CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011252	Bacillus amyloliquefaciens strain MT45 chromosome, complete genome	0 crisprs	csa3,DinG,casR,cas3,DEDDh,WYL	0	0	9	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

574978 : 627522

Bacillus_phage(36.96%)

transposase,tail,terminase,integrase,holin,coat,protease,portal,tRNA,head

attL 585169:585187|attR 628691:628709

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088612250.1\|574978_575455_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_013351178.1\|575435_576125_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_013351179.1\|576135_576591_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_088612251.1\|576583_577624_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.1e-63	42.3
WP_088612252.1\|577847_579776_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	4.6e-60	32.6
WP_038457105.1\|579915_580428_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_013351182.1\|580424_581072_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_003155981.1\|581090_581261_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_088612253.1\|581267_582029_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_003155975.1\|582067_582259_-	YdiK family protein	NA	NA	NA	NA
WP_013351184.1\|582255_582990_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_013351185.1\|583226_583511_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	3.7e-19	51.6
WP_013351186.1\|583552_585187_+	chaperonin GroEL	A0A219YK78	uncultured_virus	3.7e-159	57.5
585169:585187	attL	NA	NA	NA	NA
WP_088612254.1\|585265_586477_-\|integrase	tyrosine-type recombinase/integrase	S6C485	Thermus_phage	4.0e-78	41.8
WP_088612255.1\|586488_586962_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	1.8e-21	34.5
WP_088612256.1\|587145_587706_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	2.7e-29	46.7
WP_088612257.1\|587991_588369_-	helix-turn-helix transcriptional regulator	A0A288WFW4	Bacillus_phage	3.2e-10	35.4
WP_088612258.1\|588524_588743_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071181570.1\|588755_589061_+	hypothetical protein	NA	NA	NA	NA
WP_088612259.1\|589057_589786_+	phage regulatory protein	A0A2H4J4N4	uncultured_Caudovirales_phage	7.0e-86	62.9
WP_003155916.1\|589843_590416_+	helix-turn-helix transcriptional regulator	A0A2H4J884	uncultured_Caudovirales_phage	1.3e-58	55.0
WP_044803182.1\|590412_590670_+	hypothetical protein	A0A2H4J4M9	uncultured_Caudovirales_phage	1.1e-09	41.8
WP_044803180.1\|590844_591042_+	hypothetical protein	NA	NA	NA	NA
WP_044803179.1\|591143_591329_+	hypothetical protein	NA	NA	NA	NA
WP_088612260.1\|591328_592279_+	YqaJ viral recombinase family protein	A0A2H4JA52	uncultured_Caudovirales_phage	1.3e-129	70.8
WP_088612261.1\|592281_593124_+	recombinase RecT	A0A2H4JCY8	uncultured_Caudovirales_phage	9.5e-127	84.0
WP_088612262.1\|593288_594014_+	DnaD domain protein	A0A2H4J6G9	uncultured_Caudovirales_phage	3.7e-39	41.2
WP_088612263.1\|593931_594726_+	ATP-binding protein	A6XMI1	Bacillus_virus	1.5e-62	50.4
WP_088612264.1\|595007_595193_+	hypothetical protein	NA	NA	NA	NA
WP_088612265.1\|595189_595489_+	hypothetical protein	A0A2H4J4P5	uncultured_Caudovirales_phage	5.9e-31	71.0
WP_071347885.1\|595475_595934_+	DUF1064 domain-containing protein	A0A2H4J891	uncultured_Caudovirales_phage	1.7e-58	79.3
WP_003155894.1\|596287_596491_+	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	3.4e-22	75.4
WP_053574371.1\|596522_596906_+	hypothetical protein	NA	NA	NA	NA
WP_053574372.1\|596902_597133_+	hypothetical protein	J9PL10	Bacillus_phage	3.6e-12	46.7
WP_088612266.1\|597353_597611_+	hypothetical protein	F8WQ54	Bacillus_phage	1.2e-05	42.3
WP_088612267.1\|597766_598249_+	hypothetical protein	A0A059VFZ8	Pseudomonas_phage	1.5e-15	35.1
WP_088613821.1\|598349_598625_+	hypothetical protein	F8WQ59	Bacillus_phage	1.8e-18	48.4
WP_088612268.1\|598621_599053_+	hypothetical protein	M4ZRL6	Bacillus_phage	2.4e-73	88.8
WP_063636452.1\|599053_599281_+	hypothetical protein	A0A217EQZ3	Bacillus_phage	2.0e-23	63.5
WP_003155883.1\|599296_599479_+	hypothetical protein	A0A1P8CWX9	Bacillus_phage	1.6e-10	53.7
WP_073982302.1\|599483_599699_+	hypothetical protein	A0A0A0RSQ1	Bacillus_phage	1.2e-09	46.4
WP_073982277.1\|599698_599881_+	hypothetical protein	NA	NA	NA	NA
WP_073982279.1\|600248_600467_+	hypothetical protein	NA	NA	NA	NA
WP_088612269.1\|600472_600907_+	hypothetical protein	A0A2H4J8A0	uncultured_Caudovirales_phage	9.1e-49	70.7
WP_088612270.1\|600917_601100_+	hypothetical protein	NA	NA	NA	NA
WP_003155870.1\|601534_601663_+	hypothetical protein	NA	NA	NA	NA
WP_015239615.1\|601676_602192_+	sigma-70 family RNA polymerase sigma factor	A0A1L2JY33	Aeribacillus_phage	4.0e-27	43.2
WP_003155868.1\|602732_602945_+	helix-turn-helix domain-containing protein	A0A1Z1LZP5	Bacillus_phage	9.6e-12	52.9
WP_088612271.1\|603078_603258_+	hypothetical protein	NA	NA	NA	NA
WP_088612272.1\|603399_603828_+\|terminase	terminase small subunit	A0A0K2CNQ5	Brevibacillus_phage	4.2e-46	66.7
WP_088612273.1\|603824_605096_+\|terminase	PBSX family phage terminase large subunit	A0A1Q1PVS1	Bacillus_phage	1.4e-195	79.7
WP_088612274.1\|605117_606566_+\|portal	phage portal protein	A0A1Q1PVT0	Bacillus_phage	1.1e-122	48.5
WP_088612275.1\|606552_607470_+\|head	phage head morphogenesis protein	A0A1Q1PVS0	Bacillus_phage	2.2e-81	51.5
WP_088612276.1\|607630_608296_+	scaffolding protein	I1TLE1	Bacillus_phage	2.6e-23	48.6
WP_088612277.1\|608308_609289_+\|coat	coat protein	D2J006	Enterococcus_phage	1.3e-47	37.1
WP_013351227.1\|609551_609743_+	hypothetical protein	NA	NA	NA	NA
WP_088612278.1\|609747_610044_+	hypothetical protein	Q4ZBR3	Staphylococcus_phage	9.6e-10	40.4
WP_088612279.1\|610040_610379_+\|head	phage head closure protein	NA	NA	NA	NA
WP_007408589.1\|610371_610788_+	HK97 gp10 family phage protein	O48447	Bacillus_phage	7.4e-32	54.2
WP_088612280.1\|610806_611205_+	DUF3168 domain-containing protein	W8EK61	Geobacillus_phage	1.1e-24	43.8
WP_088612281.1\|611218_611731_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_088612282.1\|611672_611987_+	fibronectin type III domain-containing protein	Q0PDK9	Bacillus_phage	1.7e-25	76.5
WP_076983423.1\|612000_612243_+	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_053574170.1\|612300_612807_+	hypothetical protein	I6T7F0	Staphylococcus_virus	1.5e-10	32.7
WP_041481949.1\|612854_613163_+	hypothetical protein	NA	NA	NA	NA
WP_088612283.1\|613167_618309_+	hypothetical protein	M9NRJ5	Staphylococcus_phage	7.7e-38	27.2
WP_013351236.1\|618305_619070_+\|tail	phage tail family protein	NA	NA	NA	NA
WP_088612284.1\|619082_622466_+	hypothetical protein	Q5YA57	Bacillus_phage	1.5e-130	45.5
WP_088612285.1\|622479_622869_+	hypothetical protein	NA	NA	NA	NA
WP_003155837.1\|623007_623175_+	XkdX family protein	NA	NA	NA	NA
WP_017417520.1\|623187_623409_+	hypothetical protein	NA	NA	NA	NA
WP_013351240.1\|623470_623749_+	protein xhlA	A0A2H4JD40	uncultured_Caudovirales_phage	1.1e-28	71.7
WP_014470539.1\|623764_624028_+\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	2.0e-27	69.0
WP_088612286.1\|624082_625246_+	N-acetylmuramoyl-L-alanine amidase	A0A1P8CWN6	Bacillus_phage	1.1e-67	48.5
WP_088612287.1\|625259_625475_-	hypothetical protein	NA	NA	NA	NA
WP_088612288.1\|625556_626057_+	hypothetical protein	NA	NA	NA	NA
WP_088612289.1\|626372_627522_+\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	4.3e-37	59.0
628691:628709	attR	NA	NA	NA	NA

DBSCAN-SWA_2

679903 : 697098

Streptococcus_phage(92.31%)

integrase

attL 670886:670903|attR 686958:686975

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
670886:670903	attL	NA	NA	NA	NA
WP_161493067.1\|679903_680971_+	peptidoglycan DD-metalloendopeptidase family protein	A0A1S5SEZ8	Streptococcus_phage	3.0e-21	39.9
WP_088612323.1\|681002_681494_+	hypothetical protein	NA	NA	NA	NA
WP_088612324.1\|681547_681958_+	hypothetical protein	NA	NA	NA	NA
WP_088612325.1\|682141_682342_+	DUF3173 domain-containing protein	NA	NA	NA	NA
WP_088612326.1\|682334_683609_+\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	3.3e-22	26.6
WP_088612327.1\|683958_684153_+	hypothetical protein	NA	NA	NA	NA
WP_088612328.1\|684168_684720_+	DNA methyltransferase	A0A0M3LPV8	Mannheimia_phage	1.0e-65	66.1
WP_088612329.1\|684821_685136_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	2.9e-41	79.6
WP_088612330.1\|685149_685530_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.2e-42	70.1
WP_088612331.1\|685532_686870_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	3.8e-162	66.0
WP_088612332.1\|687098_688286_+	helix-turn-helix domain-containing protein	A0A1S5SEX3	Streptococcus_phage	3.4e-154	66.9
686958:686975	attR	NA	NA	NA	NA
WP_088612333.1\|688413_688635_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	3.1e-29	90.4
WP_088612334.1\|688704_689718_+	hypothetical protein	NA	NA	NA	NA
WP_088612335.1\|689783_690284_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	4.7e-57	66.7
WP_088612336.1\|690357_690996_+	hypothetical protein	NA	NA	NA	NA
WP_088612337.1\|691073_691466_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.5e-46	66.9
WP_088612338.1\|691449_693903_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	78.9
WP_088612339.1\|693907_696079_+	hypothetical protein	A0A1S5SF30	Streptococcus_phage	3.0e-156	55.2
WP_162495007.1\|696087_697098_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	1.1e-132	69.0

DBSCAN-SWA_3

716979 : 726870

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014469853.1\|716979_718272_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.3e-18	27.3
WP_065523169.1\|718347_719067_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	4.4e-48	45.2
WP_014469855.1\|719066_719321_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FKD5	Synechococcus_phage	2.1e-05	35.8
WP_045508036.1\|719317_720001_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_088612351.1\|719984_722213_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.7e-159	40.9
WP_014469858.1\|722188_723619_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.8e-54	32.9
WP_088612352.1\|723710_724751_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	4.8e-64	41.4
WP_014469860.1\|724747_725335_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.0e-26	39.9
WP_088612353.1\|725331_726870_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	6.7e-78	51.7

DBSCAN-SWA_4

1289471 : 1325901

Bacillus_phage(31.25%)

tail,terminase,plate,capsid,portal,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088612637.1\|1289471_1290824_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.6e-14	24.9
WP_088612638.1\|1291243_1291435_+	Mas-related G-protein coupled receptor member D	NA	NA	NA	NA
WP_045506757.1\|1291601_1292366_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_088612639.1\|1292509_1292977_-	hypothetical protein	NA	NA	NA	NA
WP_088030497.1\|1293181_1294318_+	tetratricopeptide repeat protein	A0A1P8CWN8	Bacillus_phage	2.2e-94	47.9
WP_003154881.1\|1294307_1294442_+	PhrA family phosphatase inhibitor	NA	NA	NA	NA
WP_088612640.1\|1294585_1295545_+	LysM peptidoglycan-binding domain-containing protein	A0A218KC88	Bacillus_phage	9.9e-64	69.9
WP_013351931.1\|1295582_1295960_-	PH domain-containing protein	A5GYQ0	Lactococcus_phage	3.3e-15	37.6
WP_088612641.1\|1296069_1296672_+	poly-gamma-glutamate hydrolase family protein	A0A0Y0AJU6	Bacillus_phage	1.6e-40	46.3
WP_013351933.1\|1296812_1297403_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	1.8e-39	52.3
WP_013351934.1\|1297550_1297889_-	helix-turn-helix transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	9.9e-19	49.2
WP_071346982.1\|1298079_1298259_+	hypothetical protein	NA	NA	NA	NA
WP_088612642.1\|1298248_1299076_+\|portal	phage portal protein	S6BFM4	Thermus_phage	3.2e-18	28.5
WP_088612643.1\|1298975_1299776_+	ATP-binding protein	A6XMI1	Bacillus_virus	4.7e-59	44.7
WP_071346981.1\|1300040_1300382_+\|portal	phage portal protein	NA	NA	NA	NA
WP_088612645.1\|1300371_1300575_+	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	3.5e-11	48.5
WP_088612646.1\|1300687_1301197_+	sigma-70 family RNA polymerase sigma factor	A0A0K2CNQ1	Brevibacillus_phage	8.5e-22	43.9
WP_088612647.1\|1301311_1302106_+\|terminase	terminase	A0A0S2MVB6	Bacillus_phage	1.2e-59	49.4
WP_088612648.1\|1302102_1303398_+\|terminase	PBSX family phage terminase large subunit	M4ZRM5	Bacillus_phage	2.0e-147	59.7
WP_088613847.1\|1303446_1304838_+\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	2.3e-138	55.8
WP_013351944.1\|1304857_1305700_+\|portal	phage portal protein	A0A1B1P7E4	Bacillus_phage	5.7e-55	57.6
WP_088612649.1\|1305726_1306662_+\|capsid	phage major capsid protein	A0A1B1P7E3	Bacillus_phage	1.5e-104	62.8
WP_045506703.1\|1306678_1307062_+	DUF3199 family protein	NA	NA	NA	NA
WP_088612650.1\|1307058_1307415_+	DUF3599 family protein	NA	NA	NA	NA
WP_088612651.1\|1307411_1307915_+	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	9.2e-37	41.0
WP_088612652.1\|1307911_1308358_+\|portal	phage portal protein	NA	NA	NA	NA
WP_013351949.1\|1308354_1308564_+	hypothetical protein	NA	NA	NA	NA
WP_088612653.1\|1308563_1309961_+\|tail	phage tail sheath protein	A0A0A7RTT5	Clostridium_phage	1.5e-81	40.8
WP_003154837.1\|1309962_1310406_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	8.4e-26	45.2
WP_003154836.1\|1310480_1310927_+\|portal	phage portal protein	A0A0A7RTY8	Clostridium_phage	1.0e-10	35.8
WP_015239684.1\|1310968_1311121_+	hypothetical protein	NA	NA	NA	NA
WP_088612654.1\|1311108_1316598_+	transglycosylase SLT domain-containing protein	A0A1L2JY60	Aeribacillus_phage	9.4e-42	47.0
WP_071346970.1\|1316590_1317250_+	LysM peptidoglycan-binding domain-containing protein	A0A090DBR9	Clostridium_phage	2.6e-23	34.0
WP_013351954.1\|1317263_1318241_+	hypothetical protein	A0A1L6BY20	Clostridium_phage	3.7e-34	29.8
WP_013351955.1\|1318240_1318507_+	DUF2577 family protein	S6C459	Thermus_phage	2.6e-06	37.5
WP_045506678.1\|1319073_1320120_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	2.3e-69	43.5
WP_088612655.1\|1320103_1320682_+	YmfQ family protein	A0A0A7RTT8	Clostridium_phage	6.3e-13	29.3
WP_013351959.1\|1320678_1320951_+	hypothetical protein	NA	NA	NA	NA
WP_088612656.1\|1320953_1323044_+\|terminase	terminase	A0A1L2K2Q1	Aeribacillus_phage	8.1e-18	29.0
WP_088612657.1\|1323066_1323399_+\|portal	phage portal protein	A0A2H4JCI0	uncultured_Caudovirales_phage	5.5e-14	38.7
WP_014470494.1\|1323398_1323563_+	XkdX family protein	A0A2H4JAA1	uncultured_Caudovirales_phage	1.0e-13	60.4
WP_088612658.1\|1323617_1324415_+\|portal	phage portal protein	NA	NA	NA	NA
WP_088612659.1\|1324468_1324732_+	protein xhlA	A0A2H4JD40	uncultured_Caudovirales_phage	5.2e-23	63.1
WP_013351965.1\|1324745_1325009_+\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	5.2e-23	65.5
WP_088612660.1\|1325022_1325901_+	LysM peptidoglycan-binding domain-containing protein	Q9ZXD7	Bacillus_phage	6.3e-81	60.5

DBSCAN-SWA_5

1880533 : 1886746

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013352354.1\|1880533_1880926_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	1.7e-30	60.0
WP_065521243.1\|1880885_1882988_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	U5PY35	Bacillus_phage	0.0e+00	85.5
WP_013352356.1\|1883005_1883995_+	class 1b ribonucleoside-diphosphate reductase subunit beta	F8WQ21	Bacillus_phage	5.1e-156	83.3
WP_088612847.1\|1884043_1884664_+	hypothetical protein	A0A127AYS1	Bacillus_phage	2.7e-46	47.9
WP_088612848.1\|1884712_1885471_-	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	7.1e-49	48.7
WP_045506012.1\|1885504_1885729_-	hypothetical protein	NA	NA	NA	NA
WP_088612849.1\|1885777_1886746_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	1.0e-52	41.7

DBSCAN-SWA_6

1918126 : 1928412

Bacillus_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065521218.1\|1918126_1918747_+	chitin-binding protein	A0A0K1Y848	Apis_mellifera_filamentous_virus	1.7e-19	36.4
WP_016935991.1\|1918897_1918987_-	YjcZ family sporulation protein	NA	NA	NA	NA
WP_013352404.1\|1919403_1919940_-	hypothetical protein	NA	NA	NA	NA
WP_088612873.1\|1920608_1923026_-	peptidase G2	D6R401	Bacillus_phage	8.5e-221	49.9
WP_013352407.1\|1923311_1923551_+	TM2 domain-containing protein	M4ZS56	Bacillus_phage	4.5e-18	63.0
WP_013352408.1\|1923722_1924157_+	dUTP diphosphatase	A0A1P8CX51	Bacillus_phage	4.6e-69	87.3
WP_088612874.1\|1924486_1925308_+	poly-gamma-glutamate hydrolase family protein	O64134	Bacillus_phage	1.6e-49	42.6
WP_045505921.1\|1925550_1926381_+	prohibitin family protein	A0A172JI70	Bacillus_phage	2.9e-104	72.7
WP_088612875.1\|1926408_1926858_-	YndM family protein	NA	NA	NA	NA
WP_088612876.1\|1927014_1927443_+	hypothetical protein	NA	NA	NA	NA
WP_007611720.1\|1927791_1928412_-	repressor LexA	A0A1B2APZ1	Phage_Wrath	8.5e-16	62.3

DBSCAN-SWA_7

2284474 : 2290727

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013352726.1\|2284474_2285068_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.0e-14	36.6
WP_065522836.1\|2285057_2285813_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.1e-09	25.7
WP_076983148.1\|2286020_2286110_+	YjcZ family sporulation protein	NA	NA	NA	NA
WP_088613059.1\|2286197_2286719_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_013352729.1\|2286784_2287159_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA
WP_088613060.1\|2287275_2287740_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.5e-44	60.7
WP_088613061.1\|2287772_2288969_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.3e-115	54.2
WP_088613062.1\|2288983_2289631_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.7e-39	43.8
WP_013352733.1\|2289611_2290727_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.2e-54	35.7

DBSCAN-SWA_8

3013297 : 3113744

106

Bacillus_phage(36.96%)

tail,integrase,terminase,coat,plate,capsid,protease,portal,holin,head

attL 3057691:3057710|attR 3095011:3095030

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_088613375.1\|3013297_3014329_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	1.3e-37	29.1
WP_088613376.1\|3014493_3014856_-	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	4.0e-18	43.9
WP_088613377.1\|3014930_3015785_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_013353446.1\|3015905_3017126_-	NupC/NupG family nucleoside CNT transporter	B2YG43	Musca_hytrovirus	3.5e-13	22.7
WP_088613378.1\|3017260_3017497_-	YuzB family protein	NA	NA	NA	NA
WP_013353448.1\|3017763_3018831_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_088613379.1\|3018868_3019195_-	YuzD family protein	NA	NA	NA	NA
WP_010329960.1\|3019373_3019610_+	NifU family protein	Q58MC7	Prochlorococcus_phage	2.2e-09	45.6
WP_088613380.1\|3019642_3021625_-	S9 family peptidase	NA	NA	NA	NA
WP_088613381.1\|3021725_3022655_-	homoserine kinase	NA	NA	NA	NA
WP_088613885.1\|3022651_3023710_-	threonine synthase	NA	NA	NA	NA
WP_088613382.1\|3023709_3025011_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_088613383.1\|3025210_3026227_-\|coat	spore coat protein YutH	NA	NA	NA	NA
WP_013353454.1\|3026380_3026881_+	phosphatidylglycerophosphatase A	G3MBC5	Bacillus_virus	5.7e-39	57.0
WP_088613384.1\|3026907_3027678_-	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA
WP_013353456.1\|3027711_3028146_-	DUF86 domain-containing protein	NA	NA	NA	NA
WP_003151928.1\|3028171_3028447_-	YutD family protein	NA	NA	NA	NA
WP_003151923.1\|3028665_3029562_-	lipoyl synthase	NA	NA	NA	NA
WP_013353457.1\|3029765_3030743_+	M23 family metallopeptidase	A0A1J0MFP9	Staphylococcus_phage	7.9e-08	36.2
WP_013353458.1\|3030780_3031539_-	sporulation protein YunB	NA	NA	NA	NA
WP_088613385.1\|3031644_3033039_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_013353460.1\|3033056_3033878_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_013353461.1\|3033897_3034749_-	DUF72 domain-containing protein	NA	NA	NA	NA
WP_013353462.1\|3034775_3035129_-	hypothetical protein	NA	NA	NA	NA
WP_088613386.1\|3035202_3036567_-	allantoinase	NA	NA	NA	NA
WP_088613387.1\|3036747_3038343_+	PucR family transcriptional regulator	NA	NA	NA	NA
WP_013353465.1\|3039479_3039923_-	hypothetical protein	A0A1U9WQP1	Geobacillus_phage	4.0e-28	58.4
WP_088613388.1\|3041033_3042230_-	MFS transporter	NA	NA	NA	NA
WP_088613389.1\|3042352_3043606_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_088613390.1\|3043624_3044866_-	allantoate deiminase	NA	NA	NA	NA
WP_088613391.1\|3045084_3045951_+	ribonuclease	NA	NA	NA	NA
WP_088613392.1\|3045995_3047102_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	Q6GZ03	Mycoplasma_phage	3.3e-18	46.6
WP_151907776.1\|3047255_3047984_+	transcriptional regulator PhoB	NA	NA	NA	NA
WP_088613394.1\|3048008_3048863_-	fructoselysine 6-kinase	NA	NA	NA	NA
WP_088613395.1\|3048876_3049761_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_041481667.1\|3049764_3050643_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_088613886.1\|3050679_3051948_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_088613396.1\|3052021_3053008_-	SIS domain-containing protein	A0A2L2DN46	Acanthamoeba_polyphaga_mimivirus	7.7e-11	25.7
WP_013353481.1\|3053527_3053800_+	DUF1648 domain-containing protein	NA	NA	NA	NA
WP_013353482.1\|3053839_3054214_-	nucleotide excision repair endonuclease	NA	NA	NA	NA
WP_088613397.1\|3054281_3055397_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_088613398.1\|3056203_3056665_+	DUF2691 family protein	NA	NA	NA	NA
3057691:3057710	attL	NA	NA	NA	NA
WP_013353487.1\|3058082_3058445_-	hypothetical protein	NA	NA	NA	NA
WP_013353488.1\|3058460_3058940_-	hypothetical protein	NA	NA	NA	NA
WP_013353489.1\|3059103_3060117_-	N-acetylmuramoyl-L-alanine amidase	A0A1J0MS59	Bacillus_phage	5.4e-185	95.3
WP_014472221.1\|3060165_3060588_-\|holin	holin	D6R405	Bacillus_phage	1.0e-57	87.1
WP_013353491.1\|3060638_3060827_-	XkdX family protein	Q9ZXD9	Bacillus_phage	5.3e-30	96.8
WP_013353492.1\|3060823_3061186_-	hypothetical protein	Q9ZXE0	Bacillus_phage	5.1e-53	89.1
WP_088613399.1\|3061182_3062319_-\|plate	phage baseplate upper protein	D6R402	Bacillus_phage	2.8e-142	73.9
WP_013353494.1\|3062331_3064896_-	peptidase G2	D6R401	Bacillus_phage	2.4e-290	57.6
WP_088613400.1\|3064928_3066647_-	alkaline phosphatase	D6R400	Bacillus_phage	6.5e-223	69.1
WP_088613401.1\|3066659_3067496_-\|tail	phage tail family protein	D6R3Z9	Bacillus_phage	1.4e-109	68.6
WP_017418252.1\|3067510_3071257_-	transglycosylase SLT domain-containing protein	A0A2H4JA91	uncultured_Caudovirales_phage	4.4e-107	64.2
WP_017418253.1\|3071319_3071502_-	hypothetical protein	NA	NA	NA	NA
WP_017418254.1\|3071513_3071876_-	hypothetical protein	NA	NA	NA	NA
WP_017418255.1\|3071933_3072512_-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	J7KKC8	Streptococcus_phage	1.8e-31	41.0
WP_017418256.1\|3072530_3072920_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_017418257.1\|3072916_3073306_-	HK97 gp10 family phage protein	I7A9A4	Enterococcus_phage	2.6e-10	36.7
WP_013353503.1\|3073305_3073632_-\|head	phage head closure protein	NA	NA	NA	NA
WP_014472232.1\|3073621_3073915_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JB77	uncultured_Caudovirales_phage	8.6e-11	39.6
WP_014472233.1\|3073965_3074415_-	hypothetical protein	D6R3Z0	Bacillus_phage	1.6e-11	62.0
WP_014472234.1\|3074442_3075639_-\|capsid	phage major capsid protein	A0A2H4J312	uncultured_Caudovirales_phage	2.2e-76	49.7
WP_047936177.1\|3075687_3076284_-\|head,protease	HK97 family phage prohead protease	A0A1J0MFL1	Staphylococcus_phage	4.7e-48	53.6
WP_047936178.1\|3076276_3077503_-\|portal	phage portal protein	A0A2H4J331	uncultured_Caudovirales_phage	5.5e-67	38.0
WP_088613402.1\|3077507_3077714_-	hypothetical protein	NA	NA	NA	NA
WP_047936182.1\|3077730_3079464_-\|terminase	terminase large subunit	A0A2H4JCI4	uncultured_Caudovirales_phage	3.0e-143	48.0
WP_013353510.1\|3079453_3079939_-\|terminase	phage terminase small subunit P27 family	A0A1J0MG04	Staphylococcus_phage	4.8e-14	36.5
WP_088613403.1\|3080173_3080434_-	hypothetical protein	A0A2I6UHM8	Bacillus_phage	4.8e-13	42.5
WP_013353512.1\|3081194_3081575_-	ArpU family transcriptional regulator	Q9ZXB9	Bacillus_phage	1.0e-43	75.6
WP_088613404.1\|3081571_3082927_-	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	2.2e-178	65.2
WP_052476537.1\|3082868_3083213_-	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	5.9e-19	57.8
WP_088613405.1\|3083482_3085897_-	hypothetical protein	A0A0A7RTG3	Clostridium_phage	1.2e-280	56.6
WP_088613406.1\|3086452_3088399_-	DNA polymerase	S5M5X4	Brevibacillus_phage	8.0e-254	67.4
WP_088613407.1\|3088395_3088938_-	hypothetical protein	Q38587	Bacillus_phage	4.6e-42	97.7
WP_088613408.1\|3088994_3089561_-	DUF2815 family protein	S5MC21	Brevibacillus_phage	3.2e-78	78.0
WP_088613409.1\|3089590_3090769_-	DUF2800 domain-containing protein	S5MUB5	Brevibacillus_phage	4.2e-133	61.1
WP_013353519.1\|3090765_3091161_-	hypothetical protein	NA	NA	NA	NA
WP_013353520.1\|3091173_3091575_-	hypothetical protein	NA	NA	NA	NA
WP_041481670.1\|3091765_3092035_-	hypothetical protein	Q9ZXC9	Bacillus_phage	1.3e-18	47.7
WP_013353523.1\|3092421_3092607_-	helix-turn-helix transcriptional regulator	A0A0M3ULF9	Bacillus_phage	6.8e-14	68.9
WP_088613410.1\|3092875_3093304_+	helix-turn-helix transcriptional regulator	Q5YAA4	Bacillus_phage	9.9e-40	58.2
WP_088613411.1\|3093312_3093735_+	ImmA/IrrE family metallo-endopeptidase	A0A0S2SXM3	Bacillus_phage	8.0e-42	61.6
WP_088613412.1\|3093777_3094935_+\|integrase	site-specific integrase	S5MBZ0	Brevibacillus_phage	4.4e-151	67.5
WP_003151878.1\|3094997_3096395_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
3095011:3095030	attR	NA	NA	NA	NA
WP_003151877.1\|3096414_3096858_-	iron-sulfur cluster assembly scaffold protein SufU	A0A2P1CJL8	Mycobacterium_phage	1.8e-15	39.4
WP_088613413.1\|3096847_3098068_-	cysteine desulfurase SufS	Q2XUY6	environmental_halophage	3.4e-117	48.3
WP_013353527.1\|3098067_3099381_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_003151872.1\|3099398_3100184_-	Fe-S cluster assembly ATPase SufC	W5SAS9	Pithovirus	3.5e-06	22.7
WP_003151857.1\|3100360_3100513_-	hypothetical protein	NA	NA	NA	NA
WP_088030652.1\|3100705_3101092_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_088613414.1\|3101175_3101991_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_065522184.1\|3102004_3102673_-	ABC transporter permease	NA	NA	NA	NA
WP_088613415.1\|3102665_3103691_-	methionine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-32	37.0
WP_013353532.1\|3104013_3104364_-	hypothetical protein	NA	NA	NA	NA
WP_013353533.1\|3104461_3104782_-	thioredoxin family protein	NA	NA	NA	NA
WP_088613416.1\|3104787_3105153_-	hypothetical protein	NA	NA	NA	NA
WP_013353535.1\|3105222_3105459_-	DUF2553 family protein	NA	NA	NA	NA
WP_013353536.1\|3105513_3105897_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_088613417.1\|3105956_3106313_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.1e-20	50.0
WP_088613418.1\|3106426_3108211_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_045511829.1\|3108229_3109405_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_088613419.1\|3109415_3111785_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_013353541.1\|3111975_3112116_+	YuzL family protein	NA	NA	NA	NA
WP_088613420.1\|3112144_3113053_-	proline dehydrogenase	NA	NA	NA	NA
WP_013353543.1\|3113142_3113400_+	hypothetical protein	NA	NA	NA	NA
WP_013353544.1\|3113411_3113744_+\|coat	spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_9

3548357 : 3604347

Bacillus_phage(10.0%)

protease,coat,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065522434.1\|3548357_3550028_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_016937596.1\|3550024_3550453_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_014471164.1\|3550838_3551066_+	hypothetical protein	NA	NA	NA	NA
WP_065522435.1\|3551071_3552466_-	YncE family protein	NA	NA	NA	NA
WP_088613621.1\|3552694_3553840_+	tetratricopeptide repeat protein	A0A1P8CWN8	Bacillus_phage	2.2e-78	43.2
WP_014471166.1\|3553823_3553943_+	PhrC/PhrF family phosphatase-inhibitory pheromone	NA	NA	NA	NA
WP_088613622.1\|3554056_3554929_-	agmatinase	NA	NA	NA	NA
WP_013353957.1\|3554987_3555818_-	spermidine synthase	NA	NA	NA	NA
WP_088613623.1\|3556017_3558090_+	penicillin-binding protein	NA	NA	NA	NA
WP_088613624.1\|3558114_3558546_-	hypothetical protein	NA	NA	NA	NA
WP_013353960.1\|3558689_3559211_-	hypothetical protein	NA	NA	NA	NA
WP_014471167.1\|3559223_3559883_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003151042.1\|3559988_3560177_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_013353962.1\|3560215_3560635_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_045512764.1\|3561014_3562394_+	amino acid permease	NA	NA	NA	NA
WP_014471169.1\|3562458_3562959_-	YwgA family protein	NA	NA	NA	NA
WP_014471170.1\|3562998_3564300_-	HD domain-containing protein	E3T4P8	Cafeteria_roenbergensis_virus	1.0e-23	28.9
WP_003151034.1\|3564461_3564686_-	DUF1450 domain-containing protein	NA	NA	NA	NA
WP_088613625.1\|3564889_3565663_+	RsfA family transcriptional regulator	NA	NA	NA	NA
WP_088613626.1\|3565962_3566238_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_013353968.1\|3566238_3566793_+	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_088613627.1\|3566890_3567811_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	9.0e-38	39.8
WP_013353970.1\|3567807_3568761_+	ABC transporter permease	NA	NA	NA	NA
WP_088613628.1\|3568750_3569587_-	hypothetical protein	NA	NA	NA	NA
WP_013353972.1\|3569577_3570375_-	hypothetical protein	NA	NA	NA	NA
WP_088613629.1\|3570343_3571267_-	hypothetical protein	NA	NA	NA	NA
WP_013353974.1\|3571316_3571496_-	hypothetical protein	NA	NA	NA	NA
WP_013353975.1\|3571650_3572514_-	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_013353976.1\|3572569_3573460_-	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	2.7e-07	40.2
WP_013353977.1\|3573574_3574552_+	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_013353978.1\|3574590_3575562_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_014471181.1\|3575818_3576583_+	heme-dependent peroxidase	NA	NA	NA	NA
WP_014471182.1\|3576701_3577481_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_088613630.1\|3577495_3578695_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_065522451.1\|3578707_3579889_-	MFS transporter	NA	NA	NA	NA
WP_088613631.1\|3579885_3581304_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_088613632.1\|3581320_3582082_-	dihydroanticapsin 7-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.1e-20	30.1
WP_041481683.1\|3582078_3582789_-	cupin domain-containing protein	NA	NA	NA	NA
WP_088613633.1\|3582778_3583393_-	bacilysin biosynthesis protein BacA	NA	NA	NA	NA
WP_088613634.1\|3583554_3584793_-	MFS transporter	NA	NA	NA	NA
WP_088613635.1\|3585013_3586219_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	1.4e-27	25.8
WP_014471189.1\|3586250_3587669_-	amino acid permease	NA	NA	NA	NA
WP_088613636.1\|3587693_3589376_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_013353992.1\|3589447_3590995_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_088613637.1\|3591202_3592489_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_014471192.1\|3592675_3593137_-	hypothetical protein	NA	NA	NA	NA
WP_014471193.1\|3593363_3593819_-\|coat	spore coat protein	NA	NA	NA	NA
WP_088613638.1\|3593815_3594664_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.5e-36	37.3
WP_088613639.1\|3594684_3595632_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.0e-68	43.2
WP_088613640.1\|3595634_3596372_-	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	8.5e-47	42.7
WP_088613641.1\|3596399_3597404_-\|coat	spore coat protein	NA	NA	NA	NA
WP_088613901.1\|3597405_3598146_-\|coat	spore coat protein	NA	NA	NA	NA
WP_088613642.1\|3598138_3599260_-\|coat	spore coat protein	NA	NA	NA	NA
WP_013354003.1\|3599259_3600123_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_088613643.1\|3600123_3601293_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA
WP_088613644.1\|3601315_3602740_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_088613645.1\|3602744_3603515_-	glycosyltransferase family 2 protein	A0A0F7L2F7	uncultured_marine_virus	2.6e-06	31.5
WP_065522465.1\|3603795_3604347_+\|coat	spore coat protein GerQ	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage