CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP021060	Taylorella equigenitalis strain 92-0972 chromosome, complete genome	3 crisprs	cas1,cas8f,cas5f,cas7f,cas6f,DEDDh,cas3	0	12	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP021060_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021060_1

62615-62733

Unclear

Consensus_repeat	Method
CCCCAGCCGTAGCCCCAGATAGAAGCTCCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP021060_1

>merge|NZ_CP021060|1|62615-62733|CRISPRCasFinder
CCCCAGCCGTAGCCCCAGATAGAAGCTCCTATCATCAACCTGCCCCAGCCGTGGTCTCCAACAGTGGTTCACAGCTCGAAACCCTCAGCCCCCAGCCGTAGCCCCAGCTAGAAGCTCCT

>NZ_CP021060|1|1|62615-62733|CRISPRCasFinder
CCCCAGCCGTAGCCCCAGATAGAAGCTCCT	ATCATCAACCTGCCCCAGCCGTGGTCTCCAACAGTGGTTCACAGCTCGAAACCCTCAGC
CCCCAGCCGTAGCCCCAGCTAGAAGCTCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021060.1\|WP_013521854.1\|54026_54905_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|367441
NZ_CP021060.1\|WP_054393505.1\|68221_69595_-\|ATP-dependent-RNA-helicase-DbpA	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236977
NZ_CP021060.1\|WP_054393504.1\|64102_65485_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|224128
NZ_CP021060.1\|WP_013521875.1\|74864_75596_+\|response-regulator	unknown	unknown	gnl\|CDD\|381102
NZ_CP021060.1\|WP_013521872.1\|70592_71870_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	unknown	unknown	gnl\|CDD\|236790
NZ_CP021060.1\|WP_013521862.1\|59363_59858_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021060.1\|WP_054393506.1\|72458_74780_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|227333
NZ_CP021060.1\|WP_054393501.1\|55067_55712_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP021060.1\|WP_054393502.1\|57908_58208_+\|DUF493-family-protein	unknown	unknown	gnl\|CDD\|377327
NZ_CP021060.1\|WP_013521858.1\|57036_57912_+\|D-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|238799
NZ_CP021060.1\|WP_013521867.1\|65496_66327_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239648
NZ_CP021060.1\|WP_013521868.1\|66359_67238_-\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP021060.1\|WP_015555558.1\|62740_64102_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP021060.1\|WP_013521861.1\|58926_59304_+\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NZ_CP021060.1\|WP_095681267.1\|71835_72486_+\|DUF4390-domain-containing-protein	unknown	unknown	gnl\|CDD\|373018
NZ_CP021060.1\|WP_013521857.1\|55721_57014_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP021060.1\|WP_014840009.1\|69643_70600_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP021060.1\|WP_015555557.1\|58207_58861_+\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP021060.1\|WP_014840006.1\|60062_61049_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP021060.1\|WP_095681266.1\|61049_62549_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|187557

Protein	Function_ID	Function_description	E-value
NZ_CP021060.1\|WP_013521854.1\|54026_54905_+\|type-III-pantothenate-kinase	gnl\|CDD\|367441	pfam03309, Pan_kinase, Type III pantothenate kinase. Type III pantothenate kinase catalyzes the phosphorylation of pantothenate (Pan), the first step in the universal pathway of CoA biosynthesis.	7.98796e-38
NZ_CP021060.1\|WP_054393505.1\|68221_69595_-\|ATP-dependent-RNA-helicase-DbpA	gnl\|CDD\|236977	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.	0
NZ_CP021060.1\|WP_013521875.1\|74864_75596_+\|response-regulator	gnl\|CDD\|381102	cd17550, REC_NtrX-like, phosphoacceptor receiver (REC) domain of nitrogen assimilation regulatory protein NtrX and similar proteins. NtrX is part of the two-component regulatory system NtrY/NtrX that is involved in the activation of nitrogen assimilatory genes such as Gln. It is phosphorylated by the histidine kinase NtrY and interacts with sigma-54. NtrX is a member of the NtrC family, characterized by a domain architecture containing an N-terminal REC domain, followed by a central sigma-54 interaction/ATPase domain, and a C-terminal DNA binding domain. NtrC family response regulators are sigma54-dependent transcriptional activators. Also included in this subfamily is Aquifex aeolicus NtrC4. The ability of the central domain to hydrolyze ATP and thus to interact effectively with a complex of RNA polymerase, sigma54, and promoter, is controlled by the phosphorylation status of the REC domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.97678e-56
NZ_CP021060.1\|WP_014840006.1\|60062_61049_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP021060.1\|WP_013521872.1\|70592_71870_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	gnl\|CDD\|236790	PRK10901, PRK10901, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	9.82434e-158
NZ_CP021060.1\|WP_014840009.1\|69643_70600_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	4.63015e-155
NZ_CP021060.1\|WP_054393506.1\|72458_74780_+\|HAMP-domain-containing-protein	gnl\|CDD\|227333	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].	1.11379e-150
NZ_CP021060.1\|WP_054393501.1\|55067_55712_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.04358e-53
NZ_CP021060.1\|WP_054393502.1\|57908_58208_+\|DUF493-family-protein	gnl\|CDD\|377327	pfam04359, DUF493, Protein of unknown function (DUF493). This domain is likely to act in a regulatory capacity like pfam01842 domains. This domain has a remarkable property in that the C-terminal residue of every protein in the family lies up in the alignment. This suggests that the C-terminal residue plays some important functional role (Bateman A pers obs).	6.13876e-37
NZ_CP021060.1\|WP_013521858.1\|57036_57912_+\|D-amino-acid-aminotransferase	gnl\|CDD\|238799	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.	1.40741e-108
NZ_CP021060.1\|WP_013521867.1\|65496_66327_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239648	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.87664e-42
NZ_CP021060.1\|WP_013521868.1\|66359_67238_-\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	4.19528e-161
NZ_CP021060.1\|WP_015555558.1\|62740_64102_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.01198e-40
NZ_CP021060.1\|WP_013521861.1\|58926_59304_+\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	1.01291e-16
NZ_CP021060.1\|WP_095681267.1\|71835_72486_+\|DUF4390-domain-containing-protein	gnl\|CDD\|373018	pfam14334, DUF4390, Domain of unknown function (DUF4390). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 192 and 203 amino acids in length.	4.67713e-41
NZ_CP021060.1\|WP_013521857.1\|55721_57014_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.46399e-123
NZ_CP021060.1\|WP_015555557.1\|58207_58861_+\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	5.80871e-93
NZ_CP021060.1\|WP_054393504.1\|64102_65485_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|224128	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane].	0
NZ_CP021060.1\|WP_095681266.1\|61049_62549_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|187557	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs. This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.35583e-125

>NZ_CP021060.1|WP_095681266.1|61049_62549_+|GDP-mannose-4,6-dehydratase
MRVLVTGGCGFIGHHFVDFATNHSSKIYKKVLNLDNLSYASINCPNGDFILGDICDEGLLYKVLREHKIDTLVHFAAQTHVDRSIQNPIPFVTDNIQGTISLLTCCTEYIKETGVNFKFVYISTDEVYGSIAPNTSPLSETQPLHPRNPYAVSKASAELFVQAWVNTFAFPAVITRSSNNYGTGQHTEKFIPKIIDRALKWSSIPIYGNGHASREWLHVLDNCEAIHGLLTSDIKFKGQVFNITSSDSYTNIDLANMVCEKLDELKPHSKGSYKQLIEFVDDRPGHDMRYAIDSSKIKSTLSWTPTRLIADHINELVEGASPEVLPHTEKAHLLHFPKYTDTRGSVSPRELHALHNQTGTNFVQENFTKSVLGTLRGLHFQCERPQAKLIQVLEGKILDVVVDLRPHSDEFGTWKSFKLKQGDSLFVPAGYAHGYLTLSESSYVLYKLSDFYDPKDQYSIRYDDQYLNIDWGGEISADDYVLSPKDRQGMTWSEFLNSI
>NZ_CP021060.1|WP_014840006.1|60062_61049_+|lipoyl-synthase
MTLQKTTPADKDLSYDATKKQKSFDKTSRIPIKIVPAEKLKKPEWIRVKVAPTNSKFSEIKGILRENKMVTVCEEASCPNIGECFGRGTATFMIMGDKCTRRCPFCDVGHGRPDPLDTSEPHNLAQSIARMGLSYVVITSVDRDDLRDGGAQHYVDCINEIRNQSPKTKIEVLVPDFRGRLERALDIFSKGLPDVMNHNLETVPRLYKQARPGADYLHSLKLLKNFKTLYPDVPTKSGLMVGLGESDEEILDVMMDMREHNIDMLTIGQYLQPSDHHLPVLRYVTPKTFSMFEEKAEQMGFSHAAVGALVRSSYHADQQAHQAGLETA
>NZ_CP021060.1|WP_013521862.1|59363_59858_+|hypothetical-protein
MFMGLSGWLAVYLALDLAWGAFIAIFLVREVSNYLNVLQVYSGTQIYIFLAITLILLAFQIWILYKRIPALMAKNRSPETPNLVVKTMWYEIVPLLVYALINIYFAVSFGLNSSKTIISYVVLLAIVSVIKFAWTKYYQQSPNVRNTFGSNANADVANLLKPQK
>NZ_CP021060.1|WP_013521861.1|58926_59304_+|outer-membrane-protein-assembly-factor-BamE
MKKFALPLVLSLGLTACGSLTQVSPEGQPQSDIKWPEVNSGITGTMPPKQTVRELKTGMHKNDFYNLIGVPHFSEGWDVREWDYLFRVEDKGVMKQCQFKILFDKDNRAKNFYWKPVECAGLYAQ
>NZ_CP021060.1|WP_015555557.1|58207_58861_+|lipoyl(octanoyl)-transferase-LipB
MADPLESKVQIKYFEGFSDYQSIFTLMKSFSDSRDFDSDDELWVLQFNPVYTLGVAGDPKHVLNPKQIPVIRTNRGGQVTYHGPGQIVVYPLLNLHRKNLFVKEYVNLIEESVIDTLKLIGIPNAQRMPGAPGVYVPNSDNSLSKIASLGIKVTKGFSYHGFALNVDMDLSPFLGINPCGYEHLKVIDIKTIASNCKIDKIKFVLIERLLSRLKLLK
>NZ_CP021060.1|WP_054393502.1|57908_58208_+|DUF493-family-protein
MSEKSDLTFPDISPEDSLIEYPSDFPIKVMALSGDAVLDELLGLVQSHDEGFIRETVEIRPSSKGTYVGYTFTIKATSREQLDNLYRALHSHEKVKMVL
>NZ_CP021060.1|WP_013521858.1|57036_57912_+|D-amino-acid-aminotransferase
MNPLIQGVDIDYPVYLNGEMVNISEAKISVLDRGFIFGDGIYEVVPAYNRKPFRMDHHVARLMRSLKKIGIEVGKDEQFFKDIFTKLIKESPWENNFVYLQVTRGVAARTHAFPNPKVEPTIFAMSMKFNPPSEKVRTEGIAVVSFEDMRWLHCDIKSISLLGNVLANQHAVDSGVYEVIQFRDGFLTEGSCSNFWIVKDGKFMGPLKDNLKLEGIRFGLFEELAQKAGIPFELRKITKEEVYEADEIMISSASKEVTAVTQLDGKPVGDGKPGPIYAKMRKAHDEVLAAL
>NZ_CP021060.1|WP_013521857.1|55721_57014_+|D-alanyl-D-alanine-carboxypeptidase
MTRRKSPVKLILILLLLVLGIFVAIKFFNAKHSSTKHTESNIIASPVVPLKPSIRDHSERSSIIPTTKDTPALADVAGIAIPQLDVKSWIIIDMESGQIIAQYNPDLKVAPASLTKLMTSSLVFEAIKDKRISLDQEVIVSERAWKTGGSRMFINVNKKVTIGELLQGMIVQSGNDASIQLAESVSGTIDAFVKEMNDSLQAFHMLNSHFADPTGLPSPNTYTTARDLSVLAQHIIVDFPQFYHYFSQPEFTYNKIRQTNTNGLLGKIEGLDGLKTGHTDEAGYCLVTSVKRNNRRILTILMGADSIKHREQLSKQLIDWTFQNFVNIEWAKANTPFVEHSIRDAKNKKAVFQSTKPVVITVPRGHEANIQVLSNTSNDLKAPLKAGQAFAEAQFALNGKLLKNERLVLAHDVERAGFFKRLLNRITSVF
>NZ_CP021060.1|WP_054393501.1|55067_55712_+|alpha/beta-hydrolase
MKTQALKIPSPIGVIECDIDWPSDEGQSDITGWALCLHPHPLFDGTKNNKVITTFSRACVSMGYVCFRPNFRGVGGSEGKFDDSVGETQDMRFLIDYIKQNFPQFQNKPWVLGGFSFGSAVAAQLHQTLKDESLELPSALILLGVAVWKYAKKEVELPSKTLLIHGFDDEIIPLKDVLEWLKNYELPLVTIPNSGHFFHGKLIIIKKLIEEFLR
>NZ_CP021060.1|WP_013521854.1|54026_54905_+|type-III-pantothenate-kinase
MDKICILIDSGNTRIKARAFVVGHPDASSDLNKAIIDEITIYNQEYARILGFVEKIQRQGQIVKVYGISVATENIRSDLENVFVSLNLKKAKEFKQSEPIIWLESEEKAFSLTNMYESPKQLGVDRWFGIIGAHYHLTQQLKDDSNRALIHVSFGTATTVDCMHNEQLIGGTILPGLQMMFDSLFRGTAHLPKVATSASDIVNFPLNTHAAIQTGVVCAQAGAVFRQVQKLWFLTTQVPYVFISGGAKDTIVDEIRSICSHWSTAAGLPSVECIELETTVLDGLQYFVSKEM
>NZ_CP021060.1|WP_015555558.1|62740_64102_-|MFS-transporter
MATTHEGLKKPQIYWAATCVFAVIAVCVIDGIITNIALPTIQSYFGVSQQESIWVVNAYNIVLISTLFTFSSLADRYGFKRLLRVGLIVFGVGAFGSLMSQSLSMLIMCRIVQGFGAALIMALTGGLIRNIYPKERVAMGIAFNGMVIGACALIAPSLGAFIIKIADWHWIYGFSIPIIALGLFLSRFLPRLPRHDKSIDYKSAILNAVTFGSLVAGLDIIYSNPLWGSLLLIISITSVVTLYRHALSQEHPMVPVDLLKIVPFRDAALVSTFAFLSATASMVSVPFYFEHILHYNTETVGLIYSSWPVAGVIMGPVSAKLSERFSAGLLSGIGSLILMCGITTLTYLPTDSSKLVFALAMFVGGLGFGLLQTPNGKTLLLSAPHNRASAAGGMQATSRILGQCLGGALVATSFSINSQQGAHYGLIVSIITAFIAVLINLYRILSKQDRQVM
>NZ_CP021060.1|WP_054393504.1|64102_65485_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MILNIVILAAGKGKRMKSNLPKVLHKIASKPMLMHVLDTASELQADTTTVVIGHGADKVKNACEGIENLNFALQDPPQGTGHAVLQASSFLKVGDADNSKTLILYGDVPLIQAYTLKKLIESSGAGVGLLTEYLEDPTGYGRIIRNSSGFVESIVEQKDASEDELKIKEINTGIICAPTSNLLTWLTEIKNDNAQGEYYLTDIIKFANRDGVPIIATQAYTQFETAGVNSRLQLAGLEEQYQKNKAYELLDDGVSIVDPSKFMLRGKLSCESDVTIDIGCIFEGDVEIKSGAHIGPYCIIKDSIIGSNARIEAFSHIDGATLSNDVVVGPYARLRPGTNLKDHSHVGNFMELKKTTLGSYSKANHLSYLGDATIGDRVNVGAGTITCNYDGVNKFQTIIEDEAFIGSDTQLVAPVTVGKGATVAAGTTVMKDVPASQLVLNKKTQDVISGWQRPQKKKDS
>NZ_CP021060.1|WP_013521867.1|65496_66327_-|NUDIX-domain-containing-protein
MHLPDLKDLKKSLNDRASLPPIEGSHDLIFNDHHIGFVHPSIMEDFIGFAYVKFSSGKFKIDMHKELLGLADPELFFAYKCQYFNQLAQYLRNKGHAKHWRNEQLSIWSGETEIAHVERAVSRELGIMTKAVHVNAWTREKKIYLSLRAPTKSTDPNKWDTLVGGLVSANESLEYALMRESVEEAGLHLEPIPLIIPLHYITTMNRPLIEGYQVEEVFNADYLIPDDVHLENQDGEVTKIEAFSIDEIIEKINNDEVTLEASIVLLDSIERIAKQV
>NZ_CP021060.1|WP_013521868.1|66359_67238_-|RNA-polymerase-sigma-factor-RpoH
MSNQSFALQTHKSMDLINPSALGTIEAYIQEVNRIPILTAEQERDYAERLQKSGDLKAAQALILPHLRLVVSVARQYLGYGLPHADLIQEGNIGLMKAVKRFDVSRGVRLVTFAMHWIKAEIHEYVIRNWRLVKIATTKAQRKLFFNLNSLRPEGKSLDNDDIVGIAKKLNVRPEDVVEMEKRMSGHDIALDTLMDEDDDYAPIQYLADDEAYEPENVMLAQEHDKLENQGLKSALDQLDDRSRHIIESRWLSEDKPTLHDLAAQYNVSAERIRQIENAAIKKMRSYLEDYV
>NZ_CP021060.1|WP_054393505.1|68221_69595_-|ATP-dependent-RNA-helicase-DbpA
MQNFSELPLSESQISNLSSLGFTQMRPVQARSLPHILEGSDVRTLAKTGSGKTLAFGLGIIQKINPSFFACQGLVLTPTHELADQVAQEIRKLARALPNIKVLTLCGGVALRPQIESLKHGAHIIVGTPGRILDLIQRGDLDLSKVKVFVLDECDRMLDMGFFDDIGEISKATPLRKQTLLFSATFPEHIKKISEGFQRNPVHIELIEEEKVPTNLDHIFFKTSDSERFAHSVQILKHYQPISTLAFCNTRTQCEKLSSFLNEQNISSKFLHGEMEKREREDVLLQFSNKSLSVLVATDVAARGLDIEGLDAVLNIELSPNVPTHIHRIGRTGRHSDRGLVFNLVTPEEMYRFDRIDAQIPLESKWEKIPSNTKKRNLVAPMRTISIKGGKKDKLRKVDLIGAMTKHLQIPFEDIGKIHVADFVSFIAVKHENAEDILNRMQEIPIKNRSWMMRLMD
>NZ_CP021060.1|WP_014840009.1|69643_70600_+|methionyl-tRNA-formyltransferase
MKIVFAGTPDFARVAYEALLESGHEIPLVMTQPDRPAGRGMKLQSSPVKVSALNHNSKVIQPVSLRLTVGKLGPQAVEQATEAKRELENIKPDVMVVAAYGLILPQWVLDLPRYGCLNIHASLLPRWRGAAPIQRAIEAGDAETGISIMQMDVGLDTGDVLLMKSLAIDGMNSSQLHDKLAVLGGDAITEVMSNIESFRRTPKKQPEEGITYAEKIAKSEGLLDWNEETEILERKIRAFNPFPGVTLALPNLEVKVWKSAVSDLKKPADAIPGQVLKISSEGIEVATKDGVLRLLELQKAGAKKQDVATFINGWHLDG
>NZ_CP021060.1|WP_013521872.1|70592_71870_+|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB
MAEQIALSTLLVSSSKLVRDVMGGQSTSDLLPKVDITIRAGVHAISFHALRHYGKALSIANKLLTKSPPNSLFLNLLCVSLSLLIVDDSELFDEQPVYKEFVVLDESVNACSKMPKTASFKGLLNACLRNFLRNKTELIRGLNIYENLSYPQWWYEKLKNSYPNTYLEVLNADKKYAPINLRINTRKISRADYLKLLSTQNIEFEEIGESGIKLSKSVNIATLPGYDEGLFSVQDIGAQNAAFQLPIKNGDYVLDACSAPGGKAAHLLERFDIDLLCMDADKERLERVKENLNRLDLLGQNVHLLEGDASLKDWWDGRKFDAILADVPCTGSGVVRRHPDIKWLRKEVDVIKTVELQRKIIINLWDMLKFGGYLLYVTCSVFKEEGELQAQYFTTKLEGIERLPSLGHIFPPKQDGFFYALFKKN
>NZ_CP021060.1|WP_095681267.1|71835_72486_+|DUF4390-domain-containing-protein
MDFSMHFLRKIKFAMYASSLAICLVIASFTFFNKSVYAQTEAISTPAETEAPIKSSAVFTEINPTKIDNYSLSLSTKINLQLDSELRQALSKGLPLYFTLDARFYQKRGHWFDKLIAQQSLTWMIHYNVLLREWRIERGPYVAKGYSLEDAIDLITTNDDWKILLNEPMDSSKKYYGKVRLRLDTSLLSRPFQISAFSDSSAWSFSSSWAKFQIHH
>NZ_CP021060.1|WP_054393506.1|72458_74780_+|HAMP-domain-containing-protein
MGKISNSSLSRTKKFLRNLLRFSLIVAVILSAVLLYFLFQSSGNESRFENRFDLLMLFNATLAIALFIWLLSLIIGIVKQVKQKRFGARLTSKLIFFFTLIAIVPGVVVYVLSTQYVSRYIESWFNNKVDSALSSGIYLGQSSLDAMIIDQLSNARNLSDRLYNVPEDQLSNALNSLRENFSSFDLLVFSSGGNRVIAFSSSTFGSLLPKMPPNNVMSQLRISRQYASAEESLAVDESGMQAPQYILRVIVPIFSSDNRLDGSIASLREPNWLQLTRLVPASMSENLKAVQTGYQNYQELNLSRQGILKIFSITMIMALLLTTFASLAIVLWMARRLVEPLLTLAEGTQAVAAGDYRSIPDSNQSDELGQLSRSFNLMVAQLTEARSQVDRHRRSIEQSNDFLEGVLAGLTNGVIVLDSEFRITRVNKGAQNILHEDLDLMIGQPMQDNLSEFGRLVKSAFVSHAAVGSLRSYWQEQIELDINDEGEDKKITLLLRGTKLMTPNGINYLLVFDDISEVISLNRSVAWGEVARRLAHEIKNPLTPISLSAERIKYKLIDKLDEDDAKFLDRLTTTIVNQVVSLKTMVDDFREYARTPPAQFQSVNVEDLLMDIAHLYGWAAEGYKIEEESLDIAPIDVSRQIKLDIEPDMPLVLADPTQLRQVFNNLLSNSRDAMENMELSGSEPGVTIRACAVQLEDGELGVKVEFLDRGPGFPAQILQKAFEPYVTTKAHGTGLGLAIVRKIIDEHQGKIDITNRTEGGAKISILLTRIVKN
>NZ_CP021060.1|WP_013521875.1|74864_75596_+|response-regulator
MAKILVVDDEIGIRELLQEILYEQGHSVDLAANVAEARAARLSERPDLVLLDIWMPDADGVSLLKEWSSQGLLDMPVIMMSGHATLDTAIEATRIGAADFLEKPITLNKLMTTVRQVLQRPIIRPGAVPVRPTHYTTMPSAPQVHHHTTSYHPDVIQPRQIAQPQMVSSQADDPTKTGYLGSLSLNKPLRTVRDEFERIYFEYHLEKENHSMTRVSERTGLERTHLYRKLRQLGVDSRKNRNN

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Crispr_ID: NZ_CP021060_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021060_2

215732-217499

TypeI-F

I-F

Consensus_repeat	Method
GTTAACTACCGTATAGGTAGTTTAGAAA	PILER-CR
GTTAACTACCGTATAGGTAGTTTAGAAA	CRISPRCasFinder
GTTAACTACCGTATAGGTAGTTTAGAAA	CRT

29 spacers

cas6f,cas7f,cas5f,cas8f,cas1

The CRISPR arrays of NZ_CP021060_2

>merge|NZ_CP021060|2|215732-217499|PILER-CR,CRISPRCasFinder,CRT
GTTAACTACCGTATAGGTAGTTTAGAAAACATTGTTAGTAACATTACCAACGTTAGTAATGTTAACTACCGTATAGGTAGTTTAGAAATATTCCCCATTCCATCCGTTGAAAATTTGGCGGTTAACTACCGTATAGGTAGTTTAGAAACAATTGCCCCTGCTTGAATATGCCCTGCGGTTGTTAACTACCGTATAGGTAGTTTAGAAAATTTTTGGGTGCGAAACCATTTACCGATTTTGGTTAACTACCGTATAGGTAGTTTAGAAATCAATCGTGAAAAGGTGCGATATTTTTTTCCAGTTAACTACCGTATAGGTAGTTTAGAAAGTAAGTTGCAAATAAGGATTCATTGAATACATGTTAACTACCGTATAGGTAGTTTAGAAATGTAGAGGCACTAATCCCCACATTGGCAGTATGTTAACTACCGTATAGGTAGTTTAGAAAAACAGTGTAGAGTCTTTGGACGGTGCGAGTAGGTTAACTACCGTATAGGTAGTTTAGAAATTGTGAGCCTTAATACATCTTTACGAGATATAGTTAACTACCGTATAGGTAGTTTAGAAAGAAATAATGCCGTATGAAACAAATTTCCCCACGTTAACTACCGTATAGGTAGTTTAGAAAGATCTATCGTTATCCCTTTGTTTGCCCTTAGAGTTAACTACCGTATAGGTAGTTTAGAAATTAAAAACGTAAAACTACCTATACAACGTATGGTTAACTACCGTATAGGTAGTTTAGAAAATATTCGTCTGAATTGAAGTATATACGTTTTAGTTAACTACCGTATAGGTAGTTTAGAAAAATACTTGCGTGCTTGATAACGGTAGGTTGTCGTTAACTACCGTATAGGTAGTTTAGAAAATTTCGGAAGGGTTACATTGTTAAGTCTTGGGGTTAACTACCGTATAGGTAGTTTAGAAATCGATACCAACATATACACAGAAGAACAAAAAGTTAACTACCGTATAGGTAGTTTAGAAACATTATGGCACTAGCCCTTATTGTTGGGGTAAGTTAACTACCGTATAGGTAGTTTAGAAACCCAACCGCGCTGCAAAAGATAGAGAATTGACGTTAACTACCGTATAGGTAGTTTAGAAAAGCAGGATGTAAGAATTGCAGAGCTTACTATAGTTAACTACCGTATAGGTAGTTTAGAAAATATTTAAAAAGTAAAGGTTTTGATGAGGCGAGTTAACTACCGTATAGGTAGTTTAGAAAGTGTTGTTATCAACTCTAACAACATATGGCTCGTTAACTACCGTATAGGTAGTTTAGAAAAAACAGCTGTTAATAGACCGTATACCCCGTTTGTTAACTACCGTATAGGTAGTTTAGAAATTCAAACAGGGTCAGTAACAGCACAGAAACTAGTTAACTACCGTATAGGTAGTTTAGAAACTACGCATACCAAGCGAAAATATGAAAGGTGCGTTAACTACCGTATAGGTAGTTTAGAAAGTTAGTTGCAAGTTTAGATATGTTTCCTGGGAGTTAACTACCGTATAGGTAGTTTAGAAAAAGTGAAAGAATGAAGGGAATAAAACATCATAGTTAACTACCGTATAGGTAGTTTAGAAAATATCGCTCATCACATAAGGGCATCCAGTAGAGTTAACTACCGCATAGGTAGTTTAGAAATCTACTCAAGAAAACCCGAAAAGCACTCTTAAGTTAACTACCGCATAGGTAGTTTAGAAAATTCAATTATCCCGTCAATATCGATTCGGTTAGTTAACTACCGCATAGGTAGTTTAGAAA

>NZ_CP021060|2|1|215732-217499|PILER-CR
GTTAACTACCGTATAGGTAGTTTAGAAA	ACATTGTTAGTAACATTACCAACGTTAGTAAT
GTTAACTACCGTATAGGTAGTTTAGAAA	TATTCCCCATTCCATCCGTTGAAAATTTGGCG
GTTAACTACCGTATAGGTAGTTTAGAAA	CAATTGCCCCTGCTTGAATATGCCCTGCGGTT
GTTAACTACCGTATAGGTAGTTTAGAAA	ATTTTTGGGTGCGAAACCATTTACCGATTTTG
GTTAACTACCGTATAGGTAGTTTAGAAA	TCAATCGTGAAAAGGTGCGATATTTTTTTCCA
GTTAACTACCGTATAGGTAGTTTAGAAA	GTAAGTTGCAAATAAGGATTCATTGAATACAT
GTTAACTACCGTATAGGTAGTTTAGAAA	TGTAGAGGCACTAATCCCCACATTGGCAGTAT
GTTAACTACCGTATAGGTAGTTTAGAAA	AACAGTGTAGAGTCTTTGGACGGTGCGAGTAG
GTTAACTACCGTATAGGTAGTTTAGAAA	TTGTGAGCCTTAATACATCTTTACGAGATATA
GTTAACTACCGTATAGGTAGTTTAGAAA	GAAATAATGCCGTATGAAACAAATTTCCCCAC
GTTAACTACCGTATAGGTAGTTTAGAAA	GATCTATCGTTATCCCTTTGTTTGCCCTTAGA
GTTAACTACCGTATAGGTAGTTTAGAAA	TTAAAAACGTAAAACTACCTATACAACGTATG
GTTAACTACCGTATAGGTAGTTTAGAAA	ATATTCGTCTGAATTGAAGTATATACGTTTTA
GTTAACTACCGTATAGGTAGTTTAGAAA	AATACTTGCGTGCTTGATAACGGTAGGTTGTC
GTTAACTACCGTATAGGTAGTTTAGAAA	ATTTCGGAAGGGTTACATTGTTAAGTCTTGGG
GTTAACTACCGTATAGGTAGTTTAGAAA	TCGATACCAACATATACACAGAAGAACAAAAA
GTTAACTACCGTATAGGTAGTTTAGAAA	CATTATGGCACTAGCCCTTATTGTTGGGGTAA
GTTAACTACCGTATAGGTAGTTTAGAAA	CCCAACCGCGCTGCAAAAGATAGAGAATTGAC
GTTAACTACCGTATAGGTAGTTTAGAAA	AGCAGGATGTAAGAATTGCAGAGCTTACTATA
GTTAACTACCGTATAGGTAGTTTAGAAA	ATATTTAAAAAGTAAAGGTTTTGATGAGGCGA
GTTAACTACCGTATAGGTAGTTTAGAAA	GTGTTGTTATCAACTCTAACAACATATGGCTC
GTTAACTACCGTATAGGTAGTTTAGAAA	AAACAGCTGTTAATAGACCGTATACCCCGTTT
GTTAACTACCGTATAGGTAGTTTAGAAA	TTCAAACAGGGTCAGTAACAGCACAGAAACTA
GTTAACTACCGTATAGGTAGTTTAGAAA	CTACGCATACCAAGCGAAAATATGAAAGGTGC
GTTAACTACCGTATAGGTAGTTTAGAAA	GTTAGTTGCAAGTTTAGATATGTTTCCTGGGA
GTTAACTACCGTATAGGTAGTTTAGAAA	AAGTGAAAGAATGAAGGGAATAAAACATCATA
GTTAACTACCGTATAGGTAGTTTAGAAA	ATATCGCTCATCACATAAGGGCATCCAGTAGA
GTTAACTACCGCATAGGTAGTTTAGAAA	TCTACTCAAGAAAACCCGAAAAGCACTCTTAA
GTTAACTACCGCATAGGTAGTTTAGAAA	ATTCAATTATCCCGTCAATATCGATTCGGTTA
GTTAACTACCGCATAGGTAGTTTAGAAA

>NZ_CP021060|2|2|215732-217499|CRISPRCasFinder
GTTAACTACCGTATAGGTAGTTTAGAAA	ACATTGTTAGTAACATTACCAACGTTAGTAAT
GTTAACTACCGTATAGGTAGTTTAGAAA	TATTCCCCATTCCATCCGTTGAAAATTTGGCG
GTTAACTACCGTATAGGTAGTTTAGAAA	CAATTGCCCCTGCTTGAATATGCCCTGCGGTT
GTTAACTACCGTATAGGTAGTTTAGAAA	ATTTTTGGGTGCGAAACCATTTACCGATTTTG
GTTAACTACCGTATAGGTAGTTTAGAAA	TCAATCGTGAAAAGGTGCGATATTTTTTTCCA
GTTAACTACCGTATAGGTAGTTTAGAAA	GTAAGTTGCAAATAAGGATTCATTGAATACAT
GTTAACTACCGTATAGGTAGTTTAGAAA	TGTAGAGGCACTAATCCCCACATTGGCAGTAT
GTTAACTACCGTATAGGTAGTTTAGAAA	AACAGTGTAGAGTCTTTGGACGGTGCGAGTAG
GTTAACTACCGTATAGGTAGTTTAGAAA	TTGTGAGCCTTAATACATCTTTACGAGATATA
GTTAACTACCGTATAGGTAGTTTAGAAA	GAAATAATGCCGTATGAAACAAATTTCCCCAC
GTTAACTACCGTATAGGTAGTTTAGAAA	GATCTATCGTTATCCCTTTGTTTGCCCTTAGA
GTTAACTACCGTATAGGTAGTTTAGAAA	TTAAAAACGTAAAACTACCTATACAACGTATG
GTTAACTACCGTATAGGTAGTTTAGAAA	ATATTCGTCTGAATTGAAGTATATACGTTTTA
GTTAACTACCGTATAGGTAGTTTAGAAA	AATACTTGCGTGCTTGATAACGGTAGGTTGTC
GTTAACTACCGTATAGGTAGTTTAGAAA	ATTTCGGAAGGGTTACATTGTTAAGTCTTGGG
GTTAACTACCGTATAGGTAGTTTAGAAA	TCGATACCAACATATACACAGAAGAACAAAAA
GTTAACTACCGTATAGGTAGTTTAGAAA	CATTATGGCACTAGCCCTTATTGTTGGGGTAA
GTTAACTACCGTATAGGTAGTTTAGAAA	CCCAACCGCGCTGCAAAAGATAGAGAATTGAC
GTTAACTACCGTATAGGTAGTTTAGAAA	AGCAGGATGTAAGAATTGCAGAGCTTACTATA
GTTAACTACCGTATAGGTAGTTTAGAAA	ATATTTAAAAAGTAAAGGTTTTGATGAGGCGA
GTTAACTACCGTATAGGTAGTTTAGAAA	GTGTTGTTATCAACTCTAACAACATATGGCTC
GTTAACTACCGTATAGGTAGTTTAGAAA	AAACAGCTGTTAATAGACCGTATACCCCGTTT
GTTAACTACCGTATAGGTAGTTTAGAAA	TTCAAACAGGGTCAGTAACAGCACAGAAACTA
GTTAACTACCGTATAGGTAGTTTAGAAA	CTACGCATACCAAGCGAAAATATGAAAGGTGC
GTTAACTACCGTATAGGTAGTTTAGAAA	GTTAGTTGCAAGTTTAGATATGTTTCCTGGGA
GTTAACTACCGTATAGGTAGTTTAGAAA	AAGTGAAAGAATGAAGGGAATAAAACATCATA
GTTAACTACCGTATAGGTAGTTTAGAAA	ATATCGCTCATCACATAAGGGCATCCAGTAGA
GTTAACTACCGCATAGGTAGTTTAGAAA	TCTACTCAAGAAAACCCGAAAAGCACTCTTAA
GTTAACTACCGCATAGGTAGTTTAGAAA	ATTCAATTATCCCGTCAATATCGATTCGGTTA
GTTAACTACCGCATAGGTAGTTTAGAAA

>NZ_CP021060|2|1|215732-217499|CRT
GTTAACTACCGTATAGGTAGTTTAGAAA	ACATTGTTAGTAACATTACCAACGTTAGTAAT
GTTAACTACCGTATAGGTAGTTTAGAAA	TATTCCCCATTCCATCCGTTGAAAATTTGGCG
GTTAACTACCGTATAGGTAGTTTAGAAA	CAATTGCCCCTGCTTGAATATGCCCTGCGGTT
GTTAACTACCGTATAGGTAGTTTAGAAA	ATTTTTGGGTGCGAAACCATTTACCGATTTTG
GTTAACTACCGTATAGGTAGTTTAGAAA	TCAATCGTGAAAAGGTGCGATATTTTTTTCCA
GTTAACTACCGTATAGGTAGTTTAGAAA	GTAAGTTGCAAATAAGGATTCATTGAATACAT
GTTAACTACCGTATAGGTAGTTTAGAAA	TGTAGAGGCACTAATCCCCACATTGGCAGTAT
GTTAACTACCGTATAGGTAGTTTAGAAA	AACAGTGTAGAGTCTTTGGACGGTGCGAGTAG
GTTAACTACCGTATAGGTAGTTTAGAAA	TTGTGAGCCTTAATACATCTTTACGAGATATA
GTTAACTACCGTATAGGTAGTTTAGAAA	GAAATAATGCCGTATGAAACAAATTTCCCCAC
GTTAACTACCGTATAGGTAGTTTAGAAA	GATCTATCGTTATCCCTTTGTTTGCCCTTAGA
GTTAACTACCGTATAGGTAGTTTAGAAA	TTAAAAACGTAAAACTACCTATACAACGTATG
GTTAACTACCGTATAGGTAGTTTAGAAA	ATATTCGTCTGAATTGAAGTATATACGTTTTA
GTTAACTACCGTATAGGTAGTTTAGAAA	AATACTTGCGTGCTTGATAACGGTAGGTTGTC
GTTAACTACCGTATAGGTAGTTTAGAAA	ATTTCGGAAGGGTTACATTGTTAAGTCTTGGG
GTTAACTACCGTATAGGTAGTTTAGAAA	TCGATACCAACATATACACAGAAGAACAAAAA
GTTAACTACCGTATAGGTAGTTTAGAAA	CATTATGGCACTAGCCCTTATTGTTGGGGTAA
GTTAACTACCGTATAGGTAGTTTAGAAA	CCCAACCGCGCTGCAAAAGATAGAGAATTGAC
GTTAACTACCGTATAGGTAGTTTAGAAA	AGCAGGATGTAAGAATTGCAGAGCTTACTATA
GTTAACTACCGTATAGGTAGTTTAGAAA	ATATTTAAAAAGTAAAGGTTTTGATGAGGCGA
GTTAACTACCGTATAGGTAGTTTAGAAA	GTGTTGTTATCAACTCTAACAACATATGGCTC
GTTAACTACCGTATAGGTAGTTTAGAAA	AAACAGCTGTTAATAGACCGTATACCCCGTTT
GTTAACTACCGTATAGGTAGTTTAGAAA	TTCAAACAGGGTCAGTAACAGCACAGAAACTA
GTTAACTACCGTATAGGTAGTTTAGAAA	CTACGCATACCAAGCGAAAATATGAAAGGTGC
GTTAACTACCGTATAGGTAGTTTAGAAA	GTTAGTTGCAAGTTTAGATATGTTTCCTGGGA
GTTAACTACCGTATAGGTAGTTTAGAAA	AAGTGAAAGAATGAAGGGAATAAAACATCATA
GTTAACTACCGTATAGGTAGTTTAGAAA	ATATCGCTCATCACATAAGGGCATCCAGTAGA
GTTAACTACCGCATAGGTAGTTTAGAAA	TCTACTCAAGAAAACCCGAAAAGCACTCTTAA
GTTAACTACCGCATAGGTAGTTTAGAAA	ATTCAATTATCCCGTCAATATCGATTCGGTTA
GTTAACTACCGCATAGGTAGTTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021060.1\|WP_015555671.1\|219867_220581_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021060.1\|WP_013522010.1\|228837_229104_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP021060.1\|WP_054393549.1\|213036_213906_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP021060.1\|WP_015555713.1\|213915_214941_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP021060.1\|WP_054393546.1\|205876_207604_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237969
NZ_CP021060.1\|WP_013522004.1\|226086_227070_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF	unknown	unknown	gnl\|CDD\|185037
NZ_CP021060.1\|WP_013522012.1\|229567_230101_-\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP021060.1\|WP_054393550.1\|214937_215603_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP021060.1\|WP_044962102.1\|204223_204949_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP021060.1\|WP_054393554.1\|223234_224155_+\|oligopeptide-ABC-transporter-permease-OppB	unknown	unknown	gnl\|CDD\|181886
NZ_CP021060.1\|WP_015555717.1\|207608_208565_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP021060.1\|WP_054393553.1\|221538_223173_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|185059
NZ_CP021060.1\|WP_013522002.1\|224164_225082_+\|oligopeptide-ABC-transporter-permease-OppC	unknown	unknown	gnl\|CDD\|185304
NZ_CP021060.1\|WP_013522011.1\|229116_229425_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP021060.1\|WP_054393548.1\|211802_213044_+\|CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP021060.1\|WP_054393551.1\|218987_219788_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|226145
NZ_CP021060.1\|WP_014840095.1\|200873_201944_+\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|234644
NZ_CP021060.1\|WP_013522003.1\|225086_226097_+\|oligopeptide-ABC-transporter-ATP-binding-protein-OppD	unknown	unknown	gnl\|CDD\|181888
NZ_CP021060.1\|WP_013521988.1\|202173_204216_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP021060.1\|WP_015555721.1\|199806_200829_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|376971

Protein	Function_ID	Function_description	E-value
NZ_CP021060.1\|WP_013522010.1\|228837_229104_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	5.90396e-48
NZ_CP021060.1\|WP_054393549.1\|213036_213906_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	3.36892e-84
NZ_CP021060.1\|WP_015555713.1\|213915_214941_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	7.6316e-145
NZ_CP021060.1\|WP_054393546.1\|205876_207604_+\|U32-family-peptidase	gnl\|CDD\|237969	PRK15452, PRK15452, putative protease; Provisional.	1.55653e-168
NZ_CP021060.1\|WP_013522004.1\|226086_227070_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF	gnl\|CDD\|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	0
NZ_CP021060.1\|WP_013522012.1\|229567_230101_-\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	3.67618e-16
NZ_CP021060.1\|WP_054393550.1\|214937_215603_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.26605e-42
NZ_CP021060.1\|WP_044962102.1\|204223_204949_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	9.33585e-64
NZ_CP021060.1\|WP_054393554.1\|223234_224155_+\|oligopeptide-ABC-transporter-permease-OppB	gnl\|CDD\|181886	PRK09471, oppB, oligopeptide ABC transporter permease OppB.	0
NZ_CP021060.1\|WP_015555717.1\|207608_208565_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	2.40668e-156
NZ_CP021060.1\|WP_054393553.1\|221538_223173_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP021060.1\|WP_013522002.1\|224164_225082_+\|oligopeptide-ABC-transporter-permease-OppC	gnl\|CDD\|185304	PRK15406, PRK15406, oligopeptide ABC transporter permease OppC; Provisional.	0
NZ_CP021060.1\|WP_013522011.1\|229116_229425_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	5.52044e-53
NZ_CP021060.1\|WP_054393548.1\|211802_213044_+\|CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	5.89172e-37
NZ_CP021060.1\|WP_054393551.1\|218987_219788_+\|amidohydrolase-family-protein	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.53273e-47
NZ_CP021060.1\|WP_014840095.1\|200873_201944_+\|uroporphyrinogen-decarboxylase	gnl\|CDD\|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP021060.1\|WP_013522003.1\|225086_226097_+\|oligopeptide-ABC-transporter-ATP-binding-protein-OppD	gnl\|CDD\|181888	PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional.	0
NZ_CP021060.1\|WP_013521988.1\|202173_204216_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP021060.1\|WP_015555721.1\|199806_200829_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|376971	pfam02954, HTH_8, Bacterial regulatory protein, Fis family.	5.23537e-07

>NZ_CP021060.1|WP_054393550.1|214937_215603_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MKYYIELTLIDQNEVPLNNIMNHVFSSIHIQIVNLQNSNMNKILPIGISFPNYVYEKEEGTNLNNKFHSTLGNKIRLFSESEENLVNLNLKTKVRNLRDYIHITNVKSVPKNIQGYASFFRHHVKSNPFTVAKRLCLRKNKGNVNLDDLKDINKLALQIKIEHTNLPYVCLSSHSSKHRFRLFIDRELVPLSVEGKFNSYGLAVKSNLVHGTNSMGTVPLF
>NZ_CP021060.1|WP_015555713.1|213915_214941_+|type-I-F-CRISPR-associated-protein-Csy3
MALPSVLAFEKKIVPSDGLLFGSSWDSPEKLIPLKIIEKSIRGTISHFIETESKDSLKLIANVENANLQTIDTCYLPFDCDTLVMKFTLKFLGKISTPSSCNNPEFSTNLQNKVKAIEEKDISELSTRYAINIANSRYLWRNRLGAEEIKVNIKAIFVSKSGSKSESKNFEFDSFDFAMNSFDTEDEHIKDLARLISLAFLDKLHYLILEVECRAKIGSSQEVYPSEELVPNKEDTKKLKNTKSKILFEILGQAGMHSQKIGNAIRTIDTWYPNYNDFNFPIAIEPYGSVTTRSIALRNNRSNFYDLFKKFLDGKKIEKNDELYILAILIRGGILGGKKQS
>NZ_CP021060.1|WP_054393549.1|213036_213906_+|type-I-F-CRISPR-associated-protein-Csy2
MTRTFLIIPRVRVINANAMSAPFIIGLPSITSFMGFTHKLQLDIQEEINRDIRFLRTGISIHSFNLRAYKEGSRNLLSITRNPLKKDGTSPSFVEEAKCNFEVSIVIEVSGLPVSDNDKLVSRINNSLLGYKVSSGDLLSFKKPFIYSIDLDKYEEVKGLLKKLMLGYVLTERKDLIIKRNNEEKRKNSLDSLLDYLKVFVHEDKDNIKNHFKIESGWLVPITVGYHGLTTPEENINECREPKFNHVFCESLVTLGEFKLPTTINNIDDFLWKYAYESEKNYFYCTTHN
>NZ_CP021060.1|WP_054393548.1|211802_213044_+|CRISPR-associated-protein-Csy1
MDQIEVYREIIEQFFDSDRKYKDLERSHRFKNLVNKFAEDAKHIVATKYPSKFTHPDSKVNIKKIDTQHFDNDGYVREGNCGELHYKTKIDYVTSASYLPIVKFYEIVLEKETNFKLYEYLLSLRQELIDNNRLPEKNLFREFDDATNIVKKLLIPFESSTPNETSPLLKQLLFPIRSKEGIDEYVNVSVLSNSPLMCQLNSVLSKNSKSDNKQKDEEKQEQQEDFYIPNLVKYKLGGGHPKNISSINHSKQGIWYVLPCLPPSLDNKYIRKPFFSFFKECLSDKYSYGTVKKLEKLTTTDINNIHIRTAIDNYLDKLINMSIEKALIIRTCKAGWSDNKKFSSLSAIEKEFLDSKYEKISLSNVNLLAHELTKWLINRIETNTLIKLEDSEFLYIKKKFLNQITLNWEVFND
>NZ_CP021060.1|WP_015555717.1|207608_208565_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MEVLTDLKAIMHSKRANIYYLEHCRVMQKDGRVLYLTEEKKQNSYWNIPIANTTVILLGTGTSITQAAVRMLASAGVLIGFCGGGGTPLFSACDVEWLTPQSEYRPTQYVQKWLEFWFIEEKRLKVAKFFQLKRIDFINYVWGRDNLLNDNGIGNDDFEIEQALETTSKNISRAPDAEHLLSLEAQLTKKLYSFVSKKCGLNDFYRDHSGNTTENIFLNHGNYLAYGLGACTAWVLGIPHGFAVMHGKTRRGALVFDIADLVKDAIVLPNAFISTKLEHFENDFRQTILNKFIEHRALDYMFEIVEFVCSEEFWRTCK
>NZ_CP021060.1|WP_054393546.1|205876_207604_+|U32-family-peptidase
MKKPELLLPAGGLERMRTAFFFGADAVYAGQPRYSLRARNNEFVRFEKMEQAINEAHALGKKFYVTSNLLPHNSKLRTYLDDLAPIMELKPDALIMADPGLIMKVKERWPDAVIHLSVQANTTNYWGVQFWQRMGISRIILSRELSLDEIEEIRQECPDMELEVFVHGALCIAYSGRCLLSGYFNQRDPNQGTCTNSCRWDYKVLPTVESDAGDARLAPGAERFGFGGGSGSAAGLCSSSNEACSTGGGVCSTSVGNSPNKPYSPGGAGAGGAYSAGVSRSAGGVCSTGGRGAADLAYSTGGVVSPVSRNSTGGSSSSEFRVPDAGLEGFDFNAMREEADSRFASVGGAPRHPLADNVYLLEEGNRPGQYMPIMEDDHGTYIMNSKDLRAIEQVERLVKIGVDSLKVEGRTKSMYYVGRVANAYRRAIDDAVAGRPFNPELLADLQNVANRGYTPGFLERHQTQDYQNYLHGYSVSRLSQFAGVVRDVDDDGWATVEVKNRFRVGDKLEVIHPSGNMVIVLEAMEIDGEPTDLAPGNGREARIPGMHGKKGALLARLLSEGERERLVKLTGVSGE
>NZ_CP021060.1|WP_044962102.1|204223_204949_+|fumarylacetoacetate-hydrolase-family-protein
MSEIKTVLPLPKPATIAIYGRKERFPVGRIFCIGRNYQEHAAEMSYGAVDKSQTDPIFFIKSACHVAHFESGEVGKLPYTKGTQNLHHEVELVLAFGNDIADGASKEEIQDAIYGYCVGLDMTRRDFQSISKKNGFPWDGAKDFEDSVILGELTEKSSLANPWMDDVGIKLSVNDEIRQDGDTSDLIWKIDECVSYLSKFYNLRAGDLIMTGTPSGVGPVVRGDVLKGQIAGLQDLVVEYI
>NZ_CP021060.1|WP_013521988.1|202173_204216_+|primosomal-protein-N'
MAKSWARIALDVPLFSFFDYIIPSGMKVERGQRVIVDFGKKELIGVVVNILSSCEIPEDKQKPLKEVIDDLPPFSEKWLKLCEFAANYYIRPVGEVILPVIAPPLRNINSYRGKTKTSPVERLDKRKIKIDSEYSQNTAPELNDDQLAAANYIKSIKGYETVVLHGITGSGKTEVYLNVAEHILSTGKQVLFLVPEINLTPQFEQLIRHRFSALYGQDAVVTMHSGLSDGQRLKSWVRMCRQEAKILVGTRMSIFSPFENIGLIIVDEEHDASYKQQDGLRYSARDLAIWRANQLEVPVVLGSATPSLETWRNMQTGRYKLLSLKKRASSGNPPQIHILNTKKLKSINGIAQPLFDLISKKLSDGEQVMIYLNRRGFAPVLRCGSCGWVSTCPNCSVHTVMHRNIKRDLNILQCHHCGFRSHVPLCCPDCGEVDLSALGYGTQKIEEGLINHFPDAKILRIDADSTRLKGSAERLFTQATEGHVDIIIGTQMLAKGHDFKKLSLVAVLNSDLMLYNADFRSSERLFSQLLQVAGRAGRHIKDAKVVVQTEFDRHPVYDALIAQDYEQFSQSALEERKSATLPPYSYQILFTAQSKKILNALEFLEQVASIGANAKYEDVRIYDPVPLQIVRVANVERAQLLFESQSRTRLHSLVYEILPHIDNIKSSKISYHIEVDPLTI
>NZ_CP021060.1|WP_014840095.1|200873_201944_+|uroporphyrinogen-decarboxylase
MNDTFLRALLRQKCEYTPIWLMRQAGRYLPEYRATREKAGSFLGLAKSPEFACEVTLQPIDRFNLDAAILFSDILMVPDAMGLGLDFVAGEGPKFANPIRDEEDVKNLKVPDMNELRYVFDAVKLIRGQLQDRVPLIGFAGSPWTIACYMIEGCGSKEYRQIKSMMYSRPELLHSVLEICAQSTAQYLIEQVKAGAQAIMIFDSWGGVLAHGYYQEFSLKYMRSVLDTLRGFLNSNEHKGVTVPVIAFTKGGGLWLEDMVDAGFDALGLDWTVGLSDARRRVQDRVALQGNLDPMALFSDEKSVRAQARNVIDDFGPVASGGHVFNLGHGISQFTNPDIVEALVDEVHNYSKSKHL
>NZ_CP021060.1|WP_015555721.1|199806_200829_+|helix-turn-helix-domain-containing-protein
MRETLDCAVLYTDHFKAQATSLVNLTDKTKRVQFKEFNLGDLTNSNLPSYVVNDYELPHPNTLRELGPLLHRYDVVILPVNQKVLIWLRVMLSNCPDFPTPVMILCDDVHPTALPDLAKLGVVDFISFEDSTPIIMARIKSAIERYSYFRQREIISINRLMAEVDDQNREPKYTSASIREGLAARKNALKELEYTESVGSYTLYNFSDSSSSLNYEKSLIGQPSSIETRKISFVPPFSHLELDDADVKPPLRKSPKRKIITANITTVESTPSEQESIKDDDSFKDAKDKIVSAFEKEFIINALIQSKGNIAQAAKRSGKNRRSFWELMRKHEISAKQFRH
>NZ_CP021060.1|WP_054393551.1|218987_219788_+|amidohydrolase-family-protein
MVIDTHAHAFLTSLKSVSDARYVPHYDASLAMYLDQLDSNGVEKGVLVQPSFLGTDNSYLIECLRNSDRLRGIVVVDPVIEIERLKEFDEYGVVGVRQNLIGKQIPEFQSLVWHNHLAALETLGWQLEFQRNITDLPPILEALKGYNFNIVIDHLGCPNKENVPGSSAVDEIVNIAKRKKNLWFKVSGWYRAHVDENHFEFYASLFEYLVEKLGPECFVWGSDWPHTNFEHEINYKKSLEFINRLIKDDHLKEKILFDNPKRLFKF
>NZ_CP021060.1|WP_015555671.1|219867_220581_-|hypothetical-protein
MKNQFILILSCLLVACSTTDTTPVNYQSPSFDYVEPVPSPPSEPVVPQKSYAELVQESYDLATQNWDNAGCNDTYLMFSTITYSDQINFSKSELAQYRKNLLQCLDLYWDLNYYESLVKGRFNSDQLAFHNGFKLYKTIANNIINGKVNKRNAAHQINRVYSSTSSLASSEIGFINGQIAEQKNDMKFMMMLNEQARQGQLNRMHQTQLMNQLDDIVNRSRTTSCTSYGNTIDCQTY
>NZ_CP021060.1|WP_054393553.1|221538_223173_+|peptide-ABC-transporter-substrate-binding-protein
MNFKKSLLSIAVAGIATLGVAQAANVPAGTELAPKQELIWNNGANPASFDPHKIEGVPEGNVARQVFEGLVTSDEKGQLRPGVAVSWEHSDDFKTWTFHLRKDAKWSNGDPVTAHDFVYAWQRLVDPKTASPYASYVEFLKLKNAKDILGGKKPITDLGVEAKDDYTLVLNLDESVGFADKLSEHYVLYPVNKKVVEKFGDKWTAPENFVGNGAFKIESFTVNDKTVLTRNENYWDNKNTVLDKITLLAIENSATDVQRYRAGDEDITNSSLPVELFSKLKKELPEELKVNPTLCTYTYEFNNEKAPFNDVRVRKALSYAIDRDIITTKILQAGQKSAYGFTPPYIGGGDKLTKPEWASWDAKKRYVEAEKLLSEAGYSKSKPLNFTILYNTNDNHKKLAVAVGSMLNKNLGGAVNVKLENQEWKTYLDNRKAGKFDVARAGWCADYNEATTFLTYFLSDSSNNKAFYKSAEYDGLVNGSYSAKDDVARSEAYAKAEAVLNKDTPFAPVYYYVDPQLVKPWVKGFAYSHPAKNYYLKDVYIIKH
>NZ_CP021060.1|WP_054393554.1|223234_224155_+|oligopeptide-ABC-transporter-permease-OppB
MIKFIFRRILEAIPTLFVLITVSFFLMRLAPGSPFTSEKDYPPEVMANINAKYGLDKPLLVQYGNYLNDLAHGDFGPSFKYKDHSVNELVAKAFPVSLKLGILAFIIAKIIGITAGILAALKQNKWLDYFIMTFAMTGVVLPNFVIAPLLVLFFAIFWKLLPSGGWNGGAPLYMILPIFALTVSTIAGTARIMRGSMIEVLHSNYIRTAKAKGLPMRHIIIKHALRPALLPVISYLGPSFVAIITGSMVIESIFSIPGIGQLFVQGAINRDYSLVMSLTILVGTLTITFNAVVDILYAFIDPKLRY
>NZ_CP021060.1|WP_013522002.1|224164_225082_+|oligopeptide-ABC-transporter-permease-OppC
MITQKNKEFVQDLASNLESTEFVKGRSLWQDARRRFFRNRAALISLVILVLITCFVIFAPMLIPFDYADTDWAMMSMAPDFESKHYFGTDSSGRDLLVRVAVGGRISLMVGVAGALIAVIVGTLYGAIAGFVGGIVDSLMMRFLEILYSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKKKEFIEAAIVSGVSKRKIIWNHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLNDGAISMEVSPWLLIFPSIFIVVTLFCFNFIGDGLRDALDPKDR
>NZ_CP021060.1|WP_013522003.1|225086_226097_+|oligopeptide-ABC-transporter-ATP-binding-protein-OppD
MDTNNKAPLLDVSNLKVSFKTPDGLVTAVRNLSFELKHGHTLGIVGESGSGKSQTAFAIMGLLAHNGIVSGSIKFEGQELLHKSIKEINKLRAEKIAMIFQDPMTSLNPFMKVGDQLMEVLKLHKGMNSKSAFEESVRMLDAVKMPEARKRMSMYPHEFSGGMRQRVMIAMALLCKPKLIIADEPTTALDVTVQAQIMQLLNELKSEFNTSIVLITHDLGVVAGICDDVLVMYGGQLMEYATTNDIFYDPTHPYTTGLIGAVPRLDTQEDELVTIPGNPPNLLNLPAGCPFQPRCKYAMEHCHQEPVIESFDAGRRRACFVPVEEFRVLSRSEYEQ
>NZ_CP021060.1|WP_013522004.1|226086_227070_+|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF
MNNKPILLDVKNLSVSFKVKDKKAFIWEKPHLLKAVNDVSFQLYEGETLGVVGESGCGKSTLARAIIGLVEASNGSITYLGRNILAQSESGWHETRKSMQMIFQDPLASLNPRMTVGDIIAEPLKVVEPGLGSKRVKERVQNMMRKVGLLPNLINRYPHEFSGGQCQRIGIARALIVNPKMLICDEPVSALDVSIQAQVINLLKSLQHEMGLSLIFIAHDLSVVRHISDRVLVMYLGNAVELGDYEPVYMQTKHPYTKALMSAVPIPNPKLERSKKIQILEGDLPSPINPPSGCVFRTRCPIADSTCAQIKPELAGDDTHKVACLKA
>NZ_CP021060.1|WP_013522010.1|228837_229104_-|50S-ribosomal-protein-L27
MAQKKGGGSTRNGRDSESKRLGVKVYGDQAINAGSIIVRQRGTRVHAGENVGMGKDHTLYALKDGVVKFSHRGALNKHTVSVVESTKN
>NZ_CP021060.1|WP_013522011.1|229116_229425_-|50S-ribosomal-protein-L21
MYAVIKTGGKQYRVAEGEKIKVEQIPADIDEVISLDQVLSVGEGDSLKVGTPFVDGAVVKAKVLSHGRHDKVRIFKMRRRKHYQKRQGHRQNFTEILIESIA
>NZ_CP021060.1|WP_013522012.1|229567_230101_-|HIT-family-protein
MTDHNHLHDTCSPCNHNLATDTETCEFCQALGGTFIYRDSKLRVINANDPDFPMYTRVIWEDHSKEMTDLCIADRQYLMDIIYLIEGVQRNLLKAVKVNMAQFGNVVPHLHWHVIPRFSWDLRYPNSFWSDDMRERDDEYLVKLAGLYKLLPDYHAALLDAFIKHSIGDKAVECGCH

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Crispr_ID: NZ_CP021060_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP021060_3

377727-378027

Orphan

Consensus_repeat	Method
CTTTGCGTTTTTCTTCTTC	CRT

5 spacers

The CRISPR arrays of NZ_CP021060_3

>merge|NZ_CP021060|3|377727-378027|CRT
CTTTGCGTCTTTCTTCTTCGGCTTTTTTGCGGGCCTCTTCCTCTTTGCGTTTTTCTTCCTCAGCCTTCAAACGAGCATCTTCCGCTTTGCGTTTTTCTTCTTCCGCTTTTTTGCGGGCCTCTTCCTCTTTGCGTTTCTCTTCTTCGGCTTTTTCTTTGGCAATACGTTCTTCCTCAGCCCTTTTTCGAGCTTCTTCCGCTTTGCGTTTTTCTTCTTCCGCTTTTTTGCGGGCCTCTTCCTGTTTGCGTTTCTCTTCTTCGGCTTTTTTGCGAGCTTCTTCAGCTTTGCGTTTTTCTTCTTC

>NZ_CP021060|3|2|377727-378027|CRT
CTTTGCGTCTTTCTTCTTC	GGCTTTTTTGCGGGCCTCTTCCT
CTTTGCGTTTTTCTTCCTC	AGCCTTCAAACGAGCATCTTCCG
CTTTGCGTTTTTCTTCTTC	CGCTTTTTTGCGGGCCTCTTCCT
CTTTGCGTTTCTCTTCTTC	GGCTTTTTCTTTGGCAATACGTTCTTCCTCAGCCCTTTTTCGAGCTTCTTCCG
CTTTGCGTTTTTCTTCTTC	CGCTTTTTTGCGGGCCTCTTCCTGTTTGCGTTTCTCTTCTTCGGCTTTTTTGCGAGCTTCTTCAG
CTTTGCGTTTTTCTTCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP021060.1\|WP_013522155.1\|383805_384192_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021060.1\|WP_044962187.1\|380049_381798_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP021060.1\|WP_054393650.1\|375984_377232_-\|PD40-domain-containing-protein	unknown	unknown	gnl\|CDD\|235083
NZ_CP021060.1\|WP_013522137.1\|369391_369784_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260133
NZ_CP021060.1\|WP_014840181.1\|385405_386227_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NZ_CP021060.1\|WP_054393647.1\|373177_373585_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP021060.1\|WP_013522149.1\|378448_378907_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|274306
NZ_CP021060.1\|WP_081447340.1\|373626_373974_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP021060.1\|WP_013522139.1\|371590_371878_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP021060.1\|WP_013522140.1\|371998_373009_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270410
NZ_CP021060.1\|WP_044962185.1\|378915_379605_-\|protein-TolQ	unknown	unknown	gnl\|CDD\|131843
NZ_CP021060.1\|WP_013522157.1\|384534_385413_+\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|377344
NZ_CP021060.1\|WP_054393649.1\|375472_375973_-\|peptidoglycan-associated-lipoprotein-Pal	unknown	unknown	gnl\|CDD\|274307
NZ_CP021060.1\|WP_013522153.1\|381868_382396_+\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NZ_CP021060.1\|WP_054393653.1\|382397_383729_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_CP021060.1\|WP_013522156.1\|384195_384498_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
NZ_CP021060.1\|WP_054393648.1\|374796_375459_-\|tol-pal-system-protein-YbgF	unknown	unknown	gnl\|CDD\|188247
NZ_CP021060.1\|WP_013522138.1\|369893_371537_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP021060.1\|WP_014840175.1\|373994_374795_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP021060.1\|WP_015555469.1\|379597_380041_-\|tol-pal-system-associated-acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|274304

Protein	Function_ID	Function_description	E-value
NZ_CP021060.1\|WP_013522157.1\|384534_385413_+\|SIMPL-domain-containing-protein	gnl\|CDD\|377344	pfam04402, SIMPL, Protein of unknown function (DUF541). Members of this family have so far been found in bacteria and mouse SwissProt or TrEMBL entries. However possible family members have also been identified in translated rat (Genbank:AW144450) and human (Genbank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerization. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.	2.99205e-14
NZ_CP021060.1\|WP_044962187.1\|380049_381798_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP021060.1\|WP_054393650.1\|375984_377232_-\|PD40-domain-containing-protein	gnl\|CDD\|235083	PRK02889, tolB, Tol-Pal system protein TolB.	2.20976e-121
NZ_CP021060.1\|WP_013522137.1\|369391_369784_-\|diacylglycerol-kinase	gnl\|CDD\|260133	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of diacylglycerol to phosphatidic acid. Escherichia coli DAGK participates in the membrane-derived oligosaccharide cycle (MDO cycle) by recycling lipids to restore phosphatidylglycerols that were used up in the biosynthesis of MDOs. DAGK also recycles diacylglycerols that are produced during the biosynthesis of lipopolysaccharides (LPS) back to phospholipids. DAGK is not the main source of phosphatidic acid in de-novo biosynthesis of glycerophospholipids. Escherichia coli DAGK has low activity as an undecaprenol kinase.	5.88784e-46
NZ_CP021060.1\|WP_014840181.1\|385405_386227_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	1.24333e-114
NZ_CP021060.1\|WP_013522149.1\|378448_378907_-\|biopolymer-transporter-ExbD	gnl\|CDD\|274306	TIGR02801, Protein_TolR, TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	2.34836e-36
NZ_CP021060.1\|WP_081447340.1\|373626_373974_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	1.77999e-23
NZ_CP021060.1\|WP_013522139.1\|371590_371878_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	4.18519e-39
NZ_CP021060.1\|WP_013522140.1\|371998_373009_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270410	cd13692, PBP2_BztA, Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold. BztA is the periplamic-binding protein component of ABC transporter specific for carboxylic amino acids, glutamine and asparagine. The BZtA domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.81794e-121
NZ_CP021060.1\|WP_044962185.1\|378915_379605_-\|protein-TolQ	gnl\|CDD\|131843	TIGR02796, Protein_TolQ, TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis].	2.9099e-87
NZ_CP021060.1\|WP_054393649.1\|375472_375973_-\|peptidoglycan-associated-lipoprotein-Pal	gnl\|CDD\|274307	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.	3.13667e-48
NZ_CP021060.1\|WP_013522153.1\|381868_382396_+\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	3.85439e-89
NZ_CP021060.1\|WP_054393653.1\|382397_383729_+\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_CP021060.1\|WP_013522156.1\|384195_384498_+\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	4.50165e-12
NZ_CP021060.1\|WP_054393648.1\|374796_375459_-\|tol-pal-system-protein-YbgF	gnl\|CDD\|188247	TIGR02795, Uncharacterized_protein_in_oprL_3'region, tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.	1.94248e-26
NZ_CP021060.1\|WP_013522138.1\|369893_371537_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP021060.1\|WP_014840175.1\|373994_374795_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.64488e-25
NZ_CP021060.1\|WP_015555469.1\|379597_380041_-\|tol-pal-system-associated-acyl-CoA-thioesterase	gnl\|CDD\|274304	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import of certain organics but also in the maintenance of outer membrane integrity (by an unknown mechanism).	1.26716e-62

>NZ_CP021060.1|WP_054393650.1|375984_377232_-|PD40-domain-containing-protein
MVLTRFYKFIAFLAFTTFAFLYSQITFAQVEVPLSGVNTVDNRLPIYVADFMGPRGKQIADIVAKDLTNSGQFNVTRIASISKDPHDKLDWDKLVDLSKGANIVTGFDNKDHVHYRFLDPIQQKVREEARVSNPSQRAIAHKISDYAYEQSIGLKGAFSTKIAFVSGRSLYISDYDGHNAKVLVSGATIISPAWSPDGSKIAYVSFESGKPIVYVQQLSTGVRIPVASFKGNNSAPAWSPSGVSLAVALSRDALSDIYLVSSDGTTKSPRSLSSSPEIETEPFFFPNNSGLVFVSDRGGSPQIYKSGLNNGPASRITFNGSQNLSPRISPDSNSLVFTSLRKGKYVIALMNLASGDERVISSGPDDLSPTFSPNGMNVMHVSSGKIKISSTVSNFSITIPTQGAVSAVTWGPFIK
>NZ_CP021060.1|WP_054393649.1|375472_375973_-|peptidoglycan-associated-lipoprotein-Pal
MSLRKFKTLSLASLVLALVACSTTETNNTTDTNNNMTNTNGSNQVIMDPFNPASPLYQNKSVYFAFDSYTVEPEYNEMIQMHAKYLSSNPTRTVRVEGNTDLRGSSEYNLALGQRRSVAVARLLNQYGVNSAQLEAVSFGKERPQATGNSEEAHAQNRRADIQYMK
>NZ_CP021060.1|WP_054393648.1|374796_375459_-|tol-pal-system-protein-YbgF
MNKSLINKLVVASFSVIAFSSPAMAEDEEARRAILELRAQIKHSDAMRNELSNQIVLLQEDIRKLRGQVEVLSNSICKQNMTLKGTGDITAPTQVGDPTEQNAYDTALDLFRQGNYQASATALANFTSAYPTSVLVPSALFYEGGSRYAIKDFKGSISTLNRMVEQYPNDPQAGDALLVIAGNHYELNNINEYKSTLNRIIKQYPGTPAADTAKERLNMN
>NZ_CP021060.1|WP_014840175.1|373994_374795_-|alpha/beta-hydrolase
MISEVAINDIPFAFKDEGKGVPLLLIHGSLCDYRYWRAQEKSLSQNLRLIIPSLTYYWPHKSNPEHFNYTNHAEDLVHLMDHLGIDKFHVLGHSRGGGVAMQLALNFQDRIQSLILADPGIRTKKQLTEGLAGRRESLKYIVTGEVEKGAQIFVDLVSGAGTYEKMVPWFKEMVHDNVHTLLVQKNEPPFLIEDKNLEGLDNLIPICLIGGGASPEPFPSIVKELHDMWSASEYHTIEQASHGMNLSHPHMFNEIVANHVNKNKKG
>NZ_CP021060.1|WP_081447340.1|373626_373974_+|copper-chaperone-PCu(A)C
MRLFPSDRFSALYFDVTNNSETETAYIVGVSSEKFKEADMHETYTAEGVMAGMRSVDWVEVAPKSTVNFKSGGYHVMLSKHEVNVGDEVEFSLKLSNHETKSFSCKANDIKSVAY
>NZ_CP021060.1|WP_054393647.1|373177_373585_+|hypothetical-protein
MKSALFLSLGLAFGSVAFAQTAPSEMKTNTDESMNTEVVKPDETKEAPAAQDQAAPSSEMKTNTDESMDMKKDEMKKDEAAATPVTPLPIPPGTATEPAKDETAPASETKTNTDESMDMHKDHEQKNDVEKKTLQ
>NZ_CP021060.1|WP_013522140.1|371998_373009_-|amino-acid-ABC-transporter-substrate-binding-protein
MKKLSLLIAGLVLASTQVQADTLETVKSRGHVVCGTTTGFAGFSAPNDKGEWEGLDVDLCKSIAAAVFGDASKFKTVPLNSQQRFTALQSGEIDILTRNTTVTQQRDTAIGLMSPGVNFYDGQGFLIKKDLGVKSAKELDGATVCMQTGTSNENTMADWARANKITYKPVVFDQFNEVVNAFASGRCDVFTTDASGLASIRISKLSNPDDYVVLPEIISKEPLGPFVRQSDDKWFNIVKWVMHAQWNAEELGITSKNVDEQKNSTNPNVQRLLGVTEGSGKNLGLSEDWAYQVIKQVGNYGESFDRNVGKDSVLKVPRGLNKLYTDGGLHYGLPIR
>NZ_CP021060.1|WP_013522139.1|371590_371878_-|co-chaperone-GroES
MALRPLQNLVVIKRVDNKKTTESGIILAGSAEEKQDIGEVVAVGPGRKSESGQLISVDLKVGDRVLFGKYAGQAVKMDGEELLVIRDEEILAVVE
>NZ_CP021060.1|WP_013522138.1|369893_371537_-|chaperonin-GroEL
MTAKQVFFGDDARSRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPLVTKDGVSVAKEIELKDKFENIGAQLVREVASKTADNAGDGTTTATVLAQAIVEEGLKYVAAGINPMDLKRGIDKAVAASVDELQKLSRPSSTSKEIAQVASISANSDTSVGEIIANAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINNGEKQIAALDDPYILIHDKKISNIRDLLPVLEQVAKTSRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGFGDRRKAMLEDIAVLTNGVVISEETGMSLETATLENLGQAKRVEVGKESTTVIDGAGAVDKIEERVNLIRRQIDESTSDYDREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRTKQAIAAVKGDNADQDAGIKLVLRAIEAPLRTIVSNAGEEPSVVLNNVLNGEGNYGYNAATGEYGDMMEQGVLDPTKVTRNALQNAASVASLLLTTEAAVTEVVEDKPAPAMPDMGGMGGMGGMGF
>NZ_CP021060.1|WP_013522137.1|369391_369784_-|diacylglycerol-kinase
MSKDYESPYKSKLSYNRIWNATKYSFQGFRSAFKYEASFCQEFLICCFMAPLAFVLGRTPLEIIVLMFTLFLVLIVELLNSALETLGDRIINDYDEMIKRAKDLGSAAIFLCLVFSFFTWLYFLIRYIAH
>NZ_CP021060.1|WP_013522149.1|378448_378907_-|biopolymer-transporter-ExbD
MSRRSSRRSTKRRFKNEMNVVPYIDVMLVLLVIFMVTAPLITPGLINLPTVGKAANVPVTPVEVQLEQNGTISVRLRKPGVDFEETTEAMVANKIKSMMTDENTPVVISADGQVAYKDVVKLMDSLRASGIARLGLMVNKEKGENPSTKRSN
>NZ_CP021060.1|WP_044962185.1|378915_379605_-|protein-TolQ
MNEVAINTPDKMSILTLITDASLPVQIIMLLLLVLSVVSWAIIFSKFTLLSGSNTSNKNFLNDFWRGGDLTDLHSKIQKAPRKYGITARVFEAGMTEFLKARSKKLSPELQTLAADRAMQATYNREMDGLDSRLSFLATVGSVSPYIGLLGTVWGIMHSFLGLTADTTATLSAVAPGIAEALIATAIGLFAAIPASIAYNSFSRSIDKVSTNTEGFMDEFLNILQRQAS
>NZ_CP021060.1|WP_015555469.1|379597_380041_-|tol-pal-system-associated-acyl-CoA-thioesterase
MKLSTDNRKFVFPVRVYYEDTDAGGVVFYANYLKFCERARTEWLRKLGFDQSKLDSELGLIFVVADTSLTYKKPAKLDDILSIHTIVESMGKASIVFTQDVYRDNELLVKSRITVCCIKRDGFRPSAIPESVRLSFESVMSPRITNE
>NZ_CP021060.1|WP_044962187.1|380049_381798_-|proline--tRNA-ligase
MLASKYHINTLKEAPAEAEVVSHKYMLRAGMIRKLGAGIYTYMPLGFKVLKKVEAIVREEMNRAGAIELLMPIVQPAELWMKTERWNAYGPELLRFKDRHSRDFIIQPTSEEVITDIVANEVHSWRQLPLNFYHIQTKFRDERRPRFGLMRGREFLMKDAYSFDRTEEEANISYQKMYDAYVRIFTRLGLKFRAVNADTGSIGGSRSHEFQVIAQTGEDLIVYNPQSEYAANIELAEAVSLIEKRAEPTKELELIETPDCVKCELVAKFLNVPLETNVKSVVFSIQKNSGEHVICMLLIRADHELNDVKVSKLELFKNAKSYDMATEEQIKEYFGTTPGYLGPVKPLKDVVVIADRTVANMSDFICGGNKDGTHYVGVNWGRDLPEPQVEDIRNVVEGDPTSDGVGTLAIDRGIEVGHVFFLGDKYSSKLRAVYLDENGKEAVIQMGCYGIGVSRIVAAAIEQNHDENGIIWPLPMAPYEIVICPIGWSKSEEVKNKSLELYEQLKAEGYDVILDDRDLRTGVMFTEWELIGVPIRITVGDRGLKDGVIEVQKRTEKEAKKLSLNEVINYVKSVYDEMSIRV
>NZ_CP021060.1|WP_013522153.1|381868_382396_+|RNA-pyrophosphohydrolase
MLDRDGYRPNVGIILVNSKNEVFWGKRIRERSWQFPQGGIKYGEKPLQAMYRELYEELGLKPKHVQLLGRTGEWLRYNVPENYIRRDSRGLYKGQKQIWFMLRLLGRDKDINLRSTNHPEFDAWRWSNYSVPLHQVIEFKREVYEIALTELGGHIAIEYKSQTIVTKEIIESVQA
>NZ_CP021060.1|WP_054393653.1|382397_383729_+|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MHEDTIAAIATAPGRGGIGVVRVSGQELAGFARALTNGLDPKPRIATYTDFFDDDGTAIDNGLLLYFPAPHSFTGEDVLELQGHGGPVILNMVLKRCIELGARLAEPGEFTKRAFLNNKIDLTQAESVADLIDATSEKAARMALRSLKGVFSDRIHELVSKLINLRMLVEATLDFPEEEIDFLEAADALGQLNEIRKLLEGIISQANQGTIMREGLKVALIGMPNVGKSSLLNALSGEEVAIVTDIAGTTRDVVKNFIHIDGVPIHFMDTAGLRETEDLVEQIGIKKSEKTLQDADVALILQDPREEIGPKLQEVLSRIPQSVKTIYIQNKIDLIDKQPAQDNNVIYLSAKTGAGLDLLKKALLEVAGWEGESEGLFLARTRHMNALSEAKSQLEIAKEIAYSGLDLFAEHLRLAQEHLNTITGEFTADDLLGEIFSRFCIGK
>NZ_CP021060.1|WP_013522155.1|383805_384192_+|hypothetical-protein
MLSNLDQIIAKTQKVVEQNQVLFNERNRLRQLVSNYETQILESKQKAKDDSEQITKLTDKVKELEGFLESTQNIYKSEVKSLKERNRVLELANEQNTGTIATWKEEMGSIRSRVAHVLENISNDVQGE
>NZ_CP021060.1|WP_013522156.1|384195_384498_+|cell-division-protein-ZapA
MEKVDINILDRAISLTTEPQDKEALLLSAKKVDELLRSIKQSSPNLAIERVAILGCLKLALDFLKMQSKEGPFSGVPVYEVDKRIAEINCLLDQAASTLD
>NZ_CP021060.1|WP_013522157.1|384534_385413_+|SIMPL-domain-containing-protein
MTKRHFSILALALSTVAFAPLYAQETQTAPAVPETAESNSAPATTQAFPNQNLAAPNQAQDSIKDNSKTTTMDDSKNDVKSARFTISSSVHKKVKADFIELTLRTEKGGEKLEEMTAEVNNAMKKVLELSKDFPELQVSTNNFNFWKEYPHYGSSSLSKNEIIWNVQGSVSVAGGDFKKIEEFIKATNNIMIPDNMNFSLSQSARKAAEAEILQQAADEFKDKADRVIKAFGYTSYTIGSVGMDGNIPDYFTNGNFGRVVDAAMNFKEAGGLPVSPGSVDVSVSFTGEIFAK
>NZ_CP021060.1|WP_014840181.1|385405_386227_-|prolipoprotein-diacylglyceryl-transferase
MLTYPQIDPVAIDLGFIKVHWYGIMYLVGFFFAWLLGRYRIKKGYFNISFNRFEDLLFWSILGVVFGGRLGYVLFYNPVYYFWNPQKIFAFWDGGMAFHGGLIGVTIAMAYFAYKEKKHFLEVTDFVSPLVPLGLAFGRLGNFINGELWGRVTDVPWAMIFPGSDGQPRHPSQLYQMMGEGFLLFLIVWIYSSKPRLIGKVSGLFVMGYGVFRFLAEFAREPDRQLGYLAFGLSMGQWLSVPMILLGLIVFLRPLKRMATRGPSQDTVTRDTI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	MH617122	Microviridae sp. isolate ctcf586, complete genome	4282-4313	5	0.844
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_AP018564	Staphylococcus argenteus strain 58113 plasmid p2, complete sequence	57133-57164	6	0.812
NZ_CP021060_2	2.10\|216300\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216300-216331	32	JN638751	Bacillus phage G, complete genome	175848-175879	7	0.781
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	MN693858	Marine virus AFVG_250M1106, complete genome	19926-19957	7	0.781
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	KT070867	Bacillus phage PBC2, complete genome	96458-96489	7	0.781
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	208274-208305	8	0.75
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	MH617194	Microviridae sp. isolate ctbf575, complete genome	4507-4538	8	0.75
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	NC_019357	Shigella boydii plasmid pSB13, complete sequence	4257-4288	8	0.75
NZ_CP021060_2	2.19\|216840\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216840-216871	32	MG592529	Vibrio phage 1.161.O._10N.261.48.C5, partial genome	1230-1261	8	0.75
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_CP014570	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence	15199-15230	8	0.75
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_CP043436	Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence	9821-9852	8	0.75
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_CP008809	Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence	3307-3338	8	0.75
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_CP008812	Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence	10768-10799	8	0.75
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_CP018792	Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence	16612-16643	8	0.75
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_CP018794	Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence	16876-16907	8	0.75
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_CP006906	Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence	29564-29595	8	0.75
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	MN694159	Marine virus AFVG_250M1044, complete genome	18710-18741	8	0.75
NZ_CP021060_2	2.21\|216960\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216960-216991	32	MN694059	Marine virus AFVG_250M105, complete genome	43445-43476	8	0.75
NZ_CP021060_2	2.15\|216600\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216600-216631	32	NC_017296	Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence	88526-88557	9	0.719
NZ_CP021060_2	2.15\|216600\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216600-216631	32	NC_015686	Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence	88526-88557	9	0.719
NZ_CP021060_2	2.15\|216600\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216600-216631	32	NC_001988	Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence	88526-88557	9	0.719
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	MK721191	Enterococcus phage vB_EfaS_Ef5.4, complete genome	36382-36413	9	0.719
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	KT932701	Enterococcus phage vB_EfaS_IME196, complete genome	34325-34356	9	0.719
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	MH617027	Microviridae sp. isolate ctda548, complete genome	4248-4279	9	0.719
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	MG264739	UNVERIFIED: Enterococcus phage phiNASRA1, complete genome	32843-32874	9	0.719
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	MK721200	Enterococcus phage vB_EfaS_Ef5.3, complete genome	36479-36510	9	0.719
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	MH616715	Microviridae sp. isolate ctba871, complete genome	4416-4447	9	0.719
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	KX284704	Enterococcus phage SANTOR1, complete genome	32778-32809	9	0.719
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	KX284704	Enterococcus phage SANTOR1, complete genome	37904-37933	9	0.719
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_CP028888	Borrelia turcica IST7 plasmid cp33, complete sequence	7648-7679	9	0.719
NZ_CP021060_2	2.21\|216960\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216960-216991	32	NC_015937	Thermus phage TMA, complete genome	47499-47530	9	0.719
NZ_CP021060_2	2.21\|216960\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216960-216991	32	AP011617	Thermus phage TMA DNA, complete genome	47499-47530	9	0.719
NZ_CP021060_2	2.22\|217020\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	217020-217051	32	KP282678	Sulfolobus monocaudavirus SMV4, complete genome	21610-21641	9	0.719
NZ_CP021060_2	2.24\|217140\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	217140-217171	32	NC_015386	Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence	122141-122172	9	0.719
NZ_CP021060_2	2.25\|217200\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	217200-217231	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	476881-476912	9	0.719
NZ_CP021060_2	2.29\|217440\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	217440-217471	32	LR134127	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 7	230281-230312	9	0.719
NZ_CP021060_2	2.13\|216480\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216480-216511	32	NC_041878	Pectobacterium phage CBB, complete genome	248159-248190	10	0.688
NZ_CP021060_2	2.16\|216660\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216660-216691	32	KJ127304	Enterococcus phage AUEF3, partial genome	28088-28119	10	0.688
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	222845-222876	10	0.688
NZ_CP021060_2	2.20\|216900\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	216900-216931	32	NZ_CP015251	Bacillus thuringiensis Bt18247 plasmid p174778, complete sequence	118825-118856	10	0.688
NZ_CP021060_2	2.23\|217080\|32\|NZ_CP021060\|PILER-CR,CRISPRCasFinder,CRT	217080-217111	32	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	846982-847013	10	0.688

1. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MH617122 (Microviridae sp. isolate ctcf586, complete genome) position: , mismatch: 5, identity: 0.844

-tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
atcga-aataaaatatacacagaagaagaaaaa	Protospacer
 **** * .** *************** *****

2. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018564 (Staphylococcus argenteus strain 58113 plasmid p2, complete sequence) position: , mismatch: 6, identity: 0.812

-atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
gata-taaaaaagtaaaggttgtgataaggctt	Protospacer
 *** * ************** ****.****

3. spacer 2.10|216300|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 7, identity: 0.781

gaaataatgccgtatgaaacaaatttccccac	CRISPR spacer
gtagtaatgccatatgtaacaaatttctcttc	Protospacer
* *.*******.**** **********.*. *

4. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MN693858 (Marine virus AFVG_250M1106, complete genome) position: , mismatch: 7, identity: 0.781

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
aaatttaaaaaataaaggttttgataaagaag	Protospacer
* *********.*************.*.* ..

5. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to KT070867 (Bacillus phage PBC2, complete genome) position: , mismatch: 7, identity: 0.781

atatt-taaaaagtaaaggttttgatgaggcga	CRISPR spacer
-tattgtaaaacttaaaggttttgatgagctag	Protospacer
 **** *****  **************** ...

6. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
gtgatatcaacatatacagagaagaaaaggag	Protospacer
 .****.*********** ******* *..*.

7. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MH617194 (Microviridae sp. isolate ctbf575, complete genome) position: , mismatch: 8, identity: 0.75

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
acaggaacaaaatatacacagaagaagaaaag	Protospacer
 *.. * *** *************** ****.

8. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NC_019357 (Shigella boydii plasmid pSB13, complete sequence) position: , mismatch: 8, identity: 0.75

tcgata-ccaacatatacacagaagaacaaaaa	CRISPR spacer
-caacattcaaaaaatacacagaagaacaaagg	Protospacer
 *.*.* .*** * *****************..

9. spacer 2.19|216840|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MG592529 (Vibrio phage 1.161.O._10N.261.48.C5, partial genome) position: , mismatch: 8, identity: 0.75

agcaggatgtaagaattgcagagcttactata	CRISPR spacer
cttaggatgtaagaagtacagagcttgggata	Protospacer
  .************ *.********.  ***

10. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014570 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence) position: , mismatch: 8, identity: 0.75

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
ttatttaaaaagcaaaggttttgataaaaatt	Protospacer
 ***********.************.*..

11. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043436 (Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence) position: , mismatch: 8, identity: 0.75

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
ttatttaaaaagcaaaggttttgataaaaatt	Protospacer
 ***********.************.*..

12. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008809 (Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence) position: , mismatch: 8, identity: 0.75

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
ctatttaaaaagcaaaggttttgataaaaatt	Protospacer
 ***********.************.*..

13. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008812 (Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence) position: , mismatch: 8, identity: 0.75

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
ttatttaaaaagcaaaggttttgataaaaatt	Protospacer
 ***********.************.*..

14. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018792 (Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence) position: , mismatch: 8, identity: 0.75

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
ctatttaaaaagcaaaggttttgataaaaatt	Protospacer
 ***********.************.*..

15. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018794 (Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence) position: , mismatch: 8, identity: 0.75

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
ctatttaaaaagcaaaggttttgataaaaatt	Protospacer
 ***********.************.*..

16. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006906 (Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence) position: , mismatch: 8, identity: 0.75

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
aactttcaaaagtaaaggttttggtgactata	Protospacer
*  *** ****************.***    *

17. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MN694159 (Marine virus AFVG_250M1044, complete genome) position: , mismatch: 8, identity: 0.75

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
agatttacaaagtaaaggtttagataaaactt	Protospacer
* ***** ************* ***.*..*

18. spacer 2.21|216960|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MN694059 (Marine virus AFVG_250M105, complete genome) position: , mismatch: 8, identity: 0.75

gtgttgttatcaactctaacaacatatggctc	CRISPR spacer
ttctaattatcaactcgcacaacatatggatg	Protospacer
 * * .**********  *********** *

19. spacer 2.15|216600|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 9, identity: 0.719

atttcggaagggttacattgttaagtcttggg----	CRISPR spacer
ctttcggaatgcttacattgttaa----tagcaatt	Protospacer
 ******** * ************    *.*

20. spacer 2.15|216600|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 9, identity: 0.719

atttcggaagggttacattgttaagtcttggg----	CRISPR spacer
ctttcggaatgcttacattgttaa----tagcaatt	Protospacer
 ******** * ************    *.*

21. spacer 2.15|216600|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 9, identity: 0.719

atttcggaagggttacattgttaagtcttggg----	CRISPR spacer
ctttcggaatgcttacattgttaa----tagcaatt	Protospacer
 ******** * ************    *.*

22. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MK721191 (Enterococcus phage vB_EfaS_Ef5.4, complete genome) position: , mismatch: 9, identity: 0.719

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
agtatttcaacttatacacagaagaaccaatt	Protospacer
   ** .**** *************** **

23. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to KT932701 (Enterococcus phage vB_EfaS_IME196, complete genome) position: , mismatch: 9, identity: 0.719

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
agtatttcaacttatacacagaagaaccaatt	Protospacer
   ** .**** *************** **

24. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MH617027 (Microviridae sp. isolate ctda548, complete genome) position: , mismatch: 9, identity: 0.719

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
ggagaaacaaaatatacacagaagaagaaaga	Protospacer
  .. * *** *************** ***.*

25. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MG264739 (UNVERIFIED: Enterococcus phage phiNASRA1, complete genome) position: , mismatch: 9, identity: 0.719

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
agtatttcaacttatacacagaagaaccaatt	Protospacer
   ** .**** *************** **

26. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MK721200 (Enterococcus phage vB_EfaS_Ef5.3, complete genome) position: , mismatch: 9, identity: 0.719

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
agtatttcaacttatacacagaagaaccaatt	Protospacer
   ** .**** *************** **

27. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to MH616715 (Microviridae sp. isolate ctba871, complete genome) position: , mismatch: 9, identity: 0.719

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
ggagaaacaaaatatacaccgaagaacaaaga	Protospacer
  .. * *** ******** **********.*

28. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to KX284704 (Enterococcus phage SANTOR1, complete genome) position: , mismatch: 9, identity: 0.719

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
agtatttcaacttatacacagaagaaccaatt	Protospacer
   ** .**** *************** **

29. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to KX284704 (Enterococcus phage SANTOR1, complete genome) position: , mismatch: 9, identity: 0.719

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
agtatttcaacttatacacagaagaaccaa--	Protospacer
   ** .**** *************** **

30. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028888 (Borrelia turcica IST7 plasmid cp33, complete sequence) position: , mismatch: 9, identity: 0.719

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
aaatttaaaaaataaatgttttgattttagaa	Protospacer
* *********.**** ********   . .*

31. spacer 2.21|216960|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NC_015937 (Thermus phage TMA, complete genome) position: , mismatch: 9, identity: 0.719

gtgttgttatcaactctaacaacatatggctc	CRISPR spacer
tggctgttataaagtctaacaacatatgaaga	Protospacer
  *.****** ** **************.

32. spacer 2.21|216960|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to AP011617 (Thermus phage TMA DNA, complete genome) position: , mismatch: 9, identity: 0.719

gtgttgttatcaactctaacaacatatggctc	CRISPR spacer
tggctgttataaagtctaacaacatatgaaga	Protospacer
  *.****** ** **************.

33. spacer 2.22|217020|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to KP282678 (Sulfolobus monocaudavirus SMV4, complete genome) position: , mismatch: 9, identity: 0.719

aaacagctgttaatagaccgtataccccgttt	CRISPR spacer
aaacagctgttaatagagcgtctacttgaaga	Protospacer
***************** *** ***.. .

34. spacer 2.24|217140|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NC_015386 (Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence) position: , mismatch: 9, identity: 0.719

ctacgcataccaagcgaaaatatgaaaggtgc	CRISPR spacer
atttaccaaccaagcgaaaatctgaaagatgt	Protospacer
 * ..*  ************* ******.**.

35. spacer 2.25|217200|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.719

gttagttgcaagtttagatatgtttcctggga	CRISPR spacer
ttctcttgcaagtttatagatgtttcctccgt	Protospacer
 *.  *********** * *********  *

36. spacer 2.29|217440|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to LR134127 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 7) position: , mismatch: 9, identity: 0.719

attcaattatcccgtcaatatcgattcggtta	CRISPR spacer
acgcaattatctcgtcattatcgattaccgaa	Protospacer
*. ********.***** ********     *

37. spacer 2.13|216480|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 10, identity: 0.688

atattcgtctgaattgaagtatatacgtttta	CRISPR spacer
tcgcgtttctgaatttaagtatatatgttttc	Protospacer
 ... . ******** *********.*****

38. spacer 2.16|216660|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to KJ127304 (Enterococcus phage AUEF3, partial genome) position: , mismatch: 10, identity: 0.688

tcgataccaacatatacacagaagaacaaaaa	CRISPR spacer
aacttttcaacttatacacagaagaaccaatt	Protospacer
    * .**** *************** **

39. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 10, identity: 0.688

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
tgatttgaaaagtaaaggtattgattataatg	Protospacer
  ****.************ ***** * .  .

40. spacer 2.20|216900|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015251 (Bacillus thuringiensis Bt18247 plasmid p174778, complete sequence) position: , mismatch: 10, identity: 0.688

atatttaaaaagtaaaggttttgatgaggcga	CRISPR spacer
tttattaaaaaataaagcttttgatgaacaac	Protospacer
 *  *******.***** *********.  .

41. spacer 2.23|217080|32|NZ_CP021060|PILER-CR,CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ttcaaacagggtcagtaacagcacagaaacta	CRISPR spacer
aaaaaacagggtgagtaacaggacagccaacg	Protospacer
   ********* ******** ****  * ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

235396 : 243257

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054393616.1\|235396_236329_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.3e-39	38.1
WP_054393558.1\|236325_236799_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.7e-22	55.3
WP_013522022.1\|236814_237690_-	RNase adapter RapZ	A0A1P8D5W0	Corynebacterium_phage	1.3e-06	31.9
WP_013522023.1\|237699_238635_-	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_013522024.1\|238627_239089_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_013522025.1\|239099_239858_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-20	28.6
WP_013522026.1\|239844_240474_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_013522027.1\|240477_241104_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_044962116.1\|241105_241684_-	HAD hydrolase family protein	A0A222YVZ6	Synechococcus_phage	3.1e-12	34.0
WP_013522029.1\|241694_242672_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	7.5e-35	35.3
WP_014840114.1\|242720_243257_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-31	45.2

DBSCAN-SWA_2

249955 : 257532

uncultured_marine_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095681270.1\|249955_250432_+	adenylyltransferase/cytidyltransferase family protein	A0A0F7LBI5	uncultured_marine_virus	1.3e-11	36.7
WP_013522038.1\|250428_251112_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.5e-13	32.3
WP_044962123.1\|251141_251951_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_013522040.1\|252046_253309_+	polyphosphate kinase 2	NA	NA	NA	NA
WP_054393561.1\|253412_254780_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	1.5e-41	26.8
WP_013522042.1\|254788_255796_+	asparaginase	NA	NA	NA	NA
WP_054393562.1\|255799_256468_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.5e-55	50.9
WP_013522044.1\|256445_256877_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	1.0e-23	43.0
WP_081943427.1\|256863_257532_+	7-carboxy-7-deazaguanine synthase QueE	A0A1V0DYC7	Dinoroseobacter_phage	3.8e-14	33.8

DBSCAN-SWA_3

318404 : 329477

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054393630.1\|318404_319616_+	aminoacetone oxidase family FAD-binding enzyme	A0A2H4PQX1	Staphylococcus_phage	2.4e-06	32.3
WP_054393631.1\|319604_320810_-	cobalamin-independent methionine synthase II family protein	NA	NA	NA	NA
WP_054393632.1\|320924_322004_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_013522104.1\|322034_322400_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_054393633.1\|322406_325358_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	2.6e-256	49.3
WP_013522106.1\|325359_326154_+	thymidylate synthase	A6M9A2	Geobacillus_virus	9.9e-110	68.2
WP_013522107.1\|326156_326654_+	dihydrofolate reductase	A0A219UQN5	Bacillus_phage	1.8e-32	43.2
WP_014840156.1\|326654_327929_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	M1H3J6	Paramecium_bursaria_Chlorella_virus	1.9e-25	29.8
WP_054393634.1\|327974_329477_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	9.5e-37	25.8

DBSCAN-SWA_4

1000308 : 1007154

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013522700.1\|1000308_1001082_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.0e-31	48.0
WP_013522701.1\|1001081_1001852_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.8e-54	42.4
WP_013522702.1\|1001917_1002505_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_013522703.1\|1002488_1003523_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.8e-93	54.2
WP_013522704.1\|1003664_1004960_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.2e-65	37.1
WP_054393744.1\|1004956_1005553_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	2.2e-21	48.3
WP_013522706.1\|1005552_1007154_-	ABC-F family ATPase	A0A1V0SKJ1	Klosneuvirus	2.7e-58	28.5

DBSCAN-SWA_5

1120554 : 1132446

Bodo_saltans_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014840457.1\|1120554_1121526_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.3e-07	31.6
WP_014840458.1\|1121624_1122443_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_015555757.1\|1122495_1123770_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	2.2e-95	44.4
WP_013521239.1\|1123772_1124375_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A2H4J538	uncultured_Caudovirales_phage	3.2e-28	42.3
WP_054393381.1\|1124457_1126662_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	7.8e-104	36.2
WP_013521241.1\|1126664_1127936_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_013521242.1\|1127932_1128571_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.3e-24	35.7
WP_013521243.1\|1128620_1129586_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_044956167.1\|1129575_1132446_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	9.9e-75	24.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP021060

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection