CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP022691	Klebsiella pneumoniae subsp. pneumoniae strain AUSMDU00008079 chromosome, complete genome	2 crisprs	csa3,cas3,RT,DEDDh,DinG,WYL	1	10
NZ_CP022693	Klebsiella pneumoniae subsp. pneumoniae strain AUSMDU00008079 plasmid pAUSMDU8079-2, complete sequence	0 crisprs	NA	0	1
NZ_CP022694	Klebsiella pneumoniae subsp. pneumoniae strain AUSMDU00008079 plasmid pAUSMDU8079-3, complete sequence	0 crisprs	NA	0	1
NZ_CP022692	Klebsiella pneumoniae subsp. pneumoniae strain AUSMDU00008079 plasmid pAUSMDU8079-1, complete sequence	0 crisprs	csa3,cas3,RT	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022691_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022691_1

4117162-4117257

Orphan

Consensus_repeat	Method
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022691_1

>merge|NZ_CP022691|1|4117162-4117257|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAACCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGTTGGCACTTTGTTGGCATTCTGTTGGCACAA

>NZ_CP022691|1|1|4117162-4117257|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGT
TGGCACTTTGTTGGCATTCTGTTGGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022691.1\|WP_004151295.1\|4115038_4115332_-\|protein-ren	unknown	unknown	gnl\|CDD\|238042
NZ_CP022691.1\|WP_004151288.1\|4111810_4112266_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP022691.1\|WP_004151299.1\|4118137_4118371_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|374243
NZ_CP022691.1\|WP_004151294.1\|4114535_4115042_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022691.1\|WP_001548453.1\|4117875_4118097_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP022691.1\|WP_004151287.1\|4111640_4111811_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP022691.1\|WP_004151301.1\|4119538_4119754_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022691.1\|WP_004151300.1\|4118498_4119188_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP022691.1\|WP_004151286.1\|4111012_4111648_-\|protein-ninG	unknown	unknown	gnl\|CDD\|368603
NZ_CP022691.1\|WP_004151306.1\|4121278_4121959_+\|exonuclease	unknown	unknown	gnl\|CDD\|378216
NZ_CP022691.1\|WP_004151293.1\|4113586_4114429_-\|translation-repressor-RelE	unknown	unknown	gnl\|CDD\|379401
NZ_CP022691.1\|WP_004151303.1\|4119853_4120048_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022691.1\|WP_004151290.1\|4112518_4112767_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022691.1\|WP_004151304.1\|4120136_4120421_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022691.1\|WP_004151291.1\|4112766_4113414_-\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946
NZ_CP022691.1\|WP_004151308.1\|4121955_4122114_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP022691.1\|WP_004151296.1\|4115331_4116762_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|274672
NZ_CP022691.1\|WP_004151305.1\|4120436_4121282_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP022691.1\|WP_004151285.1\|4110878_4111016_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022691.1\|WP_004151310.1\|4122110_4122767_+\|DNA-methyltransferase	unknown	unknown	gnl\|CDD\|227069

Protein	Function_ID	Function_description	E-value
NZ_CP022691.1\|WP_004151295.1\|4115038_4115332_-\|protein-ren	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000668668
NZ_CP022691.1\|WP_004151288.1\|4111810_4112266_-\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.50704e-78
NZ_CP022691.1\|WP_004151299.1\|4118137_4118371_-\|transcriptional-regulator	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.32854e-22
NZ_CP022691.1\|WP_001548453.1\|4117875_4118097_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	1.55058e-09
NZ_CP022691.1\|WP_004151287.1\|4111640_4111811_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.47696e-19
NZ_CP022691.1\|WP_004151300.1\|4118498_4119188_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.58097e-27
NZ_CP022691.1\|WP_004151286.1\|4111012_4111648_-\|protein-ninG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	9.44908e-60
NZ_CP022691.1\|WP_004151306.1\|4121278_4121959_+\|exonuclease	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	1.68114e-32
NZ_CP022691.1\|WP_004151293.1\|4113586_4114429_-\|translation-repressor-RelE	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	0.000117969
NZ_CP022691.1\|WP_004151308.1\|4121955_4122114_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	3.35548e-20
NZ_CP022691.1\|WP_004151296.1\|4115331_4116762_-\|replicative-DNA-helicase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	7.87266e-159
NZ_CP022691.1\|WP_004151305.1\|4120436_4121282_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.75286e-34
NZ_CP022691.1\|WP_004151291.1\|4112766_4113414_-\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	8.71432e-11
NZ_CP022691.1\|WP_004151310.1\|4122110_4122767_+\|DNA-methyltransferase	gnl\|CDD\|227069	COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription].	6.42213e-22

>NZ_CP022691.1|WP_004151296.1|4115331_4116762_-|replicative-DNA-helicase
MTSDFMTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYARPHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKILAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEQKPTKRGGF
>NZ_CP022691.1|WP_004151295.1|4115038_4115332_-|protein-ren
MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEIAGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NZ_CP022691.1|WP_004151294.1|4114535_4115042_-|hypothetical-protein
MTITLQAVNKLIASMESAGELSIREQKFLKLAKEFRICSASLDAAIKTGNMLADQNAQLAAENVALKDINAWCKTDAFKNMYREFKTAEALGCSDADCMHDAMLVAIMHAPATPATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGIALAADDFAKQLREGADK
>NZ_CP022691.1|WP_004151293.1|4113586_4114429_-|translation-repressor-RelE
MTDITELAQSLKAAAEKASNGDWVKESGDGWEACCSANDQANGGFIIAHFVGPDAAENCEFVQAANPANVLALVEALEYYKSREERVTSLVRDNSKSWDELYRQVEAKGKRNVELVEALESEKRICATWRKTAESTSEKLEKAQAAERRWHRVASRVHEQACESDVKIDELEAIRAAAEKLVRCKGRYHSEQNYRALAALFGVNTPDLPPLEHENVHYADAAEMEIEALRQRIAELESRTVKLPPRVDSSNVPFAGNAWNCCLDEVEKRLTAAGIKMEAE
>NZ_CP022691.1|WP_004151291.1|4112766_4113414_-|DUF551-domain-containing-protein
MTNNQLAENSVIQLLNSVKLARDNAELADNRVDHSFYYALTIALEELQERRKAAMDSEPVLWAWHHLDMWHVTSHDGRARDLWLSGFKVIPLYRHAQPVLVIPDEMTAEQAYEIGYYYGDPVDVFARGANWMRQHIIDSTLAAAPQSPGSDPATVPGKWISVSERMPENDGAYLCWDNRYVTTYAFIFGAWQANQFIAKNITHWMPLPAGPQEVR
>NZ_CP022691.1|WP_004151290.1|4112518_4112767_-|hypothetical-protein
MPRASTVGEIVRSDMVQSGALRKRYWQSSSLPFREKRKHRPQPCHFRRDRVLQKIMRREMEAMVNRLSKIDASKILEEVGDA
>NZ_CP022691.1|WP_004151288.1|4111810_4112266_-|hypothetical-protein
MNIPQCGIKLHNGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NZ_CP022691.1|WP_004151287.1|4111640_4111811_-|hypothetical-protein
MSSLLAKVIERGIFRVPARRKRKVEDKPSDIPTLKDYTARLVDKKWLRLRARRPHA
>NZ_CP022691.1|WP_004151286.1|4111012_4111648_-|protein-ninG
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRKARLAELRPNGYYKAQAQKAFNAYIRARDAALPCISCGETNPPDLHGGQWDCGHFKTVGAYPELRFEERNAHKQCKSCNAGAGKYTAKELTVAQQYEAGLVARYGQEYVDWLNGPHEMTNYRREDFIRIRDEYRAKLKALKQREAA
>NZ_CP022691.1|WP_004151285.1|4110878_4111016_-|hypothetical-protein
MNHDIIERIRDRWKKLRLLRSRGTVLVDYLILRNFIASLSRGSYE
>NZ_CP022691.1|WP_001548453.1|4117875_4118097_-|hypothetical-protein
MESSTTRNKVEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAILISNRPGEKGDFEA
>NZ_CP022691.1|WP_004151299.1|4118137_4118371_-|transcriptional-regulator
MKNPAVEKAISIAGSQKELAKRCGKAQSTICDWLNGKKRISPVHVPDLVAAVNGEIKAYEFRPDLPSIFPPPNNSAA
>NZ_CP022691.1|WP_004151300.1|4118498_4119188_+|helix-turn-helix-transcriptional-regulator
MDFSERLARAMSLAGYTQGRLAKEVGMAQSSVNKLLNGANGSRKTVEIASVLGVRPEWLSTGAGEMLADSIQITQMQTPVTPQNGIYRVDVLDVKASAGPGALITNDFIETIRAIEYTSEQARSLFGNRPAHHIKVITVTGDSMDTTISPGDEIFVDISSTHFDSDGVYVFVFGKTLHVKRLQMQRDRLAVISDNPIYEKWYVEPGDEDQFYVMARVLLRQSIEYKRFA
>NZ_CP022691.1|WP_004151301.1|4119538_4119754_+|hypothetical-protein
MSKENNGGPAYPTQGYEGLTVRDYFAAKAMQGWLAGYPAGINHPARSEEGFTVAELSYLMADAMLKAREEV
>NZ_CP022691.1|WP_004151303.1|4119853_4120048_+|hypothetical-protein
MANSIPNNGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRSIEPNLVPAGTH
>NZ_CP022691.1|WP_004151304.1|4120136_4120421_+|hypothetical-protein
MNAYRAYDVIEERKWAEQTLTEEKQKWIEDRAKEVFDSLPEDPYAALRQSVSSKSFPYEGLRSDKAGEVYNDLRTAIAYAQAEYDWDHRTGCPF
>NZ_CP022691.1|WP_004151305.1|4120436_4121282_+|phage-recombination-protein-Bet
MANELVITASSLAERGIDGATWSALKNSIYPGAKDESVMMALDYCRARNLDPLLKPVHLVPMSVKDSKSGKSEWRDVVMPGIGLYRIQADRSGDYAGAKEPEFGPDVTLTLTGIEVTVPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATAGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSTPEAPPLVASEETLQAITDLLTSLNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP022691.1|WP_004151306.1|4121278_4121959_+|exonuclease
MTPEIILERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNAKALAWGKQYEADARTLFEFTTDVKVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFISKMDESLAEIGFTFGEQWK
>NZ_CP022691.1|WP_004151308.1|4121955_4122114_+|DUF1317-domain-containing-protein
MKHYRDAITVGKVKCMYSVLHRGWLMPSGEVVRNPLKAQRLAEELDTKRGAR
>NZ_CP022691.1|WP_004151310.1|4122110_4122767_+|DNA-methyltransferase
MKRYSLIYADPAWSYGNTISNGAAVDHYPTMSLLDMKRLPVWELAADNAVLAMWYTGTHNQEAIELAEAWGFTVRTMKGFTWVKLNQLAELRITKALAEGDVTDFYDFLALLNAETRMNGGNHTRANTEDVLIATRGAGLERKHAGIKQVVYSPLGAHSEKPWEVRHRLELLYGDVPRIELFSRSAAPGWSHWGNQCATASVELIPGCAIDVVKTEAA

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Crispr_ID: NZ_CP022691_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022691_2

4601115-4601209

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022691_2

>merge|NZ_CP022691|2|4601115-4601209|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP022691|2|2|4601115-4601209|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022691.1\|WP_014342872.1\|4599444_4599633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022691.1\|WP_002888329.1\|4607170_4608457_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP022691.1\|WP_002888327.1\|4608462_4609452_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP022691.1\|WP_002888368.1\|4588513_4590223_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP022691.1\|WP_004151368.1\|4595289_4598196_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP022691.1\|WP_002888332.1\|4603696_4604524_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP022691.1\|WP_002888348.1\|4598208_4598868_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP022691.1\|WP_020805925.1\|4611455_4611659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022691.1\|WP_002888323.1\|4610272_4610650_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP022691.1\|WP_002888345.1\|4599661_4601026_-\|citrate/acetate-antiporter	unknown	unknown	gnl\|CDD\|377030
NZ_CP022691.1\|WP_002888324.1\|4609448_4610270_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
NZ_CP022691.1\|WP_002888347.1\|4598942_4599482_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP022691.1\|WP_002888321.1\|4610654_4611503_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP022691.1\|WP_002888337.1\|4602965_4603664_+\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP022691.1\|WP_004147026.1\|4604767_4607116_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP022691.1\|WP_002888357.1\|4590233_4591736_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP022691.1\|WP_002888340.1\|4601350_4602976_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP022691.1\|WP_002888370.1\|4587330_4588176_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP022691.1\|WP_002888349.1\|4592744_4595102_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP022691.1\|WP_002888353.1\|4591873_4592569_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181

Protein	Function_ID	Function_description	E-value
NZ_CP022691.1\|WP_002888327.1\|4608462_4609452_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP022691.1\|WP_002888329.1\|4607170_4608457_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP022691.1\|WP_002888368.1\|4588513_4590223_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP022691.1\|WP_002888337.1\|4602965_4603664_+\|two-component-response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP022691.1\|WP_002888332.1\|4603696_4604524_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP022691.1\|WP_002888348.1\|4598208_4598868_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP022691.1\|WP_002888323.1\|4610272_4610650_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP022691.1\|WP_002888345.1\|4599661_4601026_-\|citrate/acetate-antiporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP022691.1\|WP_002888324.1\|4609448_4610270_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP022691.1\|WP_002888347.1\|4598942_4599482_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP022691.1\|WP_002888321.1\|4610654_4611503_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP022691.1\|WP_004151368.1\|4595289_4598196_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP022691.1\|WP_004147026.1\|4604767_4607116_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP022691.1\|WP_002888357.1\|4590233_4591736_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP022691.1\|WP_002888340.1\|4601350_4602976_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP022691.1\|WP_002888370.1\|4587330_4588176_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP022691.1\|WP_002888349.1\|4592744_4595102_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP022691.1\|WP_002888353.1\|4591873_4592569_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0

>NZ_CP022691.1|WP_002888345.1|4599661_4601026_-|citrate/acetate-antiporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP022691.1|WP_014342872.1|4599444_4599633_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>NZ_CP022691.1|WP_002888347.1|4598942_4599482_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP022691.1|WP_002888348.1|4598208_4598868_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP022691.1|WP_004151368.1|4595289_4598196_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP022691.1|WP_002888349.1|4592744_4595102_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP022691.1|WP_002888353.1|4591873_4592569_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP022691.1|WP_002888357.1|4590233_4591736_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP022691.1|WP_002888368.1|4588513_4590223_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP022691.1|WP_002888370.1|4587330_4588176_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP022691.1|WP_002888340.1|4601350_4602976_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP022691.1|WP_002888337.1|4602965_4603664_+|two-component-response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP022691.1|WP_002888332.1|4603696_4604524_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP022691.1|WP_004147026.1|4604767_4607116_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP022691.1|WP_002888329.1|4607170_4608457_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP022691.1|WP_002888327.1|4608462_4609452_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP022691.1|WP_002888324.1|4609448_4610270_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP022691.1|WP_002888323.1|4610272_4610650_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP022691.1|WP_002888321.1|4610654_4611503_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP022691.1|WP_020805925.1|4611455_4611659_-|hypothetical-protein
MFPVAGFVFFLKRSPGRQIAHKRRSGKALAATRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP022691_1	1.1\|4117192\|36\|NZ_CP022691\|CRISPRCasFinder	4117192-4117227	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NZ_CP022691_1	1.1\|4117192\|36\|NZ_CP022691\|CRISPRCasFinder	4117192-4117227	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NZ_CP022691_1	1.1\|4117192\|36\|NZ_CP022691\|CRISPRCasFinder	4117192-4117227	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 1.1|4117192|36|NZ_CP022691|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|4117192|36|NZ_CP022691|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|4117192|36|NZ_CP022691|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

446325 : 515700

uncultured_Caudovirales_phage(61.11%)

terminase,capsid,integrase,tRNA,head,portal,protease,tail

attL 463930:463947|attR 479925:479942

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|446325_447273_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|447287_447797_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|447925_449050_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|449021_449495_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|449520_450063_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|450067_450640_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|450643_451462_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|451458_451716_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|451691_452246_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|458038_458260_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|458553_461664_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|461676_462816_-	MexX family efflux pump subunit	NA	NA	NA	NA
WP_004150972.1\|463194_463845_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
463930:463947	attL	NA	NA	NA	NA
WP_004150971.1\|464120_465347_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|465439_466381_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|466562_466847_+	transcriptional regulator	NA	NA	NA	NA
WP_004150969.1\|466857_467637_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_024194847.1\|467760_467955_-	hypothetical protein	NA	NA	NA	NA
WP_004150968.1\|468178_468358_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.6e-26	94.9
WP_001549752.1\|468350_468539_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|468531_468846_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|468842_469211_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|469207_469573_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|469572_471708_+	hypothetical protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|472050_472386_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|472434_472947_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|473210_474377_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|474428_474989_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|474990_476232_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|476228_476564_+\|head,tail	head-tail adaptor	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|476560_476860_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|476859_477303_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004198610.1\|477429_477621_+	hypothetical protein	NA	NA	NA	NA
WP_000113647.1\|477578_477935_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|477918_479580_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
WP_004150954.1\|479582_479774_+	hypothetical protein	NA	NA	NA	NA
WP_000462905.1\|479927_480224_-	Fis family transcriptional regulator	NA	NA	NA	NA
479925:479942	attR	NA	NA	NA	NA
WP_004144972.1\|480248_481214_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_071526683.1\|481371_481566_-	hypothetical protein	NA	NA	NA	NA
WP_002918745.1\|481571_482453_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_002918742.1\|482464_483916_-	sodium/panthothenate symporter	NA	NA	NA	NA
WP_002918740.1\|483905_484148_-	membrane protein	NA	NA	NA	NA
WP_002918738.1\|484258_485608_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_002918736.1\|485618_486086_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_002918732.1\|486108_486561_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_002918689.1\|486784_487393_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_002918688.1\|487392_488394_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_002918687.1\|488622_488814_+	hypothetical protein	NA	NA	NA	NA
WP_002918686.1\|488893_490834_+	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_004149975.1\|490955_491162_-	hypothetical protein	NA	NA	NA	NA
WP_002918653.1\|491139_492183_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_004149974.1\|492253_493246_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_002918648.1\|493245_493734_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_002918646.1\|493741_494323_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002918644.1\|494325_495795_+	ribonuclease G	NA	NA	NA	NA
WP_004150952.1\|495832_499630_+	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_002918642.1\|499718_501164_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_002918641.1\|501199_502129_-	transcriptional regulator	NA	NA	NA	NA
WP_002918640.1\|502260_502464_+	protein AaeX	NA	NA	NA	NA
WP_002918639.1\|502471_503404_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002918632.1\|503409_505377_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002918629.1\|505456_505732_+	hypothetical protein	NA	NA	NA	NA
WP_002918627.1\|505782_506049_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_002918626.1\|506147_506411_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_002918625.1\|506786_507257_-	arginine repressor	NA	NA	NA	NA
WP_002918570.1\|507671_508610_+	malate dehydrogenase	NA	NA	NA	NA
WP_002918568.1\|508746_509805_-\|protease	serine endoprotease DegS	NA	NA	NA	NA
WP_002918566.1\|509892_511260_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
WP_002918565.1\|511433_511832_-	hypothetical protein	NA	NA	NA	NA
WP_004144945.1\|512022_513150_+	cell division protein ZapE	NA	NA	NA	NA
WP_002918559.1\|513415_513844_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_000829818.1\|513859_514252_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_004188421.1\|514361_514565_-	hypothetical protein	NA	NA	NA	NA
WP_002918467.1\|514563_515202_+	stringent starvation protein A	NA	NA	NA	NA
WP_002918465.1\|515205_515700_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8

DBSCAN-SWA_2

1350617 : 1416968

Salmonella_phage(36.36%)

terminase,holin,capsid,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151980.1\|1350617_1352084_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1352151_1353729_+	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
WP_004243821.1\|1353920_1355171_+	DUF4102 domain-containing protein	A0A1X9TCT6	Enterobacter_phage	1.8e-206	85.1
WP_004243823.1\|1355187_1355379_-	hypothetical protein	NA	NA	NA	NA
WP_004243826.1\|1355375_1355969_-	adenine methylase	T1SA14	Salmonella_phage	2.1e-109	91.9
WP_004243831.1\|1355965_1356715_-	hypothetical protein	R9VWB9	Serratia_phage	3.1e-73	56.1
WP_004243833.1\|1356711_1356870_-	DUF1317 domain-containing protein	T1SAR0	Salmonella_phage	2.5e-17	80.4
WP_004243834.1\|1356862_1357156_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	1.2e-31	70.1
WP_004144294.1\|1357265_1357514_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_004243835.1\|1357562_1358444_-	DNA recombination protein RecT	T1SBJ5	Salmonella_phage	1.7e-131	82.3
WP_004243836.1\|1358440_1359262_-	exonuclease VIII/RecE-like protein	A0A193GYK2	Enterobacter_phage	8.1e-131	80.2
WP_004243838.1\|1359258_1359558_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	1.8e-19	53.5
WP_042651015.1\|1359565_1360468_-	hypothetical protein	A0A059VK18	Pseudomonas_phage	2.8e-36	51.6
WP_004152539.1\|1360880_1361462_-	XRE family transcriptional regulator	Q858D7	Salmonella_phage	1.9e-65	64.8
WP_004152538.1\|1361615_1361849_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004152537.1\|1361995_1362205_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004207253.1\|1362204_1362972_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_004152535.1\|1362968_1363754_+	replication protein	A0A193GYX1	Enterobacter_phage	8.2e-133	87.4
WP_004152534.1\|1363873_1364221_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	5.0e-50	82.6
WP_004152532.1\|1364413_1364824_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	3.1e-14	42.2
WP_004152531.1\|1364807_1364999_+	hypothetical protein	NA	NA	NA	NA
WP_004152530.1\|1364995_1365421_+	hypothetical protein	NA	NA	NA	NA
WP_004152529.1\|1365417_1366161_+	hypothetical protein	A6N3G8	Burkholderia_virus	1.5e-19	59.5
WP_004141386.1\|1366331_1366544_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_004152527.1\|1366540_1367209_+	DUF551 domain-containing protein	Q6UAT8	Klebsiella_phage	1.5e-05	52.5
WP_004152526.1\|1367201_1367441_+	hypothetical protein	G8C7S3	Escherichia_phage	4.6e-10	48.0
WP_004152525.1\|1367440_1367779_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	4.7e-45	80.0
WP_004152524.1\|1367853_1368111_+	hypothetical protein	NA	NA	NA	NA
WP_004152523.1\|1368188_1368773_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.4e-89	88.1
WP_020314691.1\|1368769_1370245_+	hypothetical protein	Q858H3	Salmonella_phage	3.2e-279	92.7
WP_004152473.1\|1370288_1370810_-	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	7.8e-47	55.2
WP_004225268.1\|1371305_1371494_+	hypothetical protein	NA	NA	NA	NA
WP_004152472.1\|1371515_1371719_+	hypothetical protein	NA	NA	NA	NA
WP_004152471.1\|1371722_1373402_+\|tail	tail protein	T1S9Z7	Salmonella_phage	3.4e-192	58.9
WP_004152470.1\|1373398_1373704_+	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
WP_004152469.1\|1373746_1373944_+	hypothetical protein	NA	NA	NA	NA
WP_004152468.1\|1373985_1374384_+	peptidase	T1SAP9	Salmonella_phage	5.6e-37	59.5
WP_004152467.1\|1374396_1375404_+\|capsid	phage capsid protein	T1S9H9	Salmonella_phage	2.7e-181	92.5
WP_004152466.1\|1375413_1375806_+	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
WP_004152465.1\|1375798_1376077_+	hypothetical protein	T1SA01	Salmonella_phage	6.7e-21	58.9
WP_004153043.1\|1376125_1376737_+	hypothetical protein	T1SAQ2	Salmonella_phage	1.2e-46	48.8
WP_004152463.1\|1376736_1379214_+	hypothetical protein	G9L6D0	Escherichia_phage	3.6e-267	56.5
WP_004243848.1\|1379215_1379686_+	hypothetical protein	Q858G2	Salmonella_phage	5.0e-45	55.9
WP_004243851.1\|1379678_1380176_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	7.5e-23	41.7
WP_004243852.1\|1380188_1382933_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	1.2e-93	39.2
WP_004243853.1\|1382932_1386322_+	hypothetical protein	G9L6D4	Escherichia_phage	6.3e-121	42.0
WP_004152458.1\|1386331_1386946_+	hypothetical protein	NA	NA	NA	NA
WP_004221292.1\|1386978_1387131_-	hypothetical protein	G9L6D9	Escherichia_phage	1.9e-14	85.7
WP_004152457.1\|1387220_1387619_-	hypothetical protein	NA	NA	NA	NA
WP_004152456.1\|1387623_1387806_-	hypothetical protein	NA	NA	NA	NA
WP_004152455.1\|1387996_1388692_-	hypothetical protein	A0A193GYJ9	Enterobacter_phage	4.4e-61	52.7
WP_004152454.1\|1389072_1389270_-	type II toxin-antitoxin system HicA family toxin	A0A0M4RCZ9	Salmonella_phage	2.0e-19	69.8
WP_004152453.1\|1389273_1389531_-	DUF1902 domain-containing protein	A0A0M4R2Z9	Salmonella_phage	2.3e-12	54.1
WP_004243906.1\|1389621_1389882_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	7.1e-25	65.1
WP_004152765.1\|1389959_1391444_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|1391443_1391695_-	hypothetical protein	NA	NA	NA	NA
WP_002913857.1\|1391979_1394241_+\|tail	tail fiber protein	A0A0A8J9V7	Klebsiella_phage	3.7e-69	35.8
WP_004146394.1\|1394503_1394908_+	membrane protein	T1SA79	Salmonella_phage	9.3e-56	84.1
WP_002913854.1\|1394894_1395200_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	1.6e-39	82.4
WP_002913853.1\|1395189_1395819_+	glycoside hydrolase	Q858F0	Salmonella_phage	1.8e-90	76.9
WP_002913851.1\|1395815_1396298_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	2.8e-59	76.9
WP_004152009.1\|1396517_1398386_-	phosphatase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_004162150.1\|1398369_1399548_-	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_002913847.1\|1399841_1401074_-	MFS transporter	NA	NA	NA	NA
WP_002913846.1\|1401171_1402059_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002913843.1\|1402155_1402347_-	DUF2633 domain-containing protein	G9L6F2	Escherichia_phage	3.3e-19	79.3
WP_002913841.1\|1402699_1404928_+	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_002913839.1\|1404981_1406514_-	exopolyphosphatase	NA	NA	NA	NA
WP_002913838.1\|1406517_1408578_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_004152007.1\|1408758_1409400_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.2e-28	41.1
WP_002913836.1\|1409396_1410434_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
WP_002913833.1\|1410697_1411591_+	beta-glucoside kinase	NA	NA	NA	NA
WP_002913829.1\|1411600_1413034_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002913827.1\|1413251_1413878_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002913824.1\|1413973_1415260_+	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_020947395.1\|1415358_1416060_+	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913812.1\|1416056_1416968_-\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8

DBSCAN-SWA_3

1727110 : 1734017

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1727110_1727974_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_002912638.1\|1727984_1728758_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.3
WP_002912636.1\|1729000_1729894_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_002912635.1\|1730139_1731501_-	U32 family peptidase	Q6DW11	Phage_TP	2.5e-206	94.5
WP_002912634.1\|1731819_1732542_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	6.4e-31	33.2
WP_004151135.1\|1732538_1734017_-	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	1.1e-29	28.3

DBSCAN-SWA_4

2102964 : 2133555

Microcystis_virus(33.33%)

transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910645.1\|2102964_2104305_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004152316.1\|2104301_2104955_+	type VI secretion system protein ImpK	NA	NA	NA	NA
WP_004152317.1\|2104958_2106656_+	hypothetical protein	NA	NA	NA	NA
WP_004221091.1\|2107114_2108308_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_020320395.1\|2108273_2109596_+	type VI secretion system tip protein VgrG	NA	NA	NA	NA
WP_004152319.1\|2109619_2110975_+	hypothetical protein	NA	NA	NA	NA
WP_002910593.1\|2110975_2111485_+	hypothetical protein	NA	NA	NA	NA
WP_002910591.1\|2111481_2111988_+	hypothetical protein	NA	NA	NA	NA
WP_002910586.1\|2112224_2112734_+	hypothetical protein	NA	NA	NA	NA
WP_004152320.1\|2113027_2114308_+	hypothetical protein	NA	NA	NA	NA
WP_022644641.1\|2114339_2115308_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	6.5e-180	96.3
WP_004199326.1\|2115449_2115632_+	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|2115628_2115958_+	hypothetical protein	NA	NA	NA	NA
WP_002910551.1\|2115954_2116461_+	hypothetical protein	NA	NA	NA	NA
WP_002910549.1\|2116506_2116737_+	hypothetical protein	NA	NA	NA	NA
WP_002910547.1\|2117974_2118280_+	hypothetical protein	NA	NA	NA	NA
WP_002910544.1\|2118301_2119195_+	sulfatase-modifying factor 1	A0A7H6	Microcystis_virus	6.7e-14	30.5
WP_004152633.1\|2119378_2120272_+	sulfatase-modifying factor 1	A0A075BSL8	Microcystis_phage	1.7e-12	27.3
WP_002910539.1\|2120447_2121341_+	sulfatase-modifying factor 1	A0A075BSL8	Microcystis_phage	2.8e-12	27.1
WP_004152632.1\|2121516_2122407_+	sulfatase-modifying factor 1	A0A7H6	Microcystis_virus	4.1e-11	29.8
WP_000019473.1\|2122743_2123724_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_071531187.1\|2123762_2123885_-	ABC transporter	NA	NA	NA	NA
WP_029779706.1\|2123847_2124084_+	hypothetical protein	NA	NA	NA	NA
WP_004227463.1\|2124272_2124530_+	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|2124827_2125094_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004198077.1\|2125097_2126255_+	hypothetical protein	NA	NA	NA	NA
WP_004152262.1\|2126238_2129649_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_002910495.1\|2129782_2131546_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002910494.1\|2131545_2132592_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002910493.1\|2132572_2133109_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152261.1\|2133111_2133555_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_5

2796251 : 2807138

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151613.1\|2796251_2799359_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004151612.1\|2799413_2800679_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2800709_2801798_-	hypothetical protein	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2801884_2802145_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2802442_2803303_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2803323_2804085_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004151610.1\|2804345_2805248_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_004151609.1\|2805259_2806525_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_002210516.1\|2806517_2807138_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_6

3034633 : 3074404

uncultured_Caudovirales_phage(35.42%)

terminase,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152576.1\|3034633_3035500_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
WP_004152575.1\|3035499_3036273_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152574.1\|3036269_3037466_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|3037465_3037819_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|3037820_3038474_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152571.1\|3038527_3039094_-	hypothetical protein	NA	NA	NA	NA
WP_004173705.1\|3039130_3039316_+	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|3039368_3039710_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|3039709_3040732_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004152568.1\|3040734_3041037_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	55.2
WP_004152567.1\|3041037_3041637_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004152566.1\|3041636_3043640_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|3043629_3043782_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|3043817_3044243_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_085955245.1\|3044569_3045761_+\|transposase	IS3-like element ISKpn18 family transposase	U5P429	Shigella_phage	3.5e-50	43.5
WP_004152178.1\|3045702_3045993_-	DUF3277 domain-containing protein	A0A2H4J619	uncultured_Caudovirales_phage	2.6e-23	85.5
WP_004152177.1\|3046003_3047149_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|3047152_3047593_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|3047687_3048074_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|3048073_3048580_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|3048576_3048996_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|3048964_3049246_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|3049285_3050227_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|3050238_3050733_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_004199270.1\|3050736_3051939_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_004152174.1\|3051990_3052539_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|3052594_3054046_-	hypothetical protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|3054283_3055684_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004152171.1\|3055634_3056387_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-12	66.0
WP_004152170.1\|3056488_3056809_-	hypothetical protein	NA	NA	NA	NA
WP_004153952.1\|3057043_3057433_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|3057429_3057960_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|3057962_3058211_-	hypothetical protein	NA	NA	NA	NA
WP_004152167.1\|3058616_3059399_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|3059395_3059872_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004198233.1\|3059868_3060831_-	zinc-binding domain of primase-helicase family protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|3060832_3062491_-	helicase conserved C-terminal domain protein	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152163.1\|3062798_3063092_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	2.8e-38	97.6
WP_004152162.1\|3063066_3063288_-	XRE family transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|3063385_3064054_+	LexA family transcriptional repressor	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|3064224_3064539_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|3064531_3064720_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152158.1\|3064889_3065255_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152157.1\|3065247_3065502_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004152156.1\|3065688_3066114_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|3066110_3066305_+	hypothetical protein	NA	NA	NA	NA
WP_004152154.1\|3066301_3067129_+	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152153.1\|3067233_3067752_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|3067757_3068468_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|3068457_3068682_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004152150.1\|3068678_3068891_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_004152149.1\|3068887_3069367_+	hypothetical protein	NA	NA	NA	NA
WP_004152148.1\|3069545_3069788_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|3069768_3070950_-	DUF4102 domain-containing protein	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|3071146_3071695_+\|protease	protease PfpI family	NA	NA	NA	NA
WP_004152145.1\|3071893_3073426_-	phosphohydrolase	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3073642_3074404_-	3-oxoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_7

3107337 : 3167453

Klebsiella_phage(24.56%)

terminase,holin,integrase,transposase,tail

attL 3107119:3107134|attR 3164759:3164774

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3107119:3107134	attL	NA	NA	NA	NA
WP_002901815.1\|3107337_3108009_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|3108195_3109023_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|3109098_3110364_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|3110365_3110785_-	translesion error-prone DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004152765.1\|3110864_3112349_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3112348_3112600_-	hypothetical protein	NA	NA	NA	NA
WP_004152776.1\|3113246_3113669_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_004166391.1\|3113746_3114196_-	recombinase family protein	A0A286S1P7	Klebsiella_phage	1.4e-73	98.0
WP_001067855.1\|3114261_3114966_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004153425.1\|3115012_3115123_-	DNA invertase	A0A286S1P7	Klebsiella_phage	4.6e-10	100.0
WP_004152703.1\|3115214_3117158_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.1e-37	69.8
WP_004152702.1\|3117399_3117999_+	hypothetical protein	NA	NA	NA	NA
WP_004152701.1\|3118032_3118227_-	hypothetical protein	NA	NA	NA	NA
WP_004152700.1\|3118223_3118955_-	hypothetical protein	NA	NA	NA	NA
WP_022644627.1\|3118958_3121913_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	4.2e-44	68.3
WP_004152652.1\|3121989_3125058_-	hypothetical protein	A0A286S259	Klebsiella_phage	0.0e+00	97.5
WP_004152651.1\|3125054_3125435_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
WP_004152650.1\|3125444_3125927_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	1.7e-80	94.4
WP_004152649.1\|3126107_3126572_-	hypothetical protein	A0A286S298	Klebsiella_phage	6.7e-58	67.8
WP_004152648.1\|3126886_3127222_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|3127412_3128393_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004217331.1\|3128505_3131403_-\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	1.6e-104	32.7
WP_004217333.1\|3132080_3132437_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_004217335.1\|3132513_3132690_-	hypothetical protein	NA	NA	NA	NA
WP_004226994.1\|3132857_3133340_-	hypothetical protein	NA	NA	NA	NA
WP_004217341.1\|3133393_3134566_-	hypothetical protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_004190640.1\|3134589_3134982_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_004217343.1\|3134978_3135530_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.3e-28	39.9
WP_004217344.1\|3135531_3135915_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
WP_004190646.1\|3135901_3136135_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
WP_004217346.1\|3136144_3136399_-	hypothetical protein	J9Q7U0	Salmonella_phage	1.0e-20	52.4
WP_004217348.1\|3136400_3136796_-	hypothetical protein	A0A1B1P9F2	Acinetobacter_phage	4.3e-13	38.5
WP_004190653.1\|3137117_3138071_-	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
WP_004217351.1\|3138081_3138867_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.0e-66	63.9
WP_019405022.1\|3139397_3140510_-	hypothetical protein	I6PD76	Cronobacter_phage	5.6e-111	55.1
WP_004218551.1\|3140493_3141894_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	1.1e-127	53.5
WP_004190663.1\|3141893_3143201_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
WP_004218556.1\|3143178_3144183_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
WP_004244013.1\|3144731_3144917_-	hypothetical protein	NA	NA	NA	NA
WP_004218558.1\|3145045_3145291_-	DUF2560 domain-containing protein	A0A286N2R1	Klebsiella_phage	4.6e-34	96.3
WP_019405025.1\|3146104_3146299_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.4e-25	89.1
WP_004190672.1\|3146249_3146525_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_004190674.1\|3146521_3146866_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
WP_004218565.1\|3146862_3147402_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_004218567.1\|3147398_3147710_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.8e-49	100.0
WP_004232548.1\|3149447_3150137_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218534.1\|3150136_3150277_-	hypothetical protein	NA	NA	NA	NA
WP_004218533.1\|3150273_3150912_-	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218532.1\|3150904_3151573_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004243010.1\|3151569_3151737_-	hypothetical protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218531.1\|3151717_3152185_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
WP_004218530.1\|3152705_3153734_+	hypothetical protein	NA	NA	NA	NA
WP_004196831.1\|3153941_3154187_-	hypothetical protein	NA	NA	NA	NA
WP_004218528.1\|3154242_3154545_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004201118.1\|3154541_3155390_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004201117.1\|3155386_3156247_-	phage replication protein O	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|3156332_3156554_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3156594_3156822_-	transcriptional regulator	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|3156933_3157632_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_019405077.1\|3157654_3157774_+	hypothetical protein	NA	NA	NA	NA
WP_004201109.1\|3157919_3158996_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|3159077_3159281_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004135674.1\|3159709_3159904_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|3159992_3160277_+	hypothetical protein	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|3160292_3161138_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_004201102.1\|3161423_3162104_+	exonuclease	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|3162100_3162529_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|3162525_3163188_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004190725.1\|3163184_3163499_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_004153574.1\|3163395_3164583_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	1.1e-120	52.4
WP_004151901.1\|3164759_3165650_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
3164759:3164774	attR	NA	NA	NA	NA
WP_004140266.1\|3165649_3166642_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3166643_3167453_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_8

3543746 : 3637897

Salmonella_phage(55.93%)

capsid,plate,integrase,tRNA,head,transposase,portal,protease,tail

attL 3599272:3599290|attR 3637972:3637990

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3543746_3545039_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3545129_3546473_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3546481_3547093_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
WP_004150846.1\|3547215_3551469_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3551604_3552099_-	leucine-responsive regulatory protein	NA	NA	NA	NA
WP_002898019.1\|3552631_3553600_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|3553714_3555481_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3555481_3557203_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3557247_3557949_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3558302_3558521_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3558641_3560921_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3560951_3561269_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3561594_3561816_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_071528213.1\|3561770_3561953_-	hypothetical protein	NA	NA	NA	NA
WP_004150848.1\|3561892_3563833_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3563829_3564945_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3565091_3566750_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3567169_3567865_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3567980_3568880_+	membrane protein	NA	NA	NA	NA
WP_002896412.1\|3569023_3570676_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3570686_3571655_+	NADH oxidoreductase	NA	NA	NA	NA
WP_085666582.1\|3571605_3571809_+	hypothetical protein	NA	NA	NA	NA
WP_002896408.1\|3571866_3572301_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3572452_3574171_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3574209_3575211_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3575221_3576664_+	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_002896399.1\|3576751_3577765_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3577761_3578592_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3578623_3579763_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_004147767.1\|3579815_3579995_+	hypothetical protein	NA	NA	NA	NA
WP_002896394.1\|3580640_3581156_+	lipoprotein	NA	NA	NA	NA
WP_002896392.1\|3581382_3582111_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3582131_3582863_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3582869_3583586_+	arginine transporter permease subunit ArtQ	NA	NA	NA	NA
WP_004150852.1\|3583585_3584254_+	arginine transporter permease subunit ArtM	NA	NA	NA	NA
WP_002896384.1\|3584437_3585169_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3585211_3586684_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3586680_3587397_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3587475_3588603_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3588644_3589133_-	DUF2593 domain-containing protein	NA	NA	NA	NA
WP_002896372.1\|3589190_3590036_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3590032_3590986_-	putrescine ABC transporter permease	NA	NA	NA	NA
WP_002896370.1\|3590996_3592130_-	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3592293_3593406_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3593754_3594234_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3594322_3595225_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3596046_3596334_-	membrane protein	NA	NA	NA	NA
WP_002896352.1\|3596536_3596800_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3596806_3597190_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|3597456_3599142_+	transporter	NA	NA	NA	NA
3599272:3599290	attL	NA	NA	NA	NA
WP_000972391.1\|3599361_3599580_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3599671_3600772_-	late control protein D	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|3600768_3601254_-\|tail	tail assembly protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896222.1\|3601250_3603878_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896220.1\|3603870_3603990_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3604004_3604304_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3604356_3604872_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3604881_3606054_-\|tail	tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3606192_3607269_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896188.1\|3607298_3607502_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3607498_3608230_-	hypothetical protein	NA	NA	NA	NA
WP_004152882.1\|3608233_3611185_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_004150856.1\|3611186_3611786_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3611778_3612687_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_002896179.1\|3612673_3613036_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896177.1\|3613032_3613605_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_032188295.1\|3614044_3614131_+	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|3614169_3615150_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_094389604.1\|3615148_3615592_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3615588_3616035_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3616027_3616459_-\|tail	tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896168.1\|3616554_3616983_-	hypothetical protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3616979_3617363_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3617367_3617877_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3617857_3618073_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3618076_3618280_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|3618279_3618744_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|3618839_3619490_-	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3619493_3620552_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3620568_3621402_-\|capsid	phage capsid protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3621544_3623311_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3623310_3624336_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|3624397_3626140_-	hypothetical protein	NA	NA	NA	NA
WP_000700647.1\|3626415_3627093_-	hypothetical protein	NA	NA	NA	NA
WP_001316229.1\|3627207_3627513_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3627451_3627640_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004150862.1\|3627793_3630208_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|3630204_3631062_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|3631058_3631286_-	hypothetical protein	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|3631285_3631519_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|3631586_3631928_-	hypothetical protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|3631891_3632092_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3632099_3632609_-	hypothetical protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3632641_3632863_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|3633008_3633887_+	Repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|3633898_3634843_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|3634941_3636426_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3636425_3636677_-	hypothetical protein	NA	NA	NA	NA
WP_004151720.1\|3636844_3637897_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0
3637972:3637990	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4083007 : 4128282

Escherichia_phage(26.42%)

tRNA,lysis,head,integrase

attL 4076220:4076266|attR 4125354:4125400

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4076220:4076266	attL	NA	NA	NA	NA
WP_004151249.1\|4083007_4085485_-	hypothetical protein	F1C5A7	Cronobacter_phage	2.7e-198	45.6
WP_004151250.1\|4085471_4085867_-	hypothetical protein	F1C5F2	Cronobacter_phage	8.0e-36	54.0
WP_004199076.1\|4085863_4086334_-	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_004165520.1\|4086333_4086753_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.8e-30	48.5
WP_004151253.1\|4086852_4090299_-	hypothetical protein	Q5G8W8	Enterobacteria_phage	1.4e-163	48.6
WP_004151254.1\|4090391_4090895_-	hypothetical protein	NA	NA	NA	NA
WP_004151255.1\|4091022_4091808_-	phage repressor protein	A0A2L1IV39	Escherichia_phage	1.9e-84	59.7
WP_004151256.1\|4091873_4092587_-	hypothetical protein	H6WRU8	Salmonella_phage	3.9e-49	50.2
WP_004151257.1\|4092576_4092747_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
WP_004151258.1\|4092846_4093206_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.8e-16	47.5
WP_004151259.1\|4093222_4093693_-	hypothetical protein	NA	NA	NA	NA
WP_004151260.1\|4093986_4094241_-	hypothetical protein	K7PM89	Enterobacteria_phage	6.7e-20	73.0
WP_004151261.1\|4094243_4094999_-	DNA-binding protein	K7PGT4	Enterobacteria_phage	2.4e-60	51.0
WP_004151262.1\|4095174_4095852_-	hypothetical protein	F1C5E8	Cronobacter_phage	4.8e-73	57.9
WP_004151263.1\|4095904_4096657_-	DNA breaking-rejoining protein	G0ZNE6	Cronobacter_phage	5.8e-43	42.1
WP_004151264.1\|4096725_4097118_-	hypothetical protein	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
WP_004151265.1\|4097114_4097540_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_004151266.1\|4097542_4097905_-	hypothetical protein	A0A173GCE0	Salmonella_phage	1.8e-18	45.0
WP_004151267.1\|4097904_4098078_-	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-13	56.1
WP_004151268.1\|4098077_4098458_-	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	55.3
WP_004151269.1\|4098460_4098700_-	hypothetical protein	NA	NA	NA	NA
WP_004151270.1\|4098710_4099805_-	hypothetical protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
WP_004151271.1\|4099816_4100245_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
WP_004151272.1\|4100248_4101634_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.3e-154	60.0
WP_004151273.1\|4101706_4102183_-	hypothetical protein	NA	NA	NA	NA
WP_004151274.1\|4102224_4103229_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.0e-116	69.7
WP_004151275.1\|4103203_4104625_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-148	57.1
WP_004151276.1\|4104637_4106110_-	hypothetical protein	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
WP_004151277.1\|4106109_4106712_-	hypothetical protein	G8C7P2	Escherichia_phage	5.4e-76	80.9
WP_004151279.1\|4107082_4107412_+	hypothetical protein	NA	NA	NA	NA
WP_004151280.1\|4107517_4107982_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.4e-55	73.2
WP_004151281.1\|4107978_4108509_-	lysozyme	G9L6J6	Escherichia_phage	6.0e-79	78.5
WP_004151282.1\|4108511_4108760_-	hypothetical protein	NA	NA	NA	NA
WP_004151283.1\|4109669_4110359_-	antitermination protein	I6PDF8	Cronobacter_phage	1.4e-56	54.5
WP_004151284.1\|4110355_4110886_-	HNH endonuclease	A0A193GYW9	Enterobacter_phage	5.2e-30	43.1
WP_004151285.1\|4110878_4111016_-	hypothetical protein	NA	NA	NA	NA
WP_004151286.1\|4111012_4111648_-	protein ninG	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
WP_004151287.1\|4111640_4111811_-	hypothetical protein	G8C7V4	Escherichia_phage	1.3e-14	73.2
WP_004151288.1\|4111810_4112266_-	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
WP_004151290.1\|4112518_4112767_-	hypothetical protein	NA	NA	NA	NA
WP_004151291.1\|4112766_4113414_-	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	4.5e-12	32.6
WP_004151293.1\|4113586_4114429_-	translation repressor RelE	A0A2H4FRZ0	Salmonella_phage	1.8e-29	60.8
WP_004151294.1\|4114535_4115042_-	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.0e-27	59.6
WP_004151295.1\|4115038_4115332_-	protein ren	O48423	Enterobacteria_phage	3.3e-26	65.6
WP_004151296.1\|4115331_4116762_-	replicative DNA helicase	Q9MCT4	Escherichia_phage	2.6e-185	66.7
WP_004151297.1\|4116751_4117651_-	hypothetical protein	F1C5C3	Cronobacter_phage	5.4e-88	54.9
WP_001548453.1\|4117875_4118097_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004151299.1\|4118137_4118371_-	transcriptional regulator	G8C7U2	Escherichia_phage	4.3e-13	50.7
WP_004151300.1\|4118498_4119188_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.3e-61	52.2
WP_004151301.1\|4119538_4119754_+	hypothetical protein	B5WZV1	Pseudomonas_phage	1.6e-09	48.6
WP_004151303.1\|4119853_4120048_+	hypothetical protein	NA	NA	NA	NA
WP_004151304.1\|4120136_4120421_+	hypothetical protein	G8C7T1	Escherichia_phage	8.0e-30	62.8
WP_004151305.1\|4120436_4121282_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	6.9e-69	59.2
WP_004151306.1\|4121278_4121959_+	exonuclease	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
WP_004151308.1\|4121955_4122114_+	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_004151310.1\|4122110_4122767_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	87.5
WP_004151312.1\|4122763_4123531_+	hypothetical protein	D5LH17	Escherichia_phage	1.7e-66	53.4
WP_004151314.1\|4123527_4123746_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.2e-09	47.2
WP_004151316.1\|4123747_4123963_+	conjugal transfer protein TraR	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
WP_004151318.1\|4124176_4125340_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.3e-202	87.3
WP_004143017.1\|4125770_4126637_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
4125354:4125400	attR	NA	NA	NA	NA
WP_004143016.1\|4126638_4126851_+	ribosome-associated protein	NA	NA	NA	NA
WP_004143010.1\|4126896_4128282_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_10

4337819 : 4349473

Enterobacteria_phage(70.0%)

integrase

attL 4338269:4338283|attR 4361326:4361340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004144574.1\|4337819_4338923_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
4338269:4338283	attL	NA	NA	NA	NA
WP_002889940.1\|4338933_4340187_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4340539_4341730_+\|integrase	integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4341717_4342668_+	cobyrinic acid a,c-diamide synthase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_004152979.1\|4342667_4343093_+	hypothetical protein	NA	NA	NA	NA
WP_002889930.1\|4343661_4344228_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
WP_002889919.1\|4344245_4344491_-	hypothetical protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_002889917.1\|4344487_4345225_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
WP_002889915.1\|4345766_4346033_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_024940872.1\|4346029_4346587_+	CI repressor	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4346583_4346811_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4346807_4347128_+	hypothetical protein	NA	NA	NA	NA
WP_002889890.1\|4347139_4349473_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
4361326:4361340	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP022693

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11308 : 45192

Escherichia_phage(25.0%)

transposase,integrase

attL 43053:43066|attR 45515:45528

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152342.1\|11308_12577_+\|transposase	ISL3 family transposase ISKpn25	Q6V7R1	Burkholderia_virus	5.2e-60	34.7
WP_004152341.1\|12696_13170_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_004164986.1\|13334_13529_+	hypothetical protein	NA	NA	NA	NA
WP_004152340.1\|14383_15166_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.6e-51	90.2
WP_004152339.1\|15165_15498_-	hypothetical protein	NA	NA	NA	NA
WP_004152338.1\|15504_15861_-	hypothetical protein	NA	NA	NA	NA
WP_004152337.1\|15928_16258_-	hypothetical protein	NA	NA	NA	NA
WP_004152336.1\|16285_16594_-	hypothetical protein	NA	NA	NA	NA
WP_004153649.1\|16639_16846_-	hypothetical protein	NA	NA	NA	NA
WP_004234208.1\|17080_17515_-	hypothetical protein	NA	NA	NA	NA
WP_001261282.1\|17498_17729_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044770.1\|17725_18142_+	PIN domain nuclease	NA	NA	NA	NA
WP_004152334.1\|18215_18926_+	hypothetical protein	NA	NA	NA	NA
WP_072093211.1\|19657_19783_+	mercury transporter	NA	NA	NA	NA
WP_001340589.1\|19818_20241_+	mercury transporter MerC	NA	NA	NA	NA
WP_000105636.1\|20292_21987_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001277456.1\|22004_22367_+	transcriptional regulator	NA	NA	NA	NA
WP_000993386.1\|22363_22600_+	mercury resistance protein	NA	NA	NA	NA
WP_000204520.1\|22596_23304_+	EAL domain-containing protein	NA	NA	NA	NA
WP_000935452.1\|23342_24647_+\|integrase	integrase	NA	NA	NA	NA
WP_000027057.1\|25214_26075_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|27818_28523_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004152403.1\|28595_31493_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-181	37.7
WP_004152402.1\|31581_32202_+	serine recombinase	A0A219Y912	Aeromonas_phage	2.0e-09	31.5
WP_004152400.1\|33367_33727_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.6e-19	62.0
WP_004152398.1\|34230_35415_+\|transposase	ISAs1-like element ISKpn31 family transposase	NA	NA	NA	NA
WP_004152397.1\|35691_37011_+\|transposase	IS1182 family transposase ISKpn6	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004199234.1\|37260_38142_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_004152395.1\|38193_38433_-	hypothetical protein	NA	NA	NA	NA
WP_004152394.1\|38429_39209_-\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199214.1\|39205_40231_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152392.1\|40337_43367_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
43053:43066	attL	NA	NA	NA	NA
WP_004152391.1\|43476_45192_+\|integrase	integrase	NA	NA	NA	NA
WP_004152391.1\|43476_45192_+\|integrase	integrase	NA	NA	NA	NA
45515:45528	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP022694

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3157 : 13452

Escherichia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000516402.1\|3157_3820_-	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2
WP_001549893.1\|4200_4863_+	hypothetical protein	M9Q1K0	Clostridium_phage	9.7e-10	29.1
WP_001549892.1\|4949_5189_+	hypothetical protein	I6PD82	Cronobacter_phage	4.4e-21	55.1
WP_004199403.1\|5191_5548_+	hypothetical protein	A0A222YZE2	Escherichia_phage	5.5e-20	46.6
WP_002904004.1\|6420_7281_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|7301_8063_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|8053_8287_+	hypothetical protein	NA	NA	NA	NA
WP_004199413.1\|10434_13452_-\|transposase	Tn3-like element IS3000 family transposase	A0A125RQ78	Bacillus_phage	5.5e-52	24.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP022692

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5011 : 66749

uncultured_Caudovirales_phage(29.41%)

transposase,integrase,holin,protease

attL 33088:33104|attR 73653:73669

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152067.1\|5011_5935_+\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	2.1e-175	98.4
WP_004197688.1\|6607_6865_-	hypothetical protein	NA	NA	NA	NA
WP_020444838.1\|7466_8921_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_004152070.1\|9903_11181_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_004152071.1\|11243_13247_-\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
WP_085955172.1\|14280_15488_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178091.1\|16916_17348_-	silver-binding protein SilE	NA	NA	NA	NA
WP_003032875.1\|17598_19074_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_001572351.1\|19066_19747_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_000475512.1\|19936_21322_+	hypothetical protein	NA	NA	NA	NA
WP_001246153.1\|21350_21704_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152079.1\|21817_23110_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004098958.1\|23120_26267_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	4.0e-61	22.5
WP_000758228.1\|26353_26794_+	hypothetical protein	NA	NA	NA	NA
WP_004098955.1\|26920_29368_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000843497.1\|29408_29606_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004118669.1\|29639_30377_-	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_001023257.1\|30665_31115_-	copper resistance protein	NA	NA	NA	NA
WP_004152083.1\|31348_33166_+	multicopper oxidase PcoA	NA	NA	NA	NA
33088:33104	attL	NA	NA	NA	NA
WP_001242438.1\|33165_34062_+	copper resistance protein B	NA	NA	NA	NA
WP_000025662.1\|34101_34482_+	copper resistance system chaperone PcoC	NA	NA	NA	NA
WP_004118344.1\|34486_35416_+	copper resistance protein D	NA	NA	NA	NA
WP_001188930.1\|35470_36151_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_004152084.1\|36147_37548_+	sensor histidine kinase	W8CYF6	Bacillus_phage	4.1e-18	26.3
WP_004152085.1\|37764_38199_+	hypothetical protein	NA	NA	NA	NA
WP_004152086.1\|38430_38610_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_031944101.1\|40352_40862_+	major intrinsic protein MIP	NA	NA	NA	NA
WP_004152091.1\|40911_41409_-	N-acetyltransferase	NA	NA	NA	NA
WP_004152092.1\|41740_42067_+	transcriptional regulator	NA	NA	NA	NA
WP_085903505.1\|42066_42777_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
WP_004182005.1\|42785_43331_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_004152095.1\|43406_43769_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
WP_004152096.1\|45665_46202_+	N-acetyltransferase	NA	NA	NA	NA
WP_004152097.1\|46234_46660_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
WP_004152098.1\|46672_47962_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152099.1\|48009_49761_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_004152100.1\|49778_50141_-	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
WP_004152101.1\|50190_50541_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152102.1\|50898_51168_+	hypothetical protein	NA	NA	NA	NA
WP_004152103.1\|51155_51731_+	hypothetical protein	NA	NA	NA	NA
WP_004152104.1\|51761_52256_+	DNA-binding protein	NA	NA	NA	NA
WP_004152105.1\|52299_52668_+	hypothetical protein	NA	NA	NA	NA
WP_004152106.1\|52701_52905_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004152107.1\|52953_53211_+	hypothetical protein	NA	NA	NA	NA
WP_004152108.1\|53286_53541_+	hypothetical protein	NA	NA	NA	NA
WP_003026799.1\|53716_53983_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|53970_54453_+	N-acetyltransferase	NA	NA	NA	NA
WP_020314316.1\|54664_56011_+\|integrase	integrase core domain protein	NA	NA	NA	NA
WP_004152113.1\|57853_58816_-\|protease	Zn-dependent protease	NA	NA	NA	NA
WP_009483782.1\|58802_59552_-	diguanylate cyclase	NA	NA	NA	NA
WP_004152115.1\|59789_59987_-	hypothetical protein	NA	NA	NA	NA
WP_004152116.1\|59986_62782_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152117.1\|62896_63466_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_004152118.1\|63500_63782_-	DNA-binding protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_000019473.1\|65768_66749_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
73653:73669	attR	NA	NA	NA	NA

DBSCAN-SWA_2

73218 : 112721

Escherichia_phage(33.33%)

transposase,integrase

attL 86429:86442|attR 114500:114513

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004217321.1\|73218_73923_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_044117068.1\|75226_75895_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.5
WP_000018329.1\|76084_76900_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_001067855.1\|77050_77755_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000219391.1\|77876_78782_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|78778_80017_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|80016_80601_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001336397.1\|80546_80903_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|81093_81858_-\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_024143553.1\|81886_82069_+	hypothetical protein	NA	NA	NA	NA
WP_000130000.1\|82084_82390_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|82400_83606_-	chromate transporter	NA	NA	NA	NA
WP_000376616.1\|83761_83965_-	hypothetical protein	NA	NA	NA	NA
WP_001993321.1\|83983_84163_+	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|84092_84932_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|84925_85273_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_094389648.1\|85436_86228_-	AadA family aminoglycoside 3''-O-nucleotidyltransferase	NA	NA	NA	NA
86429:86442	attL	NA	NA	NA	NA
WP_001083725.1\|86635_87133_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_000845039.1\|87277_88291_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004193519.1\|88229_88844_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000147567.1\|88969_89530_+\|transposase	transposase	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_040179220.1\|89532_92499_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
WP_000656305.1\|92565_92943_+	N-acetyltransferase	NA	NA	NA	NA
WP_000412211.1\|93143_93803_-	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_001322943.1\|93856_94048_+	hypothetical protein	NA	NA	NA	NA
WP_016197752.1\|94780_95011_+	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
WP_004118216.1\|95010_96399_+	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	6.3e-51	29.0
WP_000005560.1\|96391_97504_+	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.5e-47	33.8
WP_004118217.1\|97500_98136_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_004114613.1\|98692_99070_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.6e-57	91.3
WP_004152557.1\|99066_99414_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.0e-59	95.7
WP_094389650.1\|102656_102863_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|102861_103842_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004118832.1\|104436_106170_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
WP_004118225.1\|106177_107125_-	acetamidase	A0A1V0S8X7	Catovirus	9.6e-11	22.7
WP_004152278.1\|107169_108774_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004118227.1\|108786_109707_-	ABC transporter permease	NA	NA	NA	NA
WP_004152279.1\|109706_110555_-	ABC transporter permease	NA	NA	NA	NA
WP_004118229.1\|110551_111145_-	response regulator	NA	NA	NA	NA
WP_004118840.1\|111141_112269_-	hypothetical protein	NA	NA	NA	NA
WP_004118231.1\|112553_112721_-\|integrase	integrase	NA	NA	NA	NA
114500:114513	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022691

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP022693

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP022694

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP022692

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection