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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP020731 Leuconostoc mesenteroides subsp. mesenteroides FM06, complete genome 1 crisprs cas3,csa3,DEDDh 0 3 131 0
NZ_CP020732 Leuconostoc mesenteroides subsp. mesenteroides FM06 plasmid pLm1, complete genome 0 crisprs NA 0 0 0 0
NZ_CP020733 Leuconostoc mesenteroides subsp. mesenteroides FM06 plasmid pLm2, complete genome 0 crisprs NA 0 0 0 0
NZ_CP020734 Leuconostoc mesenteroides subsp. mesenteroides FM06 plasmid pLm3, complete genome 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP020731
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP020731_1 1054343-1054476 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP020731_1 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder 1054366-1054390 25 NZ_CP020439 Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence 26331-26355 2 0.92
NZ_CP020731_1 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder 1054366-1054390 25 NZ_CP020439 Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence 211779-211803 2 0.92
NZ_CP020731_1 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder 1054366-1054390 25 NZ_CP018188 Streptococcus salivarius strain ICDC2 plasmid, complete sequence 31262-31286 2 0.92
NZ_CP020731_1 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder 1054366-1054390 25 MN480762 Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence 94816-94840 2 0.92
NZ_CP020731_1 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder 1054366-1054390 25 MN693385 Marine virus AFVG_25M376, complete genome 10660-10684 4 0.84
NZ_CP020731_1 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder 1054366-1054390 25 MN693400 Marine virus AFVG_25M353, complete genome 10777-10801 4 0.84
NZ_CP020731_1 1.2|1054426|28|NZ_CP020731|PILER-CR 1054426-1054453 28 NZ_MH061178 Pseudomonas thivervalensis strain P101 plasmid pPHE101, complete sequence 51751-51778 7 0.75
NZ_CP020731_1 1.4|1054414|28|NZ_CP020731|CRISPRCasFinder 1054414-1054441 28 NZ_MH061178 Pseudomonas thivervalensis strain P101 plasmid pPHE101, complete sequence 51751-51778 7 0.75

1. spacer 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 2, identity: 0.92

acagctgctgctgatacttcatcaa	CRISPR spacer
acagctgctgctgatatttcatcat	Protospacer
****************.******* 

2. spacer 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 2, identity: 0.92

acagctgctgctgatacttcatcaa	CRISPR spacer
acagctgctgctgatatttcatcat	Protospacer
****************.******* 

3. spacer 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder matches to NZ_CP018188 (Streptococcus salivarius strain ICDC2 plasmid, complete sequence) position: , mismatch: 2, identity: 0.92

acagctgctgctgatacttcatcaa	CRISPR spacer
acagctgctgctgatatttcatcat	Protospacer
****************.******* 

4. spacer 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 2, identity: 0.92

acagctgctgctgatacttcatcaa	CRISPR spacer
acagctgctgctgatatttcatcat	Protospacer
****************.******* 

5. spacer 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder matches to MN693385 (Marine virus AFVG_25M376, complete genome) position: , mismatch: 4, identity: 0.84

acagctgctgctgatacttcatcaa	CRISPR spacer
gtaactgctgctgatactgcatcaa	Protospacer
..*.************** ******

6. spacer 1.3|1054366|25|NZ_CP020731|CRISPRCasFinder matches to MN693400 (Marine virus AFVG_25M353, complete genome) position: , mismatch: 4, identity: 0.84

acagctgctgctgatacttcatcaa	CRISPR spacer
gtaactgctgctgatactgcatcaa	Protospacer
..*.************** ******

7. spacer 1.2|1054426|28|NZ_CP020731|PILER-CR matches to NZ_MH061178 (Pseudomonas thivervalensis strain P101 plasmid pPHE101, complete sequence) position: , mismatch: 7, identity: 0.75

tcttcaactgatagcacagcttcaactt	CRISPR spacer
attgtggctgatggcacagcttcaactt	Protospacer
 .* ...*****.***************

8. spacer 1.4|1054414|28|NZ_CP020731|CRISPRCasFinder matches to NZ_MH061178 (Pseudomonas thivervalensis strain P101 plasmid pPHE101, complete sequence) position: , mismatch: 7, identity: 0.75

tcttcaactgatagcacagcttcaactt	CRISPR spacer
attgtggctgatggcacagcttcaactt	Protospacer
 .* ...*****.***************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 95417 : 102729 4 Pseudomonas_phage(33.33%) NA NA
DBSCAN-SWA_2 107446 : 110203 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_3 114612 : 117166 3 Staphylococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_4 124637 : 127635 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_5 132490 : 139152 6 Mycobacterium_phage(25.0%) NA NA
DBSCAN-SWA_6 143382 : 144672 1 Shearwaterpox_virus(100.0%) NA NA
DBSCAN-SWA_7 149697 : 159909 10 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 164372 : 167054 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_9 174279 : 174504 1 Morganella_phage(100.0%) NA NA
DBSCAN-SWA_10 179722 : 186326 6 Lactococcus_phage(25.0%) NA NA
DBSCAN-SWA_11 189418 : 193732 1 Saccharomonospora_phage(100.0%) NA NA
DBSCAN-SWA_12 197657 : 200360 2 Flavobacterium_phage(50.0%) NA NA
DBSCAN-SWA_13 204144 : 205044 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_14 219968 : 224821 2 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_15 233375 : 257947 22 Hokovirus(20.0%) transposase,protease,tRNA NA
DBSCAN-SWA_16 263496 : 283597 21 Bacillus_phage(18.18%) tRNA NA
DBSCAN-SWA_17 288248 : 304438 16 Bacillus_phage(30.0%) NA NA
DBSCAN-SWA_18 308579 : 322159 9 Cronobacter_phage(16.67%) protease NA
DBSCAN-SWA_19 326118 : 328800 1 Tupanvirus(100.0%) tRNA NA
DBSCAN-SWA_20 335237 : 336146 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_21 341617 : 344596 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_22 354416 : 360324 6 Brevibacillus_phage(33.33%) NA NA
DBSCAN-SWA_23 363952 : 365638 1 Ostreococcus_lucimarinus_virus(100.0%) NA NA
DBSCAN-SWA_24 369220 : 370834 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_25 376253 : 377600 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_26 386501 : 390062 2 Acinetobacter_phage(50.0%) NA NA
DBSCAN-SWA_27 393468 : 394458 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_28 401209 : 403021 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_29 407958 : 409454 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_30 413651 : 415957 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_31 421363 : 422665 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_32 428679 : 431243 3 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_33 434613 : 440123 4 Diachasmimorpha_longicaudata_entomopoxvirus(33.33%) NA NA
DBSCAN-SWA_34 444347 : 460243 13 Lactobacillus_phage(25.0%) tRNA NA
DBSCAN-SWA_35 466647 : 470963 5 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_36 475039 : 479631 5 Indivirus(50.0%) NA NA
DBSCAN-SWA_37 484799 : 491339 5 Klosneuvirus(25.0%) tRNA NA
DBSCAN-SWA_38 497094 : 506950 6 Streptococcus_phage(60.0%) protease NA
DBSCAN-SWA_39 510688 : 512467 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_40 522876 : 529252 6 Planktothrix_phage(50.0%) tRNA NA
DBSCAN-SWA_41 534835 : 535729 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_42 539182 : 540376 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_43 543560 : 550418 8 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_44 563814 : 565803 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_45 570473 : 590223 24 Leuconostoc_phage(64.29%) integrase,tRNA attL 566786:566800|attR 587517:587531
DBSCAN-SWA_46 593634 : 593952 1 Leuconostoc_phage(100.0%) NA NA
DBSCAN-SWA_47 600507 : 601239 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_48 610780 : 619729 8 Streptococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_49 625573 : 626539 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_50 630920 : 638090 9 Streptococcus_phage(60.0%) NA NA
DBSCAN-SWA_51 642553 : 643132 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_52 647991 : 655990 8 Enterococcus_phage(40.0%) NA NA
DBSCAN-SWA_53 662981 : 663617 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_54 669094 : 670420 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_55 678313 : 679965 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_56 699849 : 708887 6 Mycoplasma_phage(33.33%) protease NA
DBSCAN-SWA_57 712748 : 714056 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_58 721459 : 722866 1 Bandra_megavirus(100.0%) tRNA NA
DBSCAN-SWA_59 728191 : 742724 12 Bacillus_phage(20.0%) protease NA
DBSCAN-SWA_60 745892 : 748305 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_61 758972 : 768712 10 Aichi_virus(25.0%) NA NA
DBSCAN-SWA_62 773517 : 775986 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_63 784109 : 784865 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_64 788013 : 792904 6 Bacillus_virus(50.0%) protease NA
DBSCAN-SWA_65 804415 : 815834 10 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_66 827344 : 828529 1 Faustovirus(100.0%) NA NA
DBSCAN-SWA_67 839640 : 844902 3 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_68 854822 : 858728 3 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_69 870062 : 870752 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_70 876898 : 879166 2 Yersinia_phage(50.0%) tRNA NA
DBSCAN-SWA_71 883655 : 886855 3 Cedratvirus(50.0%) NA NA
DBSCAN-SWA_72 900034 : 901474 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_73 904633 : 907742 2 Cyanophage(50.0%) NA NA
DBSCAN-SWA_74 919133 : 921430 2 Bacillus_virus(50.0%) transposase NA
DBSCAN-SWA_75 925732 : 927762 3 Staphylococcus_phage(33.33%) transposase,integrase attL 915240:915254|attR 936361:936375
DBSCAN-SWA_76 947778 : 960955 12 Tupanvirus(25.0%) NA NA
DBSCAN-SWA_77 966474 : 971006 3 Streptococcus_phage(33.33%) transposase NA
DBSCAN-SWA_78 976748 : 983826 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_79 992248 : 996734 3 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_80 1003043 : 1007029 3 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_81 1012069 : 1022160 10 Burkholderia_virus(25.0%) transposase,integrase NA
DBSCAN-SWA_82 1041095 : 1046689 6 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_83 1054101 : 1057012 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_84 1070434 : 1071721 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_85 1079571 : 1082611 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_86 1090150 : 1097445 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_87 1101752 : 1119654 17 uncultured_virus(18.18%) transposase,protease NA
DBSCAN-SWA_88 1122857 : 1123574 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_89 1136488 : 1140250 4 Lactococcus_phage(50.0%) NA NA
DBSCAN-SWA_90 1145883 : 1146900 1 Moraxella_phage(100.0%) tRNA NA
DBSCAN-SWA_91 1156295 : 1163853 7 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_92 1189498 : 1196608 8 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_93 1201919 : 1208048 7 Pyramimonas_orientalis_virus(33.33%) NA NA
DBSCAN-SWA_94 1216364 : 1220386 4 Enterococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_95 1225265 : 1227849 3 Cellulophaga_phage(50.0%) NA NA
DBSCAN-SWA_96 1233540 : 1239907 7 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_97 1244070 : 1245378 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_98 1256576 : 1260046 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_99 1264205 : 1273217 7 Catovirus(16.67%) NA NA
DBSCAN-SWA_100 1278311 : 1280501 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_101 1299664 : 1312869 13 Bacillus_virus(42.86%) NA NA
DBSCAN-SWA_102 1323368 : 1325458 2 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_103 1331948 : 1336389 5 Bacillus_virus(33.33%) protease NA
DBSCAN-SWA_104 1339501 : 1347034 8 Synechococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_105 1363911 : 1366704 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_106 1373848 : 1378075 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_107 1382110 : 1396080 14 Streptococcus_phage(25.0%) NA NA
DBSCAN-SWA_108 1403491 : 1415226 13 Enterococcus_phage(16.67%) transposase NA
DBSCAN-SWA_109 1418591 : 1429161 12 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_110 1432438 : 1435856 4 Escherichia_phage(75.0%) NA NA
DBSCAN-SWA_111 1441784 : 1443098 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_112 1452970 : 1457303 4 Anoxybacillus_phage(33.33%) NA NA
DBSCAN-SWA_113 1468503 : 1470359 2 Gordonia_phage(50.0%) NA NA
DBSCAN-SWA_114 1474473 : 1480723 5 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_115 1485068 : 1486007 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_116 1492050 : 1500327 5 Bacillus_virus(66.67%) tRNA NA
DBSCAN-SWA_117 1504415 : 1506920 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_118 1510041 : 1519266 9 Indivirus(20.0%) NA NA
DBSCAN-SWA_119 1525139 : 1525457 1 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_120 1529152 : 1529335 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_121 1548780 : 1658931 120 Leuconostoc_phage(38.71%) plate,portal,holin,terminase,integrase,capsid,tail,head,tRNA,transposase attL 1567779:1567796|attR 1609513:1609530
DBSCAN-SWA_122 1662881 : 1666139 3 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_123 1670723 : 1671362 1 Phage_Wrath(100.0%) NA NA
DBSCAN-SWA_124 1682644 : 1684498 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_125 1688603 : 1696311 8 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_126 1708052 : 1710297 2 Ostreococcus_mediterraneus_virus(50.0%) NA NA
DBSCAN-SWA_127 1713858 : 1714740 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_128 1726683 : 1732566 3 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_129 1747243 : 1862294 119 Bacillus_phage(28.12%) transposase,integrase,protease,tRNA attL 1794662:1794721|attR 1805185:1805262
DBSCAN-SWA_130 1868077 : 1873950 6 Bacillus_virus(33.33%) transposase NA
DBSCAN-SWA_131 1885338 : 1891063 3 Streptococcus_phage(50.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage