(16.67%) transposase,tRNA,protease NA
DBSCAN-SWA_6 2253351 : 2288790 26 Acinetobacter_phage(28.57%) tRNA,transposase,integrase,protease attL 2274310:2274354|attR 2288910:2288954
DBSCAN-SWA_7 2510795 : 2558978 42 Escherichia_phage(33.33%) transposase,integrase attL 2511273:2511297|attR 2559483:2559507
DBSCAN-SWA_8 2586595 : 2641210 53 Burkholderia_phage(22.22%) transposase NA
DBSCAN-SWA_9 2648597 : 2793291 114 Xanthomonas_phage(31.25%) transposase,integrase,coat attL 2706244:2706303|attR 2792164:2793360
DBSCAN-SWA_10 2928594 : 3015768 55 uncultured_Caudovirales_phage(45.45%) transposase,tRNA NA
DBSCAN-SWA_11 3172043 : 3182821 7 uncultured_Caudovirales_phage(16.67%) tRNA NA
DBSCAN-SWA_12 3953111 : 4018791 60 Escherichia_phage(23.53%) transposase,integrase,protease attL 3953014:3953031|attR 3976170:3976187
DBSCAN-SWA_13 4794246 : 4850934 46 Bacillus_phage(37.5%) transposase,integrase attL 4794208:4794267|attR 4815550:4816858
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage