CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018918	Serratia marcescens strain UMH5 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP018917	Serratia marcescens strain UMH5 chromosome, complete genome	0 crisprs	RT,WYL,DinG,csa3,DEDDh,cas3	0	0	8	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

155881 : 212260

Erwinia_phage(22.58%)

tail,tRNA,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089185481.1\|155881_156928_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_089185482.1\|156905_157670_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.1e-52	45.5
WP_047728898.1\|157663_158290_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.3e-34	49.4
WP_071605305.1\|158597_159614_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	8.2e-08	38.6
WP_004932578.1\|159668_160667_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.2e-32	37.6
WP_089186835.1\|160746_163302_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	6.8e-27	19.7
WP_089186836.1\|163611_164496_-	hypothetical protein	NA	NA	NA	NA
WP_060425313.1\|164633_165605_-	aldo/keto reductase	NA	NA	NA	NA
WP_033638672.1\|165617_166376_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	9.4e-17	29.5
WP_089185483.1\|166524_167418_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004932561.1\|167836_168154_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_049200339.1\|168166_169528_+	PTS N,N'-diacetylchitobiose transporter subunit IIC	NA	NA	NA	NA
WP_089185484.1\|169571_170957_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_060425318.1\|170972_171821_+	transcriptional regulator ChbR	NA	NA	NA	NA
WP_084826821.1\|171969_172731_+	chitin disaccharide deacetylase	NA	NA	NA	NA
WP_089185485.1\|172740_174120_-	MFS transporter	NA	NA	NA	NA
WP_060425320.1\|174363_174852_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	6.0e-25	47.4
WP_060425321.1\|174963_176028_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.7e-112	61.9
WP_084826819.1\|176088_176601_+	recombination regulator RecX	NA	NA	NA	NA
WP_060425322.1\|176734_179362_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-80	37.7
WP_004091602.1\|179614_179800_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_089185486.1\|180726_181293_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_004932520.1\|181289_181718_+	DedA family protein	NA	NA	NA	NA
WP_084826817.1\|181800_183363_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_019455133.1\|183529_184045_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_038871814.1\|184111_185401_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_004932506.1\|185443_186235_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_004932504.1\|186404_187766_+	signal recognition particle protein	NA	NA	NA	NA
WP_004932501.1\|187980_188229_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_019455135.1\|188247_188796_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_004932485.1\|188848_189616_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_015376707.1\|189664_190021_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_016929021.1\|190163_190391_-	transcriptional regulator	Q37973	Salmonella_virus	3.5e-20	65.7
WP_089185487.1\|190480_191632_-	hypothetical protein	Q6K1G4	Salmonella_virus	1.3e-105	51.8
WP_084826814.1\|191628_192090_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	5.8e-46	59.3
WP_089185488.1\|192102_194157_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	2.1e-31	31.5
WP_084826812.1\|194149_194272_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	2.8e-08	74.3
WP_084826811.1\|194304_194592_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	3.0e-24	62.5
WP_084826810.1\|194657_195167_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.6e-65	69.0
WP_084826809.1\|195179_196349_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	3.2e-181	79.7
WP_084826808.1\|196489_197047_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	2.3e-28	38.0
WP_089185489.1\|198893_202187_-\|tail	phage tail protein I	A0A2L0V120	Salmonella_phage	2.4e-274	48.4
WP_089185490.1\|202179_203088_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.9e-120	75.8
WP_089185491.1\|203092_203443_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	3.4e-38	68.1
WP_084826805.1\|203439_204075_-\|plate	phage baseplate assembly protein V	A0A2I8TV69	Erwinia_phage	2.7e-57	56.4
WP_089185492.1\|204160_204625_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	2.2e-37	53.3
WP_089185493.1\|204677_205190_-	lysozyme	A0A218M4K3	Erwinia_phage	9.0e-56	63.1
WP_074055887.1\|205173_205392_-	hypothetical protein	B6SD15	Bacteriophage	1.4e-05	50.9
WP_084827882.1\|205395_205599_-\|tail	phage tail protein	F1BUQ5	Erwinia_phage	1.2e-19	68.7
WP_084826803.1\|205802_205985_-	hypothetical protein	NA	NA	NA	NA
WP_089186837.1\|206047_208123_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	6.2e-196	48.5
WP_089185494.1\|208127_208349_-	hypothetical protein	A0A0M4S5Q7	Salmonella_phage	1.2e-12	52.2
WP_084826801.1\|208428_208734_-	hypothetical protein	NA	NA	NA	NA
WP_089185495.1\|208956_209865_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	2.9e-81	52.4
WP_047728881.1\|209913_210678_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_038871801.1\|211183_212260_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.2e-89	50.9

DBSCAN-SWA_2

275178 : 283952

Enterobacteria_phage(66.67%)

integrase

attL 267512:267527|attR 282324:282339

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
267512:267527	attL	NA	NA	NA	NA
WP_015376738.1\|275178_276282_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.6e-60	43.4
WP_089185509.1\|276285_277545_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.8e-98	48.6
WP_089185510.1\|277970_279152_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	8.9e-139	60.9
WP_089185511.1\|279949_280213_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	8.5e-18	56.2
WP_016929809.1\|280209_280455_+	hypothetical protein	NA	NA	NA	NA
WP_089185512.1\|280460_281003_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	2.9e-20	54.5
WP_016928972.1\|280999_281263_+	hypothetical protein	NA	NA	NA	NA
WP_089185513.1\|281259_281595_+	DUF5375 family protein	NA	NA	NA	NA
WP_089185514.1\|281606_283952_+	DNA primase	Q7M2A8	Enterobacteria_phage	4.5e-259	59.5
282324:282339	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1387601 : 1434870

Salmonella_phage(35.56%)

head,terminase,integrase,tail,plate

attL 1400692:1400709|attR 1440436:1440453

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_089185807.1\|1387601_1388684_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.4e-98	51.0
WP_015377485.1\|1388658_1388934_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	4.0e-10	40.2
WP_089185808.1\|1389006_1390074_-	recombinase RecT	A0A2R9YJJ1	Escherichia_phage	6.7e-77	59.8
WP_089185809.1\|1390088_1392728_-	hypothetical protein	H6WRX1	Salmonella_phage	8.3e-129	39.4
WP_145958025.1\|1392898_1393120_-	hypothetical protein	NA	NA	NA	NA
WP_089185810.1\|1393249_1393558_-	hypothetical protein	NA	NA	NA	NA
WP_158524195.1\|1393639_1395091_-	ATP-binding protein	X5I2M2	Pseudomonas_phage	3.4e-193	69.5
WP_060437647.1\|1395200_1395395_-	hypothetical protein	NA	NA	NA	NA
WP_089185812.1\|1395947_1396337_-	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.4e-29	51.9
WP_072271595.1\|1396461_1396707_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.1e-19	57.7
WP_060437645.1\|1396718_1397180_+	hypothetical protein	H9C162	Pectobacterium_phage	1.7e-16	42.6
WP_060443316.1\|1397194_1397431_+	hypothetical protein	NA	NA	NA	NA
WP_089185813.1\|1398302_1398983_+	replication protein	A0A0U2JGJ0	Escherichia_phage	6.4e-41	50.7
WP_089185814.1\|1398997_1399378_+	hypothetical protein	NA	NA	NA	NA
WP_089185815.1\|1399570_1400326_+	hypothetical protein	A0A1R3Y5Q7	Salmonella_virus	6.9e-121	76.9
WP_158524196.1\|1400325_1400463_+	hypothetical protein	NA	NA	NA	NA
WP_158524197.1\|1400588_1400765_+	hypothetical protein	NA	NA	NA	NA
1400692:1400709	attL	NA	NA	NA	NA
WP_089185817.1\|1400824_1401421_+	DUF1367 family protein	H9C173	Pectobacterium_phage	2.7e-59	56.6
WP_060447344.1\|1401417_1401702_+	DUF1364 domain-containing protein	A0A088CE53	Shigella_phage	3.2e-34	71.3
WP_089185818.1\|1401698_1402259_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	4.4e-48	51.7
WP_145958026.1\|1402411_1403209_-	hypothetical protein	NA	NA	NA	NA
WP_089185820.1\|1403438_1403666_+	hypothetical protein	A0A218M4L5	Erwinia_phage	2.2e-06	46.0
WP_089185821.1\|1403670_1404165_+	lysozyme	A0A2H4FND7	Salmonella_phage	1.8e-61	72.4
WP_089185822.1\|1404161_1404548_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_089185823.1\|1404930_1405446_+	hypothetical protein	A0A192Y5Y1	Salmonella_phage	1.0e-19	34.1
WP_060437631.1\|1405586_1406318_+	hypothetical protein	NA	NA	NA	NA
WP_089185824.1\|1406389_1407565_+\|terminase	PBSX family phage terminase large subunit	A0A2H4J196	uncultured_Caudovirales_phage	4.8e-153	65.9
WP_089185825.1\|1407561_1409025_+	DUF1073 domain-containing protein	A0A2H4IYV2	uncultured_Caudovirales_phage	2.2e-187	65.1
WP_089185826.1\|1408981_1409635_+\|head	phage head morphogenesis protein	A0A2H4J8F5	uncultured_Caudovirales_phage	4.2e-66	58.6
WP_079451393.1\|1409638_1410862_+	DUF2213 domain-containing protein	A0A2H4J159	uncultured_Caudovirales_phage	3.9e-113	58.0
WP_089185827.1\|1410873_1411365_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	2.0e-52	65.2
WP_060424640.1\|1411379_1412324_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	6.6e-153	83.3
WP_089185828.1\|1412358_1412751_+	hypothetical protein	NA	NA	NA	NA
WP_060424636.1\|1412737_1413142_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	2.2e-44	67.4
WP_089185829.1\|1413138_1413702_+	hypothetical protein	A0A0M4S631	Salmonella_phage	2.5e-46	54.3
WP_089185830.1\|1413688_1414078_+\|head,tail	head-tail adaptor	A0A0M3ULK0	Salmonella_phage	1.2e-52	79.8
WP_080435746.1\|1414067_1414616_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	2.6e-61	61.1
WP_060445568.1\|1414618_1416100_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	9.7e-135	51.5
WP_060424625.1\|1416111_1416552_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	3.3e-46	64.4
WP_060424623.1\|1416562_1416991_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	1.9e-38	59.9
WP_089185831.1\|1417169_1419176_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	1.5e-207	57.8
WP_089185832.1\|1419175_1419781_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	6.5e-61	68.1
WP_060443291.1\|1419777_1420083_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	8.1e-20	50.0
WP_089185833.1\|1420086_1421148_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	2.5e-140	68.9
WP_089185834.1\|1421157_1421499_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	5.0e-18	45.2
WP_145958027.1\|1421590_1422370_+	hypothetical protein	NA	NA	NA	NA
WP_089186860.1\|1422410_1422764_+	hypothetical protein	NA	NA	NA	NA
WP_089185836.1\|1422816_1423575_+	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	1.9e-81	63.3
WP_015377530.1\|1423571_1423922_+	hypothetical protein	A9YX11	Burkholderia_phage	1.6e-32	61.1
WP_060437615.1\|1423914_1425105_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	4.0e-107	54.1
WP_089185837.1\|1425101_1425680_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	2.7e-40	45.9
WP_089185838.1\|1425680_1426460_+	hypothetical protein	A0A248SL44	Klebsiella_phage	8.1e-24	34.3
WP_089185839.1\|1426476_1428375_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_089185840.1\|1428375_1429092_+	hypothetical protein	NA	NA	NA	NA
WP_089185841.1\|1429517_1429940_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	8.9e-33	54.3
WP_089185842.1\|1429939_1431208_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	7.4e-176	71.3
WP_084826389.1\|1431468_1431963_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	4.8e-38	48.5
WP_084827859.1\|1432149_1433592_-	hypothetical protein	A8CG94	Salmonella_phage	3.0e-16	24.4
WP_087762336.1\|1433605_1434517_-	glycosyltransferase family 2 protein	M1FQW5	Enterobacteria_phage	3.4e-138	78.5
WP_073533859.1\|1434513_1434870_-	GtrA family protein	B9UDL8	Salmonella_phage	4.4e-33	58.0
1440436:1440453	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1568591 : 1595639

Moraxella_phage(50.0%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084826345.1\|1568591_1570010_+\|protease	serralysin family metalloprotease	NA	NA	NA	NA
WP_004931526.1\|1570156_1570366_-	hypothetical protein	NA	NA	NA	NA
WP_004931522.1\|1571142_1571535_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_060419277.1\|1571539_1572139_+	hypothetical protein	NA	NA	NA	NA
WP_004931517.1\|1572194_1572434_-	YebV family protein	NA	NA	NA	NA
WP_060440091.1\|1572569_1573502_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_089186862.1\|1573521_1575864_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_049201714.1\|1576015_1576783_-	molecular chaperone	NA	NA	NA	NA
WP_038882152.1\|1576804_1577347_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_038877669.1\|1577340_1577844_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_060440090.1\|1577846_1578383_-	fimbrial major subunit CsuA/B family protein	NA	NA	NA	NA
WP_060419268.1\|1578657_1579194_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_089185881.1\|1579465_1580902_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_084827855.1\|1581004_1583635_-	PqiB family protein	NA	NA	NA	NA
WP_049198592.1\|1583603_1584851_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_038877659.1\|1585106_1585604_+	GAF domain-containing protein	NA	NA	NA	NA
WP_033638287.1\|1585700_1586411_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_089185882.1\|1586430_1588479_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-85	33.9
WP_038877656.1\|1588546_1589392_-	DMT family transporter	NA	NA	NA	NA
WP_089185883.1\|1589388_1590696_-	opine metallophore biosynthesis dehydrogenase	NA	NA	NA	NA
WP_060440085.1\|1590688_1591486_-	nicotianamine synthase	NA	NA	NA	NA
WP_089185884.1\|1591473_1592259_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	8.8e-10	27.9
WP_060440083.1\|1592255_1593296_-	iron ABC transporter permease	NA	NA	NA	NA
WP_089185885.1\|1593298_1594390_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_033638291.1\|1594760_1595639_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_5

3339289 : 3396003

Salmonella_phage(34.04%)

lysis,head,terminase,integrase,holin,tail

attL 3372244:3372259|attR 3406473:3406488

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158524199.1\|3339289_3340396_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	8.3e-22	27.3
WP_145958032.1\|3340483_3341416_-	hypothetical protein	A9YX14	Burkholderia_phage	2.0e-16	52.3
WP_089186313.1\|3341408_3342080_-	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.7e-54	51.9
WP_089186314.1\|3342076_3343264_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	1.1e-117	57.5
WP_057523820.1\|3343263_3343617_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	4.5e-38	65.0
WP_158524209.1\|3343613_3344282_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	3.1e-80	69.2
WP_089186316.1\|3344370_3345315_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	6.1e-74	41.4
WP_057523739.1\|3345345_3345651_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	7.3e-21	50.0
WP_089186317.1\|3345637_3346234_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.1e-49	54.0
WP_089186318.1\|3346233_3348222_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	5.6e-162	46.1
WP_158524200.1\|3348211_3348388_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	2.6e-07	52.0
WP_089186319.1\|3348399_3348843_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.8e-21	40.4
WP_089186320.1\|3348853_3349294_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	1.5e-51	67.8
WP_060559269.1\|3349303_3350785_-	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	8.8e-144	53.9
WP_089186892.1\|3350788_3351220_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-42	56.9
WP_089186321.1\|3351323_3351710_-\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	4.9e-46	72.8
WP_089186322.1\|3351709_3352216_-	hypothetical protein	NA	NA	NA	NA
WP_089186323.1\|3352212_3352626_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	4.4e-53	76.1
WP_089186324.1\|3352606_3353005_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	5.4e-16	41.9
WP_089186325.1\|3353046_3353988_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	6.5e-169	93.6
WP_089186326.1\|3353999_3354497_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	4.2e-74	85.5
WP_089186327.1\|3354501_3355734_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	4.2e-192	83.9
WP_089186328.1\|3355994_3356543_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	5.3e-46	53.5
WP_060431727.1\|3356598_3358065_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.8e-245	86.7
WP_089186329.1\|3358064_3359687_-	TerL protein	A0A0M5M1R6	Salmonella_phage	2.4e-304	93.0
WP_089186330.1\|3360012_3360621_-\|terminase	terminase small subunit	A0A2I7RHM1	Vibrio_phage	2.2e-32	44.6
WP_089186331.1\|3360726_3360936_-	hypothetical protein	NA	NA	NA	NA
WP_089186332.1\|3361017_3361464_-\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	2.5e-17	41.3
WP_089186333.1\|3361460_3361895_-	lysozyme	R9TMH8	Aeromonas_phage	2.2e-34	55.2
WP_089186334.1\|3361881_3362199_-\|holin	holin	F1C5D1	Cronobacter_phage	1.1e-40	82.7
WP_089186335.1\|3362462_3363275_-	antitermination protein	M9NZB0	Enterobacteria_phage	6.8e-82	57.5
WP_060431732.1\|3363271_3363466_-	hypothetical protein	NA	NA	NA	NA
WP_089186336.1\|3363462_3364437_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.6e-67	40.6
WP_089186337.1\|3364433_3365153_-	DNA replication protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	3.8e-44	48.8
WP_089186338.1\|3365149_3366064_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.4e-53	44.5
WP_060452900.1\|3366060_3366243_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_089186339.1\|3366376_3366691_-	hypothetical protein	NA	NA	NA	NA
WP_089186340.1\|3366722_3366944_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_060446915.1\|3367051_3367729_+	helix-turn-helix domain-containing protein	W6MVG5	Pseudomonas_phage	5.6e-45	42.8
WP_089186341.1\|3368294_3368633_+	hypothetical protein	H9C159	Pectobacterium_phage	3.0e-23	50.5
WP_089186342.1\|3369043_3369256_+	hypothetical protein	NA	NA	NA	NA
WP_154582428.1\|3369249_3369393_+	hypothetical protein	NA	NA	NA	NA
WP_089186343.1\|3369396_3370182_+	hypothetical protein	C7BGF1	Burkholderia_phage	2.7e-59	51.0
WP_089186344.1\|3370660_3371392_+	hypothetical protein	Q71T76	Escherichia_phage	2.4e-62	53.3
WP_041033744.1\|3371384_3371585_+	hypothetical protein	R9VYJ0	Serratia_phage	3.5e-32	97.0
WP_089186345.1\|3372237_3372663_+	hypothetical protein	NA	NA	NA	NA
3372244:3372259	attL	NA	NA	NA	NA
WP_158524201.1\|3372664_3373213_+	HNH endonuclease	A0A1W6DXY0	Salmonella_phage	1.0e-28	39.3
WP_089186347.1\|3373213_3373654_+	hypothetical protein	NA	NA	NA	NA
WP_089186348.1\|3373684_3373903_+	hypothetical protein	NA	NA	NA	NA
WP_089186350.1\|3374126_3374498_+	hypothetical protein	NA	NA	NA	NA
WP_089186351.1\|3374512_3374701_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_089186352.1\|3374697_3375360_+	DNA methyltransferase	G8C7S6	Escherichia_phage	1.6e-89	75.4
WP_075204068.1\|3375516_3375789_+	excisionase Xis	H6WRW8	Salmonella_phage	3.4e-17	48.9
WP_089186894.1\|3375766_3376996_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	1.6e-178	67.7
WP_089186353.1\|3377760_3378597_+	hypothetical protein	NA	NA	NA	NA
WP_004929144.1\|3378593_3379070_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_025303948.1\|3379069_3380026_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_049200771.1\|3380025_3380679_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_004929136.1\|3380709_3381285_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_043128468.1\|3381463_3383101_+	L-aspartate oxidase	NA	NA	NA	NA
WP_060441112.1\|3383139_3383919_-	methyltransferase	NA	NA	NA	NA
WP_016929798.1\|3384018_3385341_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	3.6e-40	27.3
WP_089186354.1\|3385393_3386149_-	ankyrin repeat domain-containing protein	Q9JMM8	Wolbachia_phage	3.7e-05	40.2
WP_089186355.1\|3386141_3387104_-	DUF2974 domain-containing protein	NA	NA	NA	NA
WP_089186356.1\|3387287_3387671_-	autonomous glycyl radical cofactor GrcA	A0A2K9VMY2	Shigella_phage	1.0e-32	73.0
WP_089186357.1\|3388017_3388701_+	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	9.6e-53	47.4
WP_025303955.1\|3388757_3389342_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_019452304.1\|3389467_3390346_+	NAD(+) kinase	NA	NA	NA	NA
WP_089186358.1\|3390432_3392094_+	DNA repair protein RecN	NA	NA	NA	NA
WP_004929101.1\|3392334_3392673_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_004929098.1\|3392789_3393074_-	RnfH family protein	NA	NA	NA	NA
WP_086016675.1\|3393066_3393555_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_033654311.1\|3393662_3394145_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.4e-26	44.9
WP_089186359.1\|3394761_3396003_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	1.3e-103	48.4
3406473:3406488	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3925955 : 3963455

Erwinia_phage(47.5%)

lysis,head,tRNA,terminase,capsid,integrase,portal,tail,plate

attL 3932584:3932639|attR 3963497:3963552

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049198481.1\|3925955_3926969_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.3e-110	59.8
WP_001144069.1\|3927294_3927510_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_025304325.1\|3927646_3929395_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.6e-74	38.8
WP_004937194.1\|3929552_3931394_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_089186475.1\|3931449_3931902_-	polyketide cyclase	NA	NA	NA	NA
WP_060419767.1\|3931918_3932407_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
3932584:3932639	attL	NA	NA	NA	NA
WP_071998163.1\|3932787_3933018_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	3.2e-21	64.5
WP_089186476.1\|3933108_3934257_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	1.7e-126	63.6
WP_060387526.1\|3934253_3934739_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.5e-47	65.7
WP_063988651.1\|3934738_3937588_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	1.7e-103	49.9
WP_026142543.1\|3937580_3937703_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	3.0e-10	75.0
WP_060437254.1\|3937735_3938017_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.8e-26	70.1
WP_023447563.1\|3938071_3938581_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.7e-70	76.2
WP_063988650.1\|3938596_3939766_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	2.0e-183	81.4
WP_072265378.1\|3940042_3940462_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	2.0e-16	39.1
WP_089186477.1\|3940467_3943392_-	hypothetical protein	Q858V4	Yersinia_virus	1.1e-60	55.1
WP_015379109.1\|3943401_3943935_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	4.3e-77	76.6
WP_063988648.1\|3943927_3944836_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	5.6e-109	69.5
WP_063988647.1\|3944840_3945191_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	8.4e-37	65.5
WP_154619209.1\|3945187_3945328_-	hypothetical protein	NA	NA	NA	NA
WP_060437248.1\|3945338_3945968_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	2.8e-75	72.8
WP_060436851.1\|3946040_3946487_-	phage virion morphogenesis protein	O80313	Escherichia_phage	3.5e-40	58.4
WP_063988646.1\|3946473_3946950_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	3.1e-50	64.7
WP_060437246.1\|3947045_3947474_-\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	1.4e-14	37.3
WP_060437245.1\|3947470_3947983_-	lysozyme	A0A218M4K3	Erwinia_phage	4.3e-58	67.1
WP_031231709.1\|3947966_3948176_-	hypothetical protein	A0A218M4L5	Erwinia_phage	2.0e-09	43.5
WP_015379118.1\|3948180_3948384_-	phage Tail protein X	A0A0F7LCN2	Escherichia_phage	2.4e-20	68.7
WP_060437244.1\|3948383_3948872_-\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	7.3e-39	53.7
WP_043148053.1\|3948965_3949625_-\|terminase	terminase endonuclease subunit	F1BUQ7	Erwinia_phage	8.0e-81	70.3
WP_063988644.1\|3949627_3950839_-\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	4.6e-159	78.8
WP_063988643.1\|3950881_3951697_-\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	2.7e-70	52.8
WP_063988642.1\|3951839_3953612_+\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	2.6e-291	82.0
WP_145958035.1\|3953611_3954298_+\|terminase	terminase-like family protein	V9IQL5	Stenotrophomonas_phage	9.1e-19	30.5
WP_033632040.1\|3954294_3955329_+\|portal	phage portal protein	F1BUR7	Erwinia_phage	1.3e-162	80.5
WP_063988754.1\|3955373_3955715_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_071605322.1\|3955714_3955969_-	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	5.9e-16	47.6
WP_126186641.1\|3956338_3956536_-	hypothetical protein	NA	NA	NA	NA
WP_060445968.1\|3956583_3956808_-	hypothetical protein	NA	NA	NA	NA
WP_063988641.1\|3956846_3959063_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	7.5e-240	58.5
WP_048321968.1\|3959059_3959341_-	DUF5405 family protein	A0A218M4I8	Erwinia_phage	4.5e-17	51.2
WP_060426813.1\|3959463_3959688_-	hypothetical protein	Q6K1F5	Salmonella_virus	3.7e-14	56.9
WP_060437236.1\|3959687_3959999_-	DUF5405 family protein	NA	NA	NA	NA
WP_060437235.1\|3959998_3960292_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.9e-06	54.4
WP_043148063.1\|3960356_3960659_-	hypothetical protein	NA	NA	NA	NA
WP_049279101.1\|3960670_3960850_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	1.1e-05	51.0
WP_063988640.1\|3960860_3961370_-	hypothetical protein	A0A1S6L008	Salmonella_phage	2.5e-45	54.2
WP_072009646.1\|3961401_3961665_-	hypothetical protein	A0A218M4I5	Erwinia_phage	5.1e-39	89.7
WP_063988753.1\|3961800_3962388_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	1.4e-63	60.8
WP_063988639.1\|3962387_3963455_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.5e-187	92.4
3963497:3963552	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4253532 : 4262463

environmental_Halophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060424556.1\|4253532_4255611_+	hypothetical protein	H9YQA8	environmental_Halophage	1.0e-52	71.9
WP_033649310.1\|4255651_4256869_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	6.1e-26	26.4
WP_084827108.1\|4257000_4257576_-	aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.3e-68	62.6
WP_033649312.1\|4257648_4259175_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	1.9e-77	42.6
WP_047729698.1\|4259326_4260052_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_033636285.1\|4260051_4261737_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	8.8e-225	72.8
WP_060424547.1\|4261893_4262463_-	peptidylprolyl isomerase A	A0A1V0S9I2	Catovirus	1.7e-07	31.0

DBSCAN-SWA_8

5027195 : 5080861

Escherichia_phage(22.22%)

protease,integrase,transposase

attL 5051101:5051116|attR 5084236:5084251

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145958047.1\|5027195_5027378_-\|transposase	transposase	NA	NA	NA	NA
WP_089186745.1\|5028182_5031209_+\|protease	autotransporter serine protease	NA	NA	NA	NA
WP_145957281.1\|5031719_5032430_-	hypothetical protein	NA	NA	NA	NA
WP_089186747.1\|5032757_5033018_+	hypothetical protein	NA	NA	NA	NA
WP_089186748.1\|5033520_5034123_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	4.1e-47	50.0
WP_089186749.1\|5034395_5034887_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_089186750.1\|5034937_5035264_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_089186751.1\|5035285_5035729_-	DUF417 family protein	NA	NA	NA	NA
WP_089186752.1\|5035764_5036325_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_089186753.1\|5036366_5036627_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_158524180.1\|5036997_5037225_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_089186754.1\|5037365_5038394_-	CAP-Gly protein	NA	NA	NA	NA
WP_089186755.1\|5038482_5038731_-	CsbD family protein	NA	NA	NA	NA
WP_089186756.1\|5038770_5039061_-	hypothetical protein	NA	NA	NA	NA
WP_089186757.1\|5039053_5039449_-	hypothetical protein	NA	NA	NA	NA
WP_089186758.1\|5039743_5040322_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	6.6e-47	46.3
WP_089186389.1\|5040744_5041293_+	fimbrial protein	NA	NA	NA	NA
WP_089186759.1\|5041362_5041902_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_072628361.1\|5042003_5042696_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_089186760.1\|5042813_5045405_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_089186761.1\|5045426_5045951_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_089186762.1\|5045963_5046467_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_089186763.1\|5046483_5047431_+	fimbrial protein	NA	NA	NA	NA
WP_158524207.1\|5047560_5048262_+	hypothetical protein	NA	NA	NA	NA
WP_089186765.1\|5050231_5050735_+	TIGR00645 family protein	NA	NA	NA	NA
WP_089186766.1\|5050949_5052113_+	sugar transporter	NA	NA	NA	NA
5051101:5051116	attL	NA	NA	NA	NA
WP_072628369.1\|5052158_5052815_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_089186767.1\|5053364_5054123_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_089186921.1\|5055730_5057071_+	DEAD/DEAH box helicase	A0A218L3U4	Pseudomonas_phage	4.7e-19	29.1
WP_089186768.1\|5057064_5058765_+	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_089186769.1\|5058850_5059882_+\|integrase	site-specific integrase	H7BUX8	unidentified_phage	2.0e-06	21.0
WP_016929381.1\|5060310_5060886_-	transcriptional regulator	NA	NA	NA	NA
WP_084826955.1\|5060925_5062650_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_004929657.1\|5062625_5062949_-	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_038879248.1\|5063058_5064360_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_004929659.1\|5064609_5066046_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_019453406.1\|5066415_5066904_+	membrane protein FxsA	NA	NA	NA	NA
WP_004952634.1\|5067093_5067387_+	co-chaperone GroES	A0A221S322	uncultured_virus	2.5e-10	38.9
WP_084826953.1\|5067431_5069078_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.3e-183	67.2
WP_084826952.1\|5069302_5070928_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.8e-10	37.3
WP_025305007.1\|5071106_5071451_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_033636765.1\|5071533_5072562_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_004929666.1\|5072604_5073171_+	elongation factor P	NA	NA	NA	NA
WP_049202118.1\|5073241_5073373_+	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_033636766.1\|5073494_5073626_+	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_004929669.1\|5073818_5074136_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_038879243.1\|5074129_5074663_-	outer membrane lipoprotein Blc	A0A1W6JNX6	Morganella_phage	5.0e-49	55.5
WP_084826951.1\|5074747_5075107_-	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_038879241.1\|5075119_5075512_-	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_033648713.1\|5075527_5076262_-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_038879239.1\|5076254_5078051_-	fumarate reductase (quinol) flavoprotein subunit	A0A2P0ZL82	Lactobacillus_phage	4.5e-17	27.0
WP_004929681.1\|5078436_5079414_+	elongation factor P--(R)-beta-lysine ligase	NA	NA	NA	NA
WP_089185624.1\|5079541_5080861_+\|transposase	IS4 family transposase	NA	NA	NA	NA
5084236:5084251	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage