CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP020834	Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence	0 crisprs	csa3	0	0	1	0
NZ_CP020833	Listeria monocytogenes strain CFSAN004330 chromosome, complete genome	3 crisprs	DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,csa3,csn2,cas9	9	26	6	3

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5237 : 24908

Streptococcus_phage(55.56%)

transposase,integrase

attL 5972:5990|attR 12490:12508

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003726384.1\|5237_5918_-\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	1.2e-92	69.0
5972:5990	attL	NA	NA	NA	NA
WP_023558764.1\|5977_6481_+\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	6.6e-19	35.9
WP_003726381.1\|7125_9243_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.3e-235	62.6
WP_003726380.1\|9239_9599_-	winged helix-turn-helix transcriptional regulator	E4ZFI8	Streptococcus_phage	5.4e-23	48.2
WP_003725299.1\|9872_10472_-	recombinase family protein	I1ZBD6	Salisaeta_icosahedral_phage	1.8e-15	31.8
WP_003725298.1\|10630_12067_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JGQ6	uncultured_Caudovirales_phage	9.4e-18	24.8
WP_003725297.1\|12059_12563_+	AAA family ATPase	NA	NA	NA	NA
12490:12508	attR	NA	NA	NA	NA
WP_002319817.1\|12562_13243_+\|transposase	IS6-like element ISS1N family transposase	A0A1X9I6C6	Streptococcus_phage	2.5e-109	84.1
WP_102135615.1\|13246_14629_+	TraM recognition domain-containing protein	NA	NA	NA	NA
WP_023559429.1\|14647_14872_+	hypothetical protein	NA	NA	NA	NA
WP_023559430.1\|14861_16475_+	DUF1738 domain-containing protein	NA	NA	NA	NA
WP_077310416.1\|16544_16715_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_003725294.1\|17325_17865_+	efflux transporter transcriptional regulator BcrA	NA	NA	NA	NA
WP_003725293.1\|17876_18194_+	quaternary ammonium compound efflux SMR transporter BcrB	NA	NA	NA	NA
WP_003725292.1\|18211_18556_+	quaternary ammonium compound efflux SMR transporter BcrC	NA	NA	NA	NA
WP_003725288.1\|19481_19838_+	glyoxalase	NA	NA	NA	NA
WP_003725287.1\|20233_21097_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003725286.1\|21336_21846_+	hypothetical protein	NA	NA	NA	NA
WP_003750115.1\|21916_22105_+	hypothetical protein	NA	NA	NA	NA
WP_003725285.1\|22105_23050_+	AAA domain-containing protein	A7KV75	Bacillus_phage	9.2e-46	36.8
WP_002389568.1\|24227_24908_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	2.6e-119	90.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP020833

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP020833_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020833_1

557491-557710

Unclear

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAAT	CRISPRCasFinder

3 spacers

cas6,cas8b2

The CRISPR arrays of NZ_CP020833_1

>merge|NZ_CP020833|1|557491-557710|CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAATGTAAATGGACTCCTCAGTCATGATGAAGGGATTACCTTTGAAAGTTTTAGTTACTTAATGTGAAATATAAATTTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATTGTTTACTTACTCATTGTGAATTGGTAAATGCAGAAACAGCAAAATAACCAAAAGTAATGACTTTCGTTTTAATTTCTTAAGATGAAAT

>NZ_CP020833|1|1|557491-557710|CRISPRCasFinder
GTTTTAGTTACTTATTGTGAAAT	GTAAATGGACTCCTCAGTCATGATGAAGGGATTACCTTTGAAA
GTTTTAGTTACTTAATGTGAAAT	ATAAATTTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTAT
TGTTTACTTACTCATTGTGAATT	GGTAAATGCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC
GTTTTAATTTCTTAAGATGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020833.1\|WP_085400123.1\|566441_568130_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_CP020833.1\|WP_014600551.1\|562984_564415_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CP020833.1\|WP_003721303.1\|564535_565351_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP020833.1\|WP_003721294.1\|555006_556278_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP020833.1\|WP_014601716.1\|552989_553640_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP020833.1\|WP_003733190.1\|556417_557353_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP020833.1\|WP_009924745.1\|552580_552979_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020833.1\|WP_003733192.1\|551466_552069_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_CP020833.1\|WP_085400111.1\|549402_551463_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP020833.1\|WP_003733187.1\|559730_560189_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP020833.1\|WP_003733191.1\|552096_552564_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP020833.1\|WP_003721297.1\|558659_559340_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP020833.1\|WP_003721293.1\|554698_554992_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CP020833.1\|WP_003721301.1\|562506_562938_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP020833.1\|WP_003721298.1\|559364_559724_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CP020833.1\|WP_003730559.1\|553636_554683_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CP020833.1\|WP_085400114.1\|557974_558553_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020833.1\|WP_085400120.1\|565703_566426_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP020833.1\|WP_085400117.1\|560570_562406_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_CP020833.1\|WP_012951243.1\|548643_549294_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254

Protein	Function_ID	Function_description	E-value
NZ_CP020833.1\|WP_085400123.1\|566441_568130_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	6.67144e-26
NZ_CP020833.1\|WP_014600551.1\|562984_564415_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	9.64038e-100
NZ_CP020833.1\|WP_003721303.1\|564535_565351_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP020833.1\|WP_003721294.1\|555006_556278_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_CP020833.1\|WP_014601716.1\|552989_553640_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	5.38202e-108
NZ_CP020833.1\|WP_003733190.1\|556417_557353_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.26262e-153
NZ_CP020833.1\|WP_003721298.1\|559364_559724_-\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_CP020833.1\|WP_085400111.1\|549402_551463_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	6.15901e-80
NZ_CP020833.1\|WP_003733192.1\|551466_552069_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
NZ_CP020833.1\|WP_003733191.1\|552096_552564_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
NZ_CP020833.1\|WP_003721297.1\|558659_559340_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_CP020833.1\|WP_003721293.1\|554698_554992_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_CP020833.1\|WP_003721301.1\|562506_562938_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_CP020833.1\|WP_003730559.1\|553636_554683_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_CP020833.1\|WP_003733187.1\|559730_560189_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	1.03599e-12
NZ_CP020833.1\|WP_085400120.1\|565703_566426_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.69341e-31
NZ_CP020833.1\|WP_085400117.1\|560570_562406_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	1.38724e-119
NZ_CP020833.1\|WP_012951243.1\|548643_549294_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.0547e-61

>NZ_CP020833.1|WP_003733190.1|556417_557353_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CP020833.1|WP_003721294.1|555006_556278_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_CP020833.1|WP_003721293.1|554698_554992_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_CP020833.1|WP_003730559.1|553636_554683_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEQPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_CP020833.1|WP_014601716.1|552989_553640_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNAELAKECTLAGADLIVVGSYLFEGDIEANLEKLSKGVLTE
>NZ_CP020833.1|WP_009924745.1|552580_552979_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMFVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_CP020833.1|WP_003733191.1|552096_552564_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_CP020833.1|WP_003733192.1|551466_552069_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_CP020833.1|WP_085400111.1|549402_551463_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANIATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKNMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_CP020833.1|WP_012951243.1|548643_549294_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALVGADFVAPYVNRMSAANIDPFKEIRQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYLQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_CP020833.1|WP_085400114.1|557974_558553_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDCKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_CP020833.1|WP_003721297.1|558659_559340_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_CP020833.1|WP_003721298.1|559364_559724_-|hypothetical-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_CP020833.1|WP_003733187.1|559730_560189_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTAAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_CP020833.1|WP_085400117.1|560570_562406_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSINNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSARLSITEDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVNPVPPTPEVKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_CP020833.1|WP_003721301.1|562506_562938_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_CP020833.1|WP_014600551.1|562984_564415_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_CP020833.1|WP_003721303.1|564535_565351_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP020833.1|WP_085400120.1|565703_566426_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALISLRGSKVLFGAGNNITIKNIQIVPEKKIIGNRTILRTLSPMVSRDHNRETFKNWFYSFEDEEFEPTLKRNILPYLIDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELETEAYLQKYLVENGLGTMTGSGFGMIEQL
>NZ_CP020833.1|WP_085400123.1|566441_568130_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDKFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYIQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGIEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSANGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK

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Crispr_ID: NZ_CP020833_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020833_2

574009-577548

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR

54 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_CP020833_2

>merge|NZ_CP020833|2|574009-577548|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTAACTACTTATTATGAAATGTAAATATTGAAGCAAGACAGCGACGTGGTTTCTGCAACATTGTTTTAACTACTTATTATGAAATGTAAATGTCAAATTGCTCATTAAAATAAAGAGGGTTAGTAAGTTTTAACTACTTATTATGAAATGTAAATTGTCATTTCTCCTTCCTTAGAGTTTCTTTAAGCTGCAGTTTTAACTACTTATTATGAAATGTAAATCTAACCAGAAAAAGAAATTAGCAAGACCATTTAACGTGTTTTAACTACTTATTATGAAATGTAAATCAGGTACTCTATTCTTTTTTGCTTGTTCATAATTCTTGTTTTAACTACTTATTATGAAATGTAAATCGCATATATTCGGCTGAATGTGTGAACCACCCAAAGGTTTTAACTACTTATTATGAAATGTAAATAGGCGCAGGGCAATTTTTACCAGTGACGTCATAATGGTTTTAACTACTTATTATGAAATGTAAATCTTTATCATTTACAGAAGCGTCTAAGCCCAGCTTGTGTTTTAACTACTTATTATGAAATGTAAATATTTAATCACTCCTTTCTATATATTTTCATAATTCCGTTTTAACTACTTATTATGAAATGTAAATTACCATGGAAGAAATGGCAATATCACCGCGTTCTTCGTTTTAACTACTTATTATGAAATGTAAATAAGTTATTCACTCCTATCTTTCGATTCCTAAAAAGTTTTAACTACTTATTATGAAATGTAAATACACAAAAGATGATTTACATAACCAAGAAATCCAGCGTTTTAACTACTTATTATGAAATGTAAATTTATTCATTGCTGTTTTAGGCGTATTTTCTTTTTTTGTTTTAACTACTTATTATGAAATGTAAATAAAAATATCCTTGTTAAATTGACGATTTAATGAGGTTTTAACTACTTATTATGAAATGTAAATTTATAAATCCTCCTTCATTCAATTAGTTTACAATTTCGTTTTAACTACTTATTATGAAATGTAAATTGTTGTTGTGATAAAGTCATTCCTGCTTGACTTACTGTAGTTGTTTTAACTACTTATTATGAAATGTAAATCAATAAACGGCTCTGTATAATAAGCTGTTAAAACACGTTTTAACTACTTATTATGAAATGTAAATTTCGTATTCGTAAATATCATTAACTCCAAAAGCGAGCGTTTTAACTACTTATTATGAAATGTAAATTCAAATGCTTTTATCGTATATGATTCTACATTAGGTTTTAACTACTTATTATGAAATGTAAATAGTAGAGCGTAGTGCCGATGTTCCATAGAAGTAACCAGTTTTAACTACTTATTATGAAATGTAAATGTTTGTTGTAACAGGCACAGCGAGCGAAACGGAAATGTTTTAACTACTTATTATGAAATGTAAATAAAAAAGTAAGGAATGGTACGAGCAAGAATTAAGTTTTAACTACTTATTATGAAATGTAAATCTGGTTACTCAACTGGCGACAGTAATACACCTCAATGTTTTAACTACTTATTATGAAATGTAAATTTTGGATAGGTTGTTTCTGATAAATAGGTTCACGGTTTTAACTACTTATTATGAAATGTAAATAAGTCTACTTGGATTTAGCTCTACACCTGCAACATGAGTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTTCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAATACAAGTGCTAGAACAGAAGTTATAATTTGAACATTACGTTTTAACTACTTATTATGAAATGTAAATTCGAATCAAATAATTTTAAAAGCTAAGCAAACAAAGTTTTAACTACTTATTATGAAATGTAAATCTCATAAGGATTTCGAGGCGGGTTAAACGACATGTAGTTTTAACTACTTATTATGAAATGTAAATGCTTTTTTCAACAATTTTATCACCAGATGTCATTAGTTTTAACTACTTATTATGAAATGTAAATTGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATAAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGGGTTTTAACTACTTATTATGAAATGTAAATGTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTTGTTTTAACTACTTATTATGAAATGTAAATTGTTATCTCCTGTGATGTAAAATAACCCTTCTATCGTTTTAACTACTTATTATGAAATGTAAATCTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGTGTTTTAACTACTTATTATGAAATGTAAATTAATACAAAATATTCATAACTCCTACATCATTATATAGTTTTAACTACTTATTATGAAATGTAAATTTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTCGTTTTAACTACTTATTATGAAATGTAAATTTGGATTTTATTAAATACAGAGTCACGGATTGTATTTGTTTTAACTACTTATTATGAAATGTAAATTTAGAGATAACGTTAGCATCCGTGATAACTTGGTTGTTTTAACTACTTATTATGAAATGTAAATATAAATTATCCGTATGTTCTTGAATTGTTTCTTCGTTTTAACTACTTATTATGAAATGTAAATCTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGAGTTTTAACTACTTATTATGAAATGTAAATGTGCTTTTCGAACATCTTTTTCTATATCTACATGGTTTTAACTACTTATTATGAAATGTAAATTCAGTTTGGTTCCAGCAGACATTACAATTCCTTGTAGTTTTAACTACTTATTATGAAATGTAAATATATTACTATTTGAAAAAGTGCGATCTGTCACAATTAGTTTTAACTACTTATTATGAAATGTAAATTACGATAATACGAGTTTTTCAATAGGCAGACCTCCGTTTTAACTACTTATTATGAAATGTAAATTTAGAAGCGGGACAGAAAAGAACTTTTCAAGATGTGTGTTTTAACTACTTATTATGAAATGTAAATGGTGAATTCGTCACAAGTATTAAGTCAATTACAGCGGTTTTAACTACTTATTATGAAATGTAAATGTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAACGTTTTAACTACTTATTATGAAATGTAAATAGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAGGTTTTAACTACTTATTATGAAATGTAAATTTTATTGTCGATAAGCTCATGACAGATGAATCACTGTTTTAACTACTTATTATGAAATGTAAATAAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGATGTTTTAACTACTTATTATGAAATGTAAATCTCTTCCACTTTTGCTGCTTTTTTCGCATCTGGTACAAGTTTTAACTACTTATTATGAAATGTAAATAAGCTACCCCTGCAAGACATGAAATAATCGCAATGCCGTTTTAACTACTTATTATGAAATGTAAATAAAAACTATGCAATTAGCAAAGTGATTTTATGTAATTGTTTTAACTACTTATTATGAAATCATAAA

>NZ_CP020833|2|1|574009-575663|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	ATTGAAGCAAGACAGCGACGTGGTTTCTGCAACATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAAATTGCTCATTAAAATAAAGAGGGTTAGTAA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTCATTTCTCCTTCCTTAGAGTTTCTTTAAGCTGCA
GTTTTAACTACTTATTATGAAATGTAAAT	CTAACCAGAAAAAGAAATTAGCAAGACCATTTAACGT
GTTTTAACTACTTATTATGAAATGTAAAT	CAGGTACTCTATTCTTTTTTGCTTGTTCATAATTCTT
GTTTTAACTACTTATTATGAAATGTAAAT	CGCATATATTCGGCTGAATGTGTGAACCACCCAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	AGGCGCAGGGCAATTTTTACCAGTGACGTCATAATG
GTTTTAACTACTTATTATGAAATGTAAAT	CTTTATCATTTACAGAAGCGTCTAAGCCCAGCTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAATCACTCCTTTCTATATATTTTCATAATTCC
GTTTTAACTACTTATTATGAAATGTAAAT	TACCATGGAAGAAATGGCAATATCACCGCGTTCTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTTATTCACTCCTATCTTTCGATTCCTAAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACACAAAAGATGATTTACATAACCAAGAAATCCAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATTCATTGCTGTTTTAGGCGTATTTTCTTTTTTT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAATATCCTTGTTAAATTGACGATTTAATGAG
GTTTTAACTACTTATTATGAAATGTAAAT	TTATAAATCCTCCTTCATTCAATTAGTTTACAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTGTTGTGATAAAGTCATTCCTGCTTGACTTACTGTAGTT
GTTTTAACTACTTATTATGAAATGTAAAT	CAATAAACGGCTCTGTATAATAAGCTGTTAAAACAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTCGTATTCGTAAATATCATTAACTCCAAAAGCGAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCAAATGCTTTTATCGTATATGATTCTACATTAG
GTTTTAACTACTTATTATGAAATGTAAAT	AGTAGAGCGTAGTGCCGATGTTCCATAGAAGTAACCA
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTGTTGTAACAGGCACAGCGAGCGAAACGGAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAGTAAGGAATGGTACGAGCAAGAATTAA
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTTCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAAT	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	TCGAATCAAATAATTTTAAAAGCTAAGCAAACAAA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAGAGATAACGTTAGCATCCGTGATAACTTGGTT
GTTTTAACTACTTATTATGAAATGTAAAT	ATAAATTATCCGTATGTTCTTGAATTGTTTCTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCTTTTCGAACATCTTTTTCTATATCTACATG
GTTTTAACTACTTATTATGAAATGTAAAT	TCAGTTTGGTTCCAGCAGACATTACAATTCCTTGTA
GTTTTAACTACTTATTATGAAATGTAAAT	ATATTACTATTTGAAAAAGTGCGATCTGTCACAATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TACGATAATACGAGTTTTTCAATAGGCAGACCTCC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAGAAGCGGGACAGAAAAGAACTTTTCAAGATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATTGTCGATAAGCTCATGACAGATGAATCACT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT
GTTTTAACTACTTATTATGAAATGTAAAT	CTCTTCCACTTTTGCTGCTTTTTTCGCATCTGGTACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC


>NZ_CP020833|2|2|574009-577548|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	ATTGAAGCAAGACAGCGACGTGGTTTCTGCAACATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAAATTGCTCATTAAAATAAAGAGGGTTAGTAA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTCATTTCTCCTTCCTTAGAGTTTCTTTAAGCTGCA
GTTTTAACTACTTATTATGAAATGTAAAT	CTAACCAGAAAAAGAAATTAGCAAGACCATTTAACGT
GTTTTAACTACTTATTATGAAATGTAAAT	CAGGTACTCTATTCTTTTTTGCTTGTTCATAATTCTT
GTTTTAACTACTTATTATGAAATGTAAAT	CGCATATATTCGGCTGAATGTGTGAACCACCCAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	AGGCGCAGGGCAATTTTTACCAGTGACGTCATAATG
GTTTTAACTACTTATTATGAAATGTAAAT	CTTTATCATTTACAGAAGCGTCTAAGCCCAGCTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAATCACTCCTTTCTATATATTTTCATAATTCC
GTTTTAACTACTTATTATGAAATGTAAAT	TACCATGGAAGAAATGGCAATATCACCGCGTTCTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTTATTCACTCCTATCTTTCGATTCCTAAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACACAAAAGATGATTTACATAACCAAGAAATCCAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATTCATTGCTGTTTTAGGCGTATTTTCTTTTTTT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAATATCCTTGTTAAATTGACGATTTAATGAG
GTTTTAACTACTTATTATGAAATGTAAAT	TTATAAATCCTCCTTCATTCAATTAGTTTACAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTGTTGTGATAAAGTCATTCCTGCTTGACTTACTGTAGTT
GTTTTAACTACTTATTATGAAATGTAAAT	CAATAAACGGCTCTGTATAATAAGCTGTTAAAACAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTCGTATTCGTAAATATCATTAACTCCAAAAGCGAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCAAATGCTTTTATCGTATATGATTCTACATTAG
GTTTTAACTACTTATTATGAAATGTAAAT	AGTAGAGCGTAGTGCCGATGTTCCATAGAAGTAACCA
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTGTTGTAACAGGCACAGCGAGCGAAACGGAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAGTAAGGAATGGTACGAGCAAGAATTAA
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTTCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	TCGAATCAAATAATTTTAAAAGCTAAGCAAACAAA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAGAGATAACGTTAGCATCCGTGATAACTTGGTT
GTTTTAACTACTTATTATGAAATGTAAAT	ATAAATTATCCGTATGTTCTTGAATTGTTTCTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCTTTTCGAACATCTTTTTCTATATCTACATG
GTTTTAACTACTTATTATGAAATGTAAAT	TCAGTTTGGTTCCAGCAGACATTACAATTCCTTGTA
GTTTTAACTACTTATTATGAAATGTAAAT	ATATTACTATTTGAAAAAGTGCGATCTGTCACAATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TACGATAATACGAGTTTTTCAATAGGCAGACCTCC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAGAAGCGGGACAGAAAAGAACTTTTCAAGATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATTGTCGATAAGCTCATGACAGATGAATCACT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT
GTTTTAACTACTTATTATGAAATGTAAAT	CTCTTCCACTTTTGCTGCTTTTTTCGCATCTGGTACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_CP020833|2|1|574009-577548|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTGAAGCAAGACAGCGACGTGGTTTCTGCAACATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAAATTGCTCATTAAAATAAAGAGGGTTAGTAA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTCATTTCTCCTTCCTTAGAGTTTCTTTAAGCTGCA
GTTTTAACTACTTATTATGAAATGTAAAT	CTAACCAGAAAAAGAAATTAGCAAGACCATTTAACGT
GTTTTAACTACTTATTATGAAATGTAAAT	CAGGTACTCTATTCTTTTTTGCTTGTTCATAATTCTT
GTTTTAACTACTTATTATGAAATGTAAAT	CGCATATATTCGGCTGAATGTGTGAACCACCCAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	AGGCGCAGGGCAATTTTTACCAGTGACGTCATAATG
GTTTTAACTACTTATTATGAAATGTAAAT	CTTTATCATTTACAGAAGCGTCTAAGCCCAGCTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAATCACTCCTTTCTATATATTTTCATAATTCC
GTTTTAACTACTTATTATGAAATGTAAAT	TACCATGGAAGAAATGGCAATATCACCGCGTTCTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTTATTCACTCCTATCTTTCGATTCCTAAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACACAAAAGATGATTTACATAACCAAGAAATCCAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATTCATTGCTGTTTTAGGCGTATTTTCTTTTTTT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAATATCCTTGTTAAATTGACGATTTAATGAG
GTTTTAACTACTTATTATGAAATGTAAAT	TTATAAATCCTCCTTCATTCAATTAGTTTACAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTGTTGTGATAAAGTCATTCCTGCTTGACTTACTGTAGTT
GTTTTAACTACTTATTATGAAATGTAAAT	CAATAAACGGCTCTGTATAATAAGCTGTTAAAACAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTCGTATTCGTAAATATCATTAACTCCAAAAGCGAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCAAATGCTTTTATCGTATATGATTCTACATTAG
GTTTTAACTACTTATTATGAAATGTAAAT	AGTAGAGCGTAGTGCCGATGTTCCATAGAAGTAACCA
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTGTTGTAACAGGCACAGCGAGCGAAACGGAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAGTAAGGAATGGTACGAGCAAGAATTAA
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAAAAAAACATCTTTTCAATTTGTTGTTTTGC
GTTTTAACTACTTATTATGAAATGTAAAT	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	TCGAATCAAATAATTTTAAAAGCTAAGCAAACAAA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAGAGATAACGTTAGCATCCGTGATAACTTGGTT
GTTTTAACTACTTATTATGAAATGTAAAT	ATAAATTATCCGTATGTTCTTGAATTGTTTCTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCTTTTCGAACATCTTTTTCTATATCTACATG
GTTTTAACTACTTATTATGAAATGTAAAT	TCAGTTTGGTTCCAGCAGACATTACAATTCCTTGTA
GTTTTAACTACTTATTATGAAATGTAAAT	ATATTACTATTTGAAAAAGTGCGATCTGTCACAATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TACGATAATACGAGTTTTTCAATAGGCAGACCTCC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAGAAGCGGGACAGAAAAGAACTTTTCAAGATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATTGTCGATAAGCTCATGACAGATGAATCACT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT
GTTTTAACTACTTATTATGAAATGTAAAT	CTCTTCCACTTTTGCTGCTTTTTTCGCATCTGGTACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_CP020833|2|2|575698-577482|PILER-CR
	ATTGAAGCAAGACAGCGACGTGGTTTCTGCAACATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAAATTGCTCATTAAAATAAAGAGGGTTAGTAA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTCATTTCTCCTTCCTTAGAGTTTCTTTAAGCTGCA
GTTTTAACTACTTATTATGAAATGTAAAT	CTAACCAGAAAAAGAAATTAGCAAGACCATTTAACGT
GTTTTAACTACTTATTATGAAATGTAAAT	CAGGTACTCTATTCTTTTTTGCTTGTTCATAATTCTT
GTTTTAACTACTTATTATGAAATGTAAAT	CGCATATATTCGGCTGAATGTGTGAACCACCCAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	AGGCGCAGGGCAATTTTTACCAGTGACGTCATAATG
GTTTTAACTACTTATTATGAAATGTAAAT	CTTTATCATTTACAGAAGCGTCTAAGCCCAGCTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAATCACTCCTTTCTATATATTTTCATAATTCC
GTTTTAACTACTTATTATGAAATGTAAAT	TACCATGGAAGAAATGGCAATATCACCGCGTTCTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTTATTCACTCCTATCTTTCGATTCCTAAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	ACACAAAAGATGATTTACATAACCAAGAAATCCAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATTCATTGCTGTTTTAGGCGTATTTTCTTTTTTT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAATATCCTTGTTAAATTGACGATTTAATGAG
GTTTTAACTACTTATTATGAAATGTAAAT	TTATAAATCCTCCTTCATTCAATTAGTTTACAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTGTTGTGATAAAGTCATTCCTGCTTGACTTACTGTAGTT
GTTTTAACTACTTATTATGAAATGTAAAT	CAATAAACGGCTCTGTATAATAAGCTGTTAAAACAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTCGTATTCGTAAATATCATTAACTCCAAAAGCGAGC
GTTTTAACTACTTATTATGAAATGTAAAT	TCAAATGCTTTTATCGTATATGATTCTACATTAG
GTTTTAACTACTTATTATGAAATGTAAAT	AGTAGAGCGTAGTGCCGATGTTCCATAGAAGTAACCA
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTGTTGTAACAGGCACAGCGAGCGAAACGGAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAGTAAGGAATGGTACGAGCAAGAATTAA
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG
GTTTTAACTACTTATTATGAAATGTAAAT	AAGTCTACTTGGATTTAGCTCTACACCTGCAACATGA
GTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTTCAATTTGTTGTTTTGCGTTTTAACTACTTATTATGAAATGTAAAT	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC
GTTTTAACTACTTATTATGAAATGTAAAT	TCGAATCAAATAATTTTAAAAGCTAAGCAAACAAA
GTTTTAACTACTTATTATGAAATGTAAAT	CTCATAAGGATTTCGAGGCGGGTTAAACGACATGTA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG
GTTTTAACTACTTATTATGAAATGTAAAT	GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CTTGTTAAGTCCCCACTTCCATTAAAATCGTAATTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAATACAAAATATTCATAACTCCTACATCATTATATA
GTTTTAACTACTTATTATGAAATGTAAAT	TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAGAGATAACGTTAGCATCCGTGATAACTTGGTT
GTTTTAACTACTTATTATGAAATGTAAAT	ATAAATTATCCGTATGTTCTTGAATTGTTTCTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	GTGCTTTTCGAACATCTTTTTCTATATCTACATG
GTTTTAACTACTTATTATGAAATGTAAAT	TCAGTTTGGTTCCAGCAGACATTACAATTCCTTGTA
GTTTTAACTACTTATTATGAAATGTAAAT	ATATTACTATTTGAAAAAGTGCGATCTGTCACAATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TACGATAATACGAGTTTTTCAATAGGCAGACCTCC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAGAAGCGGGACAGAAAAGAACTTTTCAAGATGTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATTGTCGATAAGCTCATGACAGATGAATCACT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT
GTTTTAACTACTTATTATGAAATGTAAAT	CTCTTCCACTTTTGCTGCTTTTTTCGCATCTGGTACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC
GTTTTAACTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020833.1\|WP_026749765.1\|582234_582987_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP020833.1\|WP_003721320.1\|586874_587615_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP020833.1\|WP_009925355.1\|572037_572526_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP020833.1\|WP_014600551.1\|562984_564415_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CP020833.1\|WP_015454222.1\|585498_586830_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_CP020833.1\|WP_085400120.1\|565703_566426_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP020833.1\|WP_069002207.1\|569816_572024_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP020833.1\|WP_003721317.1\|583092_583536_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020833.1\|WP_003721303.1\|564535_565351_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP020833.1\|WP_003721321.1\|587844_589320_+\|membrane-protein	unknown	unknown	unknown
NZ_CP020833.1\|WP_085400123.1\|566441_568130_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_CP020833.1\|WP_003721307.1\|568966_569749_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_CP020833.1\|WP_003727296.1\|577619_577988_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_CP020833.1\|WP_039120417.1\|572538_573528_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP020833.1\|WP_012581884.1\|568119_568989_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP020833.1\|WP_031644454.1\|578134_579550_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP020833.1\|WP_003721318.1\|583581_585243_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP020833.1\|WP_003726689.1\|580717_582034_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_CP020833.1\|WP_003721310.1\|573532_573811_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP020833.1\|WP_085400125.1\|579681_580686_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851

Protein	Function_ID	Function_description	E-value
NZ_CP020833.1\|WP_026749765.1\|582234_582987_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.57624e-63
NZ_CP020833.1\|WP_003721320.1\|586874_587615_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
NZ_CP020833.1\|WP_009925355.1\|572037_572526_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.69311e-59
NZ_CP020833.1\|WP_014600551.1\|562984_564415_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	9.64038e-100
NZ_CP020833.1\|WP_015454222.1\|585498_586830_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	1.38609e-74
NZ_CP020833.1\|WP_085400120.1\|565703_566426_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.69341e-31
NZ_CP020833.1\|WP_069002207.1\|569816_572024_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	7.65419e-62
NZ_CP020833.1\|WP_003721303.1\|564535_565351_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP020833.1\|WP_085400123.1\|566441_568130_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	6.67144e-26
NZ_CP020833.1\|WP_003721307.1\|568966_569749_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.37797e-23
NZ_CP020833.1\|WP_003727296.1\|577619_577988_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	2.33548e-41
NZ_CP020833.1\|WP_039120417.1\|572538_573528_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.03751e-163
NZ_CP020833.1\|WP_012581884.1\|568119_568989_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	2.98892e-55
NZ_CP020833.1\|WP_031644454.1\|578134_579550_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.42897e-80
NZ_CP020833.1\|WP_003721318.1\|583581_585243_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	3.54266e-147
NZ_CP020833.1\|WP_003726689.1\|580717_582034_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP020833.1\|WP_003721310.1\|573532_573811_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
NZ_CP020833.1\|WP_085400125.1\|579681_580686_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.19387e-20

>NZ_CP020833.1|WP_003721310.1|573532_573811_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>NZ_CP020833.1|WP_039120417.1|572538_573528_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MESYYLFSDGELKRKDNVIRLTAPDGRFKDLKVELTRDIFLFGEVTMNTKGLNYIGQLGIPVHIFNYYGFYSGSYYPRETNVSGQLLISQVEHYTDTEKRQLIACQFIEAASFNLLRNLKYYKQRGKDVSNEIDEIKFLRKSICKMNDIPSLMGIEGNIRKVYYEAWQKIINQKIDFEKRVKRPPDNMVNTLISYVNSLVYSSCLTEIYKTQLNPVISYLHSAGERRFSLCLDVAEIFKPLIADRIIFSLLNKNIITEDDFEKEANFCYMKKAARQKVLQAYDLRMKETIKHRDLGRNVSYRHLIRLECYKLVKHLMNDKEYEAFKIWW
>NZ_CP020833.1|WP_009925355.1|572037_572526_+|CRISPR-associated-protein-Cas4
MRISGTHVYYYFVCKRKLWCFSKEIRMEHLDENVQLGKLLDESSYNREKGQVMIDETVNIDFIKDWKVLHEVKKSKAIEEAGIWQLKYYMYFLKQKGIIIEKGVVDYPKLRQRETIFLTTEDERKIEKILVDIEITTSSLKPPTIIDKPLCKKCAYYEYCYI
>NZ_CP020833.1|WP_069002207.1|569816_572024_+|CRISPR-associated-helicase/endonuclease-Cas3
MHKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGENAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLAHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKRDRSAKEKAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFVNSKTILNEHAGVLTEEKKMELVERVYSTEALRGSEFYNDLRKTINYVKAFDSYELDKADVRRRFRNINSVSVIPEEVWQDNVEEINSYFAILRKTSKEISTKEKMIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSDEIGIIMYEKQEDLFF
>NZ_CP020833.1|WP_003721307.1|568966_569749_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NZ_CP020833.1|WP_012581884.1|568119_568989_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKAELKAESVPAFFNDIKGKIDAYYESN
>NZ_CP020833.1|WP_085400123.1|566441_568130_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MRTEIEVRANDWLINAGLTGFLNIVGKENVRIDGQAIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDKFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYIQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLLKQTKFIDPYLDYKTSFLDPVIDYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGIEELHRVNERMRNSILRFNKDGINSTNTYRALVESITMEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNVNLYKEVIQHLMNNENLFTLIHKLIYYKQTSANGLYYNMGHVSGILDINTKFLKEMEVMTNISQNQLWFVQNCGKEFKEGYVKKKSENKISGITYKLLNSLKVNDKDGFMDTLLNSYSYLSMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NZ_CP020833.1|WP_085400120.1|565703_566426_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKGAEIQLNEANCIINFSTGDAETGIIFYNALISLRGSKVLFGAGNNITIKNIQIVPEKKIIGNRTILRTLSPMVSRDHNRETFKNWFYSFEDEEFEPTLKRNILPYLIDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELETEAYLQKYLVENGLGTMTGSGFGMIEQL
>NZ_CP020833.1|WP_003721303.1|564535_565351_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP020833.1|WP_014600551.1|562984_564415_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_CP020833.1|WP_003727296.1|577619_577988_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVAVLLV
>NZ_CP020833.1|WP_031644454.1|578134_579550_+|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGMGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_CP020833.1|WP_085400125.1|579681_580686_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPMKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDFTEELTEALKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NZ_CP020833.1|WP_003726689.1|580717_582034_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVEKAGVDMEVHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NZ_CP020833.1|WP_026749765.1|582234_582987_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQIDNEKI
>NZ_CP020833.1|WP_003721317.1|583092_583536_+|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNIFLENGIGTDSLLIVLKAFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NZ_CP020833.1|WP_003721318.1|583581_585243_-|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKSEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>NZ_CP020833.1|WP_015454222.1|585498_586830_+|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALKEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK
>NZ_CP020833.1|WP_003721320.1|586874_587615_-|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>NZ_CP020833.1|WP_003721321.1|587844_589320_+|membrane-protein
MIRKVKSISMWLWHHLTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Crispr_ID: NZ_CP020833_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP020833_3

2711439-2712462

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CRT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	PILER-CR

15 spacers

csn2,cas2,cas9

The CRISPR arrays of NZ_CP020833_3

>merge|NZ_CP020833|3|2711439-2712462|CRISPRCasFinder,CRT,PILER-CR
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAACCCCTGTTAGCGATGGGGGGAGAATATTAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAAGTCGGGAACGGATCTTCCTTGTCGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGACAACTGGACAAACAGGTTTTTTTGTTAAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAGCTCGTTCGGCGTGTCTGACTGATAAAGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCGCTTTACGGTCAATACCAACGCCGCTCGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAGGAGATGCGTAAATATTCTACCTATGTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTCCTCTACACGTGGAATCTCGGAAAGAATCGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTGTTCTAGTTGTTCCTCGCATGTTGTCGGAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCAAACGTCGTCTAACTGTTTGATTTTCCAGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGCCAAAATCGGTGGGTACTTTTTTGGTAATGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACAATAACGACTTTGCGGTAAGCCCCATTTTTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACGTTTTGATTGAGTGGGCACCACTATTGGCAGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTAGATATGCGCCAACATAAATATCCTATTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTAGCGGAGTTGATGGTTATTCTACCTATGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGTGAAAAATATAACAGAAAGGAAGCTGTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_CP020833|3|3|2711439-2712462|CRISPRCasFinder
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAGTCGGGAACGGATCTTCCTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACAACTGGACAAACAGGTTTTTTTGTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCTCGTTCGGCGTGTCTGACTGATAAAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTTTACGGTCAATACCAACGCCGCTCG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAGGAGATGCGTAAATATTCTACCTATGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCCTCTACACGTGGAATCTCGGAAAGAATC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTCTAGTTGTTCCTCGCATGTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAACGTCGTCTAACTGTTTGATTTTCCAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCCAAAATCGGTGGGTACTTTTTTGGTAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATAACGACTTTGCGGTAAGCCCCATTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTGATTGAGTGGGCACCACTATTGGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTAGATATGCGCCAACATAAATATCCTATT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAGCGGAGTTGATGGTTATTCTACCTATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTGAAAAATATAACAGAAAGGAAGCTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_CP020833|3|2|2711439-2712462|CRT
TGTGTGTTGATATTCAGAATAATATAGCTCTAAAAC	CCCTGTTAGCGATGGGGGGAGAATATTA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAAGTCGGGAACGGATCTTCCTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GACAACTGGACAAACAGGTTTTTTTGTTAA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCTCGTTCGGCGTGTCTGACTGATAAAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTTTACGGTCAATACCAACGCCGCTCG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAGGAGATGCGTAAATATTCTACCTATGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCCTCTACACGTGGAATCTCGGAAAGAATC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTCTAGTTGTTCCTCGCATGTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAACGTCGTCTAACTGTTTGATTTTCCAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCCAAAATCGGTGGGTACTTTTTTGGTAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATAACGACTTTGCGGTAAGCCCCATTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTGATTGAGTGGGCACCACTATTGGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTAGATATGCGCCAACATAAATATCCTATT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CTAGCGGAGTTGATGGTTATTCTACCTATG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTGTGAAAAATATAACAGAAAGGAAGCTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

>NZ_CP020833|3|3|2711635-2712462|PILER-CR
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AGCTCGTTCGGCGTGTCTGACTGATAAAGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCGCTTTACGGTCAATACCAACGCCGCTCG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAGGAGATGCGTAAATATTCTACCTATGTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TCCTCTACACGTGGAATCTCGGAAAGAATC
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TGTTCTAGTTGTTCCTCGCATGTTGTCGGA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	CAAACGTCGTCTAACTGTTTGATTTTCCAG
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GCCAAAATCGGTGGGTACTTTTTTGGTAAT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	AATAACGACTTTGCGGTAAGCCCCATTTTT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	GTTTTGATTGAGTGGGCACCACTATTGGCA
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	TTAGATATGCGCCAACATAAATATCCTATTGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACCTAGCGGAGTTGATGGTTATTCTACCTATGGTTTTGGTAGCATTCAAAATAACATAGCTCTAAAACTTGTGAAAAATATAACAGAAAGGAAGCTGT
GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP020833.1\|WP_085400889.1\|2722262_2723129_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237454
NZ_CP020833.1\|WP_039381694.1\|2697624_2697930_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP020833.1\|WP_003723646.1\|2710550_2710913_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020833.1\|WP_085400887.1\|2720710_2721457_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP020833.1\|WP_085400878.1\|2709133_2709985_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NZ_CP020833.1\|WP_077951825.1\|2698474_2698693_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|226987
NZ_CP020833.1\|WP_003733027.1\|2713242_2713584_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP020833.1\|WP_003723642.1\|2706267_2707296_-\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP020833.1\|WP_003723669.1\|2721462_2722260_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP020833.1\|WP_085400891.1\|2723104_2723944_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|184195
NZ_CP020833.1\|WP_003727703.1\|2720078_2720516_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP020833.1\|WP_085400876.1\|2707564_2709091_+\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|224619
NZ_CP020833.1\|WP_085400884.1\|2714447_2718452_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP020833.1\|WP_012951966.1\|2697960_2698452_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368753
NZ_CP020833.1\|WP_014601173.1\|2718961_2719441_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP020833.1\|WP_003723652.1\|2719664_2720057_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP020833.1\|WP_003724018.1\|2699375_2700539_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP020833.1\|WP_061108494.1\|2712590_2713253_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP020833.1\|WP_085400881.1\|2710006_2710429_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP020833.1\|WP_003724017.1\|2698707_2699313_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP020833.1\|WP_085400889.1\|2722262_2723129_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237454	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
NZ_CP020833.1\|WP_039381694.1\|2697624_2697930_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.5003e-17
NZ_CP020833.1\|WP_085400887.1\|2720710_2721457_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	5.17627e-128
NZ_CP020833.1\|WP_085400878.1\|2709133_2709985_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	1.33361e-170
NZ_CP020833.1\|WP_077951825.1\|2698474_2698693_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	0.000299219
NZ_CP020833.1\|WP_003733027.1\|2713242_2713584_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.15214e-45
NZ_CP020833.1\|WP_003723642.1\|2706267_2707296_-\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	4.13281e-115
NZ_CP020833.1\|WP_003723669.1\|2721462_2722260_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.70432e-53
NZ_CP020833.1\|WP_085400891.1\|2723104_2723944_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|184195	PRK13635, cbiO, energy-coupling factor ABC transporter ATP-binding protein.	0
NZ_CP020833.1\|WP_003727703.1\|2720078_2720516_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.08607e-102
NZ_CP020833.1\|WP_085400876.1\|2707564_2709091_+\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	4.29964e-69
NZ_CP020833.1\|WP_085400884.1\|2714447_2718452_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP020833.1\|WP_012951966.1\|2697960_2698452_+\|hypothetical-protein	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	0.00115015
NZ_CP020833.1\|WP_003723652.1\|2719664_2720057_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	4.44953e-85
NZ_CP020833.1\|WP_003724018.1\|2699375_2700539_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.83105e-40
NZ_CP020833.1\|WP_061108494.1\|2712590_2713253_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	8.47764e-115
NZ_CP020833.1\|WP_085400881.1\|2710006_2710429_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	9.16831e-42

>NZ_CP020833.1|WP_003723646.1|2710550_2710913_-|hypothetical-protein
MKKTSIIFIFCALLLTACSTTTKEIPRQTTEATGTIEQVETESILIKNFKIKNDNNTPELSVRFHISEKYHDETGNKIKRTELNKNDNIKIILTKDFQIQETSPAQIDPKYVQKIILLNK
>NZ_CP020833.1|WP_085400881.1|2710006_2710429_-|MerR-family-transcriptional-regulator
MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDLNWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLTEMKQVRDLLVYKIDSYDSHIAQFKAGELNADNVEKLWERDKF
>NZ_CP020833.1|WP_085400878.1|2709133_2709985_-|aldo/keto-reductase
MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIKAGYRHIDTAQSYMNEEAVGRGIAASGVDRKELFITTKIWVGNVSYKGVMSSFDRSLKRLGLDYVDLLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEVNPFQQQTANLAVLRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWLVEQDIIVLAKSVKPERMAQNLAIFDFELTEADKEEIAGIDQGESQFFSHSDPEMVKWMASRKLNV
>NZ_CP020833.1|WP_085400876.1|2707564_2709091_+|GW-domain-containing-glycosaminoglycan-binding-protein
MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGYATDPDYVSKLVAIIERYNLDKYDVIYDKIDSNQSLAAIGTVAENKKQEVIWSAPYNTEDANKIGTLENYSGRNLEISWEAKTEKGLWYFIRENDKDIGWVNSNALKINYHQKEDENIHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALEADKKITRGGYAWFRISEGEKVIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPLADYNNEKLEIVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTAKLYNKPVESTSTQPKAVGFYYGKLLAVDKTANILGEDWLHVKDSHNSLGWIKANDING
>NZ_CP020833.1|WP_003723642.1|2706267_2707296_-|Mrp/NBP35-family-ATP-binding-protein
MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIALADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKFLAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPHKENGQIIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGTGDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLADGQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLAEKIIPCLS
>NZ_CP020833.1|WP_003724018.1|2699375_2700539_+|site-specific-integrase
MASYVNLGNNKYELRVSKGYDARGKQIRKTKNVTVKTVKALKLELSNFEAYVYSSDYTEIKDMRFIDFVEKWRLNYAKRELKGNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKKGVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRIKILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKNKRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPASVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVTLNTYAHITEDGYSEAAKTFDNFYKSSK
>NZ_CP020833.1|WP_003724017.1|2698707_2699313_+|hypothetical-protein
MSKYRHLLKKWWLWVIFLLVIIGIVSLFWYTQVYSSEWGKGLSKEDKEVLEKANKSTNEFNKFAKEANSGIKSFNNDATINPQIVINPFTKMGDNITERSDEFIKDYDEYSISIQNILKDDYNNIKKLRDDVVAQQEEIKSIYSNAHNYNRELSTVESRIVENIYQEMHKEQKESLGLKNHEFKKNAEFSDKAIKLMPGVD
>NZ_CP020833.1|WP_077951825.1|2698474_2698693_+|zinc-ribbon-domain-containing-protein
MYCPKCGHALDHHENQCPNCLTPIIYQSNNNGKARKVGEIMEESGKLMSGCGCLMTLLITIPVIVILIIMFL
>NZ_CP020833.1|WP_012951966.1|2697960_2698452_+|hypothetical-protein
MNKTSSELKQEFPELNFIIDNSLPTKLFGFIQNKVVHLHPSLTESELRCTIIEEAMHWKYTVGDITNFNNIDNIKQEKFARRKSHEYLVNLQTLALCYDLGYRTYYEAATFLNVTEKFLIEVVENYREKYGLMYNNGNYIIHFGSTIQVFQEDNSFYPYDYGC
>NZ_CP020833.1|WP_039381694.1|2697624_2697930_+|helix-turn-helix-transcriptional-regulator
MFGNRLSELRKKKGISQYKLADELGFSRGQIANYEQGSREPDYSTLLKIAEYFNVTTDYLLGKEAFDNSDLLAAHIDDDLTEDERIEIEKYLKFIRSQKEE
>NZ_CP020833.1|WP_061108494.1|2712590_2713253_-|type-II-A-CRISPR-associated-protein-Csn2
MNFNFKLLDEPITIEDSTIFVIEDVRVFANVAKLFYQYDETEELKVFNTKQHPLKSSELMLVTDILGHDINSAATLKLIYTDLEQQLNEKPEVKSMIDKLTATISELIGYELLEHELDLEEDEITVIELFKALGIKIETKSDTVFEKLIEIVQVYKYLSKKKLLVLINVCSYLTEEELLELRRYISLYQVKVLFIEPRKIKGSPQVTLDSDYFLHVENSV
>NZ_CP020833.1|WP_003733027.1|2713242_2713584_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMLLMFDMPTDTAKERKAYRQFRRFILSEGFIMHQYSVYSKILLNGTASKAMLARLKQQNPKKGLITLLTVTEKQFARMVYLSGEQNKSVGNSDARLIFLGDAIDEF
>NZ_CP020833.1|WP_085400884.1|2714447_2718452_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNPYTIGLDIGTNSVGWAVLTDQYDLVKRKMKVAGNSDKKQIKKNFWGVRLFDDGQTAVDRRMNRTARRRIERRRNRISYLQEIFAVEMANIDANFFCRLNDSFYVDSEKRNSRHPFFATIEEEVAYHKNYRTIYHLREELVNSSEKADLRLVYLALAHIIKYRGNFLIEGALDTKNTSVDGVYEQFIQTYNQVFMSNIEEGTLAKVEENIEVANILAGKFTRREKFERILQLYPGEKSTGMFAQFISLIVGSKGNFQKVFDLIEKTDIECAKDSYEEDLETLLAIIGDEYAELFVAAKNTYNAVVLSSIITVTDTETNAKLSASMIERFDAHEKDLVELKAFIKLNLPKQYEEIFSNAAIDGYAGYIDGKTKQVDFYKYLKTILENIEGSDYFIAKIEEENFLRKQRTFDNGVIPHQLHLEELEAILHQQAKYYPFLREDYEKIKSLVTFRIPYFVGPLAKGQSEFAWLTRKADGEIRPWNIEEKVDFGKSAVDFIEKMTNKDTYLPKENVLPKHSLCYQKYMVYNELTKIRYIDDQGKTNYFSGQEKQQIFNDLFKQKRKVKKKDLELFLRNINHVEIPTIEGLEDSFNASYATYHDLMKVGIKQEILDNPLNTEMLEDIVKILTVFEDKRMIKEQLQQFSDVLDGTVLKKLERRHYTGWGRLSAKLLVGIRDKQSHLTILDYLMNDDGLNRNLMQLINDSNLSFKSIIEKEQVSTADKDLQSIVADLAGSPAIKKGILQSLKVVEELVSVMGYPPQTIVVEMARENQTTNKGKNNSKPRYKSLEKAIKEFGSQILKEHPTDNQELKNNRLYLYYLQNGKDMYTGQELDIHNLSNYDIDHIVPQSFITDNSIDNLVLTSSAGNREKGDNVPPLEIVQKRKIFWEKLYQGNLMSKRKFDYLTKAERGGLTEADKARFIHRQLVETRQITKNVANILHQRFNYKTDDNEDTMKPVRIVTLKSALVSQFRKQFQLYKVREVNDYHHAHDAYLNGVVANTLLKVYPQLEPEFVYGEYHQFDWFKANKATAKKQFYTNIMLFFAQKERIIDENGEILWDKKYLETIKKVLNYRQMNIVKKTEIQKGEFSNQNPKPRGDSSKLIPKKTNLNPIKYGGFEGSNMAYAIIIEHEKRKKKVTIEKKLIQINIMERKAFEKDEKVFLEGKGYHQPKVLTKLPKYALYECENGRRRMLGSANEVHKGNQMLLPNHLMTLLYHAEKREAIDGESLAYIEAHKAVFGELLAHISEFARKYTLANDKLDEINMLYERNKDGDVKSIAESFVSLKKFNAFGVHKDFNFFGTTIKRKRDRKLKELLNSTIIYQSITGLYESRKRLDS
>NZ_CP020833.1|WP_014601173.1|2718961_2719441_-|hypothetical-protein
MKGLIINKMHSGYFTNMSEVFNLLPEEELNCMWLVSSYECNIYPFEQIPFEEEYVWMKGTELKEILNQEEVMFIWGNFTSYPSNTKLKDILKYPIPFADGNSDLWKKDVHLSNPLSNTELISWDSSIFLALSKNTNLIEGLKDNYPDSEDLSTYNSDID
>NZ_CP020833.1|WP_003723652.1|2719664_2720057_-|30S-ribosomal-protein-S9
MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAALREVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAGLLTRDSRMKERKKPGLKGARRAPQFSKR
>NZ_CP020833.1|WP_003727703.1|2720078_2720516_-|50S-ribosomal-protein-L13
MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQFTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLLELSIKGMLPKNSLGRQLFKKLHVYGGSEHEHAAQQPEVYELRG
>NZ_CP020833.1|WP_085400887.1|2720710_2721457_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTVRITASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSARTERDSKVRTLYSINFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDISEALLARDRQKLISKTAPPQGLYLWRVDYE
>NZ_CP020833.1|WP_003723669.1|2721462_2722260_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLTYALMFVYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQITTLGLANGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALMLSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAEDLAIAMEARGYRGGKGRTRFRILRWRFADTFLLISLAVLSGLLFWLRS
>NZ_CP020833.1|WP_085400889.1|2722262_2723129_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEETVEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIADVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVLMKAGTVLQIGTPREIFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELTTEMAPYLAKGGA
>NZ_CP020833.1|WP_085400891.1|2723104_2723944_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MAESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGSGKSTIAKLLNGLLFPEDGLIKIGHFVLSEKNIWDIRRQVGMVFQNPDNQFVGATVQDDVAFGLENHGVPHDTMVERVESALNEVGMQSYALHEPARLSGGQKQRVAIAGVLALQPDVIILDEATSMLDPRGRAEVMETIRIMREQEDITVISITHDLDEVLFADRVIVMNKGEIHSEGTPKEIFQQADAMREIGLGVPFIIELQEKLVAGGFETGSTVLSEGALLDQLWKLNSNN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP020833_2	2.1\|574038\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574038-574073	36	NZ_CP020833.1	320763-320798	0	1.0
NZ_CP020833_2	2.10\|574625\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574625-574660	36	NZ_CP020833.1	2662768-2662803	0	1.0
NZ_CP020833_2	2.16\|575012\|42\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575012-575053	42	NZ_CP020833.1	2326840-2326881	0	1.0
NZ_CP020833_2	2.21\|575343\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575343-575378	36	NZ_CP020833.1	897669-897704	0	1.0
NZ_CP020833_2	2.40\|576573\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576573-576606	34	NZ_CP020833.1	569847-569880	0	1.0
NZ_CP020833_2	2.42\|576701\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576701-576734	34	NZ_CP020833.1	2663837-2663870	0	1.0
NZ_CP020833_2	2.12\|574753\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574753-574788	36	NZ_CP020833.1	1485382-1485417	1	0.972
NZ_CP020833_3	3.10\|2712067\|30\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	2712067-2712096	30	NZ_CP020833.1	1305515-1305544	1	0.967
NZ_CP020833_2	2.44\|576829\|37\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576829-576865	37	NZ_CP020833.1	2668843-2668879	2	0.946

1. spacer 2.1|574038|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to position: 320763-320798, mismatch: 0, identity: 1.0

attgaagcaagacagcgacgtggtttctgcaacatt	CRISPR spacer
attgaagcaagacagcgacgtggtttctgcaacatt	Protospacer
************************************

2. spacer 2.10|574625|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to position: 2662768-2662803, mismatch: 0, identity: 1.0

taccatggaagaaatggcaatatcaccgcgttcttc	CRISPR spacer
taccatggaagaaatggcaatatcaccgcgttcttc	Protospacer
************************************

3. spacer 2.16|575012|42|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to position: 2326840-2326881, mismatch: 0, identity: 1.0

tgttgttgtgataaagtcattcctgcttgacttactgtagtt	CRISPR spacer
tgttgttgtgataaagtcattcctgcttgacttactgtagtt	Protospacer
******************************************

4. spacer 2.21|575343|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to position: 897669-897704, mismatch: 0, identity: 1.0

gtttgttgtaacaggcacagcgagcgaaacggaaat	CRISPR spacer
gtttgttgtaacaggcacagcgagcgaaacggaaat	Protospacer
************************************

5. spacer 2.40|576573|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to position: 569847-569880, mismatch: 0, identity: 1.0

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
ataaattatccgtatgttcttgaattgtttcttc	Protospacer
**********************************

6. spacer 2.42|576701|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to position: 2663837-2663870, mismatch: 0, identity: 1.0

gtgcttttcgaacatctttttctatatctacatg	CRISPR spacer
gtgcttttcgaacatctttttctatatctacatg	Protospacer
**********************************

7. spacer 2.12|574753|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to position: 1485382-1485417, mismatch: 1, identity: 0.972

acacaaaagatgatttacataaccaagaaatccagc	CRISPR spacer
acacaaaaaatgatttacataaccaagaaatccagc	Protospacer
********.***************************

8. spacer 3.10|2712067|30|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to position: 1305515-1305544, mismatch: 1, identity: 0.967

gccaaaatcggtgggtacttttttggtaat	CRISPR spacer
gccaaaatcggtgggtacttttttggaaat	Protospacer
************************** ***

9. spacer 2.44|576829|37|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to position: 2668843-2668879, mismatch: 2, identity: 0.946

atattactatttgaaaaagtgcgatctgtcacaatta	CRISPR spacer
atattactattggaaaaagcgcgatctgtcacaatta	Protospacer
*********** *******.*****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP020833_2	2.18\|575148\|37\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575148-575184	37	NC_003216	Listeria phage A118, complete genome	8934-8970	0	1.0
NZ_CP020833_2	2.18\|575148\|37\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575148-575184	37	AJ242593	Bacteriophage A118 complete genome	8934-8970	0	1.0
NZ_CP020833_2	2.19\|575214\|34\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575214-575247	34	MH299806	Listeria phage LP-KV022, complete genome	7441-7474	0	1.0
NZ_CP020833_2	2.19\|575214\|34\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575214-575247	34	MN114083	Listeria phage LP-013, complete genome	1926-1959	0	1.0
NZ_CP020833_2	2.19\|575214\|34\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575214-575247	34	NC_021785	Listeria phage LP-110, complete genome	30287-30320	0	1.0
NZ_CP020833_2	2.19\|575214\|34\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575214-575247	34	MN128593	Listeria phage LP-031, complete genome	1926-1959	0	1.0
NZ_CP020833_2	2.19\|575214\|34\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575214-575247	34	KJ094021	Listeria phage LP-114, complete genome	57437-57470	0	1.0
NZ_CP020833_2	2.19\|575214\|34\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575214-575247	34	MN114082	Listeria phage LP-010, complete genome	1926-1959	0	1.0
NZ_CP020833_2	2.21\|575343\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575343-575378	36	NZ_LR134399	Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence	155760-155795	0	1.0
NZ_CP020833_2	2.23\|575470\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575470-575505	36	NC_003216	Listeria phage A118, complete genome	18563-18598	0	1.0
NZ_CP020833_2	2.23\|575470\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575470-575505	36	AJ242593	Bacteriophage A118 complete genome	18563-18598	0	1.0
NZ_CP020833_2	2.45\|576895\|35\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576895-576929	35	MH341452	Listeria phage PSU-VKH-LP040, complete genome	36072-36106	0	1.0
NZ_CP020833_2	2.47\|577025\|36\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	577025-577060	36	MH341452	Listeria phage PSU-VKH-LP040, complete genome	32247-32282	0	1.0
NZ_CP020833_2	2.51\|577285\|36\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	577285-577320	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	8839-8874	0	1.0
NZ_CP020833_2	2.51\|577285\|36\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	577285-577320	36	NC_009813	Listeria phage B054, complete genome	8839-8874	0	1.0
NZ_CP020833_3	3.10\|2712067\|30\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	2712067-2712096	30	KJ094023	Listeria phage LP-101, complete genome	12977-13006	0	1.0
NZ_CP020833_2	2.8\|574495\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574495-574530	36	DQ003642	Listeria phage A006, complete genome	13461-13496	1	0.972
NZ_CP020833_2	2.9\|574560\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574560-574595	36	MH341451	Listeria phage PSU-VKH-LP019, complete genome	2049-2084	1	0.972
NZ_CP020833_2	2.9\|574560\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574560-574595	36	KP399677	Listeria phage vB_LmoS_188, complete genome	2058-2093	1	0.972
NZ_CP020833_2	2.9\|574560\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574560-574595	36	DQ003642	Listeria phage A006, complete genome	2061-2096	1	0.972
NZ_CP020833_2	2.19\|575214\|34\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575214-575247	34	JX442241	Listeria phage P70, complete genome	7441-7474	1	0.971
NZ_CP020833_2	2.19\|575214\|34\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575214-575247	34	JB137888	Sequence 7 from Patent WO2012159774	46206-46239	1	0.971
NZ_CP020833_2	2.47\|577025\|36\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	577025-577060	36	MH341451	Listeria phage PSU-VKH-LP019, complete genome	31286-31321	1	0.972
NZ_CP020833_3	3.3\|2711605\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711605-2711634	30	NC_003216	Listeria phage A118, complete genome	17377-17406	1	0.967
NZ_CP020833_3	3.3\|2711605\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711605-2711634	30	AJ242593	Bacteriophage A118 complete genome	17377-17406	1	0.967
NZ_CP020833_2	2.18\|575148\|37\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575148-575184	37	KJ094022	Listeria phage LP-030-3, complete genome	17326-17362	2	0.946
NZ_CP020833_2	2.18\|575148\|37\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575148-575184	37	DQ003637	Listeria phage A500, complete genome	8912-8948	2	0.946
NZ_CP020833_2	2.29\|575857\|36\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	575857-575892	36	KP399678	Listeria phage vB_LmoS_293, complete genome	1049-1084	2	0.944
NZ_CP020833_2	2.45\|576895\|35\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576895-576929	35	JB137888	Sequence 7 from Patent WO2012159774	64818-64852	2	0.943
NZ_CP020833_2	2.45\|576895\|35\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576895-576929	35	NC_009812	Listeria phage B025, complete genome	32443-32477	2	0.943
NZ_CP020833_2	2.45\|576895\|35\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576895-576929	35	KJ094023	Listeria phage LP-101, complete genome	32253-32287	2	0.943
NZ_CP020833_2	2.47\|577025\|36\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	577025-577060	36	KP399677	Listeria phage vB_LmoS_188, complete genome	31581-31616	2	0.944
NZ_CP020833_2	2.47\|577025\|36\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	577025-577060	36	KP399678	Listeria phage vB_LmoS_293, complete genome	32818-32853	2	0.944
NZ_CP020833_2	2.48\|577090\|37\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	577090-577126	37	MH341452	Listeria phage PSU-VKH-LP040, complete genome	201-237	2	0.946
NZ_CP020833_3	3.4\|2711671\|30\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	2711671-2711700	30	KP399678	Listeria phage vB_LmoS_293, complete genome	2467-2496	2	0.933
NZ_CP020833_3	3.10\|2712067\|30\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	2712067-2712096	30	MT500540	Listeria phage LP-HM00113468, complete genome	31948-31977	2	0.933
NZ_CP020833_3	3.10\|2712067\|30\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	2712067-2712096	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	222504-222533	2	0.933
NZ_CP020833_3	3.9\|2712001\|30\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	2712001-2712030	30	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	424844-424873	5	0.833
NZ_CP020833_3	3.9\|2712001\|30\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	2712001-2712030	30	NZ_CP016290	Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence	548135-548164	5	0.833
NZ_CP020833_2	2.2\|574103\|35\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574103-574137	35	JX157235	Uncultured phage contig22 genomic sequence	2378-2412	7	0.8
NZ_CP020833_2	2.17\|575083\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	575083-575118	36	NC_018686	Bacillus thuringiensis MC28 plasmid pMC183, complete sequence	116228-116263	7	0.806
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	NZ_CP029570	Acinetobacter baumannii strain DA33098 plasmid pDA33098-108, complete sequence	60796-60825	7	0.767
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	NZ_CP027122	Acinetobacter baumannii strain AR_0056 plasmid unnamed1, complete sequence	50797-50826	7	0.767
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	NZ_CP027608	Acinetobacter baumannii strain AR_0102 plasmid unnamed1, complete sequence	44202-44231	7	0.767
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	NZ_CP026705	Acinetobacter baumannii strain AR_0056 plasmid tig00000058_pilon, complete sequence	30996-31025	7	0.767
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	NZ_CP035046	Acinetobacter baumannii strain ABUH793 plasmid p107.0Kbp, complete sequence	45158-45187	7	0.767
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	NZ_CP031445	Acinetobacter baumannii strain MDR-UNC plasmid unnamed1, complete sequence	66833-66862	7	0.767
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	NZ_CP040426	Acinetobacter baumannii strain PB364 plasmid pPB364_1, complete sequence	15361-15390	7	0.767
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	MK504446	Lactobacillus phage SAC12B, complete genome	116668-116697	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	CP046513	Bacillus cereus strain JHU plasmid p2, complete sequence	88884-88913	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	NC_011282	Klebsiella variicola strain 342 plasmid pKP187, complete sequence	111163-111192	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	208192-208221	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	NC_027364	Escherichia phage PBECO 4, complete genome	16638-16667	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	MH383160	Escherichia phage UB, complete genome	77226-77255	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	MK327931	Escherichia phage vB_EcoM_G17, complete genome	233486-233515	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	AP013509	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-U-MedDCM-OCT-S35-C26	29448-29477	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	LC494302	Escherichia phage SP27 DNA, complete genome	268251-268280	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	209872-209901	7	0.767
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	KM507819	Escherichia phage 121Q, complete genome	268995-269024	7	0.767
NZ_CP020833_2	2.40\|576573\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576573-576606	34	KT070867	Bacillus phage PBC2, complete genome	75389-75422	8	0.765
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	795158-795187	8	0.733
NZ_CP020833_3	3.13\|2712265\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712265-2712294	30	MN692946	Marine virus AFVG_117M27, complete genome	11362-11391	8	0.733
NZ_CP020833_3	3.13\|2712265\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712265-2712294	30	MN694368	Marine virus AFVG_250M429, complete genome	11362-11391	8	0.733
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	166948-166977	8	0.733
NZ_CP020833_2	2.13\|574818\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574818-574853	36	MN692985	Marine virus AFVG_117M57, complete genome	28377-28412	9	0.75
NZ_CP020833_2	2.14\|574883\|34\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574883-574916	34	CM009044	Acinetobacter baumannii strain ZQ5 plasmid p3ZQ5, complete sequence, whole genome shotgun sequence	4342-4375	9	0.735
NZ_CP020833_2	2.30\|575922\|35\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	575922-575956	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
NZ_CP020833_2	2.42\|576701\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576701-576734	34	MT774393	CrAssphage cr127_1, complete genome	1232-1265	9	0.735
NZ_CP020833_3	3.2\|2711539\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2711539-2711568	30	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	281290-281319	9	0.7
NZ_CP020833_3	3.15\|2712397\|30\|NZ_CP020833\|CRISPRCasFinder,CRT	2712397-2712426	30	MT774379	CrAssphage cr118_1, complete genome	81160-81189	9	0.7
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP025426	Enterococcus faecium strain SC4 plasmid p1, complete sequence	34110-34143	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_KP342511	Enterococcus faecium isolate N12-493 plasmid pEfm12493, complete sequence	55443-55476	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP040369	Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence	62406-62439	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP013995	Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence	40783-40816	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135298	Enterococcus faecium isolate E7429 plasmid 2	33607-33640	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135333	Enterococcus faecium isolate E7471 plasmid 3	5519-5552	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	MT074686	Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence	28329-28362	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP027513	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed1, complete sequence	34069-34102	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135244	Enterococcus faecium isolate E6988 plasmid 2	5131-5164	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135279	Enterococcus faecium isolate E6975 plasmid 2	5132-5165	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135294	Enterococcus faecium isolate E7237 plasmid 2	30352-30385	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135259	Enterococcus faecium isolate E4457 plasmid 2	39428-39461	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135182	Enterococcus faecium isolate E1774 plasmid 2	5519-5552	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NC_021995	Enterococcus faecium Aus0085 plasmid p2, complete sequence	36714-36747	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135436	Enterococcus faecium isolate E8691 plasmid 2	37748-37781	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135483	Enterococcus faecium isolate E4456 plasmid 2	34583-34616	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135204	Enterococcus faecium isolate E7171 plasmid 2	33095-33128	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135227	Enterococcus faecium isolate E7025 plasmid 2	5519-5552	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135489	Enterococcus faecium isolate E8414 plasmid 2	34674-34707	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135365	Enterococcus faecium isolate E8195 plasmid 2	33607-33640	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135415	Enterococcus faecium isolate E8328 plasmid 2	33607-33640	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135395	Enterococcus faecium isolate E8290 plasmid 2	33607-33640	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NC_021987	Enterococcus faecium Aus0085 plasmid p1, complete sequence	111873-111906	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135345	Enterococcus faecium isolate E8202 plasmid 2	33607-33640	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135409	Enterococcus faecium isolate E8284 plasmid 2	33607-33640	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135385	Enterococcus faecium isolate E7933 plasmid 2	36357-36390	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135373	Enterococcus faecium isolate E8172 plasmid 2	37816-37849	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP014530	Enterococcus faecium strain E745 plasmid pl1, complete sequence	11434-11467	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP014534	Enterococcus faecium strain E745 plasmid pl5, complete sequence	994-1027	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP044275	Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence	33607-33640	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NC_022883	Enterococcus mundtii QU 25 plasmid pQY082, complete sequence	60674-60707	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135192	Enterococcus faecium isolate E4438 plasmid 2	33274-33307	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP018066	Enterococcus faecium strain E1 plasmid pE1_230, complete sequence	27545-27578	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_AP019409	Enterococcus faecium strain SMVRE20 plasmid pSMVRE20L, complete sequence	5519-5552	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	LR135186	Enterococcus faecium isolate E4413 genome assembly, plasmid: 2	36173-36206	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP027518	Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence	190131-190164	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135340	Enterococcus faecium isolate E7356 plasmid 2	210440-210473	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135246	Enterococcus faecium isolate E6988 plasmid 4	32801-32834	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135237	Enterococcus faecium isolate E7067 plasmid 3	31633-31666	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135476	Enterococcus faecium isolate E8423 plasmid 2	191004-191037	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135222	Enterococcus faecium isolate E7040 plasmid 4	20091-20124	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR135358	Enterococcus faecium isolate E7948 plasmid 2	209286-209319	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LR134108	Enterococcus faecium isolate E6043 plasmid 4	13589-13622	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP011829	Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence	24297-24330	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LN999988	Enterococcus faecium isolate EFE11651 plasmid II, complete sequence	63927-63960	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP025687	Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence	74757-74790	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP032307	Enterococcus faecium strain HY07 plasmid unnamed2, complete sequence	32221-32254	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP035655	Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence	192600-192633	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	186262-186295	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP035667	Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence	186148-186181	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP035649	Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence	192636-192669	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP033207	Enterococcus faecium strain RBWH1 plasmid pRBWH1.1, complete sequence	86985-87018	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_CP018129	Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence	206372-206405	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	NZ_LT598664	Enterococcus faecium isolate Ef_aus00233 plasmid 2	134652-134685	10	0.706
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	241834-241867	11	0.676
NZ_CP020833_2	2.26\|575664\|34\|NZ_CP020833\|CRISPRCasFinder,CRT	575664-575697	34	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	256750-256783	11	0.676
NZ_CP020833_2	2.40\|576573\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576573-576606	34	NC_031922	Synechococcus phage S-CAM9 isolate 1109NB16, complete genome	146996-147029	12	0.647
NZ_CP020833_2	2.40\|576573\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576573-576606	34	KU686204	Synechococcus phage S-CAM9 isolate 0808SB05, complete genome	146978-147011	12	0.647
NZ_CP020833_2	2.40\|576573\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576573-576606	34	KU686205	Synechococcus phage S-CAM9 isolate 0908SB82, complete genome	146825-146858	12	0.647

1. spacer 2.18|575148|37|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ttcgtattcgtaaatatcattaactccaaaagcgagc	CRISPR spacer
ttcgtattcgtaaatatcattaactccaaaagcgagc	Protospacer
*************************************

2. spacer 2.18|575148|37|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ttcgtattcgtaaatatcattaactccaaaagcgagc	CRISPR spacer
ttcgtattcgtaaatatcattaactccaaaagcgagc	Protospacer
*************************************

3. spacer 2.19|575214|34|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 0, identity: 1.0

tcaaatgcttttatcgtatatgattctacattag	CRISPR spacer
tcaaatgcttttatcgtatatgattctacattag	Protospacer
**********************************

4. spacer 2.19|575214|34|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 0, identity: 1.0

tcaaatgcttttatcgtatatgattctacattag	CRISPR spacer
tcaaatgcttttatcgtatatgattctacattag	Protospacer
**********************************

5. spacer 2.19|575214|34|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 0, identity: 1.0

tcaaatgcttttatcgtatatgattctacattag	CRISPR spacer
tcaaatgcttttatcgtatatgattctacattag	Protospacer
**********************************

6. spacer 2.19|575214|34|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 0, identity: 1.0

tcaaatgcttttatcgtatatgattctacattag	CRISPR spacer
tcaaatgcttttatcgtatatgattctacattag	Protospacer
**********************************

7. spacer 2.19|575214|34|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 0, identity: 1.0

tcaaatgcttttatcgtatatgattctacattag	CRISPR spacer
tcaaatgcttttatcgtatatgattctacattag	Protospacer
**********************************

8. spacer 2.19|575214|34|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 0, identity: 1.0

tcaaatgcttttatcgtatatgattctacattag	CRISPR spacer
tcaaatgcttttatcgtatatgattctacattag	Protospacer
**********************************

9. spacer 2.21|575343|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 0, identity: 1.0

gtttgttgtaacaggcacagcgagcgaaacggaaat	CRISPR spacer
gtttgttgtaacaggcacagcgagcgaaacggaaat	Protospacer
************************************

10. spacer 2.23|575470|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

11. spacer 2.23|575470|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

ctggttactcaactggcgacagtaatacacctcaat	CRISPR spacer
ctggttactcaactggcgacagtaatacacctcaat	Protospacer
************************************

12. spacer 2.45|576895|35|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

tacgataatacgagtttttcaataggcagacctcc	CRISPR spacer
tacgataatacgagtttttcaataggcagacctcc	Protospacer
***********************************

13. spacer 2.47|577025|36|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 0, identity: 1.0

ggtgaattcgtcacaagtattaagtcaattacagcg	CRISPR spacer
ggtgaattcgtcacaagtattaagtcaattacagcg	Protospacer
************************************

14. spacer 2.51|577285|36|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 0, identity: 1.0

aaaggtaaaaatattcttgctgtggcaggtcctgat	CRISPR spacer
aaaggtaaaaatattcttgctgtggcaggtcctgat	Protospacer
************************************

15. spacer 2.51|577285|36|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 0, identity: 1.0

aaaggtaaaaatattcttgctgtggcaggtcctgat	CRISPR spacer
aaaggtaaaaatattcttgctgtggcaggtcctgat	Protospacer
************************************

16. spacer 3.10|2712067|30|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

gccaaaatcggtgggtacttttttggtaat	CRISPR spacer
gccaaaatcggtgggtacttttttggtaat	Protospacer
******************************

17. spacer 2.8|574495|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

ctttatcatttacagaagcgtctaagcccagcttgt	CRISPR spacer
ctttatcatttacagaagcgtctaatcccagcttgt	Protospacer
************************* **********

18. spacer 2.9|574560|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 1, identity: 0.972

atttaatcactcctttctatatattttcataattcc	CRISPR spacer
atttaatcactcctttctatatatcttcataattcc	Protospacer
************************.***********

19. spacer 2.9|574560|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 1, identity: 0.972

atttaatcactcctttctatatattttcataattcc	CRISPR spacer
atttaatcactcctttctatatatcttcataattcc	Protospacer
************************.***********

20. spacer 2.9|574560|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

atttaatcactcctttctatatattttcataattcc	CRISPR spacer
atttaatcactcctttctatatatcttcataattcc	Protospacer
************************.***********

21. spacer 2.19|575214|34|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.971

tcaaatgcttttatcgtatatgattctacattag	CRISPR spacer
tcaaacgcttttatcgtatatgattctacattag	Protospacer
*****.****************************

22. spacer 2.19|575214|34|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 1, identity: 0.971

tcaaatgcttttatcgtatatgattctacattag	CRISPR spacer
tcaaacgcttttatcgtatatgattctacattag	Protospacer
*****.****************************

23. spacer 2.47|577025|36|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 1, identity: 0.972

ggtgaattcgtcacaagtattaagtcaattacagcg	CRISPR spacer
ggtgaattcgtcacaagtattaagtcaattacagag	Protospacer
********************************** *

24. spacer 3.3|2711605|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.967

gacaactggacaaacaggtttttttgttaa	CRISPR spacer
aacaactggacaaacaggtttttttgttaa	Protospacer
.*****************************

25. spacer 3.3|2711605|30|NZ_CP020833|CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.967

gacaactggacaaacaggtttttttgttaa	CRISPR spacer
aacaactggacaaacaggtttttttgttaa	Protospacer
.*****************************

26. spacer 2.18|575148|37|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.946

ttcgtattcgtaaatatcattaactccaaaagcgagc	CRISPR spacer
ctcgtattcgtaaatatcgttaactccaaaagcgagc	Protospacer
.*****************.******************

27. spacer 2.18|575148|37|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.946

ttcgtattcgtaaatatcattaactccaaaagcgagc	CRISPR spacer
ttcatattcgtaaatatcgttaactccaaaagcgagc	Protospacer
***.**************.******************

28. spacer 2.29|575857|36|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ctcataaggatttcgaggcgggttaaacgacatgta	CRISPR spacer
ctcataaggattgcgaggcgggttaaatgacatgta	Protospacer
************ **************.********

29. spacer 2.45|576895|35|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 2, identity: 0.943

tacgataatacgagtttttcaataggcagacctcc	CRISPR spacer
tacgataatacgagattttcaataggtagacctcc	Protospacer
************** ***********.********

30. spacer 2.45|576895|35|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

tacgataatacgagtttttcaataggcagacctcc	CRISPR spacer
tacgataatacgagattttcaataggtagacctcc	Protospacer
************** ***********.********

31. spacer 2.45|576895|35|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.943

tacgataatacgagtttttcaataggcagacctcc	CRISPR spacer
tacgataatacgagattttcaataggtagacctcc	Protospacer
************** ***********.********

32. spacer 2.47|577025|36|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 2, identity: 0.944

ggtgaattcgtcacaagtattaagtcaattacagcg	CRISPR spacer
ggtgaattcgtcacaagtattaagtcaattacggag	Protospacer
********************************.* *

33. spacer 2.47|577025|36|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ggtgaattcgtcacaagtattaagtcaattacagcg	CRISPR spacer
ggtgaattcgtcacaagtattaagtcaattacggag	Protospacer
********************************.* *

34. spacer 2.48|577090|37|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 2, identity: 0.946

gttattaaaggctatatagacaaggtcttaagcgaac	CRISPR spacer
gttattaaaggctatatagacaaggttttaagtgaac	Protospacer
**************************.*****.****

35. spacer 3.4|2711671|30|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.933

agctcgttcggcgtgtctgactgataaagt	CRISPR spacer
agctcgttcggcgtgtctgactgatatagc	Protospacer
************************** **.

36. spacer 3.10|2712067|30|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 2, identity: 0.933

gccaaaatcggtgggtacttttttggtaat	CRISPR spacer
gccaaaattggtgggtacttttttgggaat	Protospacer
********.***************** ***

37. spacer 3.10|2712067|30|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.933

gccaaaatcggtgggtacttttttggtaat	CRISPR spacer
gccaaaatcggtgggtacttctttggaaat	Protospacer
********************.***** ***

38. spacer 3.9|2712001|30|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

caaacgtcgtctaactgtttgatt--ttccag	CRISPR spacer
aaaacgtcatctaactgttagattcattcc--	Protospacer
 *******.********** ****  ****

39. spacer 3.9|2712001|30|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.833

caaacgtcgtctaactgtttgatt--ttccag	CRISPR spacer
aaaacgtcatctaactgttagattcattcc--	Protospacer
 *******.********** ****  ****

40. spacer 2.2|574103|35|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to JX157235 (Uncultured phage contig22 genomic sequence) position: , mismatch: 7, identity: 0.8

gtcaaattgctcattaaaataaagagggttagtaa	CRISPR spacer
actgtactgctcattaaaatatagagggttagtaa	Protospacer
.... *.************** *************

41. spacer 2.17|575083|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to NC_018686 (Bacillus thuringiensis MC28 plasmid pMC183, complete sequence) position: , mismatch: 7, identity: 0.806

caataaacggctctgtataataagctgttaaaacac	CRISPR spacer
taaccactggatctgtataataagctgttaacacac	Protospacer
.**. * .** ******************** ****

42. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP029570 (Acinetobacter baumannii strain DA33098 plasmid pDA33098-108, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

43. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP027122 (Acinetobacter baumannii strain AR_0056 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

44. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP027608 (Acinetobacter baumannii strain AR_0102 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

45. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP026705 (Acinetobacter baumannii strain AR_0056 plasmid tig00000058_pilon, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

46. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP035046 (Acinetobacter baumannii strain ABUH793 plasmid p107.0Kbp, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

47. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP031445 (Acinetobacter baumannii strain MDR-UNC plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

48. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP040426 (Acinetobacter baumannii strain PB364 plasmid pPB364_1, complete sequence) position: , mismatch: 7, identity: 0.767

----caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ttgctaaa----ggaactgatcttccttgtcggc	Protospacer
    .***    ***** ***************

49. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to MK504446 (Lactobacillus phage SAC12B, complete genome) position: , mismatch: 7, identity: 0.767

caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
cagcacagggaacgtatcttcattgtcgga	Protospacer
**. .. ******* ****** ********

50. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to CP046513 (Bacillus cereus strain JHU plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
ttgtgaaaaatattacagaaaggttgagtc	Protospacer
************* *********  *   .

51. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NC_011282 (Klebsiella variicola strain 342 plasmid pKP187, complete sequence) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
ttgtgaaaaatagagcagaaaggatatgtt	Protospacer
************ *.********* ..  *

52. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
agtttaaaattataacagaaaggaatctat	Protospacer
   * **** *************** **.*

53. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
agtttaaaattataacagaaaggaatctat	Protospacer
   * **** *************** **.*

54. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to MH383160 (Escherichia phage UB, complete genome) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
agtttaaaattataacagaaaggaatctat	Protospacer
   * **** *************** **.*

55. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
agtttaaaattataacagaaaggaatctat	Protospacer
   * **** *************** **.*

56. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to AP013509 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-U-MedDCM-OCT-S35-C26) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
ttatgaaaaatataacagaaaagcaaatcc	Protospacer
**.******************.* *. * .

57. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
agtttaaaattataacagaaaggaatctat	Protospacer
   * **** *************** **.*

58. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
agtttaaaattataacagaaaggaatctat	Protospacer
   * **** *************** **.*

59. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 7, identity: 0.767

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
agtttaaaattataacagaaaggaatctat	Protospacer
   * **** *************** **.*

60. spacer 2.40|576573|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to KT070867 (Bacillus phage PBC2, complete genome) position: , mismatch: 8, identity: 0.765

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
ataatttatccatatgttcttgaatcttgtttat	Protospacer
**** ******.*************. * *.* .

61. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 8, identity: 0.733

caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ggtaatcgggaaccgatcttccttggcgat	Protospacer
 . *.******** *********** **.

62. spacer 3.13|2712265|30|NZ_CP020833|CRISPRCasFinder,CRT matches to MN692946 (Marine virus AFVG_117M27, complete genome) position: , mismatch: 8, identity: 0.733

ttagatatgcgccaacataaatatcctatt	CRISPR spacer
cattatatccgccaacataaacatcctttg	Protospacer
.   **** ************.***** *

63. spacer 3.13|2712265|30|NZ_CP020833|CRISPRCasFinder,CRT matches to MN694368 (Marine virus AFVG_250M429, complete genome) position: , mismatch: 8, identity: 0.733

ttagatatgcgccaacataaatatcctatt	CRISPR spacer
cattatatccgccaacataaacatcctttg	Protospacer
.   **** ************.***** *

64. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 8, identity: 0.733

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
atgtgaaaaatataacataaatgaaaactc	Protospacer
 **************** *** ***. . .

65. spacer 2.13|574818|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to MN692985 (Marine virus AFVG_117M57, complete genome) position: , mismatch: 9, identity: 0.75

ttattcattgctgttttaggcgtattttcttttttt	CRISPR spacer
tgccatgctgctgttttaggcatattttgttttttt	Protospacer
*  . ...*************.****** *******

66. spacer 2.14|574883|34|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to CM009044 (Acinetobacter baumannii strain ZQ5 plasmid p3ZQ5, complete sequence, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.735

aaaaatatccttgttaaattgacgatttaatgag	CRISPR spacer
ccaaatatccttgttaaaatgaccatgaattgta	Protospacer
  **************** **** **  * ** .

67. spacer 2.30|575922|35|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . **

68. spacer 2.42|576701|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to MT774393 (CrAssphage cr127_1, complete genome) position: , mismatch: 9, identity: 0.735

gtgcttttcgaacatctttttctatatctacatg	CRISPR spacer
cttctttttgaacatctttttctttatctgttaa	Protospacer
 * *****.************** *****..  .

69. spacer 3.2|2711539|30|NZ_CP020833|CRISPRCasFinder,CRT matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 9, identity: 0.7

caaagtcgggaacggatcttccttgtcgga	CRISPR spacer
ggtgatcgggaaccgatcttccttggcgat	Protospacer
 . ..******** *********** **.

70. spacer 3.15|2712397|30|NZ_CP020833|CRISPRCasFinder,CRT matches to MT774379 (CrAssphage cr118_1, complete genome) position: , mismatch: 9, identity: 0.7

ttgtgaaaaatataacagaaaggaagctgt	CRISPR spacer
aaatgaaaaatataacagaaaaaaagaaac	Protospacer
  .******************..***  ..

71. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP025426 (Enterococcus faecium strain SC4 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

72. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_KP342511 (Enterococcus faecium isolate N12-493 plasmid pEfm12493, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

73. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP040369 (Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

74. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

75. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135298 (Enterococcus faecium isolate E7429 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

76. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135333 (Enterococcus faecium isolate E7471 plasmid 3) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

77. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to MT074686 (Enterococcus faecium strain E1077 plasmid pE1077-217, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

78. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP027513 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

79. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135244 (Enterococcus faecium isolate E6988 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

80. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

81. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135294 (Enterococcus faecium isolate E7237 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

82. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135259 (Enterococcus faecium isolate E4457 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

83. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135182 (Enterococcus faecium isolate E1774 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

84. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NC_021995 (Enterococcus faecium Aus0085 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

85. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135436 (Enterococcus faecium isolate E8691 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

86. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135483 (Enterococcus faecium isolate E4456 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

87. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135204 (Enterococcus faecium isolate E7171 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

88. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135227 (Enterococcus faecium isolate E7025 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

89. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135489 (Enterococcus faecium isolate E8414 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

90. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135365 (Enterococcus faecium isolate E8195 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

91. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135415 (Enterococcus faecium isolate E8328 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

92. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135395 (Enterococcus faecium isolate E8290 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

93. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NC_021987 (Enterococcus faecium Aus0085 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

94. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135345 (Enterococcus faecium isolate E8202 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

95. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135409 (Enterococcus faecium isolate E8284 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

96. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135385 (Enterococcus faecium isolate E7933 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

97. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135373 (Enterococcus faecium isolate E8172 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

98. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP014530 (Enterococcus faecium strain E745 plasmid pl1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

99. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP014534 (Enterococcus faecium strain E745 plasmid pl5, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

100. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP044275 (Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

101. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NC_022883 (Enterococcus mundtii QU 25 plasmid pQY082, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

102. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135192 (Enterococcus faecium isolate E4438 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

103. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP018066 (Enterococcus faecium strain E1 plasmid pE1_230, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

104. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_AP019409 (Enterococcus faecium strain SMVRE20 plasmid pSMVRE20L, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

105. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to LR135186 (Enterococcus faecium isolate E4413 genome assembly, plasmid: 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

106. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

107. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135340 (Enterococcus faecium isolate E7356 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

108. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135246 (Enterococcus faecium isolate E6988 plasmid 4) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

109. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135237 (Enterococcus faecium isolate E7067 plasmid 3) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

110. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135476 (Enterococcus faecium isolate E8423 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

111. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135222 (Enterococcus faecium isolate E7040 plasmid 4) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

112. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR135358 (Enterococcus faecium isolate E7948 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

113. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LR134108 (Enterococcus faecium isolate E6043 plasmid 4) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

114. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP011829 (Enterococcus faecium strain UW8175 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

115. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LN999988 (Enterococcus faecium isolate EFE11651 plasmid II, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

116. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP025687 (Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

117. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP032307 (Enterococcus faecium strain HY07 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

118. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

119. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

120. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

121. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

122. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP033207 (Enterococcus faecium strain RBWH1 plasmid pRBWH1.1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

123. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_CP018129 (Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

124. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to NZ_LT598664 (Enterococcus faecium isolate Ef_aus00233 plasmid 2) position: , mismatch: 10, identity: 0.706

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ggtgttcaaacatcttttcaatttgttcgtttaa	Protospacer
.* .   ********************  ***.

125. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
cccttgttaacatcttttgaatttcttgttttac	Protospacer
     .  ********** ***** *******.*

126. spacer 2.26|575664|34|NZ_CP020833|CRISPRCasFinder,CRT matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

agaaaaaaaacatcttttcaatttgttgttttgc	CRISPR spacer
ccttggctaacatcttttgaatttcttgttttac	Protospacer
    ..  ********** ***** *******.*

127. spacer 2.40|576573|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NC_031922 (Synechococcus phage S-CAM9 isolate 1109NB16, complete genome) position: , mismatch: 12, identity: 0.647

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
caggattatccgtatcttcttggattgtagaagg	Protospacer
  ..*********** ******.*****

128. spacer 2.40|576573|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to KU686204 (Synechococcus phage S-CAM9 isolate 0808SB05, complete genome) position: , mismatch: 12, identity: 0.647

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
caggattatccgtatcttcttggattgtagaagg	Protospacer
  ..*********** ******.*****

129. spacer 2.40|576573|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to KU686205 (Synechococcus phage S-CAM9 isolate 0908SB82, complete genome) position: , mismatch: 12, identity: 0.647

ataaattatccgtatgttcttgaattgtttcttc	CRISPR spacer
caggattatccgtatcttcttggattgtagaagg	Protospacer
  ..*********** ******.*****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

118026 : 124551

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721739.1\|118026_118479_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|118484_118820_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003732219.1\|119036_119465_+	hypothetical protein	NA	NA	NA	NA
WP_003735200.1\|119476_119893_+	hypothetical protein	A8ASQ1	Listeria_phage	1.7e-20	38.6
WP_003732221.1\|120170_120560_+	DUF5072 domain-containing protein	NA	NA	NA	NA
WP_003721744.1\|120572_121085_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003740132.1\|121132_121435_+	hypothetical protein	NA	NA	NA	NA
WP_072217178.1\|121476_121881_+	phenylalanine racemase	NA	NA	NA	NA
WP_085399942.1\|121867_123736_+	hypothetical protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_061394756.1\|123732_124551_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	4.2e-39	35.0

DBSCAN-SWA_2

1152018 : 1159441

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|1152018_1152402_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_015454559.1\|1152423_1153407_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_014930875.1\|1153421_1154435_+	glycosyltransferase	A0A1V0SAH6	Catovirus	6.0e-11	32.0
WP_003721509.1\|1154643_1156134_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_015454563.1\|1156145_1156970_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	3.3e-68	52.9
WP_009931485.1\|1156982_1157291_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_045131473.1\|1157351_1157756_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_077955612.1\|1157884_1159441_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.0e-17	28.1

DBSCAN-SWA_3

1247502 : 1356968

112

Listeria_phage(69.57%)

integrase,protease,terminase,tail,capsid,holin,tRNA,portal

attL 1250403:1250418|attR 1291392:1291407

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721619.1\|1247502_1248555_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.3e-29	34.9
WP_085400368.1\|1248554_1250963_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
1250403:1250418	attL	NA	NA	NA	NA
WP_003721621.1\|1251123_1251825_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-33	35.8
WP_085400370.1\|1251838_1255249_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_003721623.1\|1255346_1255799_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_085400373.1\|1255814_1259015_+	MMPL family transporter	NA	NA	NA	NA
WP_085400376.1\|1259118_1259793_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	9.8e-50	47.3
WP_085400380.1\|1259830_1260757_-	ribonuclease HIII	NA	NA	NA	NA
WP_003740576.1\|1260910_1261174_+	cell division protein ZapA	NA	NA	NA	NA
WP_003723849.1\|1261173_1261716_+	CvpA family protein	NA	NA	NA	NA
WP_085400385.1\|1261808_1263521_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	6.6e-18	24.8
WP_085400389.1\|1263543_1265901_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	1.0e-21	50.4
WP_003723853.1\|1265982_1266294_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	5.4e-19	39.6
WP_085400391.1\|1266369_1268181_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_003729709.1\|1268373_1269588_+	aspartate kinase	NA	NA	NA	NA
WP_003733801.1\|1269643_1270138_-	YslB family protein	NA	NA	NA	NA
WP_003723856.1\|1270285_1271086_+	glutamate racemase	NA	NA	NA	NA
WP_003732780.1\|1271098_1271845_+	ribonuclease PH	NA	NA	NA	NA
WP_014600781.1\|1271848_1272460_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_012951515.1\|1272496_1273021_+	metallophosphoesterase	NA	NA	NA	NA
WP_031660124.1\|1273306_1274461_-\|integrase	site-specific integrase	A0A059T688	Listeria_phage	1.1e-207	94.8
WP_085400393.1\|1274748_1275165_-	hypothetical protein	NA	NA	NA	NA
WP_052750973.1\|1275216_1275669_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	2.3e-71	84.0
WP_003730992.1\|1275685_1276009_-	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	7.2e-35	71.0
WP_025370566.1\|1276812_1277136_+	hypothetical protein	NA	NA	NA	NA
WP_003730994.1\|1277283_1277487_-	hypothetical protein	NA	NA	NA	NA
WP_003730995.1\|1277553_1277745_+	helix-turn-helix transcriptional regulator	A0A059T5F8	Listeria_phage	5.4e-22	87.1
WP_003730996.1\|1277766_1278009_+	hypothetical protein	A8ATD2	Listeria_phage	3.9e-41	93.8
WP_023553860.1\|1278011_1278197_+	hypothetical protein	A8ATD3	Listeria_phage	5.4e-27	93.4
WP_031644438.1\|1278771_1279302_+	hypothetical protein	A0A059T5F9	Listeria_phage	8.9e-99	98.3
WP_031644439.1\|1279310_1279766_+	class I SAM-dependent methyltransferase	A8ATY8	Listeria_phage	1.7e-82	92.7
WP_014601511.1\|1279770_1280331_+	DUF1642 domain-containing protein	A8ATY9	Listeria_phage	9.4e-107	100.0
WP_009912778.1\|1280551_1281067_+	hypothetical protein	C9E2P0	Enterococcus_phage	1.8e-32	45.5
WP_068997557.1\|1281245_1281716_+	DUF1642 domain-containing protein	R4IBV9	Listeria_phage	2.5e-28	69.2
WP_031669126.1\|1281716_1282139_+	hypothetical protein	Q8W5W4	Listeria_phage	1.5e-69	95.0
WP_012951535.1\|1282305_1282689_+	hypothetical protein	A8ATE8	Listeria_phage	5.3e-61	92.9
WP_003731665.1\|1282690_1283170_+	siphovirus Gp157 family protein	R4IBM0	Listeria_phage	7.6e-57	76.7
WP_012951536.1\|1283189_1283879_+	AAA family ATPase	R4IDY8	Listeria_phage	3.1e-128	96.9
WP_077310975.1\|1283957_1285199_+	DEAD/DEAH box helicase	A8ATF1	Listeria_phage	1.2e-207	92.4
WP_069007862.1\|1285223_1285709_+	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	1.6e-86	97.5
WP_069011928.1\|1285731_1288005_+	DNA primase	R4IBW2	Listeria_phage	0.0e+00	94.8
WP_031669964.1\|1288339_1288654_+	VRR-NUC domain-containing protein	Q8W5V6	Listeria_phage	1.7e-52	98.1
WP_031659886.1\|1288766_1289300_+	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	2.2e-76	78.9
WP_003731655.1\|1289517_1289745_+	hypothetical protein	NA	NA	NA	NA
WP_009917712.1\|1289757_1290183_+	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	8.0e-74	100.0
WP_031669127.1\|1290280_1291024_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_026749920.1\|1291483_1291810_+	hypothetical protein	A0A059T5G5	Listeria_phage	8.3e-55	98.1
1291392:1291407	attR	NA	NA	NA	NA
WP_009928009.1\|1291809_1292124_+	HNH endonuclease	A8ATF8	Listeria_phage	3.8e-57	99.0
WP_061107421.1\|1292172_1292529_+	hypothetical protein	A8AT94	Listeria_phage	2.0e-46	99.0
WP_085400396.1\|1292525_1294169_+\|terminase	terminase large subunit	A8AT95	Listeria_phage	0.0e+00	98.4
WP_009928006.1\|1294178_1294568_-	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	4.8e-17	39.8
WP_009928005.1\|1294618_1295749_+\|portal	phage portal protein	A0A059T6F0	Listeria_phage	4.6e-209	95.5
WP_009928004.1\|1295745_1296462_+\|protease	Clp protease ClpP	A0A1S5SFF8	Streptococcus_phage	5.5e-67	57.4
WP_061107418.1\|1296488_1297640_+\|capsid	phage major capsid protein	A8AT98	Listeria_phage	2.7e-201	93.0
WP_003731645.1\|1297826_1298126_+	hypothetical protein	A8ATA0	Listeria_phage	5.3e-48	100.0
WP_045552979.1\|1298109_1298475_+	hypothetical protein	A8ATA1	Listeria_phage	2.3e-61	94.2
WP_045552980.1\|1298471_1298873_+	hypothetical protein	A8ATA2	Listeria_phage	2.0e-66	97.0
WP_061107417.1\|1298869_1299253_+	hypothetical protein	A8ATA3	Listeria_phage	4.4e-63	95.3
WP_012581455.1\|1299274_1299862_+\|tail	phage tail protein	A8ATA4	Listeria_phage	4.0e-108	100.0
WP_009917698.1\|1299933_1300266_+	hypothetical protein	A8ATA5	Listeria_phage	1.8e-52	99.1
WP_085400397.1\|1300481_1305404_+\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	94.6
WP_039389944.1\|1305400_1307050_+\|tail	phage tail protein	A0A059T682	Listeria_phage	0.0e+00	99.5
WP_039389947.1\|1307065_1309360_+	hypothetical protein	A0A059T7Y6	Listeria_phage	0.0e+00	95.0
WP_085400399.1\|1309349_1310444_+	carbohydrate-binding protein CenC	A0A059T7R4	Listeria_phage	2.8e-203	98.9
WP_003722523.1\|1310482_1310848_+	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_003722522.1\|1310860_1311142_+\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_085400401.1\|1311141_1311993_+	peptidase M15	A0A059T7Y8	Listeria_phage	1.7e-136	91.5
WP_031646272.1\|1312147_1312720_-	hypothetical protein	A0A059T7R6	Listeria_phage	2.3e-100	97.9
WP_031646274.1\|1312787_1313237_-	anti-CRISPR protein AcrIIA1	Q9T196	Listeria_phage	5.7e-70	91.9
WP_031646276.1\|1313242_1313614_-	anti-CRISPR protein AcrIIA2	A0A059T5F6	Listeria_phage	3.1e-58	93.5
WP_031646277.1\|1313647_1314025_-	anti-CRISPR protein AcrIIA3	A0A059T686	Listeria_phage	4.3e-63	92.0
WP_031646274.1\|1314093_1314543_-	anti-CRISPR protein AcrIIA1	Q9T196	Listeria_phage	5.7e-70	91.9
WP_031646276.1\|1314548_1314920_-	anti-CRISPR protein AcrIIA2	A0A059T5F6	Listeria_phage	3.1e-58	93.5
WP_031646277.1\|1314953_1315331_-	anti-CRISPR protein AcrIIA3	A0A059T686	Listeria_phage	4.3e-63	92.0
WP_031646278.1\|1315660_1315870_-	hypothetical protein	R4IBK5	Listeria_phage	7.5e-25	92.8
WP_012951563.1\|1316306_1316540_+	hypothetical protein	A8ATC5	Listeria_phage	1.6e-36	98.7
WP_003723560.1\|1317030_1318278_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.2e-106	51.8
WP_003723561.1\|1318261_1319092_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.3e-47	42.4
WP_003732792.1\|1319227_1320367_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_003732793.1\|1320447_1320843_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.7e-14	57.4
WP_003727524.1\|1320993_1321209_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003732794.1\|1321327_1321861_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|1321878_1322544_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|1322805_1323744_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1323858_1325142_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1325326_1326586_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723887.1\|1326704_1327271_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723888.1\|1327305_1327875_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|1327976_1328519_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|1328528_1329392_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003732797.1\|1329388_1330174_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	8.8e-26	39.2
WP_003732798.1\|1330307_1331168_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_009924617.1\|1331439_1333518_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.4e-107	37.7
WP_009924616.1\|1333580_1334885_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_009911635.1\|1335167_1336070_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
WP_003724001.1\|1336090_1336630_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_010989722.1\|1336643_1338053_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	4.9e-43	27.7
WP_003726695.1\|1338073_1338853_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_085400404.1\|1338955_1339375_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|1339396_1339708_+	hypothetical protein	NA	NA	NA	NA
WP_009932949.1\|1339710_1340583_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724132.1\|1340624_1341221_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003732802.1\|1341378_1341786_+	CoA-binding protein	NA	NA	NA	NA
WP_003723731.1\|1341966_1343934_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_031659513.1\|1343930_1346390_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	3.6e-102	31.6
WP_003723733.1\|1346472_1346940_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_068998451.1\|1347269_1349075_+	lmo1289 family class 1 internalin	NA	NA	NA	NA
WP_085400406.1\|1349406_1351203_+	class 1 internalin InlK	NA	NA	NA	NA
WP_003723736.1\|1351236_1353105_-	acetyltransferase	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_003723737.1\|1353317_1354016_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	1.3e-12	32.4
WP_003723738.1\|1354248_1355925_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_012951578.1\|1356050_1356968_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA

DBSCAN-SWA_4

1871538 : 1879824

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|1871538_1872105_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_003722244.1\|1872101_1873151_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	43.2
WP_003722245.1\|1873169_1874597_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_085400530.1\|1874581_1876801_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-159	41.2
WP_003733240.1\|1876793_1877477_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003722248.1\|1877480_1877726_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_085400533.1\|1877737_1878451_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	1.4e-41	37.8
WP_003729814.1\|1878531_1879824_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0

DBSCAN-SWA_5

2536595 : 2544439

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|2536595_2537567_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_003722605.1\|2537574_2538543_-	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722606.1\|2538544_2539420_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_085400772.1\|2539527_2541258_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	4.6e-176	54.2
WP_026750232.1\|2541299_2542361_-	galactose mutarotase	NA	NA	NA	NA
WP_003722609.1\|2542377_2543361_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.2e-50	36.9
WP_003732496.1\|2543479_2544439_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.9e-87	53.4

DBSCAN-SWA_6

2630899 : 2700539

Listeria_phage(87.04%)

integrase,protease,terminase,tail,capsid,holin,tRNA

attL 2662729:2662778|attR 2700627:2700676

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085400789.1\|2630899_2632570_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_003723610.1\|2632566_2633016_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_003723611.1\|2633093_2633747_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_003723612.1\|2633820_2634006_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_009924630.1\|2634040_2635363_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	2.6e-30	33.2
WP_003723614.1\|2635377_2636214_-	lipoyl-[GcvH]:protein N-lipoyltransferase	NA	NA	NA	NA
WP_003729274.1\|2636531_2636732_-	hypothetical protein	NA	NA	NA	NA
WP_003723616.1\|2636753_2637077_-	YxeA family protein	NA	NA	NA	NA
WP_085400791.1\|2637231_2638893_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003726112.1\|2639028_2639643_-	SdpI family protein	NA	NA	NA	NA
WP_003733267.1\|2639666_2640299_-	nicotinamidase	NA	NA	NA	NA
WP_003723621.1\|2640299_2640824_-	dihydrofolate reductase	NA	NA	NA	NA
WP_085400793.1\|2640826_2641825_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_003723623.1\|2641921_2642194_-	hypothetical protein	NA	NA	NA	NA
WP_003723624.1\|2642242_2643154_-	cation transporter	NA	NA	NA	NA
WP_085400795.1\|2643279_2647872_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_085400797.1\|2648092_2648920_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_085400799.1\|2649034_2649910_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003723278.1\|2649920_2650214_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_085400802.1\|2650240_2650408_-	hypothetical protein	NA	NA	NA	NA
WP_003723280.1\|2650476_2651145_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.0e-38	42.0
WP_010990019.1\|2651144_2652233_-	ABC transporter permease	NA	NA	NA	NA
WP_009924763.1\|2652311_2653691_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.3e-56	47.1
WP_009924764.1\|2653687_2654365_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.6e-58	48.0
WP_085400804.1\|2654411_2655197_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_003723285.1\|2655258_2655735_-	DUF1641 domain-containing protein	NA	NA	NA	NA
WP_085400806.1\|2655734_2658722_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA
WP_009931305.1\|2659219_2660062_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA
WP_085400809.1\|2660109_2661591_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_003723289.1\|2661691_2662579_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
2662729:2662778	attL	NA	NA	NA	NA
WP_003723290.1\|2663202_2663466_+	anti-CRISPR protein AcrIIA4	A0A2D0TCG7	unidentified_phage	1.9e-41	100.0
WP_085400811.1\|2663470_2663920_+	anti-CRISPR protein AcrIIA1	Q9T196	Listeria_phage	4.9e-74	96.6
WP_025370597.1\|2664162_2664864_-	DUF3800 domain-containing protein	R4IBV1	Listeria_phage	6.4e-129	97.8
WP_085400813.1\|2665011_2665857_-	peptidase M15	A0A059T7Y8	Listeria_phage	2.3e-136	92.2
WP_085400815.1\|2665856_2666123_-\|holin	phage holin	A0A059T684	Listeria_phage	8.9e-39	94.3
WP_009928179.1\|2666143_2666560_-	hypothetical protein	A0A059T5F5	Listeria_phage	9.3e-43	99.3
WP_009928178.1\|2666538_2666982_-	hypothetical protein	A0A059T6F6	Listeria_phage	6.8e-76	100.0
WP_085400818.1\|2667029_2669195_-	hypothetical protein	A8ATW1	Listeria_phage	0.0e+00	94.7
WP_003734108.1\|2669207_2670776_-	hypothetical protein	A8ATW0	Listeria_phage	3.1e-304	99.6
WP_085400820.1\|2670772_2675572_-\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	97.1
WP_077286899.1\|2675576_2675888_-	hypothetical protein	A0A0B5D116	Listeria_phage	3.4e-42	97.8
WP_003733698.1\|2675884_2676316_-	hypothetical protein	A8ATV7	Listeria_phage	4.0e-73	97.9
WP_003733697.1\|2676371_2677061_-	Ig domain-containing protein	A8ATV6	Listeria_phage	2.8e-100	85.6
WP_003725064.1\|2677065_2677437_-	hypothetical protein	A8ATV5	Listeria_phage	8.5e-64	100.0
WP_003733696.1\|2677433_2677751_-	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	4.6e-50	96.2
WP_085400822.1\|2677740_2678106_-	hypothetical protein	A8ATV3	Listeria_phage	1.3e-61	94.2
WP_003723785.1\|2678105_2678459_-	hypothetical protein	A8ATV2	Listeria_phage	8.4e-61	99.1
WP_085400824.1\|2678628_2679501_-	hypothetical protein	A0A0B5CTX8	Listeria_phage	3.6e-153	93.8
WP_085400826.1\|2679523_2680075_-	hypothetical protein	A8ATU9	Listeria_phage	2.5e-83	95.7
WP_085400828.1\|2680169_2681213_-\|capsid	minor capsid protein	A0A0B5D111	Listeria_phage	1.1e-196	97.4
WP_085400830.1\|2681217_2682777_-	hypothetical protein	A8ATU7	Listeria_phage	5.9e-292	96.3
WP_070776471.1\|2682791_2684111_-\|terminase	PBSX family phage terminase large subunit	A0A0B5CYJ6	Listeria_phage	5.3e-233	88.0
WP_085400832.1\|2684049_2684916_-\|terminase	terminase	A8ATU5	Listeria_phage	1.1e-13	67.6
WP_061106472.1\|2684950_2685184_-	hypothetical protein	NA	NA	NA	NA
WP_085400835.1\|2685444_2686017_-	sigma-70 family RNA polymerase sigma factor	A0A0B5D145	Listeria_phage	3.9e-92	90.0
WP_003734975.1\|2686110_2686266_-	DUF3954 domain-containing protein	A0A0B5D0E9	Listeria_phage	1.1e-22	98.0
WP_085400837.1\|2686410_2686815_-	hypothetical protein	A8AU00	Listeria_phage	9.3e-72	99.3
WP_121689798.1\|2686780_2686921_-	BH0509 family protein	A8ATZ9	Listeria_phage	7.7e-18	97.8
WP_085400839.1\|2686917_2687223_-	response regulator	A8ATZ8	Listeria_phage	1.1e-45	97.0
WP_085400842.1\|2687254_2687737_-	single-stranded DNA-binding protein	A8ASP5	Listeria_phage	6.5e-64	78.1
WP_085400845.1\|2687733_2687982_-	DUF3850 domain-containing protein	A0A059T7N3	Listeria_phage	9.8e-32	88.0
WP_085400847.1\|2687974_2688310_-	hypothetical protein	A8ATZ5	Listeria_phage	5.4e-09	96.6
WP_085400849.1\|2688309_2688498_-	hypothetical protein	NA	NA	NA	NA
WP_085400851.1\|2688494_2689010_-	hypothetical protein	C9E2P0	Enterococcus_phage	1.8e-32	46.2
WP_085400853.1\|2689006_2689276_-	hypothetical protein	A0A059T7S7	Listeria_phage	1.1e-39	93.0
WP_085400856.1\|2689275_2689659_-	hypothetical protein	A0A0B5CYR4	Listeria_phage	1.6e-36	59.3
WP_085400858.1\|2689655_2689901_-	hypothetical protein	A0A059T695	Listeria_phage	5.1e-33	87.7
WP_031641306.1\|2689897_2690077_-	hypothetical protein	A0A059T5G0	Listeria_phage	8.3e-25	98.3
WP_085400860.1\|2690073_2690646_-	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	1.0e-47	52.4
WP_085400862.1\|2690642_2691455_-	DNA adenine methylase	Q8W5X3	Listeria_phage	3.1e-151	95.6
WP_085400867.1\|2691826_2692744_-	hypothetical protein	A8ATY7	Listeria_phage	5.3e-22	32.5
WP_003725086.1\|2692773_2693589_-	recombinase RecT	A8ATY6	Listeria_phage	4.2e-148	97.4
WP_031646021.1\|2693591_2694551_-	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	1.9e-176	98.4
WP_039385072.1\|2694783_2694972_-	hypothetical protein	Q9T175	Listeria_phage	4.8e-23	83.9
WP_085400869.1\|2695074_2695281_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_085400871.1\|2695270_2695801_-	hypothetical protein	A0A0B5D173	Listeria_phage	7.9e-79	89.6
WP_085400874.1\|2695924_2696704_-	phage antirepressor Ant	A0A0B5CTU1	Listeria_phage	1.1e-137	95.7
WP_069015680.1\|2696716_2696992_-	hypothetical protein	A8ASM5	Listeria_phage	4.9e-40	85.1
WP_069015679.1\|2696988_2697225_-	hypothetical protein	A0A059T5E9	Listeria_phage	8.1e-36	96.2
WP_026747215.1\|2697245_2697449_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039381694.1\|2697624_2697930_+	helix-turn-helix transcriptional regulator	A0A059T669	Listeria_phage	4.0e-27	64.3
WP_012951966.1\|2697960_2698452_+	hypothetical protein	A8ATX4	Listeria_phage	2.9e-91	99.4
WP_077951825.1\|2698474_2698693_+	zinc-ribbon domain-containing protein	A0A059T6E3	Listeria_phage	1.3e-32	95.8
WP_003724017.1\|2698707_2699313_+	hypothetical protein	NA	NA	NA	NA
WP_003724018.1\|2699375_2700539_+\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	4.4e-50	31.2
2700627:2700676	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP020833.1|WP_003723290.1|2663202_2663466_+|anti-CRISPR-protein-AcrIIA4

Click the colored protein region to show detailed information

Acr_ID: NZ_CP020833.1|WP_069015680.1|2696716_2696992_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP020833.1|WP_069015679.1|2696988_2697225_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP020833.1|WP_003723290.1|2663202_2663466_+|anti-CRISPR-protein-AcrIIA4

2663202_2663466_+

87 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|14	1.0	1	1.0

2630899-2700539

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP020833_2	Unclear	2.10\|574625\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574625-574660	36	2662768-2662803	0
NZ_CP020833_2	Unclear	2.42\|576701\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576701-576734	34	2663870-2663837	0
NZ_CP020833_2	Unclear	2.44\|576829\|37\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576829-576865	37	2668843-2668879	2

1. spacer 2.10|574625|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020833 position: 2662768-2662803, mismatch: 0

taccatggaagaaatggcaatatcaccgcgttcttc	CRISPR spacer
taccatggaagaaatggcaatatcaccgcgttcttc	Protospacer
************************************

2. spacer 2.42|576701|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020833 position: 2663870-2663837, mismatch: 0

gtgcttttcgaacatctttttctatatctacatg	CRISPR spacer
gtgcttttcgaacatctttttctatatctacatg	Protospacer
**********************************

3. spacer 2.44|576829|37|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020833 position: 2668843-2668879, mismatch: 2

atattactatttgaaaaagtgcgatctgtcacaatta	CRISPR spacer
atattactattggaaaaagcgcgatctgtcacaatta	Protospacer
*********** *******.*****************

NZ_CP020833.1|WP_069015680.1|2696716_2696992_-|hypothetical-protein

2696716_2696992_-

91 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4827586206896552	1.0

2630899-2700539

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP020833_2	Unclear	2.10\|574625\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574625-574660	36	2662768-2662803	0
NZ_CP020833_2	Unclear	2.42\|576701\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576701-576734	34	2663870-2663837	0
NZ_CP020833_2	Unclear	2.44\|576829\|37\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576829-576865	37	2668843-2668879	2

1. spacer 2.10|574625|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020833 position: 2662768-2662803, mismatch: 0

taccatggaagaaatggcaatatcaccgcgttcttc	CRISPR spacer
taccatggaagaaatggcaatatcaccgcgttcttc	Protospacer
************************************

2. spacer 2.42|576701|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020833 position: 2663870-2663837, mismatch: 0

gtgcttttcgaacatctttttctatatctacatg	CRISPR spacer
gtgcttttcgaacatctttttctatatctacatg	Protospacer
**********************************

3. spacer 2.44|576829|37|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020833 position: 2668843-2668879, mismatch: 2

atattactatttgaaaaagtgcgatctgtcacaatta	CRISPR spacer
atattactattggaaaaagcgcgatctgtcacaatta	Protospacer
*********** *******.*****************

NZ_CP020833.1|WP_069015679.1|2696988_2697225_-|hypothetical-protein

2696988_2697225_-

78 aa aa

HTH_XRE

Identity	Hit_domain_coverage
0.4827586206896552	1.0

2630899-2700539

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP020833_2	Unclear	2.10\|574625\|36\|NZ_CP020833\|PILER-CR,CRISPRCasFinder,CRT	574625-574660	36	2662768-2662803	0
NZ_CP020833_2	Unclear	2.42\|576701\|34\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576701-576734	34	2663870-2663837	0
NZ_CP020833_2	Unclear	2.44\|576829\|37\|NZ_CP020833\|CRISPRCasFinder,CRT,PILER-CR	576829-576865	37	2668843-2668879	2

1. spacer 2.10|574625|36|NZ_CP020833|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020833 position: 2662768-2662803, mismatch: 0

taccatggaagaaatggcaatatcaccgcgttcttc	CRISPR spacer
taccatggaagaaatggcaatatcaccgcgttcttc	Protospacer
************************************

2. spacer 2.42|576701|34|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020833 position: 2663870-2663837, mismatch: 0

gtgcttttcgaacatctttttctatatctacatg	CRISPR spacer
gtgcttttcgaacatctttttctatatctacatg	Protospacer
**********************************

3. spacer 2.44|576829|37|NZ_CP020833|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020833 position: 2668843-2668879, mismatch: 2

atattactatttgaaaaagtgcgatctgtcacaatta	CRISPR spacer
atattactattggaaaaagcgcgatctgtcacaatta	Protospacer
*********** *******.*****************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP020834

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP020833

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information