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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP018807 Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome 0 crisprs cas14j,DEDDh,DinG,cas3 0 0 147 0

Results visualization

1. NZ_CP018807
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 29833 30 Streptococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_2 41057 : 45352 4 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 48864 : 52223 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 60029 : 60410 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_5 74736 : 77792 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 80862 : 87675 7 Prochlorococcus_phage(33.33%) protease NA
DBSCAN-SWA_7 103951 : 104881 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_8 123342 : 129916 6 Bodo_saltans_virus(33.33%) NA NA
DBSCAN-SWA_9 138531 : 143167 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_10 150213 : 151134 2 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_11 162280 : 174562 5 Chrysochromulina_ericina_virus(33.33%) NA NA
DBSCAN-SWA_12 178084 : 193229 14 uncultured_Caudovirales_phage(28.57%) protease NA
DBSCAN-SWA_13 204034 : 205480 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_14 208803 : 213790 4 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_15 217912 : 223972 5 Enterobacteria_phage(33.33%) tRNA NA
DBSCAN-SWA_16 228119 : 236340 9 uncultured_Caudovirales_phage(20.0%) NA NA
DBSCAN-SWA_17 245478 : 311672 72 Haemophilus_phage(37.5%) plate,tRNA,tail,head NA
DBSCAN-SWA_18 314852 : 319542 3 Vibrio_phage(66.67%) NA NA
DBSCAN-SWA_19 323749 : 327816 4 Indivirus(33.33%) holin NA
DBSCAN-SWA_20 346316 : 350930 5 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_21 362200 : 363313 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_22 388273 : 397807 9 Bodo_saltans_virus(25.0%) NA NA
DBSCAN-SWA_23 405550 : 407554 1 Serratia_phage(100.0%) NA NA
DBSCAN-SWA_24 424335 : 431084 5 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_25 434423 : 437226 2 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_26 443274 : 445131 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_27 450857 : 454633 4 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_28 465137 : 466601 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_29 471124 : 475440 6 Clostridium_phage(40.0%) NA NA
DBSCAN-SWA_30 481816 : 482080 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_31 488064 : 491583 3 uncultured_Mediterranean_phage(33.33%) transposase NA
DBSCAN-SWA_32 500617 : 501915 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_33 506159 : 508124 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_34 511146 : 511629 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_35 522386 : 529657 6 Tupanvirus(16.67%) transposase NA
DBSCAN-SWA_36 541516 : 545143 2 Enterococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_37 548800 : 549568 1 Pandoravirus(100.0%) tRNA NA
DBSCAN-SWA_38 557323 : 558832 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_39 567283 : 568291 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_40 575396 : 584927 8 Tupanvirus(20.0%) NA NA
DBSCAN-SWA_41 610436 : 620122 10 Enterobacteria_phage(16.67%) tRNA NA
DBSCAN-SWA_42 627740 : 629255 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_43 635340 : 636634 2 Bradyrhizobium_phage(50.0%) NA NA
DBSCAN-SWA_44 641845 : 650039 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_45 659004 : 662853 4 Synechococcus_phage(66.67%) NA NA
DBSCAN-SWA_46 667301 : 671760 5 Catovirus(33.33%) NA NA
DBSCAN-SWA_47 675440 : 679176 4 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_48 683667 : 685647 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_49 693571 : 697560 4 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_50 703105 : 704530 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_51 727077 : 737356 9 Organic_Lake_phycodnavirus(40.0%) NA NA
DBSCAN-SWA_52 742040 : 745515 2 EBPR_podovirus(50.0%) NA NA
DBSCAN-SWA_53 756239 : 762503 5 Vibrio_phage(40.0%) tRNA NA
DBSCAN-SWA_54 781063 : 781711 1 Acanthocystis_turfacea_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_55 816521 : 820603 4 Diachasmimorpha_longicaudata_entomopoxvirus(50.0%) NA NA
DBSCAN-SWA_56 832968 : 838044 2 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_57 844448 : 846278 1 Ostreococcus_tauri_virus(100.0%) protease NA
DBSCAN-SWA_58 850200 : 858577 6 Pandoravirus(33.33%) tRNA NA
DBSCAN-SWA_59 863389 : 864235 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_60 876215 : 878147 2 Pseudomonas_phage(50.0%) protease,tRNA NA
DBSCAN-SWA_61 884660 : 886178 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_62 890589 : 892080 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_63 902514 : 903564 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_64 912793 : 913810 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_65 936526 : 940813 3 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_66 948111 : 955569 5 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_67 966149 : 968618 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_68 974524 : 979358 5 Orpheovirus(33.33%) NA NA
DBSCAN-SWA_69 983175 : 985671 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_70 992471 : 992813 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_71 996471 : 996945 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_72 1007466 : 1010552 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_73 1015694 : 1035139 20 Tupanvirus(12.5%) protease,tRNA NA
DBSCAN-SWA_74 1043864 : 1046759 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_75 1053777 : 1054197 1 Sphingomonas_phage(100.0%) NA NA
DBSCAN-SWA_76 1057213 : 1057756 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_77 1064270 : 1069448 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_78 1079657 : 1090922 4 Escherichia_phage(50.0%) tRNA NA
DBSCAN-SWA_79 1101896 : 1118163 15 Acidithiobacillus_phage(12.5%) NA NA
DBSCAN-SWA_80 1122476 : 1124501 1 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_81 1136658 : 1152253 16 Escherichia_phage(14.29%) tRNA NA
DBSCAN-SWA_82 1160295 : 1167452 8 Pseudomonas_phage(40.0%) lysis NA
DBSCAN-SWA_83 1173418 : 1173703 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_84 1182663 : 1183389 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_85 1190773 : 1194688 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_86 1198721 : 1199669 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_87 1204245 : 1205694 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_88 1214032 : 1214677 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_89 1240666 : 1242415 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_90 1245813 : 1247777 2 unidentified_phage(50.0%) NA NA
DBSCAN-SWA_91 1252567 : 1258611 6 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_92 1262873 : 1263524 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_93 1270086 : 1272283 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_94 1299000 : 1305259 5 Moraxella_phage(33.33%) tRNA NA
DBSCAN-SWA_95 1311329 : 1314395 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_96 1330932 : 1332895 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_97 1339259 : 1341905 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_98 1347836 : 1354190 7 Bacillus_virus(25.0%) tRNA NA
DBSCAN-SWA_99 1368426 : 1369728 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_100 1373744 : 1384147 8 Staphylococcus_phage(50.0%) integrase attL 1378361:1378391|attR 1380286:1380316
DBSCAN-SWA_101 1391151 : 1404146 5 Ostreococcus_lucimarinus_virus(33.33%) NA NA
DBSCAN-SWA_102 1415873 : 1420057 5 Burkholderia_phage(40.0%) NA NA
DBSCAN-SWA_103 1424276 : 1430851 5 Escherichia_phage(66.67%) integrase attL 1418799:1418813|attR 1426680:1426694
DBSCAN-SWA_104 1438208 : 1438778 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_105 1443766 : 1444423 1 Acaryochloris_phage(100.0%) NA NA
DBSCAN-SWA_106 1447497 : 1449678 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_107 1457146 : 1459558 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_108 1464833 : 1469258 7 Streptococcus_phage(25.0%) transposase NA
DBSCAN-SWA_109 1481375 : 1484084 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_110 1487942 : 1506702 17 Ostreococcus_lucimarinus_virus(12.5%) transposase,tRNA NA
DBSCAN-SWA_111 1510016 : 1511423 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_112 1520280 : 1521615 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_113 1546682 : 1550556 4 Brevibacillus_phage(50.0%) NA NA
DBSCAN-SWA_114 1558025 : 1567338 9 uncultured_Mediterranean_phage(25.0%) tRNA NA
DBSCAN-SWA_115 1574490 : 1581893 6 uncultured_Mediterranean_phage(75.0%) tRNA NA
DBSCAN-SWA_116 1587629 : 1649427 60 Escherichia_phage(14.29%) protease,tRNA,transposase,integrase attL 1599751:1599767|attR 1642683:1642699
DBSCAN-SWA_117 1659700 : 1666459 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_118 1675776 : 1676412 1 Cafeteria_roenbergensis_virus(100.0%) NA NA
DBSCAN-SWA_119 1680001 : 1683185 3 Dickeya_phage(50.0%) NA NA
DBSCAN-SWA_120 1687379 : 1690325 3 Mannheimia_phage(33.33%) NA NA
DBSCAN-SWA_121 1694039 : 1747747 55 Mannheimia_phage(41.38%) terminase,protease,transposase,integrase,capsid attL 1714073:1714090|attR 1743582:1743599
DBSCAN-SWA_122 1757327 : 1759016 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_123 1763034 : 1769875 7 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_124 1775836 : 1777673 2 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_125 1807267 : 1811854 5 Chrysochromulina_ericina_virus(25.0%) NA NA
DBSCAN-SWA_126 1817439 : 1818222 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_127 1823686 : 1824694 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_128 1842316 : 1843054 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_129 1847666 : 1850933 3 Indivirus(50.0%) tRNA NA
DBSCAN-SWA_130 1860889 : 1862407 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_131 1871760 : 1878712 7 Vibrio_phage(33.33%) NA NA
DBSCAN-SWA_132 1885667 : 1886417 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_133 1899310 : 1899571 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_134 1904759 : 1905713 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_135 1910000 : 1929369 14 Enterobacteria_phage(11.11%) tRNA NA
DBSCAN-SWA_136 1942593 : 1943853 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_137 1948014 : 1948245 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_138 1961008 : 1974653 16 Lactococcus_phage(16.67%) NA NA
DBSCAN-SWA_139 1980266 : 1988254 10 Clostridium_phage(20.0%) NA NA
DBSCAN-SWA_140 2007791 : 2012598 5 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_141 2035197 : 2036706 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_142 2048850 : 2050391 2 Synechococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_143 2053843 : 2055603 2 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_144 2059226 : 2060717 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_145 2072929 : 2073973 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_146 2077922 : 2091053 13 Escherichia_phage(57.14%) NA NA
DBSCAN-SWA_147 2106609 : 2108484 1 Catovirus(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage