CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	0 crisprs	NA	0	1
NZ_CP015339	Lactobacillus brevis strain 100D8 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0
NZ_CP015338	Lactobacillus brevis strain 100D8 chromosome, complete genome	2 crisprs	DinG,csa3,cas3,DEDDh	5	5
NZ_CP015340	Lactobacillus brevis strain 100D8 plasmid unnamed2, complete sequence	0 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015338_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015338_1

793699-794031

Orphan

I-E,II-B

Consensus_repeat	Method
GGATCACCCCCACACCTGTGGGGAATAC	CRISPRCasFinder
GGATCACCCCCACACCTGTGGGGAATAC	CRT
GGATCACCCCCACACCTGTGGGGAATAC	PILER-CR

5 spacers

The CRISPR arrays of NZ_CP015338_1

>merge|NZ_CP015338|1|793699-794031|CRISPRCasFinder,CRT,PILER-CR
GAAATGCCCCCACACCTGTGGGGTATACGCTTAAAATCAAGCAGTCGTTGGGCTACGTCAAGGATCACCCCCACACCTGTGGGGAATACTGACAACCAAAAAATATACGACTTTAACTTCTGGGATCACCCCCACACCTGTGGGGAATACCGGAAAGTTTAAATCTATTAAAGACGCACAATAGGATCACCCCCACACCTGTGGGGAATACCCGGTATGCGTATCGAAGAAGTCCCAACCAATGGGATCACCCCCACACCTGTGGGGAATACGATGAATAAGAAAAGAAAACAAAATAATACGCAGGATCACCCCCACACCTGTGGGGAATAC

>NZ_CP015338|1|1|793699-794031|CRISPRCasFinder
GAAATGCCCCCACACCTGTGGGGTATAC	GCTTAAAATCAAGCAGTCGTTGGGCTACGTCAA
GGATCACCCCCACACCTGTGGGGAATAC	TGACAACCAAAAAATATACGACTTTAACTTCTG
GGATCACCCCCACACCTGTGGGGAATAC	CGGAAAGTTTAAATCTATTAAAGACGCACAATA
GGATCACCCCCACACCTGTGGGGAATAC	CCGGTATGCGTATCGAAGAAGTCCCAACCAATG
GGATCACCCCCACACCTGTGGGGAATAC	GATGAATAAGAAAAGAAAACAAAATAATACGCA
GGATCACCCCCACACCTGTGGGGAATAC

>NZ_CP015338|1|1|793699-794031|CRT
GAAATGCCCCCACACCTGTGGGGTATAC	GCTTAAAATCAAGCAGTCGTTGGGCTACGTCAA
GGATCACCCCCACACCTGTGGGGAATAC	TGACAACCAAAAAATATACGACTTTAACTTCTG
GGATCACCCCCACACCTGTGGGGAATAC	CGGAAAGTTTAAATCTATTAAAGACGCACAATA
GGATCACCCCCACACCTGTGGGGAATAC	CCGGTATGCGTATCGAAGAAGTCCCAACCAATG
GGATCACCCCCACACCTGTGGGGAATAC	GATGAATAAGAAAAGAAAACAAAATAATACGCA
GGATCACCCCCACACCTGTGGGGAATAC

>NZ_CP015338|1|1|793760-794031|PILER-CR
GGATCACCCCCACACCTGTGGGGAATAC	TGACAACCAAAAAATATACGACTTTAACTTCTG
GGATCACCCCCACACCTGTGGGGAATAC	CGGAAAGTTTAAATCTATTAAAGACGCACAATA
GGATCACCCCCACACCTGTGGGGAATAC	CCGGTATGCGTATCGAAGAAGTCCCAACCAATG
GGATCACCCCCACACCTGTGGGGAATAC	GATGAATAAGAAAAGAAAACAAAATAATACGCA
GGATCACCCCCACACCTGTGGGGAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015338.1\|WP_011668945.1\|801123_801645_+\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
NZ_CP015338.1\|WP_011668936.1\|789779_790145_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015338.1\|WP_015474578.1\|783489_787095_-\|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl\|CDD\|213736
NZ_CP015338.1\|WP_011668940.1\|794170_794701_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP015338.1\|WP_011668950.1\|805926_807549_-\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|226038
NZ_CP015338.1\|WP_015474590.1\|807568_809044_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NZ_CP015338.1\|WP_086231758.1\|790963_791947_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
NZ_CP015338.1\|WP_011668941.1\|794846_795782_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|130256
NZ_CP015338.1\|WP_011668943.1\|796730_797645_-\|prenyltransferase	unknown	unknown	gnl\|CDD\|260125
NZ_CP015338.1\|WP_011668944.1\|797746_800863_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP015338.1\|WP_011668833.1\|777544_778306_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP015338.1\|WP_107696508.1\|802346_803054_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015338.1\|WP_011668937.1\|790221_790821_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|379199
NZ_CP015338.1\|WP_086231757.1\|779717_783506_-\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP015338.1\|WP_011668942.1\|795796_796573_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP015338.1\|WP_011668834.1\|778720_779626_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015338.1\|WP_011668949.1\|803367_805188_-\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP015338.1\|WP_011668939.1\|792227_793538_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP015338.1\|WP_011668934.1\|787389_788532_+\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|181490
NZ_CP015338.1\|WP_011668935.1\|788634_789648_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200578

Protein	Function_ID	Function_description	E-value
NZ_CP015338.1\|WP_011668945.1\|801123_801645_+\|QueT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	2.03886e-36
NZ_CP015338.1\|WP_015474590.1\|807568_809044_-\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	1.79677e-117
NZ_CP015338.1\|WP_015474578.1\|783489_787095_-\|PD-(D/E)XK-nuclease-family-protein	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP015338.1\|WP_011668940.1\|794170_794701_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.64201e-15
NZ_CP015338.1\|WP_011668942.1\|795796_796573_+\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	1.49732e-17
NZ_CP015338.1\|WP_011668941.1\|794846_795782_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	7.68686e-106
NZ_CP015338.1\|WP_011668943.1\|796730_797645_-\|prenyltransferase	gnl\|CDD\|260125	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase. Human UBIAD1 is an enzyme involved in the synthesis of MK-4. Menaquinones (MKs, also called bacterial forms) are one of the two forms of natural vitamin K, the other being the plant form, phylloquinone (PK). All forms of vitamin K have a 2-methyl-1,4-naphthoquinone (menadione; K3) ring structure in common. At the 3-position of the ring, PK has a phytyl side chain while MKs have several repeating prenyl units. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.	1.05209e-57
NZ_CP015338.1\|WP_011668944.1\|797746_800863_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	3.69128e-73
NZ_CP015338.1\|WP_011668833.1\|777544_778306_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	6.69297e-20
NZ_CP015338.1\|WP_011668950.1\|805926_807549_-\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|226038	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	0
NZ_CP015338.1\|WP_011668937.1\|790221_790821_-\|SDR-family-oxidoreductase	gnl\|CDD\|379199	pfam13460, NAD_binding_10, NAD(P)H-binding.	8.82255e-28
NZ_CP015338.1\|WP_086231757.1\|779717_783506_-\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP015338.1\|WP_086231758.1\|790963_791947_+\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	1.1623e-165
NZ_CP015338.1\|WP_011668949.1\|803367_805188_-\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	9.83052e-111
NZ_CP015338.1\|WP_011668939.1\|792227_793538_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	4.97728e-143
NZ_CP015338.1\|WP_011668934.1\|787389_788532_+\|ArgE/DapE-family-deacylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP015338.1\|WP_011668935.1\|788634_789648_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200578	cd10954, CE4_CtAXE_like, Catalytic NodB homology domain of Clostridium thermocellum acetylxylan esterase and its bacterial homologs. This family is represented by Clostridium thermocellum acetylxylan esterase (CtAXE, EC 3.1.1.72), a member of the carbohydrate esterase 4 (CE4) superfamily. CtAXE deacetylates O-acetylated xylan, a key component of plant cell walls. It shows no detectable activity on generic esterase substrates including para-nitrophenyl acetate. It is specific for sugar-based substrates and will precipitate acetylxylan, as a consequence of deacetylation. CtAXE is a monomeric protein containing a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold as other CE4 esterases. However, due to differences in the topography of the substrate-binding groove, the chemistry of the active center, and metal ion coordination, CtAXE has different metal ion preference and lacks activity on N-acetyl substrates. It is significantly activated by Co2+. Moreover, CtAXE displays distinctly different ligand coordination to the metal ion, utilizing an aspartate, a histidine, and four water molecules, as opposed to the conserved His-His-Asp zinc-binding triad of other CE4 esterases.	1.66375e-79

>NZ_CP015338.1|WP_011668939.1|792227_793538_+|NCS2-family-permease
MQRIANFFHFEELGTNYKTEILAGLTTFVSMAYILFVNPQVLGASGISQGAVFTATAFASAFGCMLMGILANYPIAISASLGINAFFAYSVVIGMKVPWQTALAGVFVASILFMILTAFKLREKVVDAIPRDLKMAISAGIGLFIAFIGLSQGGLVAADKSTIVSLGSLQVGSTWLTIFGLLVTVLLMSARVPGAIFIGMVANSILGLVTGLIPMPSHIVAAVPSISSTFMVGLTHVGSINSLQMIVVVLTFLLVTFFDTTGTLVGLAEQAGLVKNNKLPRIGKALMADSSTMVVGSLLGTSPMGAFVESSAGIAVGGRTGFTAIVTGILFIFGAFFSPLLAVVTDQVTAPALIIVGVLMAQSLKNIHWEKFEVAAPAFLIVLGMPLTYSISDGIALGFITYPLTMLAAKRGKEVGAMMYGLAVVFVLFLWILNAA
>NZ_CP015338.1|WP_086231758.1|790963_791947_+|aldo/keto-reductase
MTHELVTLGKTDVRTTPLGLGTNAVGGYNLFPNLKDDDGLNLVKAGLNHGIQLLDTAFVYGLGHSEELVGQAMHDFDRHSFTLATKGAQDFSSGEQVINNDPAFLTAQVDASLKRLNTDYLDIYYIHFPDKQTPKAEAVGALQRLREQGKIRAIGLSNFSLVQVKEANADGYVDVVEDEFSLLHRDHETDLMPYLADHQISFVPYFPLASGLLTGKYDQSVQFPADDIRSQISDFQEPRYGQALTAIDQVRPIAQAHQATVAQTILAWYMQNPLVSVVIPGAKRAAQVEANAQALEVTLTAAEYQTIDTAFAGFKATANGKSLADPD
>NZ_CP015338.1|WP_011668937.1|790221_790821_-|SDR-family-oxidoreductase
MTTYLIIGANRVGQLVARQLATESATVRLLHDGKETLPSDLATQVTELTGDLTQEATYTAALQDQPIIFSALTGMDVDLAFEALFDAQYHQRLTFQRFVMLSTAGVDQEVTGDLAYPGITDVAEYLKQQRYAAKLVDEAEFPYTILRPVTLADSPRRDPQIIKEGAAVPAGTVSRETVAQVAVSLLQAGGADYQSLAIC
>NZ_CP015338.1|WP_011668936.1|789779_790145_-|hypothetical-protein
MALQIDEQQLQAIRERMDEANQRAHFVIFQSVERESGKVLRLITDIDSFRAIQEQHQDDSDMVIIQDIVPITDTLARWAVAENMAAQQGDNAEVLADLERYTNEVLKENHQTVNPPESTDD
>NZ_CP015338.1|WP_011668935.1|788634_789648_-|polysaccharide-deacetylase-family-protein
MVKIGKVLGVLVATVALGVGSVPVTGQAKSTNKTVTFGQLTNKNTHRLAAIRQAARQEILTTTKAKSSRVAAVYQVKLPTHMTKTATLTKSGLRMNLLKNSFKVKQITIPYAQLKGKVLNRYLPKANRTSTIKTSKLVALTFDDGPDPTLTSRLLKTLKKYHAHATFFEVGQSVSRYPKISRAVLAGGNEIGNHSWNHPNFNSIGTAQTVSQVTRTNRAIYQATGTLPQYVRPPYGNITAAEGRAIEQPIIRWSVDSRDWAYLNSSKDINEVMHDTHGGDIILMHDIHAQSVAAAPTIIKRLQAKGYKLVTVSQLLNSQALPGLQYFGAHDYRTVGK
>NZ_CP015338.1|WP_011668934.1|787389_788532_+|ArgE/DapE-family-deacylase
MEDSEQIQILQHLISINSVNDHEADVAAYIQQLFADHGITSQVIPYADGRANIIAEIGDTTSDQVFALAGHLDTVATGDVADWKFDPFSAHIVDNQLYGRGAADMKSGLAAMVITLINLADQQTPLTGRLRFIGTVGEENGAMGSRMLTEKGVADDLTAMVIGEPTGGNLVYAHNGSLNYHVYSRGVGAHSSMPEKGINAITNLIKYVTAEATAFDDAPVSPELGPLVHSVTVFNGGEQVNSIPAKAELQGNIRPIPEFDNTAVIHRLHETVDRLNQEPGVDLALHVDYSFKPIISAKDSPLVQTTKAIADQEFGHAIDLQVIHGATDASEFTKSSHDFPVIVYGAGKWDAAHALNESVDLDEFRHVQHVYQQLVEKFLS
>NZ_CP015338.1|WP_015474578.1|783489_787095_-|PD-(D/E)XK-nuclease-family-protein
MSLQFILGSAGQDHRTPMVTALAQQVTAHPTDQSYYLVPNHIKFETEVDVLSALKEQIAPEQALFAQTQVQVFSFTRLAWFFMKNEPIYQLPRISPAGLNMLIYQIIQTHADELTIFRGEVDRPGFVSQLATQLAEFKVGQVTAADLMSAIEQLDTTNTDLQAKLHDLMIIYEAFETQMMGKFVENTDLLNQLATYLEQQVDLQHAHFYLEGFSQLSAQERQLVAILIQRSASVTVALNLDHGYPQKLPDKTMLFFQSAKLYQQLYLVAQANRVPILIDQQAKTARVSADLQALDTYWQASQTLSPQPSVVEKPTHIQIVQAANRYVEVSRVATQIRQLVATGNYRYRDFLVLTRHLDAYQTVIDPIFQAQAVPYFDDADIRMADHPFVELLNALFDVQRRNYRYADVFRVLKSELLLPRDADGELMAVPAYRQALALTENFVLKNGLEGQHWWTQDKDWVYNRFAVGDGGVQTTRDDQISAQINRIRRFVKQTLPPFFARLKVAATYTDAAAVLYQFVANAGVSERLMTWRDQAIAAGDLTKAGQPEQTWAAFCDILDEFHTILGDLPTVLPDFQALLQAGFAGAKFSQIPSTLDQVVISESGIVQANNRKITFIMGATADTMPDNQIPTTLLADNDRQDLSARLQQVDDGTYLRDDAATQLAGEPYLNYLAFMSGSERLIFSYPAMSDDARSGLQLSPYVARIKDYFGLSIDIAAANPVAEDEAILPFVGTRRTTLRHLVQASHDSQLREVPLSRSWLYVLNLLRTDPTYGELTTKLLGSLSYRNVPTQLTPDIVTQLYGTKINTSISKLEEYYANPYAYFLKYGLNLQERDVFALSPASTGEFFHATLDGLMKLVNDQKLNLAALDDQQLREMTDEVMAKLLDTTENPQFAILESSHRMGYIRQQLMKTMRQMAKTLQEQSKRTKLRPKRTEVQFGLGDERGLAALSFDVGKRRQVTVRGRIDRLDAVQVKDKTYLGIVDYKSSEHKFSYQEAYYGRAMQMLTYLDAVKQNLPTLLDAPTAKDAELAGAVYLHLQNPILKAAEVLGEDPLTSLLKAEQYQGLLLDDPDLLTNLDTLFGTPDYSGSSLLFRGLRRTKTGKITSYGKLLVNSNELDLLLTHTERLIKRAATDIFDGRVDLAPFREQNRTALQYSPYKSVMQFDPLLKENNYRDLPSLNKDDVMARIAAEQEQEATDEHEI
>NZ_CP015338.1|WP_086231757.1|779717_783506_-|helicase-exonuclease-AddAB-subunit-AddA
MSTKFSFTPSQDQAIHQTGNNLLVSASAGSGKTRVLVQRVIERLKTGVGIDQILIVTFTKAAAAEMRERIQTALRQELAVSQGDSAQQQFYLRQLNQLPVADISTLDAFCLRLLQRYYYVIDLDPVFRLLADETENGLLRDEVWADLREDLYANDDSGLFARLTENFSGDRNDQGLADLVQQTYTFANATPNPTAWLAELPQPYQLDSDQLMTTSFYQQRLRPFFQSQLQQLQADLTSAQALANQAGLDKQAAHVTAVLENVAAVQQLVTGDSWNALRAAIQDFAWGRMPAVRKTNEDYPIYNELKTTYYDPARKQLDSLKKTYLIQDEQQAMTTIRRSGELVGELSRVVTAFRTAYRQEKQCRHVLDFADVEHAALAILTQDSDQSRQVAAQLRHQFAEIMVDEYQDTNGLQEAILTAIAEPAPQGNLFMVGDVKQSIYRFRQADPTLFMTKTDQYAADAAAGELIVLAENFRSMKNVDDFTNLIFKQLMDRELGEIDYMGAAQLKFGASYYPDTVTSTAELLVYLTEDAPESAGDADSEAMDATFQVDNKHQGEVLMVGQKIQQLIADQTPIYDREAKQVRPMTYGDITLLTPTRTNNLIITDELRRLGIPVVVNDAQNYFKTTEIQIMMALLQIIDNPYQDIPLAAVLRSPIVGLNENELALLRINQRTGDYYQAVLHFQRSFVPNQASDFQQAVYQKVSHFLEQLQEFRDIAQQDELVTLIWRIYQETGFLDYVGGMPAGEQRQANLHALYERAKSYEQSSFKGLFQFVRFVERLQERDDDLAGAPVQAADDAVSVMTIHGSKGLEFPVVFIMDASRQFNKQDQQGNYVMSGKTGIGIDYLDPDSRVKAPSLQKLVTAQAISRASLAEEMRKLYVALTRAESRVYIVGSHKTQEAAISAWEQAYQSPNLVLNATLREKNTLANYLDWIGMCLVRDPKFAAELRQGTTTFSGLAGDPATFAVHFVTAHDLGPTQGVNETAVDWLQAASETAAKVTTPPVDTEQLHQIMDFRYPHQAATATTAYQSVSEAKRLFEDPDNATIGEYQASATGQVGGHRFVTHDFARPDFLQTVREPLATEIGSATHLVLQQLDVTVTPTLNRVQGVIDQLVADQVLTAEVAQRIQPELILRFFSSSVGQQVLAAPDQLHREVPFSLLMPARSLFQDFQETDSQVLVHGIIDGYLTTPAGVILFDYKTDHVNAQNQAASIEKIVERYGGQVNLYAAALKQMTGQPIVGQYLYLLAIGELVAVPEQQVRRLSE
>NZ_CP015338.1|WP_011668834.1|778720_779626_+|hypothetical-protein
MTIITRIIKGCLCLLALGTVTVGSLSGRAQTEKPSALVKVGDYRASTDFLNLSAYYQTIRPVTVKVAYVSTYKTQHTIMQKLTLPAGLTVAGNLTTTKHGSYLVPSLQLYLARLSYPALQNSAKANYTLDPGTSAYSPQATISDTTKLRAFKRVAAPDYMPGYSHGDLYIGGAKAALSPVEPTTKSIRITPDGYVEVLKYDTKANAGLGFYQKPVSLAKIVKTRFHDPNRTLYLNHPLASVKTKAITQNGQTRYRLTLKNLHTPQHIAGDPETGTAGTFDSLYSIGGTTYYTFIGYDGVSN
>NZ_CP015338.1|WP_011668833.1|777544_778306_-|helix-turn-helix-transcriptional-regulator
MGWDLQFTHYLDDMQTYRSRDQTAKALILLGYVERDFIRFYRAGRIAEGIQFAKENLARSRLLLNELPPQQKRAQLHGLVDILAFEGVQNHAFIYEFIQLRDDYHRQIKTLPVTTARYVPWIIEIVQDFGNLAAKDGLPYDDHLESTLDIIYYVSAHLRDKLTVKQVVDHVNQRCNPVGVQRAFSDEMQMSIRDYINVKKIREAQRALLTTTVSVKQIAQELGFYDTSDFSKRFKREIGQTPLEYRQINSQKD
>NZ_CP015338.1|WP_011668940.1|794170_794701_-|MarR-family-transcriptional-regulator
MSDLFKQETTASKLIEFGMLRHVADDIADRDDDHPERQMIFQGQGKILLALMQEDHLAQKELAERLNLTAQSTAEFVRKLEKKGFVTRMKSPTDQRVTVVSITDAGRKETTKNVQQIPPFLTILDDTELDQLAHILDKVNQHMYEEVNAANPTWFNKFHQVIMNRMLSQLHSGEDR
>NZ_CP015338.1|WP_011668941.1|794846_795782_+|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein
MQPSTAITVSHLSKTFGVKTVVDDLSFAVKPGEVFGLLGPNGAGKTTTLRMMTTLLKATSGTVTIFGHDVRKESRLARAMFGLTGQYASIDEDISARENLMIFSRLNGLSRTAAKQRTMELLEEFSLTASANKALSDFSGGMRRRLDLAVSLITRPGLIFLDEPTTGLDPRTRSQMWTTIRQLVAHGSTIVLTTQYLDEADALADRIAVIDHGKLIKLGTPTALKQQIGGATLTLSLAKATQGPLAQRLLAQALHAQPTLHGAQLTAHLENPNQITDLLVQLQAADISLANIAVQEPSLDDVFFALTTGKN
>NZ_CP015338.1|WP_011668942.1|795796_796573_+|ABC-transporter-permease
MEIQTQHGNLIGNTLTMAYRNLLKTLHNPDRFMDVIIQPVMFMLLFGYLFGGAIAGGVQAYLPTIVPGILIQTLLSAASGSGAQIREDLDSGVFDRFKSLPMAHIAPLAGQLFADILRLLVATVVSLLTGYAMGWRPTVGFGWIIVIAALAIFIGWAISWVFALFGLLAKSSSMVQSVSMMVMMLLSFLSNAFIPLKTLPHFMRVIADANPITYVITAIRQILAQGAWNNNAWIVLIFGIGIVVLFAPLTVWAYNHNN
>NZ_CP015338.1|WP_011668943.1|796730_797645_-|prenyltransferase
MPKWLNWSVFYELTEIYTAPLNVMWFILGAAIVQYHVHTVDWINVGLCLAVVFIFDLAVNVADNYYDYLHAHDREDYAQKTNPIGRLHLPAKGVFWLAWVLYAVAAIPGIVLVMRTGWSVAVFGVVGYLIGIFYTAGPHPINATPVSAAVVALAIAFGIQLTCVYVSIYGQQPLSWSIVGTTFLLCMPLTLIFFTVQLANDTSDRDEDIANHRYTLAVYLGKRRSVRLIQLFLVIGTLWTLVNVGLGLAPLVTALAVILLPVMWRGMRPFFAIQDKRKTFMAMVKSASLFFIAYPVLFALGTWL
>NZ_CP015338.1|WP_011668944.1|797746_800863_-|YfhO-family-protein
MRIAHHRWPLWVLYTLAFAVIAAISFGIFGVANRTLIWNMDGITQHYPLIREFHQLLMKSGLAGVTGWSWTFGLGADKLTTLAYYVLGDPFAYALALLPTRLLEVGYGWAIVLRLYAAGLAFLVLAKRYAFKPGSQLVGAVTYAFTGYSLMVGVHHPFFLLPMVWLPLLFVGIDRILQGKGWGFLAAVTGITILSNFYFAYILGLGSLIYALIRYFSCRERGQLAVSWLVATARFLAAAVTGLLISGVLLLPSLLMMLKSTRTVSIFANGLWLYPLNYYLTLSNTILTTGNTLNYWAVLGITGFGFLGCVYTLVHWRQHRWLAITLLAVIVGLLFPAVAAFFNVLSTPSNRWILLAAVPFGLALMTLMDHLTALSLPDRWWLLGSSFGLLGVIYLSNGFTFSNPARDLLTYGLLLATTLLVVVALPRRWTFGGIGILIGLNLINNAWGYYDPNLSNQATQQLRVSDATRYIQDYFDGAQSAVQSDHAFSRVSATRNYNLFRTVGNNMTMSHGLHGIMSYFSVQNGYVGQFSRDLGNAEYAMNAPMGQADDRTTLTQLLGVKYLFARTDQVTNHAALPYGYRAAKKIYPEQPVYGLSNGVGTQVLTTNLAFPLVYTQPQVLTTKAWHRLSLVDRERSLTQAAVTSQPVAGVKAAHYQSPKRTLAYTVTPDTIPVIDSTNKVIQYRLKQAAAGQKTGLNDKQLATYGTTIQTPQLTVDKNGLLSKQEVQQYGPMVQLNRDQAALQRVLTHNQQIIQRTTQANQTGLHQLTSDAQGQPIKYTVTLKHPQQAQGTELYLELDGISSQQLTTKDQLQTADNTSVLGNTPRSNLTKLNAWRTAISNPDLGDYWVTAKTRNATKTFSQFGLDNLSDYEPKHQVLLNLGYSQQLRKTIDVTFNATKQLNIKSAKLIAVPFGARYDQQVHAVQRRGLQHAQIRDNAVTGELTTPQASVMTTSIPYSSGWRLTVDGRPTATTVVNEGFVGARLAAGTHRIRLTYRTPGLIGGLILTIVGLVVWLGEMSWWHWRHPQAKTRATKSKSDA
>NZ_CP015338.1|WP_011668945.1|801123_801645_+|QueT-transporter-family-protein
MNSKKRVSGVSDTRSMVLAALIAALYVVLTTVLSALSFGPFQIRLSEMFNHLVVFNKRYIAAVTLGVFIANIIASPFGFLDIATGTIQTLLALLVMYWLSKFVHNRIAQMAINTVVAVFFMCMIAWEIAIVSKTAFWPTFWANWLSIGWGELVSMIFGGVVIYLLSLKIDFTK
>NZ_CP015338.1|WP_107696508.1|802346_803054_-|hypothetical-protein
MRTKHAMDIGAREKTKSGYKPIYIKKNKLLSISAMNIRGKYPHFKTYVAVTLGDIHYAKINKVVYMKKFIRYTTANFTPVKTLRAPIRTQLLRQGTGFVMSSTHINQPTYSSALFVTLDNYIQTYSQARMTKINDKWMNADVDSDFAKLKPTDSVKVTKLVKTGTAYKIDYARPLKSFSDKKIGPHHYRLTIKQLGRQYQNYTPIDDTYDTAASWTNFTINTKPYFSGFADWGLD
>NZ_CP015338.1|WP_011668949.1|803367_805188_-|DUF2207-domain-containing-protein
MRYRQGVWWLLGLILALIGGCQMTTINAAASYTIKPFRMNVDVTRRGDANVTETMTYHFDDDYHGVYNVQDLRGIQGGRLTGVSTRLNDGGMRPARAVDSGDSRYQVSQSNQRLKVKVYRAVSAGDRLQVTYRFHLTGVVTNYADTAELNWKLIGAGWDEPLHNVRLTIQLPTQPVKQLQAWTHGPLTGHTAVQSKTGRVVMTIPENPANTFVESHLLFPTQVTAANPNTCTQKRRAAAQKQEAKLAADANAKRQQQRWLVVGGYAALTVGLVALLAGSYHWMRHHPANRYPHPIPVDHFFDVPGVAPAVAVALLNFRSPDTDALSGELMMAASRHEIKLEPVREKKHDTVRLTKTGTVTNIFLQRAFERLGSLDSFTLRDLKQFAKKDKGSRVSHWFKEWQNQVDEAAEVYQDGDNIAIRQRLLGIAWGLTFVIAAWIGVSALVDPLVFKLSAGLGLVVLFGSWTYISRQRRQVDRNTAEGLVLINEIGGFRRMLKDIGHFNTAKIGDLILWEQILPYAAAFGLAKQVADKLAIDFGKDVVAGALVAYPLYYPGAFNLSLGDMVQTSIAGAIDTSANFSSPSGGSGGFSGGSSGGFGGGSGGGAF
>NZ_CP015338.1|WP_011668950.1|805926_807549_-|glycoside-hydrolase-family-43-protein
MKIQNPVLPGFNADPSMIRVGDTYYIANSTFEWFPGVRLHESKDLVHWNLLPSPLSTTTLLDMKGNPASGGIWAPDLSYADGKFWLIYTDVKITEGPFKDMTNYLTTATDIRGPWTDPIAVNGVGFDASLFHDENGRKYLVQQTWDHREYHHPFNGITLTEFDTATMQLKPETARNIYNGTDVKLVEGPHLYQINGYYYLFAAEGGTVFTHQEVVARSKTLDELSFESEPDGPFITNMDTPDFYLQKQGHGALTSTPSGEWYYASLVSRPWNHTNESSHDPRGWSTLGRETSIQKVEWDDAGWPRVVGGHGGQVEVDAPKDAIETTAPKDHSQHDDFDQPTLDLNWNTLRQPFTAQMGSVGNGELKLIGQQTMSSNFDVSLIARRWQAFNFDAETKVKFDPFTYQQMAGLANIYNDKHYSWIFITWDEKKGHVIEVAQNDNNNYTSYLKDDAIKIPDGTDYVWFRTKVRKQSYTYEYSFDGQNWETVPVELDAAILSDDYVLQNYGGFFTGAFVGLMAADYAGYKRVATFDYFDYQELPD
>NZ_CP015338.1|WP_015474590.1|807568_809044_-|MFS-transporter
MASNTQATAQPAANDEFAKLSWRERISYGAGDLAQNLIFGTVGSMLLFYLTTVYGISAAVGATIFLVVRWVNVFWDPWVGAFVDKHGFKRGKYRPYLIYGGIPLTIMAALLFLPIDAVRGNVFYAFIAYLATALIYSFVNIPYGALNASLTRDNDEISTLTTVRMTEANIGNLLVYTFLPLFVQLASPNPQSKDIGFFGIHMNLGDYTSPKSGGAYFMVMAIYMIIGFIMLMCTYFGIKERVLPTEKESSAVKYADLWVEFKQNKPLQILGLFFLIGFTFMFFGNTVWPFYMQYNIGHSEWVASINLIGSIPGIFLVFLWPIVRKKIGKRQFFYAFLTLFIIGTLVLWVWSFPAFKNSVALGYIGRFLMQWGITAATGYMWSLVPEVVSYGEYHSKKRVAGIINAIMGLFFKIGLALGGIIPGYINAFFKFDGTKTTQSAGALAGIQWSMIWLPIILAFVAMWVMSRYTLTDSDVNKMNEELTAERKANQV

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Crispr_ID: NZ_CP015338_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015338_2

1629790-1629940

Orphan

Consensus_repeat	Method
CGCCACTCCCTATACAAGGGGGATCCAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP015338_2

>merge|NZ_CP015338|2|1629790-1629940|CRISPRCasFinder
CGCCACTCCCTATACAAGGGGGATCCACCCAGGTGAATAATGTTCACCTGCCTCTAAACAAGCGCCACTCCCTATACAAGGGGGATCCACACCGTTATGGGTCTGAGCCATAACGAATTTGGATGACACTACCTATATAAGGGGGAGCCAC

>NZ_CP015338|2|2|1629790-1629940|CRISPRCasFinder
CGCCACTCCCTATACAAGGGGGATCCAC	CCAGGTGAATAATGTTCACCTGCCTCTAAACAAG
CGCCACTCCCTATACAAGGGGGATCCAC	ACCGTTATGGGTCTGAGCCATAACGAATTTGGA
TGACACTACCTATATAAGGGGGAGCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015338.1\|WP_024855109.1\|1634124_1634787_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225110
NZ_CP015338.1\|WP_086231831.1\|1622364_1622844_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015338.1\|WP_086231838.1\|1630015_1630285_+\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
NZ_CP015338.1\|WP_011667977.1\|1637523_1637853_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015338.1\|WP_086231835.1\|1625281_1626979_+\|terminase-large-subunit	unknown	unknown	gnl\|CDD\|226974
NZ_CP015338.1\|WP_086231834.1\|1624811_1625285_+\|phage-terminase-small-subunit-P27-family	unknown	unknown	gnl\|CDD\|377461
NZ_CP015338.1\|WP_011667980.1\|1635391_1636321_+\|IS30-like-element-ISLpl1-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP015338.1\|WP_086231836.1\|1626923_1627136_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015338.1\|WP_011667978.1\|1637270_1637477_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015338.1\|WP_051464043.1\|1636328_1637192_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP015338.1\|WP_157660936.1\|1628229_1629765_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NZ_CP015338.1\|WP_042522391.1\|1630947_1631148_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP015338.1\|WP_082265209.1\|1622858_1623050_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015338.1\|WP_157660935.1\|1623036_1623381_+\|phage-head-closure-protein	unknown	unknown	gnl\|CDD\|273692
NZ_CP015338.1\|WP_086231839.1\|1630457_1630829_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015338.1\|WP_086231837.1\|1627132_1628233_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|273677
NZ_CP015338.1\|WP_024855110.1\|1631847_1632813_+\|VIP2-family-actin-ADP-ribosylating-toxin	unknown	unknown	gnl\|CDD\|367527
NZ_CP015338.1\|WP_086231830.1\|1620824_1622219_+\|virulence-protein	unknown	unknown	gnl\|CDD\|227832
NZ_CP015338.1\|WP_011667983.1\|1632951_1634055_-\|anion-permease	unknown	unknown	gnl\|CDD\|238537
NZ_CP015338.1\|WP_086231833.1\|1623591_1624002_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038

Protein	Function_ID	Function_description	E-value
NZ_CP015338.1\|WP_024855109.1\|1634124_1634787_-\|EAL-domain-containing-protein	gnl\|CDD\|225110	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].	6.04013e-24
NZ_CP015338.1\|WP_086231833.1\|1623591_1624002_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	6.32635e-05
NZ_CP015338.1\|WP_086231835.1\|1625281_1626979_+\|terminase-large-subunit	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	1.53194e-105
NZ_CP015338.1\|WP_086231834.1\|1624811_1625285_+\|phage-terminase-small-subunit-P27-family	gnl\|CDD\|377461	pfam05119, Terminase_4, Phage terminase, small subunit.	1.9357e-26
NZ_CP015338.1\|WP_011667980.1\|1635391_1636321_+\|IS30-like-element-ISLpl1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.51796e-68
NZ_CP015338.1\|WP_011667983.1\|1632951_1634055_-\|anion-permease	gnl\|CDD\|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	6.33006e-44
NZ_CP015338.1\|WP_051464043.1\|1636328_1637192_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.47131e-44
NZ_CP015338.1\|WP_157660936.1\|1628229_1629765_+\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	5.58029e-58
NZ_CP015338.1\|WP_042522391.1\|1630947_1631148_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.60628e-34
NZ_CP015338.1\|WP_157660935.1\|1623036_1623381_+\|phage-head-closure-protein	gnl\|CDD\|273692	TIGR01563, hypothetical_protein_AGR_C_1752, phage head-tail adaptor, putative, SPP1 family. This family describes a small protein of about 100 amino acids found in bacteriophage and in bacterial prophage regions. Examples include gp9 of phage HK022 and gp16 of phage SPP1. This minor structural protein is suggested to be a head-tail adaptor protein (although the source of this annotation was not traced during construction of this model). [Mobile and extrachromosomal element functions, Prophage functions].	4.53265e-07
NZ_CP015338.1\|WP_086231837.1\|1627132_1628233_+\|phage-portal-protein	gnl\|CDD\|273677	TIGR01537, portal_protein, phage portal protein, HK97 family. This model represents one of several distantly related families of phage portal protein. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage head (capsid) and the tail proteins. It functions as a dodecamer of a single polypeptide of average mol. wt. of 40-90 KDa. [Mobile and extrachromosomal element functions, Prophage functions].	1.48368e-64
NZ_CP015338.1\|WP_024855110.1\|1631847_1632813_+\|VIP2-family-actin-ADP-ribosylating-toxin	gnl\|CDD\|367527	pfam03496, ADPrib_exo_Tox, ADP-ribosyltransferase exoenzyme. This is a family of bacterial and viral bi-glutamic acid ADP-ribosyltransferases, where, in Aeromonas salmonicida AexT, E403 is the catalytic residue and E401 contributes to the transfer of ADP-ribose to the target protein. In clostridial species it is actin that is being ADP-ribosylated; this result is lethal and dermonecrotic in infected mammals.	6.71732e-24
NZ_CP015338.1\|WP_086231830.1\|1620824_1622219_+\|virulence-protein	gnl\|CDD\|227832	COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only].	3.61801e-67
NZ_CP015338.1\|WP_086231838.1\|1630015_1630285_+\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	2.45496e-16

>NZ_CP015338.1|WP_157660936.1|1628229_1629765_+|phage-major-capsid-protein
MKQDRRLTIDAELRAQTPQSETPEDGPAENSADPQPKDSQTSKGKTISGYAIVWNSPSKDLGGFTEIVTPKALDGVDLSNVLMLNNHDYTQVLASVKAGTLTLETDDKGLHFIAQLPNTSFANDVYEEVQSGNVDSCSFGFDSDDNTDEWAKDDDGNITRTINQVKSLFDVSVVAVPAYDDTNVQVDTRSYEKFINQEKEPDNMAKQTIIDPNTNEDDNKTGVPAFEAYVRSHGETRDGLNTSGASAVIPKELITPVFQLKQSTYNLAQYATVKQVSSGSGTYPISTSRQSAVLATKEELADIADVNANMFTEVPFDVKTRAGKIALSNEVVEDAEVDIVSEVKAQLQQLVDNTDNTQIMGLLTGTNFAKATATGIDDLKKIFNVTLDPALNKMWLVNQSGFNYLDTLKDSEGRYLLQPNPTAPSGFTLLGAPVVMISDKLLANNADGTFPMIVGDLSQAVAVFRRNQVTAQWDKFDQFSQGLSVIVRNDYEVIDKSAVINVALGTATSGK
>NZ_CP015338.1|WP_086231837.1|1627132_1628233_+|phage-portal-protein
MSIFVKASTTSGTNDPVADALVSLSSNDPYTFVSAAVLRNSDIYAAINIIASDIASNPIVCDTAIFNTTINQNPNSNMDGYHFKYALAANLLLNGNSFAEILPNHTLKLIPNNQLVVEQDDVSGKLTYTYTPTSGTCRQIAPNNILHFKYFTKDGVSGISPLYALKDERQIQSAGNKLLTGFFTAGVHGTTIVKLHQTDLGKEAKENVRKQFDETTTGENAVNTIVTDDGMDISNLPLNTDVLKLVNSNDWTTRQIAKAFGLPPERLGVENDHSNQEQSGVQYLQGTLQHYFDSFTSELSFKLGHDFTFNTDKLLSLDPQTQQAQAVAGFTGGVMSRNEARAKIGLPPTDDGNIFLNLQKNGVTNS
>NZ_CP015338.1|WP_086231836.1|1626923_1627136_+|hypothetical-protein
MRRTNMRTSIMRLQRICSNYLSAILLIMGLILLVVGVGGWLGWYAAIMLAGVSLIVLALLINYEEKEVNP
>NZ_CP015338.1|WP_086231835.1|1625281_1626979_+|terminase-large-subunit
MIEYVDQVLSGEVLAGQKIKWACERFKRDLSRSKETSFPFYYDEEAAAKAVKFIELMPKTDGSQLTMQPFQEWIISELYGWREKATGNRRYDRAFISMARKNGKTYLASGMAANGLLRERQPARNRQVLFVSNALKQAKLGYDMLSSGLRQVRKQSKYMRQRIKVQKQAITDLETDSQALALASDTSTLDGYAGTTVILDEWHEAKDRKVYNVLKSGQAQEDNSLLAVISTSGLNLNVPMHAEYEMLTDVLKGKIEADRYFVAIWELDDREEVYDQANWIKANPLFSEPHVKQRMTEKIQADVDLAIKQNNLIPVLVKNFNMWLQASEDSYISADDWAAGKLNKIPNLRGRDVYIGIDLSKSNDLTAVSWLVPIGNGQFYCDSHSFVGTKYGLDSKIKRDGIDYRSMERAGECSITRLDSGIIDYDALFDYVQQLVGQYNWKVKAVAYDPYNAQTLITKFEKLNYPLFEVRQGTLTLNIPTRNFRDQLYAGHIKHNGNQILAYAVNNAILKVLNNGWQLDKARNSNRIDPIAALINAYVAGMDYYQESEANQHANEYYATATDLF
>NZ_CP015338.1|WP_086231834.1|1624811_1625285_+|phage-terminase-small-subunit-P27-family
MGQKIKQLSTLKKHLTNEERDQRKDAETALFDYPSLDLTPPDWLHDRALTEWQRVSPYLKANTPISELDRALLASYCRAYATIQTCENDIRKNGLVQTNQETGARKPNPYVALQSQAMKDLKSLADDLGMSLSSRARMELNKQKDDAPEDSFEAMLS
>NZ_CP015338.1|WP_086231833.1|1623591_1624002_+|HNH-endonuclease
MAKPMKQCNHAGCRQLVPYDVRYCSKHQHKANAETYHKRMYGEHEGRYQQFYKSSQWRKLSRRFLENNPICVKCYQDGVIRKADVVDHVIELRDDWSRRLDESNLQPLCYRHHNQKTKQAREVRSKEVSAKNGGKA
>NZ_CP015338.1|WP_157660935.1|1623036_1623381_+|phage-head-closure-protein
MKTYDVSRMKHRCQFGVYGDSDEINPNTGVPIQQFVPQFSLWFGEYSQTINQQITLTGDNLTDTKMIVVRHNEQVNQQQLVKIGDTLYRVNNVAGDDEVNSFDVITLVRYQKHG
>NZ_CP015338.1|WP_082265209.1|1622858_1623050_+|hypothetical-protein
MKIKMVHADNMEELFAQVSEVDKAQDIDDELIGTSIDFIKVSDSKMIYCEALVYRTGDDDEDL
>NZ_CP015338.1|WP_086231831.1|1622364_1622844_+|hypothetical-protein
MKWQEMQLLRDTKYSSSENLKKFEDVFQFDKCAVYERPHNLEKLLAGDRSYNAGNKYDTPPYLGDWLDHAELQKVSGTTRIVAIAHDYGPADSVHSKIAEHVLSLDLVGVIFDNKVDWYYPGQSSLVMIMSRETYNYYYYDLLANQHVVDVVKKQYFRE
>NZ_CP015338.1|WP_086231830.1|1620824_1622219_+|virulence-protein
MGKAMDLPAETREAANNVIKMQRDADWQNDFKKNSDDGIKTQSLYNIRLIMEHDEMLKGLVAFDEFSEQIVKTPQADNSLFKKGFWNDGDDTLLRSYIEDHYNLLFSKENITDAVVTEARRKTINPVKARIEAAEWDGQPRAERYFIDYLGAEDNHYTRTITKKWLTGLIARAYVPGVKFEIVPILEGSQGLGKSTAGKNLYPDKFNDSLKGMGKQKDDYQQLQGSWIIEVAELSAMKKTDIEGIKNFISAQSDTYRNSYGRYALPHPRKCVFIGTTNQTDYLKDATGERRFYPIKCGVNKAKLDVWHPDENYMLQLLAEAVYWFRNGEPLYLDQATVKEAKAYQMAAEAVDPMRDAIEAFLAMEVPTDWGKMSTSLKQSYVSDYGQQSKWLQDQVSNERKLLNQTTTREIMEVVFHKTVDRYLTGRTNSEAKRIKLLMDNMDGWKSQRIRMNGQRLHGYMREV
>NZ_CP015338.1|WP_086231838.1|1630015_1630285_+|phage-gp6-like-head-tail-connector-protein
MAVTVDDIKTSLRLDLTEDDTLIQGYLDAAKEYIQTAVSTTAGLTQYKQYDFAVSLLTQFWYQNRVVDMKQTPYQVVSMIQQLRGLTSE
>NZ_CP015338.1|WP_086231839.1|1630457_1630829_+|hypothetical-protein
MRQDIKKIRNLLKEYAKLKQEIRTFNQVSSPVLSVAPSHSCGNGVETSLINYVDLSYQLKEVDDALNAIHNPQYQFILHDYIIEKRFTRSEACERLSVSVSKFNYMKNCALELFRVAYIELKC
>NZ_CP015338.1|WP_042522391.1|1630947_1631148_+|cold-shock-protein
MQNGTVKWFNADKGFGFITGSDDKDVFVHFSAIQTDGFKSLDDGQKVSYDVEQGDRGPQATNVVPQ
>NZ_CP015338.1|WP_024855110.1|1631847_1632813_+|VIP2-family-actin-ADP-ribosylating-toxin
MLRKLGLSLIVIGGVLTIGTKNVNAASFASGDSIVSMTTRNNYIHDSKYRYLVTKKNAIAYKAIGKAPDYTASVSISKNVPLTVRQTVEGGHIVTEPQSTDKLFLSNDKQFVYSSDVKSLSKKQIKVLAKDSKKWSSKIGKKSVQAVGYYTGDGYEKINGYLRNGKGQKKVVKKAQLVQKGISKFKLRYNTTVYRGISNKGLKLSLNNRGLSVGSIYQDKAFSSTSLSKQVALGFSSQCLLRINIPAGFHGAYIDPISKNKGEKEYLLKEGQKLIVTKIQNVSYTEATKMYLIKNKGSKVVQHTTNNVKGNYKLITLNLLN
>NZ_CP015338.1|WP_011667983.1|1632951_1634055_-|anion-permease
MKAVTTRILHDKVLWIAAVAAGLSLFVGRPQIHDINWTTIWSLLALMVCVQLLNSYHVLDQLSQQLLTHSHNQRQIVQYTVLLAFVGAMFLTNDVAILTLFPMYIRLAHQQHLPIAFPTTLIVLAANLGSAFTPFGNPQNLFLVAHYHIDGLAFLKLSTPLMLIGLFSLAGLTYGIAPRSTKAAPTRLFPQHPGKIALTILLFGLTLLGIFQIFPLGWITVIVIISGWLLNRAAIKQVDYGLLLTFICFFILVSSFSHNATLTTLIAHVTHTPVASYLTGLTISQVISNVPATVLLANFTNHLTALYWGVNLGGLGTLVASLANLLALKQLLFLTNRPTVREFFKVFTLVNLGLLVVLGTIGYYWIR
>NZ_CP015338.1|WP_024855109.1|1634124_1634787_-|EAL-domain-containing-protein
MYRYFLQPQIDVLNNSLIGYEMLIRQQIDDKWVLPHDFASIPIDVQADLIQRTAQKLILKIGSVSYNVNRSQFIDPTIAQAIIDAQQQIYPITLVLEVTEEITDKAISTQQLIDQVHYFDEHGIQLSLDDVGTGVNTYDHLEPVLSYASEIKFAMQNFRQEDRADEIPDNLKFWKKIAEEYKLRLILEGVENQAEHDMANRLQIDLRQGWFYGKPHLFKL
>NZ_CP015338.1|WP_011667980.1|1635391_1636321_+|IS30-like-element-ISLpl1-family-transposase
MSSITYSERIKIETFCELGLSNIQMGVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSRCGRKTKLSDGLKQTILNHLRLSWSPGMIAHEFKLATKSIYNWLNQGRIGFSLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMINQRNRIGDFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNEALTKFLTTFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTPYQVMLTNLSKNSD
>NZ_CP015338.1|WP_051464043.1|1636328_1637192_+|GGDEF-domain-containing-protein
MYHFLQLKIPYWLVFVVAIGFMLMNGNVTAPLSWVFTLVFVGFYVVAYQHSIHLWRWPYPRYILVALSFGMVLWLLVKMRFHLPWVTYWIEMADYAFLATLMYGYFKIQDKDRRIKDRLFQSANWDALTHVQNYAAYDRAIGYHFSRSLIRHNNLTMAMFDIDHFKCVNDTYGHLAGDEVLKQVSSTVVDVLKAKDEQIVLYRTGGEEFNVIFPGYTVAQAQPLVQEFFDRVKALRIPYNDVELNVTISVGVSSLHRTDHNPLDFYKRVDSHLYRSKKMGRQQITLE
>NZ_CP015338.1|WP_011667978.1|1637270_1637477_+|hypothetical-protein
MILLLLLLLLLFPLLRLVFGLAGWLLGLVGTLIIGAIVLVAFAAIFRFLIVAVLVVGGGLWISRGLFS
>NZ_CP015338.1|WP_011667977.1|1637523_1637853_-|hypothetical-protein
MASNSDSIYNVLTYIHRHQDRVRFIRQRNSNVIAIGVPDTVPVANPEIYFPVGHLLVNRMDNDFLAKHGELLNDFFARTNSSKLDYQEVWITTSYIKNAQTYLVELSFE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015338_1	1.2\|793788\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793788-793820	33	MN830254	Lactobacillus phage JNU_P2, complete genome	17234-17266	1	0.97
NZ_CP015338_1	1.2\|793788\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793788-793820	33	MN830255	Lactobacillus phage JNU_P4, complete genome	3757-3789	1	0.97
NZ_CP015338_1	1.5\|793971\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793971-794003	33	NZ_CP014920	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-5, complete sequence	5729-5761	1	0.97
NZ_CP015338_1	1.3\|793849\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793849-793881	33	NZ_CP014917	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence	23424-23456	2	0.939
NZ_CP015338_1	1.5\|793971\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793971-794003	33	MK496698	Capybara microvirus Cap1_SP_87, complete genome	2934-2966	7	0.788
NZ_CP015338_1	1.5\|793971\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793971-794003	33	NC_017296	Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence	62340-62372	7	0.788
NZ_CP015338_1	1.5\|793971\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793971-794003	33	NC_015686	Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence	62340-62372	7	0.788
NZ_CP015338_1	1.5\|793971\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793971-794003	33	NC_001988	Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence	62340-62372	7	0.788
NZ_CP015338_1	1.1\|793727\|33\|NZ_CP015338\|CRISPRCasFinder,CRT	793727-793759	33	KY979109	Salmonella phage SHP1, complete genome	32802-32834	8	0.758
NZ_CP015338_1	1.1\|793727\|33\|NZ_CP015338\|CRISPRCasFinder,CRT	793727-793759	33	NC_019500	Enterobacteria phage Bp7, complete genome	22258-22290	8	0.758
NZ_CP015338_2	2.2\|1629880\|33\|NZ_CP015338\|CRISPRCasFinder	1629880-1629912	33	NC_002669	Lactococcus prophage bIL310, complete genome	2468-2500	8	0.758
NZ_CP015338_2	2.2\|1629880\|33\|NZ_CP015338\|CRISPRCasFinder	1629880-1629912	33	AF323671	Bacteriophage bIL310, complete genome	2468-2500	8	0.758
NZ_CP015338_1	1.5\|793971\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793971-794003	33	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	89325-89357	10	0.697
NZ_CP015338_1	1.5\|793971\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793971-794003	33	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	98643-98675	10	0.697
NZ_CP015338_1	1.5\|793971\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793971-794003	33	NZ_LR214978	Mycoplasma cynos strain NCTC10142 plasmid 5	6-38	10	0.697
NZ_CP015338_1	1.5\|793971\|33\|NZ_CP015338\|CRISPRCasFinder,CRT,PILER-CR	793971-794003	33	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	771862-771894	10	0.697

1. spacer 1.2|793788|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to MN830254 (Lactobacillus phage JNU_P2, complete genome) position: , mismatch: 1, identity: 0.97

tgacaaccaaaaaatatacgactttaacttctg	CRISPR spacer
tggcaaccaaaaaatatacgactttaacttctg	Protospacer
**.******************************

2. spacer 1.2|793788|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to MN830255 (Lactobacillus phage JNU_P4, complete genome) position: , mismatch: 1, identity: 0.97

tgacaaccaaaaaatatacgactttaacttctg	CRISPR spacer
tggcaaccaaaaaatatacgactttaacttctg	Protospacer
**.******************************

3. spacer 1.5|793971|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014920 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-5, complete sequence) position: , mismatch: 1, identity: 0.97

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gatgaataagaaaagaaaacaagataatacgca	Protospacer
**********************.**********

4. spacer 1.3|793849|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014917 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence) position: , mismatch: 2, identity: 0.939

cggaaagtttaaatctattaaagacgcacaata	CRISPR spacer
cggaaagttcaaatctattaaggacgcacaata	Protospacer
*********.***********.***********

5. spacer 1.5|793971|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to MK496698 (Capybara microvirus Cap1_SP_87, complete genome) position: , mismatch: 7, identity: 0.788

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gatgaataataaaagaaaataaaataaactaaa	Protospacer
********* *********.*******  .. *

6. spacer 1.5|793971|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 7, identity: 0.788

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gaataataagaaaagaaaaacaaataatataaa	Protospacer
**  ***************  ********.. *

7. spacer 1.5|793971|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 7, identity: 0.788

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gaataataagaaaagaaaaacaaataatataaa	Protospacer
**  ***************  ********.. *

8. spacer 1.5|793971|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 7, identity: 0.788

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gaataataagaaaagaaaaacaaataatataaa	Protospacer
**  ***************  ********.. *

9. spacer 1.1|793727|33|NZ_CP015338|CRISPRCasFinder,CRT matches to KY979109 (Salmonella phage SHP1, complete genome) position: , mismatch: 8, identity: 0.758

gcttaaaatcaagcagtcgttgggctacgtcaa	CRISPR spacer
tcttaacatcaagcagtcgtttggcattatcac	Protospacer
 ***** ************** ***  ..***

10. spacer 1.1|793727|33|NZ_CP015338|CRISPRCasFinder,CRT matches to NC_019500 (Enterobacteria phage Bp7, complete genome) position: , mismatch: 8, identity: 0.758

gcttaaaatcaagcagtcgttgggctacgtcaa	CRISPR spacer
tcttaacatcaagcagtcgtttggcattatcac	Protospacer
 ***** ************** ***  ..***

11. spacer 2.2|1629880|33|NZ_CP015338|CRISPRCasFinder matches to NC_002669 (Lactococcus prophage bIL310, complete genome) position: , mismatch: 8, identity: 0.758

accgttatgggtctgagccataacgaatttgga	CRISPR spacer
attgttatgggtttgagccataacaaaatgata	Protospacer
*..*********.***********.** * . *

12. spacer 2.2|1629880|33|NZ_CP015338|CRISPRCasFinder matches to AF323671 (Bacteriophage bIL310, complete genome) position: , mismatch: 8, identity: 0.758

accgttatgggtctgagccataacgaatttgga	CRISPR spacer
attgttatgggtttgagccataacaaaatgata	Protospacer
*..*********.***********.** * . *

13. spacer 1.5|793971|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 10, identity: 0.697

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gtattataagaaaagaaaaaagaataataaaag	Protospacer
*    ************** *.******* . .

14. spacer 1.5|793971|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 10, identity: 0.697

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gtattataagaaaagaaaaaagaataataaaag	Protospacer
*    ************** *.******* . .

15. spacer 1.5|793971|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214978 (Mycoplasma cynos strain NCTC10142 plasmid 5) position: , mismatch: 10, identity: 0.697

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
atagaataagaaaagaaaacaacaaaaacatta	Protospacer
.  ******************* * **    .*

16. spacer 1.5|793971|33|NZ_CP015338|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 10, identity: 0.697

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
atagaataagaaaagaaaacaacaaaaacatta	Protospacer
.  ******************* * **    .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3349 : 15595

Lactobacillus_phage(83.33%)

integrase

attL 9377:9390|attR 19146:19159

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_191981961.1\|3349_3787_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	5.5e-78	99.3
WP_086231630.1\|4006_4306_-	hypothetical protein	NA	NA	NA	NA
WP_191981957.1\|4390_4585_-	hypothetical protein	NA	NA	NA	NA
WP_086231631.1\|4737_5166_-	hypothetical protein	D6PSU8	Lactobacillus_phage	4.0e-25	65.9
WP_086231632.1\|5320_5725_-	RusA family crossover junction endodeoxyribonuclease	D6PSU4	Lactobacillus_phage	6.9e-43	60.4
WP_086231633.1\|5717_6428_-	antA/AntB antirepressor family protein	A0A059NT90	Lactococcus_phage	8.2e-31	34.7
WP_086231634.1\|6439_6916_-	hypothetical protein	NA	NA	NA	NA
WP_086231635.1\|6912_7854_-	DUF4373 domain-containing protein	D6PSU3	Lactobacillus_phage	6.0e-13	80.4
WP_086231636.1\|7865_8729_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A0P0IZH9	Lactobacillus_phage	2.3e-75	49.5
WP_086231637.1\|8655_9717_-	recombinase RecT	D7RWF9	Brochothrix_phage	2.4e-58	49.8
9377:9390	attL	NA	NA	NA	NA
WP_015474119.1\|9717_9933_-	hypothetical protein	NA	NA	NA	NA
WP_086231638.1\|9923_10217_-	hypothetical protein	NA	NA	NA	NA
WP_157660924.1\|10326_10503_-	hypothetical protein	NA	NA	NA	NA
WP_086231639.1\|10515_10848_-	DUF771 domain-containing protein	E9LUT3	Lactobacillus_phage	4.2e-22	52.1
WP_086231640.1\|10852_11350_-	hypothetical protein	D6PST4	Lactobacillus_phage	5.0e-51	60.6
WP_157660925.1\|11412_11583_-	hypothetical protein	NA	NA	NA	NA
WP_086231641.1\|11738_11987_+	hypothetical protein	NA	NA	NA	NA
WP_086231642.1\|11975_12161_-	hypothetical protein	NA	NA	NA	NA
WP_051053383.1\|12160_12418_-	helix-turn-helix transcriptional regulator	D6PST0	Lactobacillus_phage	3.3e-38	97.6
WP_086231926.1\|12971_13358_+	ImmA/IrrE family metallo-endopeptidase	D6PSS8	Lactobacillus_phage	2.4e-69	96.1
WP_086231643.1\|13456_14302_+	hypothetical protein	NA	NA	NA	NA
WP_086231644.1\|14452_15595_+\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	1.1e-85	45.7
19146:19159	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1617370 : 1629765

Lactobacillus_phage(28.57%)

terminase,integrase,portal,head,capsid

attL 1611826:1611841|attR 1634837:1634852

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1611826:1611841	attL	NA	NA	NA	NA
WP_086231826.1\|1617370_1618528_-\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	2.2e-65	36.8
WP_086231827.1\|1618585_1619197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_179205441.1\|1619354_1619531_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_082265205.1\|1619785_1620013_+	hypothetical protein	NA	NA	NA	NA
WP_086231829.1\|1620024_1620825_+	bifunctional DNA primase/polymerase	NA	NA	NA	NA
WP_086231830.1\|1620824_1622219_+	virulence protein	A0A0A7RTG3	Clostridium_phage	1.9e-68	34.3
WP_086231831.1\|1622364_1622844_+	hypothetical protein	NA	NA	NA	NA
WP_082265209.1\|1622858_1623050_+	hypothetical protein	NA	NA	NA	NA
WP_157660935.1\|1623036_1623381_+\|head	phage head closure protein	E9LUQ5	Lactobacillus_phage	1.7e-13	38.9
WP_086231833.1\|1623591_1624002_+	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	9.2e-19	44.0
WP_086231834.1\|1624811_1625285_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_086231835.1\|1625281_1626979_+\|terminase	terminase large subunit	A0A2H4JBN3	uncultured_Caudovirales_phage	7.5e-123	40.9
WP_086231836.1\|1626923_1627136_+	hypothetical protein	NA	NA	NA	NA
WP_086231837.1\|1627132_1628233_+\|portal	phage portal protein	A0A2H4J9Q5	uncultured_Caudovirales_phage	1.3e-46	33.4
WP_157660936.1\|1628229_1629765_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	7.4e-45	25.7
1634837:1634852	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2041522 : 2050754

Staphylococcus_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086231876.1\|2041522_2042374_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.7e-14	33.6
WP_015473764.1\|2042542_2043184_+	hemolysin III family protein	NA	NA	NA	NA
WP_024855005.1\|2043339_2043831_-	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	1.5e-23	37.8
WP_015473768.1\|2043847_2044798_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	2.0e-117	62.1
WP_011667557.1\|2044809_2046702_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	6.1e-49	29.3
WP_024855004.1\|2046730_2047924_-\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	1.9e-35	40.2
WP_042254316.1\|2048099_2048996_+	YitT family protein	M1Q1P6	Streptococcus_phage	1.6e-52	38.8
WP_047021281.1\|2049113_2050373_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011667553.1\|2050478_2050754_-	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	3.1e-26	68.5

DBSCAN-SWA_4

2311693 : 2337323

Lactobacillus_phage(100.0%)

plate,tail,terminase,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060416794.1\|2311693_2312212_-	hypothetical protein	D6PSS1	Lactobacillus_phage	1.1e-80	93.0
WP_086231901.1\|2312223_2312427_-	hypothetical protein	NA	NA	NA	NA
WP_157660939.1\|2312459_2312849_-	hypothetical protein	A0A0P0IV33	Lactobacillus_phage	3.4e-23	43.4
WP_125692929.1\|2312860_2313028_-	XkdX family protein	NA	NA	NA	NA
WP_086231903.1\|2313039_2313468_-	hypothetical protein	NA	NA	NA	NA
WP_086231904.1\|2313493_2315170_-	hypothetical protein	NA	NA	NA	NA
WP_086231905.1\|2315172_2315832_-	hypothetical protein	D6PT00	Lactobacillus_phage	5.6e-74	83.6
WP_086231906.1\|2315821_2317000_-\|plate	baseplate J/gp47 family protein	D6PSZ9	Lactobacillus_phage	8.4e-182	82.4
WP_086231907.1\|2316986_2317385_-	DUF2634 domain-containing protein	D6PSZ8	Lactobacillus_phage	3.2e-48	78.4
WP_157660940.1\|2317384_2317609_-	hypothetical protein	D6PSZ7	Lactobacillus_phage	4.7e-33	97.3
WP_191981955.1\|2317728_2319003_-	hypothetical protein	D6PSZ6	Lactobacillus_phage	5.2e-185	83.3
WP_191981956.1\|2318959_2319352_-	hypothetical protein	D6PSZ5	Lactobacillus_phage	5.1e-67	97.7
WP_086231911.1\|2319363_2320011_-	LysM peptidoglycan-binding domain-containing protein	D6PSZ4	Lactobacillus_phage	1.4e-106	91.2
WP_086231912.1\|2320010_2325761_-\|tail	phage tail tape measure protein	D6PSY9	Lactobacillus_phage	2.0e-159	94.5
WP_155275711.1\|2325775_2325946_-	hypothetical protein	D6PSY6	Lactobacillus_phage	8.7e-24	98.1
WP_086231913.1\|2325956_2326331_-	hypothetical protein	D6PSY5	Lactobacillus_phage	4.1e-66	97.6
WP_085763037.1\|2326401_2326800_-	hypothetical protein	D6PSY4	Lactobacillus_phage	3.1e-72	99.2
WP_086231914.1\|2326814_2327852_-	DUF3383 family protein	D6PSY3	Lactobacillus_phage	1.9e-137	92.5
WP_069360084.1\|2327864_2328335_-	hypothetical protein	D6PSY2	Lactobacillus_phage	2.3e-61	98.3
WP_086231915.1\|2328327_2328702_-	hypothetical protein	D6PSY1	Lactobacillus_phage	1.3e-64	94.4
WP_086231916.1\|2328701_2329304_-	hypothetical protein	D6PSY0	Lactobacillus_phage	1.3e-98	88.9
WP_086231917.1\|2329300_2329627_-	DUF4054 domain-containing protein	D6PSX9	Lactobacillus_phage	5.0e-52	95.4
WP_086231918.1\|2329638_2330001_-	hypothetical protein	D6PSX8	Lactobacillus_phage	1.4e-58	98.3
WP_086231919.1\|2330011_2330890_-	encapsulin	D6PSX7	Lactobacillus_phage	2.3e-160	98.6
WP_086231920.1\|2330904_2331369_-	hypothetical protein	D6PSX6	Lactobacillus_phage	1.9e-76	98.1
WP_086231921.1\|2331383_2332487_-	DUF2213 domain-containing protein	D6PSX5	Lactobacillus_phage	2.7e-158	89.9
WP_069360079.1\|2332498_2332768_-	LysM peptidoglycan-binding domain-containing protein	D6PSX4	Lactobacillus_phage	1.6e-24	97.8
WP_069360078.1\|2332790_2333618_-\|capsid	minor capsid protein	D6PSX3	Lactobacillus_phage	3.4e-129	96.3
WP_069360077.1\|2333620_2334982_-	DUF1073 domain-containing protein	D6PSX2	Lactobacillus_phage	4.0e-260	98.9
WP_069360076.1\|2334998_2336336_-\|terminase	terminase	D6PSX1	Lactobacillus_phage	1.8e-167	99.3
WP_086231922.1\|2336319_2337075_-	TerS	D6PSW8	Lactobacillus_phage	6.1e-109	90.8
WP_086231923.1\|2337116_2337323_-	hypothetical protein	D6PSW6	Lactobacillus_phage	2.2e-21	94.1

DBSCAN-SWA_5

2341257 : 2351266

Lactobacillus_phage(81.82%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_191981961.1\|2341257_2341695_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	5.5e-78	99.3
WP_086231630.1\|2341914_2342214_-	hypothetical protein	NA	NA	NA	NA
WP_191981957.1\|2342298_2342493_-	hypothetical protein	NA	NA	NA	NA
WP_086231631.1\|2342645_2343074_-	hypothetical protein	D6PSU8	Lactobacillus_phage	4.0e-25	65.9
WP_086231632.1\|2343228_2343633_-	RusA family crossover junction endodeoxyribonuclease	D6PSU4	Lactobacillus_phage	6.9e-43	60.4
WP_086231633.1\|2343625_2344336_-	antA/AntB antirepressor family protein	A0A059NT90	Lactococcus_phage	8.2e-31	34.7
WP_086231634.1\|2344347_2344824_-	hypothetical protein	NA	NA	NA	NA
WP_086231635.1\|2344820_2345762_-	DUF4373 domain-containing protein	D6PSU3	Lactobacillus_phage	6.0e-13	80.4
WP_086231636.1\|2345773_2346637_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A0P0IZH9	Lactobacillus_phage	2.3e-75	49.5
WP_086231637.1\|2346563_2347625_-	recombinase RecT	D7RWF9	Brochothrix_phage	2.4e-58	49.8
WP_015474119.1\|2347625_2347841_-	hypothetical protein	NA	NA	NA	NA
WP_086231638.1\|2347831_2348125_-	hypothetical protein	NA	NA	NA	NA
WP_157660924.1\|2348234_2348411_-	hypothetical protein	NA	NA	NA	NA
WP_086231639.1\|2348423_2348756_-	DUF771 domain-containing protein	E9LUT3	Lactobacillus_phage	4.2e-22	52.1
WP_086231640.1\|2348760_2349258_-	hypothetical protein	D6PST4	Lactobacillus_phage	5.0e-51	60.6
WP_157660925.1\|2349320_2349491_-	hypothetical protein	NA	NA	NA	NA
WP_086231641.1\|2349646_2349895_+	hypothetical protein	NA	NA	NA	NA
WP_086231642.1\|2349883_2350069_-	hypothetical protein	NA	NA	NA	NA
WP_051053383.1\|2350068_2350326_-	helix-turn-helix transcriptional regulator	D6PST0	Lactobacillus_phage	3.3e-38	97.6
WP_086231926.1\|2350879_2351266_+	ImmA/IrrE family metallo-endopeptidase	D6PSS8	Lactobacillus_phage	2.4e-69	96.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP015341

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2527 : 37100

Lactobacillus_phage(94.59%)

terminase,holin,tail,head,portal,integrase,protease,capsid

attL 2280:2294|attR 36413:36427

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2280:2294	attL	NA	NA	NA	NA
WP_013355624.1\|2527_4300_+\|tail	phage tail family protein	A0A2P0ZLH2	Lactobacillus_phage	7.9e-309	91.9
WP_013355623.1\|4368_6783_+\|tail	phage tail protein	A0A2P0ZLF8	Lactobacillus_phage	0.0e+00	91.3
WP_013355622.1\|6799_9346_+\|tail	tail fiber protein	A0A2K9VDD0	Lactobacillus_phage	3.0e-248	80.6
WP_013355621.1\|9338_9590_+	hypothetical protein	A0A2K9VDF6	Lactobacillus_phage	2.4e-30	98.6
WP_003644513.1\|9593_9755_+	hypothetical protein	A0A2P0ZLG1	Lactobacillus_phage	9.5e-20	100.0
WP_013355620.1\|9738_10098_+	hypothetical protein	A0A2P0ZLF6	Lactobacillus_phage	5.9e-46	80.7
WP_013355619.1\|10109_11282_+	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	1.2e-199	89.5
WP_003644510.1\|11281_11545_+	hemolysin XhlA family protein	E9LUR9	Lactobacillus_phage	2.0e-38	100.0
WP_013355618.1\|11557_12088_+\|holin	holin	E9LUS0	Lactobacillus_phage	6.3e-36	98.8
WP_013355651.1\|12999_14163_-\|integrase	site-specific integrase	E9LUK6	Lactobacillus_phage	1.0e-62	37.1
WP_003644558.1\|14330_14645_-	hypothetical protein	NA	NA	NA	NA
WP_003644557.1\|14828_15086_-	hypothetical protein	A0A2P0ZL96	Lactobacillus_phage	1.0e-31	76.2
WP_003644556.1\|15211_15388_-	hypothetical protein	A0A2P0ZL93	Lactobacillus_phage	7.2e-21	86.2
WP_013355648.1\|16642_17521_-	HIRAN domain-containing protein	A0A2H4J549	uncultured_Caudovirales_phage	3.0e-06	34.8
WP_003641360.1\|17583_17973_-	ImmA/IrrE family metallo-endopeptidase	D6PSS8	Lactobacillus_phage	4.6e-36	54.3
WP_003641361.1\|18003_18330_-	helix-turn-helix transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	1.1e-25	52.4
WP_003644552.1\|18586_18802_+	hypothetical protein	NA	NA	NA	NA
WP_013355646.1\|18814_19567_+	phage repressor protein/antirepressor Ant	E9LUT0	Lactobacillus_phage	2.2e-58	96.5
WP_003644550.1\|19577_19781_+	hypothetical protein	NA	NA	NA	NA
WP_003644549.1\|19777_20134_-	hypothetical protein	NA	NA	NA	NA
WP_003644548.1\|20191_20452_+	hypothetical protein	NA	NA	NA	NA
WP_003641368.1\|21045_21336_-	hypothetical protein	NA	NA	NA	NA
WP_003641369.1\|21501_21705_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016511003.1\|21717_21966_+	hypothetical protein	E9LUT6	Lactobacillus_phage	2.3e-28	75.0
WP_003641371.1\|21968_22169_+	hypothetical protein	E9LUT7	Lactobacillus_phage	1.0e-26	89.4
WP_013355645.1\|22180_22333_+	hypothetical protein	E9LUT8	Lactobacillus_phage	8.7e-07	62.5
WP_013355644.1\|22454_22625_+	hypothetical protein	NA	NA	NA	NA
WP_033098960.1\|22624_22882_+	hypothetical protein	NA	NA	NA	NA
WP_013355643.1\|22983_23781_+	hypothetical protein	Q9AZA0	Lactobacillus_prophage	4.2e-52	69.0
WP_013355642.1\|23780_24566_+	ATP-binding protein	E9LUN6	Lactobacillus_phage	2.7e-144	98.1
WP_013355641.1\|24701_25010_+	hypothetical protein	E9LUN7	Lactobacillus_phage	3.2e-48	94.1
WP_013355640.1\|25284_25713_+	transcriptional regulator	E9LUP5	Lactobacillus_phage	2.9e-63	82.4
WP_033098961.1\|26382_27195_+	hypothetical protein	NA	NA	NA	NA
WP_013355638.1\|27354_27525_+	hypothetical protein	E9LUP6	Lactobacillus_phage	3.3e-23	96.4
WP_013355637.1\|27535_28006_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	4.8e-80	91.0
WP_013355636.1\|28011_28281_+	hypothetical protein	NA	NA	NA	NA
WP_013355635.1\|28298_28550_+	hypothetical protein	NA	NA	NA	NA
WP_016511011.1\|28739_29195_+\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	3.0e-79	96.7
WP_013355633.1\|29204_31103_+\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	0.0e+00	92.4
WP_003644528.1\|31092_31287_+	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	7.4e-27	98.4
WP_013355632.1\|31289_32483_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	1.3e-222	98.0
WP_013355631.1\|32460_33216_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	1.5e-123	93.2
WP_013355630.1\|33215_34448_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	4.5e-210	92.6
WP_013355629.1\|34520_34853_+\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	3.4e-48	91.7
WP_016511016.1\|34842_35190_+\|head	phage head closure protein	A0A2P0ZLF0	Lactobacillus_phage	2.0e-43	73.0
WP_013355628.1\|35192_35600_+	HK97 gp10 family phage protein	A0A2P0ZLE6	Lactobacillus_phage	2.9e-65	93.8
WP_013355627.1\|35599_35980_+	DUF806 family protein	A0A2P0ZLF4	Lactobacillus_phage	4.5e-60	92.1
WP_063730288.1\|35995_36649_+\|tail	phage tail protein	A0A2P0ZLH1	Lactobacillus_phage	1.6e-110	93.5
36413:36427	attR	NA	NA	NA	NA
WP_003644520.1\|36725_37100_+\|tail	phage tail assembly chaperone	A0A2P0ZLH4	Lactobacillus_phage	3.2e-58	96.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015338

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP015341

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection