CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP028539	Klebsiella pneumoniae strain WCHKP2 plasmid p1_020002, complete sequence	0 crisprs	NA	0
NZ_CP028541	Klebsiella pneumoniae strain WCHKP2 plasmid pKPC2_020002, complete sequence	0 crisprs	RT	3
NZ_CP028540	Klebsiella pneumoniae strain WCHKP2 plasmid p2_020002, complete sequence	0 crisprs	NA	0
NZ_CP028542	Klebsiella pneumoniae strain WCHKP2 chromosome, complete genome	2 crisprs	cas3,DEDDh,WYL,DinG,RT,csa3	15

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1796 : 18519

Escherichia_phage(60.0%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616807.1\|1796_2450_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012602143.1\|2669_3134_+	Plasmid stable inheritance protein	NA	NA	NA	NA
WP_012602142.1\|3130_3235_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|4444_5149_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013188475.1\|5659_6535_+	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
WP_012579081.1\|6614_7538_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.2e-177	99.7
WP_001067855.1\|9288_9993_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|11103_11808_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014839979.1\|11873_12392_+	hypothetical protein	NA	NA	NA	NA
WP_014839980.1\|12396_12813_-	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
WP_001067855.1\|13198_13903_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000957857.1\|14580_14769_-	hypothetical protein	NA	NA	NA	NA
WP_064441864.1\|14860_15397_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.8e-84	100.0
WP_000027057.1\|15579_16440_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_012372818.1\|16609_17365_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
WP_001067855.1\|17814_18519_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

73209 : 117049

Escherichia_phage(34.78%)

integrase,transposase

attL 76398:76412|attR 106435:106449

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|73209_73914_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004199234.1\|75182_76064_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_013213985.1\|76339_77320_-\|transposase	IS481-like element ISKpn27 family transposase	A8RHK4	Spiroplasma_virus	2.9e-10	27.4
76398:76412	attL	NA	NA	NA	NA
WP_014343468.1\|77442_77916_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.3e-76	99.3
WP_001067855.1\|77955_78660_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004199234.1\|79928_80810_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_013213985.1\|81085_82066_-\|transposase	IS481-like element ISKpn27 family transposase	A8RHK4	Spiroplasma_virus	2.9e-10	27.4
WP_014343468.1\|82188_82662_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.3e-76	99.3
WP_001067855.1\|82701_83406_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004199234.1\|84674_85556_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_013213985.1\|85831_86812_-\|transposase	IS481-like element ISKpn27 family transposase	A8RHK4	Spiroplasma_virus	2.9e-10	27.4
WP_014343468.1\|86934_87408_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.3e-76	99.3
WP_001067855.1\|87447_88152_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000204520.1\|89463_90171_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|90167_90404_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277456.1\|90400_90763_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000105636.1\|90780_92475_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001340589.1\|92526_92949_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732292.1\|92984_93260_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294663.1\|93273_93624_-	mercuric transport protein MerT	NA	NA	NA	NA
WP_000429836.1\|93695_94130_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000427619.1\|94208_95213_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000361404.1\|96746_97769_-	helicase UvrD	NA	NA	NA	NA
WP_004206609.1\|97753_99316_-	AAA family ATPase	NA	NA	NA	NA
WP_001044770.1\|99389_99806_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261282.1\|99802_100033_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_015493090.1\|100016_100451_+	hypothetical protein	NA	NA	NA	NA
WP_011977810.1\|100611_101556_+	hypothetical protein	NA	NA	NA	NA
WP_032738650.1\|101634_101985_+	hypothetical protein	NA	NA	NA	NA
WP_013214008.1\|102042_102564_+	hypothetical protein	NA	NA	NA	NA
WP_011977813.1\|102609_102813_+	hypothetical protein	NA	NA	NA	NA
WP_011977814.1\|102842_103847_+	hypothetical protein	NA	NA	NA	NA
WP_013214009.1\|104030_104810_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.4e-52	92.0
WP_013214010.1\|104855_105113_-	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|105890_106757_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
106435:106449	attR	NA	NA	NA	NA
WP_011977818.1\|107866_109072_+	ParA family protein	A0A077SL49	Escherichia_phage	5.3e-163	69.3
WP_086523286.1\|109068_110046_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
WP_013214011.1\|110127_111399_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	63.7
WP_001568036.1\|111398_111830_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_009483812.1\|111988_112240_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|112239_113724_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004152353.1\|113972_114944_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_013214012.1\|114946_115618_+	mediator of plasmid stability	NA	NA	NA	NA
WP_001568040.1\|115680_115911_+	hypothetical protein	NA	NA	NA	NA
WP_001568041.1\|116347_117049_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2

DBSCAN-SWA_3

140504 : 169032

Escherichia_phage(27.78%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|140504_141209_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_008324180.1\|141334_141709_-	hypothetical protein	A0A248SL90	Klebsiella_phage	2.2e-27	62.7
WP_015493069.1\|142334_142694_-	hypothetical protein	NA	NA	NA	NA
WP_008324183.1\|142755_143079_-	hypothetical protein	I3UM57	Rhodobacter_phage	6.0e-13	38.1
WP_008324185.1\|143075_143804_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_008324186.1\|143800_144232_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_015493071.1\|146354_146585_-	DUF905 domain-containing protein	NA	NA	NA	NA
WP_032072906.1\|147562_147823_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	4.1e-12	46.2
WP_015493073.1\|148009_148201_-	hypothetical protein	NA	NA	NA	NA
WP_015493074.1\|148243_148750_-	antirestriction protein ArdA	A0A1I9S7Y0	Rhodococcus_phage	4.8e-09	31.8
WP_015493075.1\|149154_149934_-	hypothetical protein	NA	NA	NA	NA
WP_015493076.1\|149987_150407_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_015493077.1\|150417_150639_-	hypothetical protein	NA	NA	NA	NA
WP_002211749.1\|150638_151316_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.9
WP_015493079.1\|151674_152346_+	Gifsy-2 prophage protein	A0A2H4J5W2	uncultured_Caudovirales_phage	5.1e-83	61.7
WP_015493080.1\|152525_152948_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
WP_015493081.1\|152947_154219_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	6.1e-154	63.0
WP_016479949.1\|154354_155326_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-113	68.9
WP_015493083.1\|155322_156528_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.1e-205	89.2
WP_022652286.1\|156890_157523_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	2.5e-07	31.9
WP_040219232.1\|157576_157777_+	hypothetical protein	NA	NA	NA	NA
WP_015493085.1\|157923_158874_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	6.6e-76	55.6
WP_015493086.1\|158870_159482_-	DUF2913 family protein	NA	NA	NA	NA
WP_015493087.1\|159478_159874_-	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|160387_161368_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_042934582.1\|162019_162577_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|163045_163750_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001011939.1\|163882_164524_-	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001239317.1\|164673_165174_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|165253_165958_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001550559.1\|165991_166483_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|166589_167327_+	recombinase family protein	NA	NA	NA	NA
WP_000743213.1\|167323_167548_+	hypothetical protein	NA	NA	NA	NA
WP_000954592.1\|167669_167846_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_000427619.1\|168027_169032_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP028542

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP028542_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028542_1

1261427-1261504

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCGCCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028542_1

>merge|NZ_CP028542|1|1261427-1261504|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NZ_CP028542|1|1|1261427-1261504|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028542.2\|WP_004151696.1\|1251545_1252829_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP028542.2\|WP_002895283.1\|1249403_1249910_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028542.2\|WP_002895284.1\|1249926_1250850_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225813
NZ_CP028542.2\|WP_002895578.1\|1262203_1263493_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP028542.2\|WP_002895575.1\|1261656_1262133_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP028542.2\|WP_004147672.1\|1259495_1260878_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP028542.2\|WP_004151697.1\|1253085_1254303_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP028542.2\|WP_002895580.1\|1263706_1264747_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP028542.2\|WP_002895420.1\|1257870_1259397_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP028542.2\|WP_004151698.1\|1254299_1255256_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP028542.2\|WP_004152853.1\|1267296_1268019_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP028542.2\|WP_002895655.1\|1268729_1270751_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP028542.2\|WP_004151699.1\|1256185_1257874_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP028542.2\|WP_002895648.1\|1266632_1267355_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP028542.2\|WP_004142100.1\|1265884_1266640_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP028542.2\|WP_004151700.1\|1264743_1265901_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP028542.2\|WP_032419168.1\|1268317_1268497_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028542.2\|WP_085666556.1\|1261123_1261393_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028542.2\|WP_002895652.1\|1268105_1268318_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028542.2\|WP_002895358.1\|1255317_1256043_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961

Protein	Function_ID	Function_description	E-value
NZ_CP028542.2\|WP_004151696.1\|1251545_1252829_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP028542.2\|WP_002895284.1\|1249926_1250850_-\|acyltransferase-family-protein	gnl\|CDD\|225813	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only].	6.63632e-09
NZ_CP028542.2\|WP_002895575.1\|1261656_1262133_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP028542.2\|WP_004147672.1\|1259495_1260878_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP028542.2\|WP_004151697.1\|1253085_1254303_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP028542.2\|WP_002895580.1\|1263706_1264747_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP028542.2\|WP_002895420.1\|1257870_1259397_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP028542.2\|WP_004151698.1\|1254299_1255256_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	8.10638e-178
NZ_CP028542.2\|WP_004152853.1\|1267296_1268019_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
NZ_CP028542.2\|WP_002895655.1\|1268729_1270751_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP028542.2\|WP_004151699.1\|1256185_1257874_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP028542.2\|WP_002895648.1\|1266632_1267355_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP028542.2\|WP_004142100.1\|1265884_1266640_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160
NZ_CP028542.2\|WP_004151700.1\|1264743_1265901_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NZ_CP028542.2\|WP_002895578.1\|1262203_1263493_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP028542.2\|WP_002895358.1\|1255317_1256043_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172

>NZ_CP028542.2|WP_085666556.1|1261123_1261393_-|hypothetical-protein
MAAKHGAAETAGAGGLNIAETFPEGRGSPHGCGLRAVFCKDAASARPEACRDKSKAPRSGDVAGRSPGVQGAAATGRPLCAPCSMRNIT
>NZ_CP028542.2|WP_004147672.1|1259495_1260878_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP028542.2|WP_002895420.1|1257870_1259397_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLTRLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGEWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP028542.2|WP_004151699.1|1256185_1257874_+|urocanate-hydratase
MSQSKYRQLDVRAPRGTTLTAKSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARNWECYDAIVKALKNLESDETLLVQSGKPVGVFKTHENSPRVLIANSNLVPHWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYQGSLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIKKYTAEGRAISIALCGNAAEIVPELVKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP028542.2|WP_002895358.1|1255317_1256043_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP028542.2|WP_004151698.1|1254299_1255256_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIVRAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRVGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRNGKLQAVDLVEFNPLFDIDGQGARAAARLAWQIAHWWR
>NZ_CP028542.2|WP_004151697.1|1253085_1254303_+|imidazolonepropionase
MTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDADGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP028542.2|WP_004151696.1|1251545_1252829_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATIGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP028542.2|WP_002895284.1|1249926_1250850_-|acyltransferase-family-protein
MTAVTFFTIYNTWDRFDYDYHWILGLLTFISTIATPLFFVVAGYLDAQTRHDANWQIGKIKSVVIVFLFWVTVYYVWEPYQRGYLIQPWFIFALIVIYTFHPLIAWLSQRRGLFFAVLLTLLCCSYGYDLLSVIYPDRHLFSLPPQYRLWTWLLFYLTGQLFNDPKVAEWIRNPQVIKGSIIALPFVYLFTWFYERHFFFALFKADRNAFILTGSQIYILIVLLVIAANAVQFKKNREWKEAVLATVSKAMTGVYILHYSVFHLLVMLIPVHSLATKLGVIALTFVLSVLISLAALSSTLLRKVITL
>NZ_CP028542.2|WP_002895283.1|1249403_1249910_+|hypothetical-protein
MRGKSVMLLAGLASLAQANELNLYSVNTGSYVYHLTNNHGQYTENFENHFFSVERKFSADSKYSLLLGTMNNSFNDRCLALGVRRDWYHSGSGWTFKGVYGYTGEFFFDAFEHCGDHGSYKDFKDATGIGFSPYIYHAIQYNFTDYFAVESGIIIPSVFVISIQWSFR
>NZ_CP028542.2|WP_002895575.1|1261656_1262133_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP028542.2|WP_002895578.1|1262203_1263493_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVAGESLRLLESGEWQPQVTAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP028542.2|WP_002895580.1|1263706_1264747_+|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP028542.2|WP_004151700.1|1264743_1265901_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALVDWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGRQRRDILAARIRQFREGMGKVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>NZ_CP028542.2|WP_004142100.1|1265884_1266640_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP028542.2|WP_002895648.1|1266632_1267355_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP028542.2|WP_004152853.1|1267296_1268019_-|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>NZ_CP028542.2|WP_002895652.1|1268105_1268318_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NZ_CP028542.2|WP_032419168.1|1268317_1268497_-|hypothetical-protein
MKLLWQQMTLFLHPLILSNKLIFKIFKEKTPFAPIQPQAAYALACRRFSNSNTQGYPQE
>NZ_CP028542.2|WP_002895655.1|1268729_1270751_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS

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Crispr_ID: NZ_CP028542_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP028542_2

4636748-4636842

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP028542_2

>merge|NZ_CP028542|2|4636748-4636842|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP028542|2|2|4636748-4636842|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP028542.2\|WP_002888329.1\|4642803_4644090_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP028542.2\|WP_002888348.1\|4633841_4634501_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP028542.2\|WP_020805925.1\|4647088_4647292_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028542.2\|WP_002888323.1\|4645905_4646283_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP028542.2\|WP_004151368.1\|4630922_4633829_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP028542.2\|WP_002888349.1\|4628377_4630735_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP028542.2\|WP_002888337.1\|4638598_4639297_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP028542.2\|WP_002888347.1\|4634575_4635115_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP028542.2\|WP_002888368.1\|4624146_4625856_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP028542.2\|WP_004147026.1\|4640400_4642749_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP028542.2\|WP_002888340.1\|4636983_4638609_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP028542.2\|WP_014342872.1\|4635077_4635266_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP028542.2\|WP_002888370.1\|4622963_4623809_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP028542.2\|WP_002888321.1\|4646287_4647136_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP028542.2\|WP_002888327.1\|4644095_4645085_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP028542.2\|WP_002888357.1\|4625866_4627369_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP028542.2\|WP_002888332.1\|4639329_4640157_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP028542.2\|WP_002888324.1\|4645081_4645903_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP028542.2\|WP_002888345.1\|4635294_4636659_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP028542.2\|WP_002888353.1\|4627506_4628202_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181

Protein	Function_ID	Function_description	E-value
NZ_CP028542.2\|WP_002888329.1\|4642803_4644090_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP028542.2\|WP_002888348.1\|4633841_4634501_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP028542.2\|WP_002888323.1\|4645905_4646283_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP028542.2\|WP_002888349.1\|4628377_4630735_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP028542.2\|WP_004151368.1\|4630922_4633829_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP028542.2\|WP_002888337.1\|4638598_4639297_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP028542.2\|WP_002888347.1\|4634575_4635115_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP028542.2\|WP_002888368.1\|4624146_4625856_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP028542.2\|WP_004147026.1\|4640400_4642749_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP028542.2\|WP_002888340.1\|4636983_4638609_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP028542.2\|WP_002888370.1\|4622963_4623809_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP028542.2\|WP_002888321.1\|4646287_4647136_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP028542.2\|WP_002888327.1\|4644095_4645085_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP028542.2\|WP_002888357.1\|4625866_4627369_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP028542.2\|WP_002888332.1\|4639329_4640157_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP028542.2\|WP_002888324.1\|4645081_4645903_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP028542.2\|WP_002888345.1\|4635294_4636659_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP028542.2\|WP_002888353.1\|4627506_4628202_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0

>NZ_CP028542.2|WP_002888345.1|4635294_4636659_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP028542.2|WP_014342872.1|4635077_4635266_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>NZ_CP028542.2|WP_002888347.1|4634575_4635115_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP028542.2|WP_002888348.1|4633841_4634501_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP028542.2|WP_004151368.1|4630922_4633829_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP028542.2|WP_002888349.1|4628377_4630735_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP028542.2|WP_002888353.1|4627506_4628202_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP028542.2|WP_002888357.1|4625866_4627369_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP028542.2|WP_002888368.1|4624146_4625856_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP028542.2|WP_002888370.1|4622963_4623809_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP028542.2|WP_002888340.1|4636983_4638609_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP028542.2|WP_002888337.1|4638598_4639297_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP028542.2|WP_002888332.1|4639329_4640157_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP028542.2|WP_004147026.1|4640400_4642749_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP028542.2|WP_002888329.1|4642803_4644090_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP028542.2|WP_002888327.1|4644095_4645085_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP028542.2|WP_002888324.1|4645081_4645903_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP028542.2|WP_002888323.1|4645905_4646283_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP028542.2|WP_002888321.1|4646287_4647136_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP028542.2|WP_020805925.1|4647088_4647292_-|hypothetical-protein
MFPVAGFVFFLKRSPGRQIAHKRRSGKALAATRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

451769 : 533552

uncultured_Caudovirales_phage(55.0%)

capsid,terminase,transposase,integrase,portal,head,tRNA,tail,protease

attL 469377:469394|attR 485372:485389

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|451769_452717_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|452731_453241_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|453369_454494_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|454465_454939_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|454964_455507_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|455511_456084_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|456087_456906_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|456902_457160_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|457135_457690_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|463485_463707_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|464000_467111_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|467123_468263_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|468641_469292_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
469377:469394	attL	NA	NA	NA	NA
WP_004150971.1\|469567_470794_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|470886_471828_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|472009_472294_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|472304_473084_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_024194847.1\|473207_473402_-	hypothetical protein	NA	NA	NA	NA
WP_106918304.1\|473535_473805_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|473797_473986_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|473978_474293_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|474289_474658_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|474654_475020_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|475019_477155_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|477497_477833_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|477881_478394_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|478657_479824_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|479875_480436_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|480437_481679_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|481675_482011_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|482007_482307_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|482306_482750_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004198610.1\|482876_483068_+	hypothetical protein	NA	NA	NA	NA
WP_000113647.1\|483025_483382_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|483365_485027_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
WP_004150954.1\|485029_485221_+	hypothetical protein	NA	NA	NA	NA
WP_000462905.1\|485374_485671_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
485372:485389	attR	NA	NA	NA	NA
WP_004144972.1\|485695_486661_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_071526683.1\|486818_487013_-	hypothetical protein	NA	NA	NA	NA
WP_002918745.1\|487018_487900_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_002918742.1\|487911_489363_-	sodium/pantothenate symporter	NA	NA	NA	NA
WP_002918740.1\|489352_489595_-	YhdT family protein	NA	NA	NA	NA
WP_002918738.1\|489705_491055_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_002918736.1\|491065_491533_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_002918732.1\|491555_492008_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_002918689.1\|492231_492840_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_002918688.1\|492839_493841_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_002918687.1\|494069_494261_+	hypothetical protein	NA	NA	NA	NA
WP_002918686.1\|494340_496281_+	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_004149975.1\|496402_496609_-	hypothetical protein	NA	NA	NA	NA
WP_002918653.1\|496586_497630_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_004149974.1\|497700_498693_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_002918648.1\|498692_499181_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_002918646.1\|499188_499770_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002918644.1\|499772_501242_+	ribonuclease G	NA	NA	NA	NA
WP_004150952.1\|501279_505077_+	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_002918642.1\|505165_506611_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_002918641.1\|506646_507576_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002918640.1\|507707_507911_+	AaeX family protein	NA	NA	NA	NA
WP_002918639.1\|507918_508851_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002918632.1\|508856_510824_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002918629.1\|510903_511179_+	hypothetical protein	NA	NA	NA	NA
WP_002918627.1\|511229_511496_-	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918626.1\|511594_511858_-	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918625.1\|512233_512704_-	transcriptional regulator ArgR	NA	NA	NA	NA
WP_002918570.1\|513118_514057_+	malate dehydrogenase	NA	NA	NA	NA
WP_002918568.1\|514193_515252_-	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA
WP_062954970.1\|515339_516707_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
WP_002918565.1\|516880_517279_-	DUF1043 family protein	NA	NA	NA	NA
WP_004144945.1\|517469_518597_+	cell division protein ZapE	NA	NA	NA	NA
WP_002918559.1\|518862_519291_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_000829818.1\|519306_519699_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_004188421.1\|519808_520012_-	hypothetical protein	NA	NA	NA	NA
WP_002918467.1\|520010_520649_+	stringent starvation protein A	NA	NA	NA	NA
WP_002918465.1\|520652_521147_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8
WP_002918463.1\|521271_521976_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_002918461.1\|522030_523449_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002918458.1\|523458_527919_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_002918455.1\|528592_529525_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	3.4e-16	33.8
WP_002918453.1\|529576_530860_-	MFS transporter	NA	NA	NA	NA
WP_002918451.1\|530945_531962_-	Zn-dependent oxidoreductase	NA	NA	NA	NA
WP_085955245.1\|532359_533552_-\|transposase	IS3-like element ISKpn18 family transposase	U5P429	Shigella_phage	3.5e-50	43.5

DBSCAN-SWA_2

691564 : 703217

Enterobacteria_phage(70.0%)

integrase

attL 679698:679712|attR 702754:702768

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
679698:679712	attL	NA	NA	NA	NA
WP_002889890.1\|691564_693898_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
WP_002889897.1\|693909_694230_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889911.1\|694226_694454_-	hypothetical protein	NA	NA	NA	NA
WP_024940872.1\|694450_695008_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889915.1\|695004_695271_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_062956184.1\|695812_696550_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.9e-70	59.4
WP_004152203.1\|696546_696792_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152202.1\|696809_697376_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152979.1\|697943_698369_-	hypothetical protein	NA	NA	NA	NA
WP_004152029.1\|698368_699319_-	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_002889938.1\|699306_700497_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_002889940.1\|700849_702103_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_004144574.1\|702113_703217_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
702754:702768	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1355000 : 1393536

Salmonella_phage(82.5%)

transposase,terminase,capsid,integrase,lysis,portal,head,tail,plate

attL 1354908:1354926|attR 1393608:1393626

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1354908:1354926	attL	NA	NA	NA	NA
WP_004151720.1\|1355000_1356053_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0
WP_009483812.1\|1356220_1356472_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1356471_1357956_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004150866.1\|1358054_1358999_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|1359010_1359889_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_000188448.1\|1360034_1360256_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|1360288_1360798_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956179.1\|1360805_1361006_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000963473.1\|1360969_1361311_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_004150864.1\|1361378_1361612_+	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000752622.1\|1361611_1361839_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150863.1\|1361835_1362693_+	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_004150862.1\|1362689_1365104_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001154434.1\|1365257_1365446_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001316229.1\|1365384_1365690_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_000700647.1\|1365804_1366482_+	hypothetical protein	NA	NA	NA	NA
WP_100723154.1\|1366468_1366591_+	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|1366629_1367610_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004199124.1\|1367957_1369700_+	AIPR family protein	NA	NA	NA	NA
WP_002895959.1\|1369761_1370787_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004150858.1\|1370786_1372553_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895967.1\|1372695_1373529_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_002895972.1\|1373545_1374604_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_000059191.1\|1374607_1375258_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002896151.1\|1375353_1375818_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_002896155.1\|1375817_1376021_+\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896158.1\|1376024_1376240_+	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896161.1\|1376220_1376730_+	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896163.1\|1376734_1377118_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896168.1\|1377114_1377543_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896172.1\|1377638_1378070_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896175.1\|1378062_1378509_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_004150857.1\|1378505_1379198_-	hypothetical protein	NA	NA	NA	NA
WP_002896177.1\|1379292_1379865_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_032441567.1\|1379861_1380224_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.9e-48	83.9
WP_002896182.1\|1380210_1381119_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_004150856.1\|1381111_1381711_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_004152882.1\|1381712_1384664_+	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_002896186.1\|1384667_1385399_+	hypothetical protein	NA	NA	NA	NA
WP_002896188.1\|1385395_1385599_+	hypothetical protein	NA	NA	NA	NA
WP_002896191.1\|1385628_1386705_+\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896193.1\|1386843_1388016_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896201.1\|1388025_1388541_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896204.1\|1388593_1388893_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896220.1\|1388907_1389027_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896222.1\|1389019_1391647_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896224.1\|1391643_1392129_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896225.1\|1392125_1393226_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_000972391.1\|1393317_1393536_+	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
1393608:1393626	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1427952 : 1437416

Dickeya_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002896440.1\|1427952_1429068_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004150848.1\|1429064_1431005_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_071528213.1\|1430944_1431127_+	hypothetical protein	NA	NA	NA	NA
WP_002896516.1\|1431081_1431303_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|1431628_1431946_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|1431976_1434256_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|1434376_1434595_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002898014.1\|1434948_1435650_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004150847.1\|1435694_1437416_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_5

1518781 : 1590079

Enterobacteria_phage(38.71%)

capsid,terminase,integrase,portal,head,tail,plate,protease

attL 1557376:1557396|attR 1591900:1591920

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898401.1\|1518781_1520539_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_002898404.1\|1520724_1521177_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_062954987.1\|1521308_1522379_-	porin OmpA	NA	NA	NA	NA
WP_002898418.1\|1522731_1523241_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_071531182.1\|1523259_1523499_-	hypothetical protein	NA	NA	NA	NA
WP_004150836.1\|1523589_1524186_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_002898422.1\|1524199_1526335_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_002898425.1\|1526352_1526799_-	YccF domain-containing protein	NA	NA	NA	NA
WP_002898429.1\|1526923_1528978_+	DNA helicase IV	A7KV33	Bacillus_phage	1.8e-14	26.0
WP_077273871.1\|1528989_1529448_-	methylglyoxal synthase	NA	NA	NA	NA
WP_002898434.1\|1529602_1530016_+	CoA-binding protein	NA	NA	NA	NA
WP_002898441.1\|1530045_1530363_-	heat shock protein HspQ	NA	NA	NA	NA
WP_004141630.1\|1530422_1531625_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_002898447.1\|1531815_1532370_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_002898450.1\|1532387_1533176_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004150835.1\|1533224_1533506_+	acylphosphatase	NA	NA	NA	NA
WP_002898457.1\|1533502_1533832_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_002898458.1\|1533920_1534580_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	3.2e-37	46.6
WP_004150834.1\|1534849_1536502_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002898466.1\|1536858_1537479_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004176625.1\|1537457_1537745_-	hypothetical protein	NA	NA	NA	NA
WP_002898472.1\|1537809_1537998_+	hypothetical protein	NA	NA	NA	NA
WP_002898475.1\|1538167_1539133_-	oxidoreductase	NA	NA	NA	NA
WP_004150833.1\|1539190_1540639_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_002898571.1\|1540657_1541782_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_002898574.1\|1541818_1543426_-	BCCT family transporter	NA	NA	NA	NA
WP_002898577.1\|1543930_1545016_-	tartrate dehydrogenase	NA	NA	NA	NA
WP_002898582.1\|1545119_1546061_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_062954981.1\|1546057_1547338_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_004150832.1\|1547340_1548828_-	aldehyde dehydrogenase PuuC	NA	NA	NA	NA
WP_002898590.1\|1549148_1549706_-	HTH-type transcriptional regulator PuuR	NA	NA	NA	NA
WP_002898593.1\|1549731_1550496_-	gamma-glutamyl-gamma-aminobutyrate hydrolase	NA	NA	NA	NA
WP_002898595.1\|1550709_1552131_+	glutamine synthetase	NA	NA	NA	NA
WP_004199537.1\|1552303_1552495_+	hypothetical protein	NA	NA	NA	NA
WP_002898598.1\|1552484_1553876_+	APC family permease	NA	NA	NA	NA
WP_002898600.1\|1553994_1554117_-	small membrane protein	NA	NA	NA	NA
WP_002898602.1\|1554373_1554595_+	hypothetical protein	NA	NA	NA	NA
WP_004150831.1\|1554615_1555404_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002898606.1\|1555519_1555969_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002898698.1\|1556121_1557369_+	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
1557376:1557396	attL	NA	NA	NA	NA
WP_072353947.1\|1557465_1558473_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	7.6e-99	52.1
WP_004201485.1\|1558560_1558863_-	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	2.6e-26	61.0
WP_023328159.1\|1558957_1559290_+	hypothetical protein	NA	NA	NA	NA
WP_071561575.1\|1559481_1559679_+	hypothetical protein	NA	NA	NA	NA
WP_004187203.1\|1559695_1560082_+	hypothetical protein	NA	NA	NA	NA
WP_004187204.1\|1560097_1560370_+	hypothetical protein	NA	NA	NA	NA
WP_046624145.1\|1560437_1560662_+	hypothetical protein	NA	NA	NA	NA
WP_046624144.1\|1560658_1561237_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	2.7e-32	39.5
WP_072353948.1\|1561245_1562214_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	3.1e-73	49.1
WP_072353949.1\|1562515_1563532_+	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	2.4e-92	54.8
WP_072353950.1\|1563524_1566119_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	1.1e-192	51.7
WP_072353951.1\|1566290_1566698_+	hypothetical protein	NA	NA	NA	NA
WP_072353968.1\|1566970_1567285_+	hypothetical protein	NA	NA	NA	NA
WP_077273872.1\|1567692_1568727_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.0e-139	68.6
WP_060528038.1\|1568747_1570469_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	4.3e-227	66.5
WP_072353953.1\|1570629_1571463_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	6.5e-96	65.3
WP_060528036.1\|1571486_1572536_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	2.3e-106	53.9
WP_072353954.1\|1572582_1573443_+\|terminase	terminase	B9A7B6	Serratia_phage	1.0e-83	68.4
WP_032705909.1\|1573545_1574043_+\|head	head completion/stabilization protein	B9A7B7	Serratia_phage	2.2e-59	69.7
WP_004187236.1\|1574042_1574243_+\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	3.0e-15	64.6
WP_004187237.1\|1574233_1574515_+	hypothetical protein	NA	NA	NA	NA
WP_072353955.1\|1574511_1575063_+	lysozyme	Q1I0Z1	Pasteurella_virus	6.8e-33	42.5
WP_072353969.1\|1575339_1575603_+	peptidase	NA	NA	NA	NA
WP_004187249.1\|1575599_1576058_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	3.1e-31	46.8
WP_072353956.1\|1576054_1576696_+	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	1.4e-45	49.8
WP_072353957.1\|1576695_1577280_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	8.7e-63	61.4
WP_004187254.1\|1577276_1577645_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	2.3e-29	57.4
WP_040209819.1\|1577631_1578531_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	6.2e-92	62.2
WP_072353958.1\|1578523_1579126_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.8e-42	44.8
WP_072353959.1\|1579127_1581392_+	hypothetical protein	B5TAB2	Burkholderia_phage	5.7e-102	39.7
WP_064144972.1\|1581397_1582141_+	hypothetical protein	NA	NA	NA	NA
WP_072353960.1\|1582152_1583229_+\|tail	phage tail protein	Q37842	Escherichia_phage	2.3e-32	48.3
WP_072353961.1\|1583326_1583815_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	2.9e-51	59.9
WP_072353962.1\|1583826_1586562_-\|tail	phage tail tape measure protein	B9A7B3	Serratia_phage	2.0e-242	80.6
WP_050554917.1\|1586551_1586704_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.5e-11	71.4
WP_072353963.1\|1586724_1587024_-\|tail	phage tail protein	B9A7B2	Serratia_phage	2.9e-30	72.7
WP_004187274.1\|1587075_1587591_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.6e-63	70.0
WP_072353964.1\|1587591_1588773_-\|tail	phage tail protein	A0A0A7NV69	Enterobacteria_phage	8.0e-156	69.4
WP_077273873.1\|1588924_1590079_+	phage late control D family protein	B9A7A9	Serratia_phage	6.6e-171	77.2
1591900:1591920	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1699654 : 1787533

Klebsiella_phage(45.45%)

terminase,capsid,integrase,lysis,portal,head,tRNA,tail

attL 1695952:1695966|attR 1754072:1754086

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1695952:1695966	attL	NA	NA	NA	NA
WP_004150803.1\|1699654_1700761_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004150802.1\|1700817_1701276_-	NUDIX hydrolase	NA	NA	NA	NA
WP_004150801.1\|1701292_1701943_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004150800.1\|1702183_1703434_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_032418030.1\|1703551_1704679_-\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.4e-119	58.4
WP_012542206.1\|1704659_1704905_-	excisionase	NA	NA	NA	NA
WP_062954978.1\|1704957_1707096_-	exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	5.6e-99	42.7
WP_014228879.1\|1707237_1707582_-	transcriptional regulator	NA	NA	NA	NA
WP_023279538.1\|1707624_1707819_-	DUF1482 family protein	NA	NA	NA	NA
WP_099143961.1\|1707828_1708047_-	hypothetical protein	NA	NA	NA	NA
WP_040234937.1\|1708209_1708524_+	hypothetical protein	NA	NA	NA	NA
WP_077257742.1\|1708845_1709283_-	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.3e-39	62.2
WP_071561166.1\|1709371_1709596_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.3e-19	62.5
WP_046622349.1\|1709598_1710153_+	hypothetical protein	NA	NA	NA	NA
WP_077265602.1\|1710212_1711217_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.0e-31	40.0
WP_047667474.1\|1711209_1711674_+	replication protein	A0A0U2JGJ0	Escherichia_phage	4.1e-63	72.2
WP_032443841.1\|1711687_1712128_+	hypothetical protein	NA	NA	NA	NA
WP_062954977.1\|1712476_1713868_-	hypothetical protein	NA	NA	NA	NA
WP_062954989.1\|1713956_1714826_-	hypothetical protein	NA	NA	NA	NA
WP_062954976.1\|1715177_1715891_+	hypothetical protein	NA	NA	NA	NA
WP_062954975.1\|1716064_1717426_+	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA
WP_009483812.1\|1718015_1718267_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1718266_1719751_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_025368263.1\|1719829_1720063_+	DinI family protein	K7PM44	Enterobacteria_phage	3.7e-25	71.1
WP_077255782.1\|1720074_1720365_+	hypothetical protein	H6WRY6	Salmonella_phage	8.0e-17	56.9
WP_025861428.1\|1720405_1720798_+	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_017898980.1\|1720794_1720998_+	hypothetical protein	NA	NA	NA	NA
WP_062955112.1\|1720997_1722029_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-96	49.6
WP_025861432.1\|1722045_1722648_+	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-76	68.6
WP_016160648.1\|1724899_1725115_+\|lysis	phage S lysis protein	A5LH82	Enterobacteria_phage	2.7e-30	88.7
WP_032432826.1\|1725114_1725612_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	84.6
WP_016160650.1\|1725608_1725959_+	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_049115059.1\|1726908_1727346_+	hypothetical protein	NA	NA	NA	NA
WP_032749552.1\|1727384_1727609_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|1727935_1728298_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_023297386.1\|1728249_1728573_+	hypothetical protein	NA	NA	NA	NA
WP_014907818.1\|1728569_1729001_+	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.6
WP_012542168.1\|1729249_1729684_+\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_021462603.1\|1729683_1731405_+\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.5e-190	57.4
WP_017898992.1\|1731398_1731578_+	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_023279520.1\|1731577_1732837_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.8e-222	89.8
WP_014907815.1\|1732873_1733794_+	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
WP_023328094.1\|1733871_1735158_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	9.8e-216	89.0
WP_049010370.1\|1735216_1735477_+	hypothetical protein	Q6UAX5	Klebsiella_phage	7.4e-22	60.5
WP_020317538.1\|1735457_1735775_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_023328092.1\|1735771_1736110_+\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	2.8e-53	90.2
WP_017880258.1\|1736090_1736480_+	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_023328091.1\|1736476_1736878_+	hypothetical protein	Q6UAX1	Klebsiella_phage	2.3e-62	94.0
WP_023328090.1\|1736909_1737371_+	hypothetical protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_014228914.1\|1737428_1737794_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_071836352.1\|1737808_1738027_+	hypothetical protein	Q6UAW9	Klebsiella_phage	5.4e-34	90.5
WP_023328089.1\|1738026_1741362_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.3
WP_023328088.1\|1741361_1741700_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-57	88.4
WP_023328087.1\|1741696_1742452_+\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.5
WP_047666389.1\|1742453_1743164_+	peptidase P60	Q6UAW4	Klebsiella_phage	1.9e-136	90.3
WP_047666390.1\|1743205_1743628_+	hypothetical protein	J9Q806	Salmonella_phage	5.9e-29	50.0
WP_023328085.1\|1743654_1744248_+\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	76.6
WP_062955111.1\|1744310_1757015_+	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.1
1754072:1754086	attR	NA	NA	NA	NA
WP_023328083.1\|1757083_1758580_+\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.4e-125	63.7
WP_004892953.1\|1758734_1758887_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_004150799.1\|1759159_1759873_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004150798.1\|1759869_1760262_-	amino acid-binding protein	NA	NA	NA	NA
WP_004150797.1\|1760254_1760578_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004140530.1\|1761014_1761242_-	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004140529.1\|1761354_1762548_-	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004150795.1\|1763169_1763355_+	general stress protein	NA	NA	NA	NA
WP_004150794.1\|1763445_1763940_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004140514.1\|1763966_1764473_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004140512.1\|1764489_1765377_+	manganese catalase family protein	NA	NA	NA	NA
WP_004150793.1\|1765432_1766839_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140509.1\|1766835_1767846_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004140506.1\|1767961_1768159_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|1768725_1769358_+	DNA-binding protein	NA	NA	NA	NA
WP_004140501.1\|1769397_1769577_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|1769974_1770661_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004140497.1\|1770971_1772480_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150788.1\|1772600_1773491_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004150787.1\|1773497_1775282_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150785.1\|1775355_1776564_-	HD domain-containing protein	NA	NA	NA	NA
WP_004150784.1\|1776866_1777910_+	type II asparaginase	NA	NA	NA	NA
WP_020956815.1\|1778164_1778356_-	hypothetical protein	NA	NA	NA	NA
WP_004148038.1\|1778571_1779486_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150783.1\|1779575_1780214_+	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004140489.1\|1780344_1780608_+	DUF2534 family protein	NA	NA	NA	NA
WP_004140488.1\|1780667_1780793_-	hypothetical protein	NA	NA	NA	NA
WP_099119317.1\|1780910_1780985_-	protein YoaJ	NA	NA	NA	NA
WP_004150782.1\|1780984_1781086_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_004150781.1\|1781143_1782157_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.0
WP_004150780.1\|1782457_1782697_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004150779.1\|1782686_1783043_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004150778.1\|1783029_1783539_-	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004140471.1\|1783684_1784377_+	CTP synthase	NA	NA	NA	NA
WP_004150777.1\|1784408_1785593_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_002901073.1\|1785694_1786486_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002901080.1\|1786469_1786916_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901088.1\|1787032_1787533_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_7

1915205 : 1928117

Enterobacteria_phage(50.0%)

integrase

attL 1907183:1907198|attR 1930799:1930814

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1907183:1907198	attL	NA	NA	NA	NA
WP_004140269.1\|1915205_1916015_-	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
WP_004140266.1\|1916016_1917009_-	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004151901.1\|1917008_1917899_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004153574.1\|1918075_1919263_+\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	1.1e-120	52.4
WP_004190725.1\|1919159_1919474_-	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_004151899.1\|1919470_1920133_-	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004151898.1\|1920129_1920558_-	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004201102.1\|1920554_1921235_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004201103.1\|1921520_1922366_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_004201105.1\|1922381_1922666_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004135674.1\|1922754_1922949_-	hypothetical protein	NA	NA	NA	NA
WP_004201108.1\|1923377_1923581_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004201109.1\|1923662_1924739_-	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_019405077.1\|1924884_1925004_-	hypothetical protein	NA	NA	NA	NA
WP_004201113.1\|1925026_1925725_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_004201115.1\|1925836_1926064_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_001548453.1\|1926104_1926326_+	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201117.1\|1926411_1927272_+	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_004201118.1\|1927268_1928117_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
1930799:1930814	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1931250 : 1946846

Enterobacteria_phage(26.67%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004218531.1\|1931250_1931718_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
WP_004243010.1\|1931698_1931866_+	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218532.1\|1931862_1932531_+	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004218533.1\|1932523_1933162_+	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218534.1\|1933158_1933299_+	YlcG family protein	NA	NA	NA	NA
WP_004232548.1\|1933298_1933988_+	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218567.1\|1934625_1934937_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.8e-49	100.0
WP_004218565.1\|1934933_1935473_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_001067855.1\|1935613_1936318_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001261740.1\|1937299_1938091_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|1938254_1938602_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001067855.1\|1939217_1939922_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004152776.1\|1940514_1940937_+	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_009483812.1\|1941583_1941835_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1941834_1943319_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_002901812.1\|1943398_1943818_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_002901813.1\|1943819_1945085_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_071531199.1\|1945160_1945988_-	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901815.1\|1946174_1946846_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6

DBSCAN-SWA_9

1979779 : 2018245

uncultured_Caudovirales_phage(34.04%)

terminase,integrase

attL 1977860:1977874|attR 1986800:1986814

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1977860:1977874	attL	NA	NA	NA	NA
WP_004152144.1\|1979779_1980541_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5
WP_004152145.1\|1980757_1982290_+	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_016197745.1\|1982488_1983037_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_004152147.1\|1983233_1984415_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_004152148.1\|1984395_1984638_-	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152149.1\|1984816_1985296_-	hypothetical protein	NA	NA	NA	NA
WP_004152150.1\|1985292_1985505_-	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_004152151.1\|1985501_1985726_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004154298.1\|1985715_1986426_-	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152153.1\|1986431_1986950_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
1986800:1986814	attR	NA	NA	NA	NA
WP_004152154.1\|1987054_1987882_-	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152155.1\|1987878_1988073_-	hypothetical protein	NA	NA	NA	NA
WP_004152156.1\|1988069_1988495_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152157.1\|1988681_1988936_-	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004152158.1\|1988928_1989294_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152159.1\|1989463_1989652_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152160.1\|1989644_1989959_-	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152161.1\|1990129_1990798_-	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152162.1\|1990895_1991117_+	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152163.1\|1991091_1991385_+	hypothetical protein	A0A286S2B5	Klebsiella_phage	2.8e-38	97.6
WP_004198228.1\|1991693_1993352_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004198233.1\|1993353_1994316_+	zinc-binding domain of primase-helicase family protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198239.1\|1994312_1994789_+	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004152167.1\|1994785_1995568_+	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004146526.1\|1995973_1996222_+	hypothetical protein	NA	NA	NA	NA
WP_004152169.1\|1996224_1996755_+	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004153952.1\|1996751_1997141_+	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152170.1\|1997375_1997696_+	hypothetical protein	NA	NA	NA	NA
WP_004152171.1\|1997797_1998550_+	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-12	66.0
WP_004152172.1\|1998500_1999901_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004152173.1\|2000138_2001590_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152174.1\|2001645_2002194_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004199270.1\|2002245_2003448_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_000528476.1\|2003451_2003946_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_001132269.1\|2003957_2004899_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000725700.1\|2004938_2005220_+	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|2005188_2005608_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000834982.1\|2005604_2006111_+	hypothetical protein	NA	NA	NA	NA
WP_001116156.1\|2006110_2006497_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_004152176.1\|2006591_2007032_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_004152177.1\|2007035_2008181_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004199809.1\|2008191_2008632_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
WP_004152564.1\|2008635_2009061_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004152565.1\|2009096_2009249_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152566.1\|2009238_2011242_+	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152567.1\|2011241_2011841_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004152568.1\|2011841_2012144_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	55.2
WP_004152569.1\|2012146_2013169_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004152570.1\|2013168_2013510_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004173705.1\|2013562_2013748_-	hypothetical protein	NA	NA	NA	NA
WP_004152571.1\|2013784_2014351_+	hypothetical protein	NA	NA	NA	NA
WP_004152572.1\|2014404_2015058_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152573.1\|2015059_2015413_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152574.1\|2015412_2016609_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152575.1\|2016605_2017379_+	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152576.1\|2017378_2018245_+	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5

DBSCAN-SWA_10

2235883 : 2246770

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|2235883_2236504_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_004151609.1\|2236496_2237762_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_004151610.1\|2237773_2238676_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_002210513.1\|2238936_2239698_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004176269.1\|2239718_2240579_-	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002904006.1\|2240876_2241137_+	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_001620097.1\|2241223_2242312_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004151612.1\|2242342_2243608_-	MFS transporter	NA	NA	NA	NA
WP_004151613.1\|2243662_2246770_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_11

3231768 : 3243443

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000019473.1\|3231768_3232749_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_072353990.1\|3232789_3233701_-	acyltransferase	NA	NA	NA	NA
WP_072353991.1\|3234063_3235230_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	9.1e-112	54.7
WP_039819508.1\|3235409_3235964_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.9e-52	58.2
WP_004175259.1\|3235978_3236869_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_023278825.1\|3236900_3237770_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-110	66.7
WP_039819536.1\|3237783_3238848_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.8e-105	54.7
WP_039819506.1\|3239002_3240373_-	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	6.4e-32	25.9
WP_004180506.1\|3240394_3241810_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
WP_000043543.1\|3242036_3243443_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7

DBSCAN-SWA_12

3286788 : 3293693

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072353997.1\|3286788_3288267_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.9e-29	28.3
WP_004175198.1\|3288263_3288986_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_004144192.1\|3289304_3290666_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_002912636.1\|3290911_3291805_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004180550.1\|3292045_3292819_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
WP_072353998.1\|3292829_3293693_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-10	27.5

DBSCAN-SWA_13

3597090 : 3678781

Salmonella_phage(36.21%)

transposase,terminase,integrase,protease,tRNA,tail,holin

attL 3602732:3602749|attR 3677770:3677787

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152006.1\|3597090_3599094_-\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_002913800.1\|3599103_3599979_-	neutral zinc metallopeptidase	NA	NA	NA	NA
WP_002913801.1\|3600098_3600812_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A127KMU1	Cyanophage	1.1e-38	35.7
WP_002913802.1\|3601027_3602062_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_002913803.1\|3602078_3602957_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
3602732:3602749	attL	NA	NA	NA	NA
WP_004145648.1\|3603044_3603677_+	glycine cleavage system transcriptional repressor	NA	NA	NA	NA
WP_002913805.1\|3603680_3604151_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002913806.1\|3604212_3605274_-	AI-2E family transporter	NA	NA	NA	NA
WP_002913807.1\|3605496_3606960_+\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
WP_002913810.1\|3606969_3607329_+	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_002913812.1\|3607456_3608368_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
WP_020947395.1\|3608364_3609066_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913824.1\|3609164_3610451_-	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_002913827.1\|3610546_3611173_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002913829.1\|3611390_3612824_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002913833.1\|3612833_3613727_-	ROK family protein	NA	NA	NA	NA
WP_002913836.1\|3613990_3615028_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
WP_004152007.1\|3615024_3615666_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.2e-28	41.1
WP_002913838.1\|3615846_3617907_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_002913839.1\|3617910_3619443_+	exopolyphosphatase	NA	NA	NA	NA
WP_002913841.1\|3619496_3621725_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_002913843.1\|3622077_3622269_+	DUF2633 family protein	G9L6F2	Escherichia_phage	3.3e-19	79.3
WP_002913846.1\|3622365_3623253_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002913847.1\|3623350_3624583_+	MFS transporter	NA	NA	NA	NA
WP_004162150.1\|3624876_3626055_+	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_004152009.1\|3626038_3627907_+	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_062955008.1\|3628093_3628594_-	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.3e-59	76.9
WP_062955009.1\|3628590_3629220_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.8e-90	76.9
WP_023339240.1\|3629209_3629515_-\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	81.4
WP_062955010.1\|3629501_3629906_-	hypothetical protein	T1SA79	Salmonella_phage	8.7e-54	81.1
WP_077265603.1\|3629992_3631309_-	right-handed parallel beta-helix repeat-containing protein	A0A0K2FI18	Enterobacter_phage	2.3e-34	32.3
WP_072354001.1\|3631386_3631527_+	hypothetical protein	NA	NA	NA	NA
WP_000608644.1\|3632417_3633680_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000019445.1\|3634548_3635529_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_032188295.1\|3635567_3635654_-	hypothetical protein	NA	NA	NA	NA
WP_062956176.1\|3635642_3636776_+	hypothetical protein	NA	NA	NA	NA
WP_062955131.1\|3636816_3637080_-	hypothetical protein	NA	NA	NA	NA
WP_062955133.1\|3639907_3640204_+	hypothetical protein	T1SA06	Salmonella_phage	6.9e-24	63.9
WP_071787028.1\|3640302_3640455_+	transmembrane anchored protein	G9L6D9	Escherichia_phage	2.5e-14	83.7
WP_062955134.1\|3640489_3640684_-	hypothetical protein	Q858F7	Salmonella_phage	6.5e-15	67.2
WP_062955135.1\|3640680_3643437_-	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	95.4
WP_062955136.1\|3643436_3645347_-	hypothetical protein	Q858F9	Salmonella_phage	5.4e-287	82.7
WP_062955137.1\|3645346_3647881_-	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	84.1
WP_032447858.1\|3647891_3648431_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.0e-71	80.0
WP_004152438.1\|3648430_3648895_-	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
WP_062955138.1\|3648894_3651372_-	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.4
WP_062955139.1\|3651371_3651977_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	4.0e-87	77.0
WP_004152441.1\|3651976_3652300_-	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
WP_062955141.1\|3652350_3652692_-	hypothetical protein	G9L6C7	Escherichia_phage	2.4e-36	70.8
WP_020953461.1\|3652702_3653140_-	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
WP_004200546.1\|3653193_3654180_-	hypothetical protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
WP_032441397.1\|3654194_3654875_-	peptidase	G9L6C4	Escherichia_phage	6.1e-76	84.0
WP_004152446.1\|3654877_3655174_-	hypothetical protein	T1SBI9	Salmonella_phage	1.2e-33	70.4
WP_032441398.1\|3655170_3656853_-\|tail	tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	1.5e-264	84.4
WP_004141368.1\|3656867_3657074_-	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_072354015.1\|3657535_3657778_-	hypothetical protein	NA	NA	NA	NA
WP_004200550.1\|3657827_3658199_+	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.7e-59	91.9
WP_062955142.1\|3658242_3659718_-	hypothetical protein	Q858H3	Salmonella_phage	6.4e-280	93.1
WP_032441400.1\|3659714_3660299_-\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.2e-90	88.6
WP_032418540.1\|3660376_3660634_-	hypothetical protein	NA	NA	NA	NA
WP_009483812.1\|3660786_3661038_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|3661037_3662522_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_023339258.1\|3662618_3662957_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.8e-44	80.0
WP_032441458.1\|3662949_3663153_-	hypothetical protein	NA	NA	NA	NA
WP_050491799.1\|3663152_3663773_-	hypothetical protein	Q1MVF7	Enterobacteria_phage	1.0e-29	40.7
WP_029602865.1\|3663769_3664063_-	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
WP_072200041.1\|3664062_3664530_-	hypothetical protein	A0A2R2Z312	Escherichia_phage	1.3e-37	51.7
WP_032441401.1\|3664823_3665468_-	hypothetical protein	Q1MVG0	Enterobacteria_phage	8.0e-110	79.3
WP_032441402.1\|3665464_3665656_-	hypothetical protein	NA	NA	NA	NA
WP_062955107.1\|3665639_3666050_-	hypothetical protein	A0A2P1MXC5	Escherichia_phage	4.3e-16	45.1
WP_048328152.1\|3666242_3666590_-	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.5e-50	82.6
WP_032418532.1\|3666709_3667495_-	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_004207253.1\|3667491_3668259_-	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_004152537.1\|3668258_3668468_-	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004152538.1\|3668614_3668848_-	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004144290.1\|3669002_3669584_+	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
WP_004164029.1\|3669950_3670250_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_062955106.1\|3670246_3671068_+	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.8e-130	80.2
WP_062955105.1\|3671064_3671946_+	recombinase RecT	T1SBJ5	Salmonella_phage	8.9e-136	84.3
WP_062955104.1\|3671994_3672243_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	4.9e-31	76.8
WP_009485475.1\|3672352_3672646_+	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
WP_048264082.1\|3672638_3672797_+	DUF1317 family protein	T1SAR0	Salmonella_phage	1.1e-17	78.8
WP_062955103.1\|3672793_3673456_+	hypothetical protein	A0A059VF56	Pseudomonas_phage	1.2e-47	46.6
WP_004197356.1\|3673452_3674046_+	MT-A70 family protein	T1SA14	Salmonella_phage	6.3e-109	91.9
WP_063002073.1\|3674042_3674285_+	hypothetical protein	NA	NA	NA	NA
WP_062955102.1\|3674227_3675478_-\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	5.8e-205	84.4
WP_004151979.1\|3675669_3677247_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_004151980.1\|3677314_3678781_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
3677770:3677787	attR	NA	NA	NA	NA

DBSCAN-SWA_14

3750131 : 3832641

Salmonella_phage(69.23%)

terminase,capsid,transposase,integrase,lysis,portal,head,tRNA,tail,coat,plate

attL 3794826:3794872|attR 3833181:3833227

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002914079.1\|3750131_3750869_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_002914082.1\|3751000_3752332_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	6.2e-48	31.9
WP_002914084.1\|3752377_3752761_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	4.0e-32	79.3
WP_002914088.1\|3753074_3753764_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	1.3e-57	53.0
WP_002914089.1\|3753821_3754907_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_002914091.1\|3755110_3755536_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	6.0e-13	40.2
WP_002914092.1\|3755605_3756304_+	DTW domain-containing protein	NA	NA	NA	NA
WP_004188841.1\|3756338_3758990_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_002914094.1\|3759110_3760466_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_002914095.1\|3760507_3760831_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_002914097.1\|3760834_3762133_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.1e-44	31.5
WP_004150973.1\|3768098_3770672_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.4
WP_002914109.1\|3770801_3771533_-	polyphenol oxidase	NA	NA	NA	NA
WP_002914110.1\|3771529_3772510_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_004145664.1\|3772641_3773379_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002914111.1\|3773649_3773985_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_100250063.1\|3774091_3774139_+	hypothetical protein	NA	NA	NA	NA
WP_004150975.1\|3774239_3775400_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_002914112.1\|3775396_3776269_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_002914113.1\|3776331_3777453_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_002914114.1\|3777462_3778533_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.8e-90	51.5
WP_004174804.1\|3778875_3779385_+	YfiR family protein	NA	NA	NA	NA
WP_002914116.1\|3779377_3780601_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_002914117.1\|3780614_3781097_+	OmpA family protein	NA	NA	NA	NA
WP_002914118.1\|3781105_3782476_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_002914119.1\|3782532_3782991_-	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_002914145.1\|3783110_3783458_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_002914147.1\|3783497_3784265_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_004150977.1\|3784296_3784845_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914149.1\|3784863_3785112_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_002914152.1\|3785371_3786736_-	signal recognition particle protein	NA	NA	NA	NA
WP_002914153.1\|3786899_3787691_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_004149392.1\|3787710_3788997_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914155.1\|3789116_3789707_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_002914158.1\|3789831_3790710_+	NAD(+) kinase	NA	NA	NA	NA
WP_002914159.1\|3790796_3792458_+	DNA repair protein RecN	NA	NA	NA	NA
WP_002914160.1\|3792605_3792947_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002914161.1\|3793013_3793304_-	RnfH family protein	NA	NA	NA	NA
WP_004188817.1\|3793293_3793770_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914164.1\|3793880_3794363_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
3794826:3794872	attL	NA	NA	NA	NA
WP_004150980.1\|3794966_3795344_+	hypothetical protein	NA	NA	NA	NA
WP_004150981.1\|3795371_3795590_-	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150982.1\|3795656_3796751_-	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150983.1\|3796747_3797233_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150984.1\|3797229_3799860_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.9e-115	41.9
WP_002896220.1\|3799852_3799972_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_004150985.1\|3799986_3800286_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_004150986.1\|3800338_3800854_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150987.1\|3800863_3802036_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150988.1\|3802184_3803258_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004200602.1\|3803309_3804428_-	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150990.1\|3804437_3806387_-\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004152935.1\|3806388_3807060_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150992.1\|3807052_3807961_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004150993.1\|3807947_3808310_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150994.1\|3808306_3808879_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150995.1\|3808973_3809840_+	hypothetical protein	NA	NA	NA	NA
WP_004150996.1\|3809862_3810309_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150997.1\|3810301_3810724_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_085955118.1\|3810686_3810890_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.0e-23	77.6
WP_004150998.1\|3810819_3811248_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_004150999.1\|3811244_3811628_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004151000.1\|3811632_3812142_-	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004134639.1\|3812122_3812338_-	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151001.1\|3812341_3812545_-\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004151002.1\|3812544_3813009_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004134644.1\|3813104_3813758_-\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151003.1\|3813761_3814814_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004151004.1\|3814830_3815664_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_019405037.1\|3815804_3817568_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151006.1\|3817567_3818611_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_024940854.1\|3818667_3818937_-	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151007.1\|3819458_3820460_+	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|3820459_3821539_+	hypothetical protein	NA	NA	NA	NA
WP_004151009.1\|3821525_3822209_+	hypothetical protein	NA	NA	NA	NA
WP_004151010.1\|3822304_3822538_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151011.1\|3822549_3822738_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004152765.1\|3822845_3824330_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3824329_3824581_-	hypothetical protein	NA	NA	NA	NA
WP_004151012.1\|3824810_3827195_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_004151013.1\|3827191_3828043_-	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151014.1\|3828039_3828267_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151016.1\|3828266_3828500_-	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004144796.1\|3828567_3828906_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151017.1\|3828869_3829070_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004151018.1\|3829077_3829587_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_001397669.1\|3829619_3829862_-	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151019.1\|3829984_3830614_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_062955148.1\|3830616_3831615_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.2e-183	94.5
WP_000019473.1\|3831660_3832641_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
3833181:3833227	attR	NA	NA	NA	NA

DBSCAN-SWA_15

4853351 : 4862226

Enterobacteria_phage(83.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152207.1\|4853351_4855685_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
WP_004152206.1\|4855699_4856020_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152205.1\|4856016_4856244_-	hypothetical protein	NA	NA	NA	NA
WP_004153681.1\|4856240_4856789_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_004152204.1\|4857612_4858350_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_004152203.1\|4858346_4858592_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152202.1\|4858609_4859176_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152201.1\|4859916_4860996_+	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|4861245_4862226_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP028541

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP028542

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection