CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP018919	Serratia marcescens strain UMH7 chromosome, complete genome	0 crisprs	DEDDh,DinG,csa3,cas3,WYL	5
NZ_CP018921	Serratia marcescens strain UMH7 plasmid unnamed4, complete sequence	0 crisprs	NA	0
NZ_CP018922	Serratia marcescens strain UMH7 plasmid unnamed5, complete sequence	0 crisprs	NA	0
NZ_CP018920	Serratia marcescens strain UMH7 plasmid unnamed3, complete sequence	0 crisprs	NA	9

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

159345 : 217217

Salmonella_phage(20.0%)

tRNA,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089196592.1\|159345_160392_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_089191195.1\|160369_161134_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.7e-54	46.3
WP_033641890.1\|161127_161754_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.3e-34	49.4
WP_089196593.1\|162061_163078_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	3.1e-07	37.5
WP_019455119.1\|163132_164131_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.2e-32	37.6
WP_089197664.1\|164210_166766_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.8e-27	20.0
WP_089191196.1\|167324_167942_-	cell filamentation protein Fic	NA	NA	NA	NA
WP_042785641.1\|168136_169021_-	hypothetical protein	NA	NA	NA	NA
WP_033641894.1\|169159_170131_-	aldo/keto reductase	NA	NA	NA	NA
WP_089197665.1\|170143_170902_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.6e-16	30.2
WP_033641897.1\|171050_171944_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004932561.1\|172361_172679_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_089196594.1\|172691_174053_+	PTS N,N'-diacetylchitobiose transporter subunit IIC	NA	NA	NA	NA
WP_089196595.1\|174096_175482_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_004932550.1\|175497_176346_+	transcriptional regulator ChbR	NA	NA	NA	NA
WP_089196596.1\|176494_177256_+	chitin disaccharide deacetylase	NA	NA	NA	NA
WP_033641904.1\|177265_178645_-	MFS transporter	NA	NA	NA	NA
WP_033641905.1\|178888_179377_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.0e-24	46.1
WP_004932541.1\|179488_180553_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.7e-112	61.9
WP_033641906.1\|180613_181129_+	recombination regulator RecX	NA	NA	NA	NA
WP_033641907.1\|181262_183890_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-80	37.7
WP_004091602.1\|184142_184328_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_033641908.1\|185683_186250_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_004932520.1\|186246_186675_+	DedA family protein	NA	NA	NA	NA
WP_033641909.1\|186757_188320_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_033641910.1\|188486_189002_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_016929024.1\|189067_190357_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_004932506.1\|190399_191191_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_004932504.1\|191360_192722_+	signal recognition particle protein	NA	NA	NA	NA
WP_004932501.1\|192936_193185_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_019455135.1\|193203_193752_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_033641911.1\|193804_194572_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_015376707.1\|194620_194977_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_033641912.1\|195120_195348_-	transcriptional regulator	Q37973	Salmonella_virus	4.6e-20	65.7
WP_033641913.1\|195437_196532_-	phage late control D family protein	Q6K1G4	Salmonella_virus	8.6e-104	50.0
WP_033641914.1\|196528_197002_-\|tail	phage tail protein	Q6K1G5	Salmonella_virus	8.1e-43	57.2
WP_089196597.1\|197024_199118_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	2.4e-14	45.5
WP_033641916.1\|199110_199233_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	2.8e-08	74.3
WP_033641917.1\|199265_199553_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	3.0e-24	58.9
WP_033641919.1\|199617_200127_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.6e-65	69.0
WP_089196598.1\|200139_201309_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	1.3e-182	79.7
WP_089196599.1\|201449_201875_-	hypothetical protein	NA	NA	NA	NA
WP_069101124.1\|203853_207147_-\|tail	phage tail protein I	G5DEL7	Salmonella_phage	1.5e-273	48.8
WP_047025229.1\|207139_208048_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.5e-122	76.5
WP_033641924.1\|208052_208403_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	4.4e-38	67.2
WP_069101126.1\|208399_209035_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.2e-57	54.5
WP_033641926.1\|209120_209585_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.7e-37	52.6
WP_089196600.1\|209638_210151_-	lysozyme	A0A218M4K3	Erwinia_phage	1.5e-58	64.1
WP_033641928.1\|210134_210353_-	hypothetical protein	B6SD15	Bacteriophage	8.1e-06	50.9
WP_033641929.1\|210356_210560_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	1.8e-20	68.7
WP_089196601.1\|210751_210946_-	hypothetical protein	NA	NA	NA	NA
WP_089194299.1\|211009_213106_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	2.9e-193	48.2
WP_033641931.1\|213089_213311_-	hypothetical protein	A0A0M4S5Q7	Salmonella_phage	6.9e-13	56.5
WP_089196602.1\|213389_213695_-	hypothetical protein	NA	NA	NA	NA
WP_089196603.1\|213937_214834_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	7.5e-82	53.1
WP_033641933.1\|214880_215645_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_016929016.1\|216140_217217_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	9.0e-90	50.9

DBSCAN-SWA_2

504851 : 550074

Salmonella_phage(27.91%)

integrase,tail,head,terminase,tRNA

attL 508234:508293|attR 550532:550596

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033642140.1\|504851_506237_+\|tRNA	cysteine--tRNA ligase	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	4.5e-41	35.0
WP_033642141.1\|506295_506508_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004940177.1\|506518_507385_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	9.0e-32	34.7
WP_080273369.1\|507617_507800_+	hypothetical protein	NA	NA	NA	NA
508234:508293	attL	NA	NA	NA	NA
WP_046688392.1\|508299_509460_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.3e-155	69.7
WP_089196668.1\|509883_510531_-	DNA methyltransferase	G8C7S6	Escherichia_phage	2.4e-90	76.4
WP_145957712.1\|510527_510716_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_060428581.1\|510730_511111_-	hypothetical protein	NA	NA	NA	NA
WP_089196669.1\|511336_511555_-	hypothetical protein	NA	NA	NA	NA
WP_089196670.1\|511532_512000_-	hypothetical protein	A0A2I6PID2	Escherichia_phage	2.9e-08	38.9
WP_089196671.1\|511996_512233_-	hypothetical protein	NA	NA	NA	NA
WP_089196672.1\|512234_512912_-	ead/Ea22-like family protein	Q5G8U8	Enterobacteria_phage	9.9e-10	46.8
WP_089196673.1\|512904_513297_-	hypothetical protein	NA	NA	NA	NA
WP_089196674.1\|513296_513632_-	hypothetical protein	NA	NA	NA	NA
WP_089196676.1\|513831_514062_-	hypothetical protein	NA	NA	NA	NA
WP_145957713.1\|514061_514682_-	hypothetical protein	NA	NA	NA	NA
WP_089196678.1\|514678_515179_-	hypothetical protein	NA	NA	NA	NA
WP_089196679.1\|515162_516002_-	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	1.8e-77	59.3
WP_089196680.1\|516004_516208_-	hypothetical protein	NA	NA	NA	NA
WP_089196681.1\|516257_516947_-	hypothetical protein	A0A088C400	Shewanella_sp._phage	1.5e-24	39.7
WP_085819282.1\|516946_517612_-	ATP-binding protein	G9L667	Escherichia_phage	1.7e-70	61.3
WP_089196682.1\|517611_518283_-	exodeoxyribonuclease X	A0A1W5PTR6	Pseudoalteromonas_phage	6.8e-19	31.9
WP_154232794.1\|518442_518586_-	hypothetical protein	NA	NA	NA	NA
WP_089197671.1\|519793_520387_-	LexA family transcriptional regulator	Q76H56	Enterobacteria_phage	4.0e-15	61.1
WP_041033757.1\|520497_520710_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-23	75.4
WP_060706485.1\|520735_521026_+	hypothetical protein	K7PHN8	Enterobacterial_phage	2.8e-06	39.4
WP_158524113.1\|521120_521312_+	hypothetical protein	NA	NA	NA	NA
WP_154232795.1\|521318_521477_+	hypothetical protein	NA	NA	NA	NA
WP_089196683.1\|521469_522528_+	replication protein	A0A2H4J2W5	uncultured_Caudovirales_phage	3.8e-56	81.6
WP_089197672.1\|522527_523919_+	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	1.0e-154	62.7
WP_085819278.1\|523918_524341_+	hypothetical protein	A0A2H4FNF5	Salmonella_phage	3.1e-46	60.9
WP_041033765.1\|524337_524694_+	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	6.1e-43	70.3
WP_060431944.1\|524690_525503_+	antitermination protein	M9NZB0	Enterobacteria_phage	3.6e-83	58.2
WP_145957714.1\|525737_525959_+	hypothetical protein	NA	NA	NA	NA
WP_041033771.1\|526018_526279_+	hypothetical protein	NA	NA	NA	NA
WP_089196685.1\|526278_526806_+	lysozyme	H9C184	Pectobacterium_phage	4.4e-82	83.6
WP_089196686.1\|526906_527431_+	hypothetical protein	K7PHH7	Enterobacteria_phage	1.9e-32	47.6
WP_145957715.1\|527414_527738_+	hypothetical protein	NA	NA	NA	NA
WP_089196688.1\|527756_528359_+\|terminase	terminase small subunit	A0A2P9HY59	Yersinia_phage	1.6e-35	45.1
WP_089196689.1\|528345_529617_+\|terminase	terminase	Q5G8Y7	Enterobacteria_phage	2.7e-178	71.5
WP_089196690.1\|529831_531301_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-147	53.0
WP_089196691.1\|531356_531905_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	1.2e-45	53.5
WP_089196692.1\|531954_533226_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.0e-76	43.2
WP_060447100.1\|533236_533740_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	4.9e-30	48.5
WP_089196693.1\|533750_534698_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-103	58.2
WP_089196694.1\|534739_535132_+	hypothetical protein	NA	NA	NA	NA
WP_089196695.1\|535100_535511_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.6e-31	54.7
WP_089196696.1\|535507_536014_+	hypothetical protein	NA	NA	NA	NA
WP_089196697.1\|536013_536400_+\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	2.9e-46	74.4
WP_089186892.1\|536503_536935_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-42	56.9
WP_089196698.1\|536938_538420_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	9.7e-143	53.5
WP_089196699.1\|538429_538870_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	1.0e-52	69.2
WP_089196700.1\|538880_539324_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	8.2e-21	40.4
WP_089196701.1\|539501_541490_+	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	2.5e-162	46.5
WP_089196702.1\|541489_542086_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.6e-48	53.5
WP_057523739.1\|542072_542378_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	7.3e-21	50.0
WP_089196703.1\|542410_543355_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	2.1e-74	41.6
WP_158524123.1\|543443_544112_+	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	4.5e-79	68.3
WP_057523820.1\|544108_544462_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	4.5e-38	65.0
WP_089196705.1\|544461_545652_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	9.3e-120	58.5
WP_089196706.1\|545648_546320_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	2.9e-54	51.4
WP_089196707.1\|546312_546882_+	hypothetical protein	A0A0M3ULD8	Salmonella_phage	2.3e-15	49.4
WP_089196708.1\|546930_547989_+	acyltransferase	NA	NA	NA	NA
WP_089196709.1\|548094_550074_+	SGNH/GDSL hydrolase family protein	W0TW81	Staphylococcus_phage	1.7e-38	42.0
550532:550596	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1263494 : 1302287

Enterobacterial_phage(28.21%)

lysis,terminase,integrase,tail,protease,portal

attL 1263320:1263379|attR 1306760:1306887

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1263320:1263379	attL	NA	NA	NA	NA
WP_033637961.1\|1263494_1264505_-\|integrase	tyrosine-type recombinase/integrase	K7PLZ2	Enterobacterial_phage	1.6e-128	67.0
WP_089196873.1\|1264504_1264738_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_089197683.1\|1265045_1265891_-	hypothetical protein	M4MB35	Vibrio_phage	9.7e-47	39.8
WP_089196874.1\|1265895_1266291_-	hypothetical protein	A0A2R3UAL4	Myoviridae_environmental_samples	3.3e-29	55.0
WP_089196875.1\|1266277_1266499_-	hypothetical protein	J7I0T4	Pseudomonas_phage	6.7e-08	55.2
WP_089196876.1\|1266495_1267173_-	hypothetical protein	NA	NA	NA	NA
WP_089196877.1\|1267169_1267955_-	ParB N-terminal domain-containing protein	C7BGF1	Burkholderia_phage	1.4e-60	50.6
WP_089196878.1\|1269036_1269687_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.5e-84	70.4
WP_089196879.1\|1269791_1269989_+	hypothetical protein	H9C161	Pectobacterium_phage	1.4e-17	66.7
WP_089196880.1\|1270016_1270550_+	DNA-binding protein	Q8SBF4	Shigella_phage	4.3e-16	33.3
WP_089197684.1\|1270748_1271666_+	GntR family transcriptional regulator	K7PLZ7	Enterobacterial_phage	2.7e-34	59.0
WP_158524117.1\|1271646_1272384_+	ATP-binding protein	A0A1W6JP39	Morganella_phage	1.2e-53	44.5
WP_089196882.1\|1272380_1272728_+	hypothetical protein	NA	NA	NA	NA
WP_089196883.1\|1272751_1272952_+	hypothetical protein	NA	NA	NA	NA
WP_089196884.1\|1272948_1274076_+	site-specific DNA-methyltransferase	A0A060D598	Salmonella_phage	4.2e-98	52.7
WP_089196885.1\|1274072_1274456_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	8.3e-38	58.5
WP_089196886.1\|1274440_1275436_+	DUF968 domain-containing protein	A0A0P0ZD76	Stx2-converting_phage	2.4e-84	46.4
WP_089196887.1\|1275486_1276155_+	hypothetical protein	Q8HA89	Salmonella_phage	1.9e-45	44.4
WP_089196888.1\|1276407_1277205_-	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	2.2e-64	45.5
WP_089196889.1\|1277500_1278523_+	site-specific DNA-methyltransferase	Q8W637	Enterobacteria_phage	1.8e-119	62.1
WP_033646506.1\|1278679_1278925_+\|lysis	lysis protein	A0A127KNH9	Pseudomonas_phage	1.2e-05	36.2
WP_089197685.1\|1278933_1279410_+	lysozyme	A0A1R3Y5W5	Salmonella_virus	3.1e-50	61.6
WP_089196890.1\|1279409_1279781_+	DUF2570 family protein	NA	NA	NA	NA
WP_089196892.1\|1280002_1280275_+	hypothetical protein	NA	NA	NA	NA
WP_089196893.1\|1280348_1280603_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	7.0e-25	66.7
WP_089196894.1\|1280880_1281390_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.1e-40	53.2
WP_089196895.1\|1281379_1283491_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	9.8e-306	71.4
WP_089196896.1\|1283487_1283703_+	hypothetical protein	K7PMB5	Enterobacterial_phage	1.7e-19	70.0
WP_089196897.1\|1283699_1285211_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	3.1e-205	70.7
WP_089196898.1\|1285152_1287183_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	1.4e-288	75.6
WP_089196899.1\|1287267_1287591_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	3.6e-26	59.8
WP_089196900.1\|1287583_1287859_+	ATP-binding protein	K7PH55	Enterobacterial_phage	4.9e-16	51.2
WP_089197686.1\|1287869_1288433_+\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.3e-50	57.8
WP_089196901.1\|1288429_1288831_+\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	4.3e-45	60.2
WP_089196902.1\|1288842_1289580_+\|tail	phage tail protein	K7P6G8	Enterobacteria_phage	1.5e-88	66.9
WP_046898641.1\|1289624_1290035_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	6.8e-22	41.0
WP_046898587.1\|1290055_1290355_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.3e-24	57.6
WP_089196903.1\|1290347_1293473_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	2.0e-113	30.9
WP_060431780.1\|1293472_1293826_+\|tail	phage tail protein	A0A1W6JP11	Morganella_phage	2.5e-20	42.1
WP_089196904.1\|1293834_1294584_+\|tail	phage minor tail protein L	K7P6G9	Enterobacteria_phage	2.5e-86	59.6
WP_089196905.1\|1294586_1295288_+	C40 family peptidase	A0A1W6JP31	Morganella_phage	2.1e-79	58.0
WP_089196906.1\|1295331_1295670_+	hypothetical protein	Q6UAW3	Klebsiella_phage	4.9e-18	40.2
WP_060431788.1\|1295708_1296323_+\|tail	tail assembly protein	G8C7R3	Escherichia_phage	2.2e-64	64.6
WP_089196907.1\|1296382_1299766_+	DUF1983 domain-containing protein	F1C571	Cronobacter_phage	0.0e+00	52.8
WP_089197687.1\|1299860_1302287_+	hypothetical protein	B5TAB2	Burkholderia_phage	5.7e-108	38.4
1306760:1306887	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1542115 : 1569145

Moraxella_phage(50.0%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089196970.1\|1542115_1543525_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_033642834.1\|1543671_1543881_-	hypothetical protein	NA	NA	NA	NA
WP_033638276.1\|1544660_1545053_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_033642835.1\|1545057_1545657_+	hypothetical protein	NA	NA	NA	NA
WP_033642836.1\|1545712_1545952_-	YebV family protein	NA	NA	NA	NA
WP_047576121.1\|1546086_1547019_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_089197690.1\|1547038_1549381_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_046686936.1\|1549532_1550300_-	molecular chaperone	NA	NA	NA	NA
WP_033642838.1\|1550320_1550863_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_033642839.1\|1550856_1551360_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_033642840.1\|1551362_1551899_-	fimbrial major subunit CsuA/B family protein	NA	NA	NA	NA
WP_033652487.1\|1552172_1552709_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_089196971.1\|1552974_1554411_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_033644262.1\|1554512_1557143_-	PqiB family protein	NA	NA	NA	NA
WP_047026336.1\|1557111_1558359_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_046686940.1\|1558614_1559112_+	GAF domain-containing protein	NA	NA	NA	NA
WP_004931497.1\|1559208_1559919_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_033642845.1\|1559938_1561987_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.5e-85	33.9
WP_033652485.1\|1562054_1562900_-	DMT family transporter	NA	NA	NA	NA
WP_033652484.1\|1562896_1564204_-	opine metallophore biosynthesis dehydrogenase	NA	NA	NA	NA
WP_033642848.1\|1564196_1564994_-	nicotianamine synthase	NA	NA	NA	NA
WP_004931489.1\|1564981_1565767_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.2e-10	28.4
WP_052133798.1\|1565763_1566804_-	iron ABC transporter permease	NA	NA	NA	NA
WP_089196972.1\|1566806_1567898_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033652481.1\|1568266_1569145_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_5

3842425 : 3880014

Erwinia_phage(42.11%)

lysis,integrase,capsid,tail,head,terminase,tRNA,plate,portal

attL 3849055:3849110|attR 3880089:3880144

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004937199.1\|3842425_3843439_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.7e-110	59.5
WP_001144069.1\|3843764_3843980_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_025304325.1\|3844116_3845865_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.6e-74	38.8
WP_025304326.1\|3846022_3847864_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_033644589.1\|3847919_3848372_-	polyketide cyclase	NA	NA	NA	NA
WP_033644588.1\|3848388_3848877_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
3849055:3849110	attL	NA	NA	NA	NA
WP_071824297.1\|3849503_3849734_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.9e-21	64.5
WP_089197454.1\|3849830_3850979_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	2.4e-125	63.4
WP_089197455.1\|3850975_3851461_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.4e-50	61.1
WP_089197456.1\|3851465_3854240_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	4.5e-101	40.3
WP_023456045.1\|3854232_3854355_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	1.5e-09	72.5
WP_089197457.1\|3854387_3854669_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.4e-26	70.1
WP_023447563.1\|3854723_3855233_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.7e-70	76.2
WP_089197458.1\|3855248_3856418_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	3.4e-183	81.4
WP_089197459.1\|3856694_3857114_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	4.4e-16	38.7
WP_060437251.1\|3860053_3860587_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	4.8e-76	76.0
WP_089197461.1\|3860579_3861488_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	2.8e-108	67.9
WP_033639346.1\|3861492_3861843_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	6.4e-37	66.4
WP_145957740.1\|3861839_3862106_-	hypothetical protein	NA	NA	NA	NA
WP_089197462.1\|3862121_3862751_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	4.3e-76	73.3
WP_060418385.1\|3862823_3863270_-	phage virion morphogenesis protein	O80313	Escherichia_phage	3.5e-40	58.4
WP_089197463.1\|3863256_3863733_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	3.4e-49	64.1
WP_089197464.1\|3863828_3864257_-\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	1.2e-13	36.6
WP_089197465.1\|3864253_3864766_-	lysozyme	A0A218M4K3	Erwinia_phage	1.9e-58	66.5
WP_031231709.1\|3864749_3864959_-	hypothetical protein	A0A218M4L5	Erwinia_phage	2.0e-09	43.5
WP_015379118.1\|3864963_3865167_-	phage Tail protein X	A0A0F7LCN2	Escherichia_phage	2.4e-20	68.7
WP_089197466.1\|3865166_3865658_-\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	2.5e-39	53.3
WP_089197467.1\|3865751_3866411_-\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	4.0e-80	69.4
WP_089197468.1\|3866413_3867625_-\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	2.3e-158	78.5
WP_089197469.1\|3867667_3868483_-\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	4.6e-70	52.8
WP_089197470.1\|3868625_3870398_+\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	8.8e-292	82.2
WP_089197471.1\|3870397_3871432_+\|portal	phage portal protein	F1BUR7	Erwinia_phage	2.6e-158	77.2
WP_089197472.1\|3871496_3871832_-	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	3.6e-37	70.5
WP_089197473.1\|3871974_3872295_-	hypothetical protein	A0A222YWE2	Escherichia_phage	3.7e-31	65.7
WP_126186641.1\|3872721_3872919_-	hypothetical protein	NA	NA	NA	NA
WP_060445968.1\|3872966_3873191_-	hypothetical protein	NA	NA	NA	NA
WP_089197474.1\|3873229_3875446_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	4.7e-242	58.5
WP_089197475.1\|3875442_3875769_-	hypothetical protein	NA	NA	NA	NA
WP_089197476.1\|3875765_3876083_-	hypothetical protein	NA	NA	NA	NA
WP_089197477.1\|3876072_3876354_-	DUF5405 family protein	A0A218M4I8	Erwinia_phage	4.5e-17	51.2
WP_060426813.1\|3876476_3876701_-	hypothetical protein	Q6K1F5	Salmonella_virus	3.7e-14	56.9
WP_023447523.1\|3876700_3876943_-	DUF2732 family protein	E5G6L6	Salmonella_phage	7.4e-08	50.0
WP_043148063.1\|3877006_3877309_-	hypothetical protein	NA	NA	NA	NA
WP_072010285.1\|3877320_3877500_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	1.1e-05	51.0
WP_089197478.1\|3877510_3878020_-	hypothetical protein	A0A1S6L008	Salmonella_phage	3.2e-45	53.6
WP_089197479.1\|3878050_3878269_-	regulator	NA	NA	NA	NA
WP_089197480.1\|3878378_3878963_+	phage repressor protein CI	F1BUN8	Cronobacter_phage	6.3e-29	31.7
WP_089197722.1\|3879075_3880014_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	2.1e-111	61.4
3880089:3880144	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018920

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 17069

Stx2-converting_phage(75.0%)

integrase,transposase

attL 10699:10712|attR 18535:18548

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089197735.1\|1794_2526_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_158524124.1\|2628_2985_+	MFS transporter	NA	NA	NA	NA
WP_089197737.1\|2861_3647_+	MFS transporter	NA	NA	NA	NA
WP_089197738.1\|3580_4000_+	hypothetical protein	NA	NA	NA	NA
WP_089197739.1\|4189_4417_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
WP_089197740.1\|5108_5540_+	PACE efflux transporter	NA	NA	NA	NA
WP_089197741.1\|5772_6090_-\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	9.0e-30	59.8
WP_089197742.1\|6102_6591_-\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	3.1e-45	59.0
WP_089197743.1\|7068_7434_-\|transposase	transposase	B6DZU5	Stx2-converting_phage	1.6e-54	89.7
WP_089197744.1\|7600_8257_+\|transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	3.6e-17	40.5
WP_089197745.1\|8253_8601_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.6e-43	72.0
WP_089197746.1\|8620_10192_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.3e-173	60.6
10699:10712	attL	NA	NA	NA	NA
WP_089197747.1\|10723_11059_-	hypothetical protein	A0A2I6UFG0	Klebsiella_phage	3.6e-05	33.9
WP_089197748.1\|11650_13225_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
WP_089197818.1\|13353_13704_-	AAA family ATPase	NA	NA	NA	NA
WP_089197749.1\|13902_14928_-	AAA family ATPase	NA	NA	NA	NA
WP_089197750.1\|14860_16525_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_089197819.1\|16508_17069_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	6.9e-33	43.2
18535:18548	attR	NA	NA	NA	NA

DBSCAN-SWA_2

21908 : 22439

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089197754.1\|21908_22439_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.7e-17	32.0

DBSCAN-SWA_3

41463 : 51300

Idiomarinaceae_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089197771.1\|41463_44778_-	hypothetical protein	A0A088F8A2	Idiomarinaceae_phage	5.0e-22	29.5
WP_089197772.1\|44833_45121_-	conjugal transfer protein	NA	NA	NA	NA
WP_089197773.1\|45113_46289_-	plasmid transfer ATPase TraJ	NA	NA	NA	NA
WP_089186986.1\|46281_47097_-	type IV secretion system DotC family protein	NA	NA	NA	NA
WP_089197774.1\|47062_47557_-	DotD/TraH family lipoprotein	NA	NA	NA	NA
WP_089197775.1\|47642_48719_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	2.0e-33	33.1
WP_089186988.1\|50146_50815_-	prepilin peptidase	NA	NA	NA	NA
WP_089186989.1\|50814_51300_-	lytic transglycosylase domain-containing protein	A0A0K2QQJ4	Ralstonia_phage	5.6e-07	33.3

DBSCAN-SWA_4

64214 : 67038

Yersinia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089197783.1\|64214_65042_-	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	2.8e-46	38.7
WP_089197784.1\|65100_65472_-	hypothetical protein	NA	NA	NA	NA
WP_089197785.1\|66240_67038_-	N-6 DNA methylase	H7BVT3	unidentified_phage	2.9e-16	37.8

DBSCAN-SWA_5

73344 : 76425

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089186937.1\|73344_73770_-	antirestriction protein	A9J566	Pseudomonas_phage	3.2e-14	32.8
WP_060432392.1\|74162_74384_-	hypothetical protein	NA	NA	NA	NA
WP_089197794.1\|74400_75045_-	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	1.4e-29	38.3
WP_089197795.1\|75414_76425_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.1e-16	25.8

DBSCAN-SWA_6

80125 : 83015

Vibrio_phage(33.33%)

integrase

attL 70290:70303|attR 81913:81926

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
70290:70303	attL	NA	NA	NA	NA
WP_060432385.1\|80125_80749_-	AAA family ATPase	K7R2R7	Vibrio_phage	6.3e-43	46.9
WP_089197798.1\|80920_81664_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	3.4e-19	51.0
WP_089197821.1\|82499_83015_+	hypothetical protein	A0A2I6PCS6	Staphylococcus_phage	1.0e-06	35.6
81913:81926	attR	NA	NA	NA	NA

DBSCAN-SWA_7

87019 : 94106

Tupanvirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089197802.1\|87019_89269_-	catalase HPII	A0A2K9L572	Tupanvirus	1.7e-143	49.2
WP_060432379.1\|91706_91952_+	transcriptional regulator	A0A248SLB9	Klebsiella_phage	2.2e-12	58.6
WP_089197804.1\|93158_94106_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.6e-72	55.0

DBSCAN-SWA_8

99675 : 100840

Shigella_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145957749.1\|99675_100840_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.7e-71	46.0

DBSCAN-SWA_9

105638 : 109547

Tupanvirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089197812.1\|105638_106664_-	zinc-binding dehydrogenase	A0A2K9L7I1	Tupanvirus	6.3e-16	26.6
WP_089197813.1\|106660_107227_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_089197814.1\|107227_107434_-	hypothetical protein	NA	NA	NA	NA
WP_089197815.1\|108786_109137_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.9e-37	62.9
WP_089197816.1\|109133_109547_-\|transposase	transposase	Q6H9S5	Enterobacteria_phage	4.2e-27	75.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018919

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018920

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection