CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016278	Diaphorobacter polyhydroxybutyrativorans strain SL-205 chromosome, complete genome	1 crisprs	DEDDh,csa3,DinG,WYL	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016278_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016278_1

1080310-1080387

Orphan

Consensus_repeat	Method
CGCAGGTCGCCGCCGCAGTGCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016278_1

>merge|NZ_CP016278|1|1080310-1080387|CRISPRCasFinder
CGCAGGTCGCCGCCGCAGTGCAGCGATTCCTGCACCTGCACGCCCCAGTCGGTGCGCAGGTGGCCGCCGCAGTGCAGC

>NZ_CP016278|1|1|1080310-1080387|CRISPRCasFinder
CGCAGGTCGCCGCCGCAGTGCAGC	GATTCCTGCACCTGCACGCCCCAGTCGGTG
CGCAGGTGGCCGCCGCAGTGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016278.1\|WP_088886751.1\|1068756_1069182_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|369049
NZ_CP016278.1\|WP_088886758.1\|1083436_1083841_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016278.1\|WP_015913373.1\|1070756_1071785_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|236515
NZ_CP016278.1\|WP_015913374.1\|1069198_1070731_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP016278.1\|WP_015913363.1\|1083866_1084106_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016278.1\|WP_088886753.1\|1074871_1076701_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223953
NZ_CP016278.1\|WP_011805279.1\|1078008_1078461_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP016278.1\|WP_011805270.1\|1086388_1086727_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|238786
NZ_CP016278.1\|WP_011805273.1\|1084260_1084806_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|237597
NZ_CP016278.1\|WP_088886757.1\|1081171_1083259_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP016278.1\|WP_088888517.1\|1089209_1091915_-\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
NZ_CP016278.1\|WP_088886755.1\|1078525_1079749_-\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_CP016278.1\|WP_088886760.1\|1085646_1086357_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_CP016278.1\|WP_088886754.1\|1076701_1077871_-\|saccharopine-dehydrogenase-NADP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224662
NZ_CP016278.1\|WP_088886752.1\|1071781_1073944_-\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
NZ_CP016278.1\|WP_015913371.1\|1074068_1074704_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP016278.1\|WP_088886759.1\|1084936_1085599_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP016278.1\|WP_088886761.1\|1086797_1088141_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|236529
NZ_CP016278.1\|WP_088886762.1\|1088224_1088806_-\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|223340
NZ_CP016278.1\|WP_088886750.1\|1066671_1068720_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111

Protein	Function_ID	Function_description	E-value
NZ_CP016278.1\|WP_088886751.1\|1068756_1069182_-\|PH-domain-containing-protein	gnl\|CDD\|369049	pfam06713, bPH_4, Bacterial PH domain. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown. Members of this family have a PH domain like structure.	2.482e-30
NZ_CP016278.1\|WP_015913373.1\|1070756_1071785_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|236515	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB.	0
NZ_CP016278.1\|WP_015913374.1\|1069198_1070731_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP016278.1\|WP_011805273.1\|1084260_1084806_-\|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	6.58427e-101
NZ_CP016278.1\|WP_088886753.1\|1074871_1076701_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	2.12765e-165
NZ_CP016278.1\|WP_011805279.1\|1078008_1078461_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	6.07993e-33
NZ_CP016278.1\|WP_011805270.1\|1086388_1086727_+\|sulfurtransferase	gnl\|CDD\|238786	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.	1.35714e-29
NZ_CP016278.1\|WP_088886760.1\|1085646_1086357_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	1.38639e-65
NZ_CP016278.1\|WP_088886757.1\|1081171_1083259_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.55389e-45
NZ_CP016278.1\|WP_088888517.1\|1089209_1091915_-\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	1.91044e-125
NZ_CP016278.1\|WP_088886755.1\|1078525_1079749_-\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	1.07631e-79
NZ_CP016278.1\|WP_088886754.1\|1076701_1077871_-\|saccharopine-dehydrogenase-NADP-binding-domain-containing-protein	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	1.93165e-81
NZ_CP016278.1\|WP_088886752.1\|1071781_1073944_-\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
NZ_CP016278.1\|WP_015913371.1\|1074068_1074704_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.52269e-42
NZ_CP016278.1\|WP_088886759.1\|1084936_1085599_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.54911e-21
NZ_CP016278.1\|WP_088886761.1\|1086797_1088141_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|236529	PRK09465, tolC, outer membrane channel protein; Reviewed.	2.35168e-85
NZ_CP016278.1\|WP_088886762.1\|1088224_1088806_-\|dihydrofolate-reductase-family-protein	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	5.54782e-15
NZ_CP016278.1\|WP_088886750.1\|1066671_1068720_-\|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0

>NZ_CP016278.1|WP_088886755.1|1078525_1079749_-|chromate-efflux-transporter
MPPISPFAATRHHASAWRVFLIFLRLGLTSFGGPVAHLGYFREEFVARRGWLTEDAYADLVALCQFLPGPASSQVGLALGLRQAGWGGALAAWLGFTLPSALVMALLGLGLVAGQGLMPAGVLHGLKVAAVAVVAQAVWGMARSLCRGPARLLLMALACALALLWPGVVGQVGAMLVAALAGLALWGRASAMPAPPSQSGLAAGLRPRTGALLLAAFAALLVLLPLAARAWPQGWLVLADAFYRAGALVFGGGHVVLPLLQAEVVATGWVAADDFLAGYGLAQAVPGPLFTFAAFLGAAAGHGAGGWLDAAVCLVAIFVPAFLLVAGALPFWDRLRHNARARAALAGVNAAVVGLLLAALYHPVWTSAIHAPADLALALAAFAALVWARVPPWLVVPLCGAAGWLLG
>NZ_CP016278.1|WP_011805279.1|1078008_1078461_+|Lrp/AsnC-family-transcriptional-regulator
MPVELDALDQQLLSLLQANAREGTAELARRLGLARTTVVARIARLEREGVVAGYGVRLGQRLAGSAVRAWCALRVLPKAGPAVLQTLQALPQVEEVSAVSGPFDYLVFLRCTSHEQLDGLLDRIGQLDGVQNTQTSIVLSRKIDRRSVGG
>NZ_CP016278.1|WP_088886754.1|1076701_1077871_-|saccharopine-dehydrogenase-NADP-binding-domain-containing-protein
MTRLHPVNASHPHRVLILGAGHIGRAIALLLEDAGSYTLTVADRDAAALKRLQVNSAATLQVTDDAMLEAAISGHHAVLNALPFHQAMPVATLCARHGVHYFDLTEDVASTRAIQALAEGARSALMPQCGLAPGFIGVVGNALAQRLDRVEALQLRVGALPRYPQGALRYAMTWSTEGLINEYCNPCDAIVQGRRTSVPALDGLETLLIDGVEYEAFNTSGGLGTLPQTWEGRVQQLDYKSVRYPGHHAILQLLLHELRLRDRRDLLKELLDGAVPTTQQDVIVILASARGQRDGRLVQESYAAHILGASVRGQMLSAIQRTTAAGICAALDLVMAGQLPQAGFIGQEQIALEDFLANRFGRIYRAPGSEGDAGSAQAPLARSLQAVGA
>NZ_CP016278.1|WP_088886753.1|1074871_1076701_+|long-chain-fatty-acid--CoA-ligase
MKFPTPDLRGVQTLPELLAFRAALTPHSEAYRACDPGTGQWISLTWAQTQERVQQWSRAIAASGLPQGARIAILLPNGLEAMSIDQAVMATGCVPVPLHAIDNPGSIAYILADAEVSLLVVEEPEQWRRIRDVGMPLPHLMGVVTTNASIGLPTAAEQDVPVAPLAAWLQHAAADTPLPPPPGPEDLAAIVYTSGTTGKPKGVMLSHANVVADVKAVLERIAPTPQDVFLSFLPLSHTFERTGGYYLPMASGSCVVYARSVAQLAEDLKNVRPTVLVSVPRIYERVHAKLIETLSPSPLKMQLFQAAQAVGWKRFCAAQRLPAPQDDGAGGWMRALPWPLLRALVAKPLLAQFGGRVRVAVSGGAPLSPTIAHCFLGLGLQLVQGYGMTETTPVVSVNTLEDNDPSTVGRALPGVEVRIGENRELQLRGPIVMKGYWKRPEDTARTVSADGWLGTGDQAEIVGGRIRILGRIKEIIVTSTGEKVPPADLELAITADALFEQAFVVGEQRPFIACVAVVHAEEWRQLAGQLGLDANDPASLAHPSAQRAALARIEKLAAGFPRYAVPRAVHLVREPWTIENAFMTPTLKLKRTNLMAHYAAAIEAMYQKR
>NZ_CP016278.1|WP_015913371.1|1074068_1074704_+|GntR-family-transcriptional-regulator
MSAVTLTPRALYEQVAEQLRQRIFRRELEPGSWIDELKIAEEFGISRTPLREALKVLAAEGLVTMKVRRGAYVTEMSDKDLHDVYHLLSLLESDAAGVVAARATPEQLRELEQLHADLAAAVQDRDRFFTINERIHMRLLEMADNRWRSQMVADLRKVMKLNRHNSLLKQGRIEDSLAEHETILAALRARDPQATVAAMSAHFAHGLEAAG
>NZ_CP016278.1|WP_088886752.1|1071781_1073944_-|methylmalonyl-CoA-mutase
MSSHPDPIFQSADLAAWAKAAAKSAPGGDVNALNWVTPDGISVKPLYTAQDTQDLPYANTLPGFEPYLRGPQATMYAVRPWTIRQYAGFSTAEESNAFYRKALAAGGQGVSVAFDLATHRGYDSDHPRVTGDVGKAGVAIDSVEDMKILFDGIPLDKVSVSMTMNGAVLPVLAGYVVAAEEQGVSQDKLAGTIQNDILKEFMVRNTYIYPPKPSMRIIGDIIEYTSKNMPKFNSISISGYHMQEAGANQALELAFTLADGKEYVKTAIAKGMDVDDFAGRLSFFWAIGMNFYLEIAKMRAARLLWCRIMKGFNAKNPKSLMLRTHCQTSGWSLTEQDPYNNVVRTTIEAMAAVFGGTQSLHTNALDEAIALPTEFSARIARNTQLIIQEETHITNVIDPWAGSYMMEKLTQDMADAAWKIIEEVEAMGGMTAAVDSGWAKLKIEAAAAEKQARIDSGKEVIVGVNKYKLAKEDPVDILEVDNVKVRENQIARLNAIKAKRDQAQVQQALDALTSAAESGQGNLLDLSIQAIRARATVGEVSDALEKIFGRHRADTQKVTGVYAAAYDSAEGWEKLKGEIDQAAEQLGRRPRVMIAKLGQDGHDRGAKVVATAFADLGFDVDMGPLFQTPEECARQAIENDVHAVGVSTLAAGHKTLVPAIIEELKKQGADDIIVFVGGVVPAQDYDFLYGAGVKGVYGPGTPIPASAKDVLEQIKKAQAQ
>NZ_CP016278.1|WP_015913373.1|1070756_1071785_-|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MTPQQLQEGILHGAPAVRRRAMAKAITLLESTRADHRTQGDELLTALLPHTGRAFRLGISGVPGVGKSTFIEALGLHLIAQGLKVAVLAIDPSSTVSGGSILGDKTRMEHLSVHPDAYIRPSPSSGTLGGVAEKTREAMLVCEAAGYDVVIIETVGVGQSEIAVQGMTDMFCVLQLPNAGDDLQAIKKGVMELADLVVINKADIDPHAATRAQAQITSSLRLLSMHGNPEHAHHDESLWTPKVITLSALKGEGVDGFWAAVQEFRRLQTANGRLAARRERQSLAWMWERIDAGLKQAFRQHPQVRELLPRLQQDVAAGRVAASTAARNLLAAQSGQALQATI
>NZ_CP016278.1|WP_015913374.1|1069198_1070731_-|acyl-CoA-carboxylase-subunit-beta
MQDILDQLEKKRELARLGGGQKRIDAQHKKGKLTARERIELLLDDGTFEEWDMFVEHRCTDFGMENTKIPGDGVVTGYGMINGRLVFVFSQDFTVFGGALSETHAEKICKVMDQAMKVGAPVIGLNDSGGARIQEGVASLGGYADVFQKNVLASGVIPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPEVVKTVTHEEVTAEELGGAITHTTKSGVADMAFENDVEALMMLRRLYNYLPLNNKEKAPVRPSNDPADRADLSLDTLVPDNPNKPYDMKELIVKTVDDGDFFELQPDYAKNILIGFARMEGQTVGIVANQPLVLAGCLDIKSSIKAARFVRFCDAFNIPVITFVDVPGFMPGTSQEYGGIIKHGAKLLYAYAECTVPKITVITRKAYGGAYDVMSSKHLRGDVNLAWPNAEIAVMGAKGAVEIIFREDKNDPAKLAAREAEYKARFANPFVAGARGFIDDVILPHETRKRICRSLAMLKNKQLDNPWRKHGNIPL
>NZ_CP016278.1|WP_088886751.1|1068756_1069182_-|PH-domain-containing-protein
MMHTRPVFFSRVDGWILAIGPVTGLAAVGMALPPALRSGATAEVAVLGIVIASTLILPIWLLLDTHYTFTADTLRVQCGPFCWRIALAEVTEVSPSRSWVSSPALSLDRLRIRYGRGRSILLSPREKQRFVEQLRQQCPTF
>NZ_CP016278.1|WP_088886750.1|1066671_1068720_-|acetyl/propionyl/methylcrotonyl-CoA-carboxylase-subunit-alpha
MFTKILIANRGEIACRVIATAKKMGIATVAVYSDADKDARHVKLADEAVHIGAAPSRESYLLADKIIAACKQTGAQAVHPGYGFLSENEAFAKRVEEEGIVFIGPKHAAIAAMGDKIASKKLANQAGVNTIPGYNDPIAGPEAAVEIAKGIGYPVMIKASAGGGGKGLRVAFNDKEAFEGFASCQNEARNSFGDDRIFIEKFVQEPRHIEIQVLGDAHGNVIYLNERECSIQRRHQKVIEEAPSPFISDATRKAMGEQAVALAKAVGYQSAGTVEFVVGKDQDFYFLEMNTRLQVEHPVTECITGLDLVELMIRVAAGEKLAIRQEDVKRDGWAIECRINAEDPFRNFLPSTGRLVRFQAPEESMFQGDTTKKYGVRVDTGVFEGGEIPMYYDSMIAKLIVHGQDRNDAIEKMRAALNGFVIRGISSNIPFQAALLAHPKFVAGQFNTGFIAEHYGKGFAAEDVPHDDPLFLVALAAYMNRRYRARASGISGQLTGHEVQVGAQFTVVVLGAQGNNIHHEVTVTDYEPESRSSAVTIGNTTYRISSTAGLGDIRVQGQCNGKGFTAQVERGTAKNPLALRISHNGTQIDALVLSPLGAKLHQLMPFKAPPDLSKFLLSPMPGLLVDVAVQPGQKVQAGEKLAVIEAMKMENILFAAQDGVVGKIVAGKGESLAVDQVILEFQ
>NZ_CP016278.1|WP_088886757.1|1081171_1083259_-|TonB-dependent-receptor
MNSFTPFARMPGAMHPLAWAALLCLTSAAPAWAQADARLPEVTVSSSGLQLGVSEMTQPVSVLEGDALVRQREATLGETLDGEPGITGSHFGAGASRPVIRGMDGPRVRVLSDGSELHDASTVSPDHAVAAEPLLATQVEVLRGPSALVYGGGAVGGVVNVLDGKVPTAVPDKGYEGSAELRAGSAAREKAGAVALTGGAGNLAVHVEAAGRDADDYRVGSGWAEGRRVPGSFNRTGTGSVGLSWVGSRGYLGLAFTRQNAKYGLPGHSHSFEGCHTHGNHLHCGSHDEHDHDDDGHDHDHDHGHEAVPVVDLRSERVDIRGELRDPFTGFSALRLRAGVTDYVHDEVEEGTVATTFKNKAHDLRVELQHEPVAGWRGVLGLQTGQRKFSAAGEEAYVQPTLTRQWGVFLLEEYRLGDWHGDWRIETALRHDRQSAEAQDSGVERRHHGTSASLGAVWRFAPGYAAGASITRAHRAPTAEELYARGLHMATSTYERGDASLRAETSRNIDLSLRKTSGDTTFDVSVFHNRIRNYIYGRTLDELDGLQLLQYSQAGATFTGMEGRVRQRITQRLGVTLFGDSVRARLDGGERLPRIAPARVGLRLDANWRDWDGAVEWVQVARQNRVAAFETATPGYGMLNLGLAYNGRTGSGTPWQVYLKARNLTDRLAYAHTSFIKDAAPLAGRNVTVGVRVSF
>NZ_CP016278.1|WP_088886758.1|1083436_1083841_-|hypothetical-protein
MSLTPALMLHLRRRLALAWLLLALVLAPALGRMHQVLHLPAGQGLAHALHDDGHARDAASAGQQALDTLHALFAGHGAADCQVLDEQTLVGAALGQAPAQVQAQPQLPPVRSAAPVPRAGRAAPFHARAPPLSA
>NZ_CP016278.1|WP_015913363.1|1083866_1084106_-|hypothetical-protein
MKPWLATLLLGCAAVAHAQEHTAQQTKVDIERHRAMAAAHEAAAKCLESGKGEETCRKELQAACKNLAIGKYCGMKHAH
>NZ_CP016278.1|WP_011805273.1|1084260_1084806_-|peptide-methionine-(S)-S-oxide-reductase-MsrA
MSDLQSITLGGGCFWCTEAVFDRVRGVTDVQSGYANGDVAEPTYEQVCSGTTGHAEVVRVTFDPAQIGVREILEIFFATHDPTTLNRQGNDVGTQYRSAIYFTDPAHQDVAEELLRQMGQDKLFGAPVVTEVAPLVNYWPAEDYHQDYYRNHPNQGYCAFVVGPKVEKFRKTFARHLKPGA
>NZ_CP016278.1|WP_088886759.1|1084936_1085599_+|TetR/AcrR-family-transcriptional-regulator
MAALPPVPESSEPPRRGRRKEARPGELLDAALDLFVEKGFAATRVDEVAARAGVSKGTLFLYFPSKEDLFKAVVRKNIAGRFPEWDLEMETFEGTSSELVQYCFQTWWERVGSTKASGLGKLMLSEANNFPEIAEFYRREVVEPGHRLIRRILQRGMDRGEFRPLDLDHAVYLVLAPLMFLMFSQPSLSLCIPNPDTFSAQEYIRLQAENVLQGLCVRPT
>NZ_CP016278.1|WP_088886760.1|1085646_1086357_+|protein-L-isoaspartate-O-methyltransferase
MNMPLNTSADICDPTEQARYNMVEQQIRPWNVLDEAVLELLATVRREEFVPPAYQGAAFIDTQIPLNPSVEEAERLGQVMLAPRVDARMLQDLQVQSTDRVLEIGAGSGYMAALLAARAERVVSLEIVPELAEFARENLRSAGVDNAEVRQSDGALDPIPDGPFDVIVLSGSVAEIPQRLLGLLRDGGRLGAFVGHTPMMRATFVRRQGDRYETTQPWDVVVPRLRHFPEPTRFKF
>NZ_CP016278.1|WP_011805270.1|1086388_1086727_+|sulfurtransferase
MIDHVRPAQLADWLTANAGSRPLVLDVREPWELQTASVTPQGFELVAIPMGELAARLDELDPARPVACLCHHGMRSLRVAGFLAHQGFDQVANITGGIEAWSHERDPAVPRY
>NZ_CP016278.1|WP_088886761.1|1086797_1088141_+|TolC-family-outer-membrane-protein
MTSLQRLLSVSLAVGACALGALPAQAQSLSTLVEWARSYDAPWQAAQAQLQAADSRAEQARAGLLPSAALNGGVTYARTDLTRGPLPPLDLHAPTQTVGVVASQPLYRPANRIGFEQGQRGIDIARAQRDGAEQDLLVRVSQAYFDVLAAQDTLTFVQAQKAAVAEQLAAAKRNFEVGTATVTDEREAQARHDLVSAQEIAAENDLHVKRLALEQTVGRSGLTPLPLAQPVQLPAVQPTDVNSWVHVAEDQQPQVRQAAIALDVARLETAKAETGHLPTVDLQAGYSVQRTPNGTVTMPGVHSRANVASVGVALNLPLFAGFAVQNRVKETLSLEDKARADLDNARRNVAQATRAAFFGVQSGQSQVRALQAAEASTQSALEANQLGYEVGVRINIDVLNAQSQLYQTKRDLAVARYNVLMGTLRLKQAAGTLSMDDVVAVDSLLSR
>NZ_CP016278.1|WP_088886762.1|1088224_1088806_-|dihydrofolate-reductase-family-protein
MKTQYFTATSLDGFLATEDDSLDWLFTLGSLEESSYPAFIAQVGALAMGSSTYEWMLRNADAVRAETGSAWPYTQPAWVFSSRRLPGIDGADIRFVQGDVRPVHAAMRLAAGTKNLWVVGGGDLAGQFYDAGLLDELILQVGSITLGRGKPLFPRRLPSTALRLLDAQPLGTGMVELRYAVNRTGDAAGFDRE
>NZ_CP016278.1|WP_088888517.1|1089209_1091915_-|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase
MMDKHYLTPLFTPSSIVVLAGNADAPDTHTPQAKVLREALAAQRFTGTLTYLDIHTSGTLADLAQTRADLAIIAQPPQDLPAALEVAGRINCRSALVLSNGVDAQLAEQLRKIARREGIHLLGPNSLGMQRPSLQLNASAAGPLAREGSLALVCQSGALTSSILDWASNNAVGFSSVISLGPHTDVGLSEALDFLANDARTQSIVVYMEGIQNARRFMSALRSAAYAKPVVVLKAGRKPAGNEAAQTHSAAIVGSDDVFDAALRRAGAVRVRSFVELFSAAKCLASRYRPVGKRLAIITNGGGPGVLAADWENEIGLDLGRFSSETCAALAPKLPPLASLADLIDLSEEAGPEHYRLALEAAFRDKQIDGLLAIFSPKAGADAEAVATVLADAKRLASKPLLSCWMGDASVVPARRILRAAQIPTFRTPEAAVGAFGNIASFYQNQQLLQQTPPPLTTLSKPDIEGARLVIESVLAERRNVLTEMESKTLLAAFHIPVTKTLLARSSHEAMMIATQLGFPVALKIDSPDIAHKSDVGGVALNVHNGSAARDAYTDMVQRVARVQPGARINGVTVQKMARGRRGRETCIGLVSDEPFGPVITFGAGGTMIELINDRAMELPPLNQFLARRLIDRSRVAETLGEWRGATAVDLEGLEQVLLRVSEMVCALPQLREMDINPLIVDEQGAVAVDARIVIHETAQGGSRGEVAGYGHYGHLSILPYPARYEAVWPLRGGGEYLVRPIRPDDAQMVQRLVKELSPESRYFRFVSQLAELPPSMLARFTLIDYDREMALVAVHRERVVDEEGEVSHKERIVGVSRYVTNPDQTSCEFALLVADDFAGKGLGSRLMLSIMDVARDRGLAEIQGLVLANNPTMLKLMRRLGFEVRTFEDDPEFRLVVHQL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016278_1	1.1\|1080334\|30\|NZ_CP016278\|CRISPRCasFinder	1080334-1080363	30	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	452784-452813	5	0.833
NZ_CP016278_1	1.1\|1080334\|30\|NZ_CP016278\|CRISPRCasFinder	1080334-1080363	30	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	71268-71297	6	0.8
NZ_CP016278_1	1.1\|1080334\|30\|NZ_CP016278\|CRISPRCasFinder	1080334-1080363	30	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	39322-39351	7	0.767

1. spacer 1.1|1080334|30|NZ_CP016278|CRISPRCasFinder matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 5, identity: 0.833

----gattcctgcacctgcacgccccagtcggtg	CRISPR spacer
cggagatt----cacctccacgccccagtcggtg	Protospacer
    ****    ***** ****************

2. spacer 1.1|1080334|30|NZ_CP016278|CRISPRCasFinder matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 6, identity: 0.8

-gattcctgcacctgcacgccccagtcggtg	CRISPR spacer
cggatgttg-acctccacgccccagtcggtg	Protospacer
 *. * .** **** ****************

3. spacer 1.1|1080334|30|NZ_CP016278|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 7, identity: 0.767

gattcctgcacctgcacgccccagtcggtg	CRISPR spacer
cgctcgagcgcctgcacgccccagtcggcg	Protospacer
 ..**  **.******************.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1823283 : 1831815

Ralstonia_virus(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088887221.1\|1823283_1824027_-	immunity 52 family protein	A4PE26	Ralstonia_virus	3.3e-75	56.8
WP_088887222.1\|1824023_1824626_-	hypothetical protein	A4PE25	Ralstonia_virus	9.0e-63	60.4
WP_088887223.1\|1824625_1824976_-	hypothetical protein	NA	NA	NA	NA
WP_088887224.1\|1824959_1825463_-	DUF4123 domain-containing protein	A4PE24	Ralstonia_virus	9.5e-50	58.5
WP_088887225.1\|1825465_1825882_-	PAAR domain-containing protein	A4PE23	Ralstonia_virus	6.1e-26	50.8
WP_088888565.1\|1825878_1826505_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_088887226.1\|1826596_1828753_-	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	2.2e-39	25.5
WP_187306037.1\|1828972_1829719_+	hypothetical protein	NA	NA	NA	NA
WP_088887228.1\|1829671_1830274_-	nitroreductase	NA	NA	NA	NA
WP_148665158.1\|1830345_1831035_-	DUF2325 domain-containing protein	NA	NA	NA	NA
WP_088887230.1\|1831236_1831815_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.3e-15	31.0

DBSCAN-SWA_2

2464533 : 2473500

Roseobacter_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012655679.1\|2464533_2465568_+	bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase	A0A1B0V161	Roseobacter_phage	5.3e-63	41.5
WP_011804151.1\|2465778_2466069_+	co-chaperone GroES	A0A221S4A8	uncultured_virus	2.9e-19	46.8
WP_088887576.1\|2466159_2467800_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	6.0e-170	63.3
WP_088887577.1\|2468069_2469236_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.6e-13	33.3
WP_088887578.1\|2469266_2470883_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_088887579.1\|2470879_2471830_-	transaldolase	A0A1D8KSY7	Synechococcus_phage	2.4e-09	33.3
WP_088887580.1\|2472024_2473500_+	glucose-6-phosphate dehydrogenase	M4QQY0	Cyanophage	8.4e-62	33.3

DBSCAN-SWA_3

2868443 : 2881248

Acinetobacter_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088887791.1\|2868443_2869157_-	uracil-DNA glycosylase	A0A1L5JKJ8	Bubaline_alphaherpesvirus	6.9e-46	48.0
WP_088887792.1\|2869211_2871884_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	8.7e-17	34.3
WP_088887793.1\|2872022_2872823_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.4e-63	52.1
WP_172205614.1\|2872893_2873067_-	hypothetical protein	NA	NA	NA	NA
WP_088887794.1\|2873077_2874112_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	4.3e-81	46.5
WP_088887795.1\|2874210_2874783_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.2e-66	62.1
WP_088887796.1\|2874779_2875124_-	chorismate mutase	NA	NA	NA	NA
WP_012655421.1\|2875120_2876620_-	anthranilate synthase component I	S4VT78	Pandoravirus	1.1e-40	29.9
WP_011803828.1\|2876976_2877579_+	chalcone isomerase family protein	NA	NA	NA	NA
WP_088887797.1\|2877700_2879437_+	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.2e-11	32.7
WP_088887798.1\|2879472_2881248_+	cache domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-11	56.2

DBSCAN-SWA_4

3446867 : 3474518

Burkholderia_phage(33.33%)

integrase,head,transposase

attL 3440239:3440255|attR 3473483:3473499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3440239:3440255	attL	NA	NA	NA	NA
WP_088888122.1\|3446867_3447413_-	phage virion morphogenesis protein	A0A1B0T6E8	Thiobacimonas_phage	1.7e-23	40.9
WP_088888123.1\|3447516_3448710_-\|head	head morphogenesis protein	M4SNU0	Rhodobacter_phage	5.2e-62	37.6
WP_088888124.1\|3448702_3450184_-	DUF935 family protein	A4JWJ5	Burkholderia_virus	1.5e-135	52.0
WP_088888125.1\|3450184_3451651_-	hypothetical protein	A4JWJ4	Burkholderia_virus	1.2e-124	48.4
WP_088888126.1\|3451650_3452196_-	DUF3486 family protein	A0A2H4JD50	uncultured_Caudovirales_phage	3.4e-29	45.8
WP_088888127.1\|3452199_3452508_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	3.2e-24	53.1
WP_088888128.1\|3452507_3452852_-	hypothetical protein	NA	NA	NA	NA
WP_088888129.1\|3452841_3453426_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_088888130.1\|3453422_3453965_-	lysozyme	A0A1B1P9G1	Acinetobacter_phage	5.9e-13	36.1
WP_148665191.1\|3454082_3454949_-	hypothetical protein	NA	NA	NA	NA
WP_187305980.1\|3454960_3455473_-	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_148665192.1\|3455469_3455904_-	hypothetical protein	NA	NA	NA	NA
WP_088888132.1\|3455914_3456295_-	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	2.9e-11	40.3
WP_088888133.1\|3456458_3456692_+	DNA-binding protein	Q6QID3	Burkholderia_phage	2.9e-09	50.8
WP_088888134.1\|3456770_3457043_-	hypothetical protein	NA	NA	NA	NA
WP_013516994.1\|3457150_3457621_+	hypothetical protein	Q6QID6	Burkholderia_phage	5.4e-31	45.5
WP_013516993.1\|3457624_3457810_+	hypothetical protein	A0A1W6JTA7	Pseudomonas_phage	1.4e-06	51.9
WP_088888135.1\|3457821_3458136_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_088888136.1\|3458147_3459086_+	hypothetical protein	Q6QID9	Burkholderia_phage	5.0e-76	59.6
WP_088888137.1\|3459096_3460845_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	1.2e-123	44.7
WP_088888138.1\|3460841_3462050_+	AAA family ATPase	Q6QIE1	Burkholderia_phage	5.6e-88	46.8
WP_187305981.1\|3462053_3462206_+	hypothetical protein	NA	NA	NA	NA
WP_088888139.1\|3462202_3462469_+	hypothetical protein	NA	NA	NA	NA
WP_088888140.1\|3462465_3463077_+	hypothetical protein	A0A2H4JFV8	uncultured_Caudovirales_phage	2.8e-19	42.7
WP_148665193.1\|3463073_3463274_+	hypothetical protein	NA	NA	NA	NA
WP_187305982.1\|3463285_3463540_+	hypothetical protein	NA	NA	NA	NA
WP_187305983.1\|3463551_3464076_+	host-nuclease inhibitor Gam family protein	NA	NA	NA	NA
WP_148665195.1\|3464079_3464298_+	hypothetical protein	NA	NA	NA	NA
WP_088888143.1\|3464294_3465197_+	recombination-associated protein RdgC	A0A218M310	Acidovorax_phage	2.4e-112	68.9
WP_088888647.1\|3465304_3465538_+	hypothetical protein	NA	NA	NA	NA
WP_088888144.1\|3465541_3465781_+	hypothetical protein	NA	NA	NA	NA
WP_088888145.1\|3465777_3466224_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	1.3e-10	33.8
WP_088888146.1\|3466216_3466642_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_088888147.1\|3466762_3467956_+	peptidase	Q6QIB7	Burkholderia_phage	7.7e-66	39.9
WP_088888148.1\|3467989_3468925_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.3e-94	57.1
WP_088888149.1\|3468927_3469272_+	hypothetical protein	NA	NA	NA	NA
WP_088888150.1\|3469278_3469617_+	DUF2190 family protein	NA	NA	NA	NA
WP_088888151.1\|3469622_3470138_+	DUF1320 family protein	NA	NA	NA	NA
WP_088888152.1\|3470139_3470619_+	hypothetical protein	NA	NA	NA	NA
WP_088888153.1\|3470621_3471389_+	hypothetical protein	A0A1B0YZT8	Pseudomonas_phage	9.2e-12	27.6
WP_088888154.1\|3471473_3474518_+	tape measure protein	A0A0A1IX77	Pseudomonas_phage	3.6e-59	52.0
3473483:3473499	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage