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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020815 Anoxybacillus flavithermus strain DSM 2641T chromosome, complete genome 4 crisprs cas3,c2c9_V-U4,c2c4_V-U1,RT,csa3,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,Cas14u_CAS-V,cas14j,DinG,DEDDh,WYL,c2c10_CAS-V-U3 0 4 5 0

Results visualization

1. NZ_CP020815
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020815_1 240342-240438 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020815_2 584854-585004 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020815_3 1421442-1421811 Unclear NA
5 spacers
cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020815_4 1430952-1434476 Unclear I-A
53 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP020815_4 4.8|1431447|37|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT 1431447-1431483 37 NC_019544 Deep-sea thermophilic phage D6E, complete genome 25119-25155 7 0.811
NZ_CP020815_4 4.26|1432633|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT 1432633-1432667 35 NC_023007 Bacillus phage vB_BanS-Tsamsa, complete genome 154613-154647 8 0.771
NZ_CP020815_4 4.13|1431780|37|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT 1431780-1431816 37 AB823818 Phage phi OH2 DNA, complete genome 25607-25643 9 0.757
NZ_CP020815_4 4.52|1434346|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT 1434346-1434380 35 MN693421 Marine virus AFVG_25M197, complete genome 13692-13726 9 0.743
NZ_CP020815_4 4.52|1434346|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT 1434346-1434380 35 MN693283 Marine virus AFVG_25M198, complete genome 13729-13763 9 0.743
NZ_CP020815_4 4.52|1434346|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT 1434346-1434380 35 MN693381 Marine virus AFVG_25M224, complete genome 13835-13869 9 0.743
NZ_CP020815_4 4.52|1434346|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT 1434346-1434380 35 MN693277 Marine virus AFVG_25M240, complete genome 13662-13696 9 0.743

1. spacer 4.8|1431447|37|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 7, identity: 0.811

gtaattaattccgtcatcacacttgccgctccgtaaa	CRISPR spacer
gtcagcagttccgtcatcacactcgccgctccataga	Protospacer
** * .*.***************.********.**.*

2. spacer 4.26|1432633|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT matches to NC_023007 (Bacillus phage vB_BanS-Tsamsa, complete genome) position: , mismatch: 8, identity: 0.771

ttatatcgcttcattatgaacacctttttttcttg	CRISPR spacer
ttaaaggtgttcattaggagcacctttttttcttt	Protospacer
*** *    ******* **.************** 

3. spacer 4.13|1431780|37|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT matches to AB823818 (Phage phi OH2 DNA, complete genome) position: , mismatch: 9, identity: 0.757

tttcatgtgaaaaggttggatgaagaatgaacgcaga	CRISPR spacer
tttcatgtgcaaaggttggatgaggaatgattaagat	Protospacer
********* *************.****** .. .. 

4. spacer 4.52|1434346|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT matches to MN693421 (Marine virus AFVG_25M197, complete genome) position: , mismatch: 9, identity: 0.743

ttgacacatttaaaatgagtgcagatgcagatagt	CRISPR spacer
ttgacccatttaaaattagtgcagagtttcataaa	Protospacer
***** ********** ********  .  ***. 

5. spacer 4.52|1434346|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT matches to MN693283 (Marine virus AFVG_25M198, complete genome) position: , mismatch: 9, identity: 0.743

ttgacacatttaaaatgagtgcagatgcagatagt	CRISPR spacer
ttgacccatttaaaattagtgcagagtttcataag	Protospacer
***** ********** ********  .  ***. 

6. spacer 4.52|1434346|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT matches to MN693381 (Marine virus AFVG_25M224, complete genome) position: , mismatch: 9, identity: 0.743

ttgacacatttaaaatgagtgcagatgcagatagt	CRISPR spacer
ttgacccatttaaaattagtgcagagtttcataaa	Protospacer
***** ********** ********  .  ***. 

7. spacer 4.52|1434346|35|NZ_CP020815|PILER-CR,CRISPRCasFinder,CRT matches to MN693277 (Marine virus AFVG_25M240, complete genome) position: , mismatch: 9, identity: 0.743

ttgacacatttaaaatgagtgcagatgcagatagt	CRISPR spacer
ttgacccatttaaaattagtgcagagtttcataag	Protospacer
***** ********** ********  .  ***. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 851728 : 908948 50 Streptococcus_phage(23.08%) transposase,coat,protease,holin NA
DBSCAN-SWA_2 929964 : 965812 23 Brevibacillus_phage(20.0%) transposase,integrase,tRNA attL 951555:951572|attR 965258:965275
DBSCAN-SWA_3 978570 : 1029656 52 Bacillus_phage(16.67%) transposase,coat NA
DBSCAN-SWA_4 1622545 : 1628272 7 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_5 2598198 : 2681425 76 Bacillus_phage(28.57%) transposase,coat,holin,integrase attL 2632082:2632141|attR 2679135:2680386
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage