CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP018779	Ochrobactrum pituitosum strain AA2 chromosome 1, complete sequence	0 crisprs	csa3,RT,DEDDh	0	1
NZ_CP018781	Ochrobactrum pituitosum strain AA2 plasmid pOAAA2, complete sequence	0 crisprs	c2c9_V-U4,csa3,c2c10_CAS-V-U3	0	2
NZ_CP018780	Ochrobactrum pituitosum strain AA2 chromosome 3, complete sequence	6 crisprs	WYL,csa3,DEDDh	1	3
NZ_CP018782	Ochrobactrum pituitosum strain AA2 chromosome 2, complete sequence	0 crisprs	DEDDh,cas3,csa3	0	3

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

60397 : 68649

Ochrobactrum_phage(28.57%)

integrase

attL 58218:58231|attR 73000:73013

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
58218:58231	attL	NA	NA	NA	NA
WP_079212927.1\|60397_61543_+\|integrase	site-specific integrase	Q5QF66	Pseudomonas_virus	4.9e-25	28.1
WP_079212928.1\|61866_62154_-	hypothetical protein	A0A0B5A0D7	Paracoccus_phage	1.8e-05	45.2
WP_079213884.1\|62150_62363_-	hypothetical protein	NA	NA	NA	NA
WP_079212929.1\|62428_63064_-	hypothetical protein	A0A219VHA5	Ochrobactrum_phage	2.5e-23	37.1
WP_079212930.1\|63063_64476_-	hypothetical protein	A0A240F4S2	Ochrobactrum_phage	3.3e-07	29.1
WP_152027385.1\|64477_64663_-	hypothetical protein	NA	NA	NA	NA
WP_079212932.1\|64659_65619_-	hypothetical protein	B2ZY49	Ralstonia_phage	2.5e-22	37.4
WP_079212933.1\|65628_66357_-	hypothetical protein	A0A1Y0T169	Sinorhizobium_phage	2.2e-15	44.4
WP_079212934.1\|66452_66914_+	hypothetical protein	NA	NA	NA	NA
WP_167377111.1\|67116_67305_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_079212936.1\|67279_67747_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_079212937.1\|68175_68649_+	hypothetical protein	A0A2D1GNK3	Pseudomonas_phage	1.7e-16	36.9
73000:73013	attR	NA	NA	NA	NA

DBSCAN-SWA_2

951629 : 959563

Paenibacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_094507802.1\|951629_952393_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.1e-25	43.3
WP_079213926.1\|952649_952793_-\|transposase	transposase	NA	NA	NA	NA
WP_079213457.1\|953060_953885_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_079213458.1\|953995_954820_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_079213459.1\|955312_955555_-\|transposase	transposase	NA	NA	NA	NA
WP_161492470.1\|955589_957218_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_152027410.1\|957528_958320_+	hypothetical protein	NA	NA	NA	NA
WP_152027246.1\|958332_959563_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.4e-101	64.9

DBSCAN-SWA_3

969803 : 978362

Staphylococcus_phage(12.5%)

transposase,integrase

attL 974496:974509|attR 980934:980947

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079213467.1\|969803_970571_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.3e-07	22.9
WP_079213468.1\|970572_971427_-	ABC transporter permease	NA	NA	NA	NA
WP_152027411.1\|971708_972796_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	6.6e-48	39.6
WP_079213469.1\|973006_973513_-	hypothetical protein	A0A240F4T5	Ochrobactrum_phage	2.4e-29	51.2
WP_079213470.1\|973509_974298_-	hypothetical protein	A0A223FUQ9	Acinetobacter_phage	1.4e-42	53.8
WP_079213471.1\|974374_975415_-	late control D family protein	A0A0A8ILC1	Aurantimonas_phage	2.5e-84	51.6
974496:974509	attL	NA	NA	NA	NA
WP_079213472.1\|975430_976051_+	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	3.1e-34	44.1
WP_079213473.1\|976062_976509_+	ASCH domain-containing protein	A0A291AUQ6	Sinorhizobium_phage	2.4e-28	47.1
WP_079213474.1\|976505_977156_+	hypothetical protein	NA	NA	NA	NA
WP_079213475.1\|977152_977347_+	hypothetical protein	NA	NA	NA	NA
WP_079213476.1\|977330_978362_+\|integrase	tyrosine-type recombinase/integrase	F8TUV0	EBPR_podovirus	1.0e-114	59.4
980934:980947	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018779

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

383418 : 396030

Mycobacterium_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152027229.1\|383418_384945_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.4e-21	27.0
WP_079210750.1\|384934_385726_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.4e-33	34.2
WP_079210751.1\|386151_387591_-	hypothetical protein	A0A222ZMP7	Mycobacterium_phage	5.5e-18	28.9
WP_079211272.1\|388008_389226_+	RNA ligase RtcB family protein	A0A1I9SAD2	Rhodococcus_phage	5.5e-19	28.2
WP_152027230.1\|389212_389824_+	peptide chain release factor H	A0A1C9EHI2	Mycobacterium_phage	1.3e-05	50.0
WP_079210752.1\|390087_390981_-	nucleotidyltransferase	A0A292GK16	Xanthomonas_phage	1.5e-53	39.3
WP_079210753.1\|391062_392340_-	hypothetical protein	A0A0F6YPT7	Sinorhizobium_phage	3.7e-82	43.5
WP_079210754.1\|392502_393936_-	RtcB family protein	L7TNL0	Rhizobium_phage	2.2e-128	49.5
WP_079211274.1\|394470_396030_-	TROVE domain-containing protein	R4TL80	Halovirus	5.8e-29	26.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP018781

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3885 : 147306

108

Salmonella_phage(12.9%)

coat,transposase,tail,integrase

attL 105870:105887|attR 134921:134938

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079212632.1\|3885_5424_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-46	36.3
WP_161492431.1\|6120_6282_-	hypothetical protein	NA	NA	NA	NA
WP_079212633.1\|6378_6951_+	cysteine hydrolase	NA	NA	NA	NA
WP_079212634.1\|6950_7961_+	FUSC family protein	NA	NA	NA	NA
WP_079212635.1\|8518_8878_-	recombinase family protein	E5FFF9	Burkholderia_phage	4.4e-09	37.4
WP_152027344.1\|11313_12612_+	hypothetical protein	NA	NA	NA	NA
WP_079212639.1\|14432_15641_-	hypothetical protein	NA	NA	NA	NA
WP_161492432.1\|16213_20941_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_152027345.1\|21226_22440_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.3e-65	49.3
WP_079212641.1\|23052_23574_+	invasion protein	NA	NA	NA	NA
WP_079212869.1\|26347_26521_-	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_079212643.1\|27016_27853_+	hypothetical protein	NA	NA	NA	NA
WP_079212644.1\|28081_28204_-	hypothetical protein	NA	NA	NA	NA
WP_079212645.1\|28827_29052_-	hypothetical protein	NA	NA	NA	NA
WP_079212648.1\|30091_30403_+	hypothetical protein	NA	NA	NA	NA
WP_079212650.1\|31061_32069_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_079212870.1\|32280_32883_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1B0VCD8	Salmonella_phage	6.3e-32	42.0
WP_079212651.1\|35703_36069_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_152027346.1\|37109_38144_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	3.2e-07	24.5
WP_079212655.1\|38651_39911_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.5e-14	36.7
WP_079212657.1\|42473_43475_-	hypothetical protein	NA	NA	NA	NA
WP_079212658.1\|44643_45021_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_161492433.1\|45469_45916_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_079212660.1\|45971_46298_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_079212662.1\|48631_49834_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1B0VCD8	Salmonella_phage	7.8e-66	38.1
WP_079212664.1\|52161_52464_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	1.8e-19	52.2
WP_079212871.1\|52463_52757_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	3.7e-14	47.8
WP_079212665.1\|54089_54452_-	hypothetical protein	NA	NA	NA	NA
WP_079212872.1\|55139_56672_+	malonyl-CoA synthase	Q75ZG1	Hepacivirus	4.1e-35	27.8
WP_079212666.1\|56799_57093_-	hypothetical protein	A0A1W6DXB7	Sphingobium_phage	4.0e-08	43.0
WP_079212668.1\|57568_57886_+	hypothetical protein	NA	NA	NA	NA
WP_079212669.1\|58272_59115_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_079212672.1\|60406_61996_-	hypothetical protein	NA	NA	NA	NA
WP_152027347.1\|62524_64069_-	hypothetical protein	NA	NA	NA	NA
WP_161492434.1\|64645_70099_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_161492435.1\|70253_70430_-	hypothetical protein	NA	NA	NA	NA
WP_079212677.1\|70706_72875_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	1.8e-105	33.9
WP_079212873.1\|72943_73180_+	hypothetical protein	NA	NA	NA	NA
WP_079212678.1\|73232_73814_-	hypothetical protein	NA	NA	NA	NA
WP_152027349.1\|73902_74091_+	hypothetical protein	NA	NA	NA	NA
WP_152027350.1\|74180_74474_-	hypothetical protein	J7F9F7	Agrobacterium_phage	4.1e-05	37.9
WP_079212679.1\|74502_74760_-	hypothetical protein	NA	NA	NA	NA
WP_079212680.1\|74920_75541_+	hypothetical protein	NA	NA	NA	NA
WP_152027382.1\|75623_76711_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	3.9e-48	38.8
WP_161492436.1\|77218_77536_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_079212683.1\|78032_78269_-	hypothetical protein	NA	NA	NA	NA
WP_152027351.1\|78598_79477_-	hypothetical protein	NA	NA	NA	NA
WP_152027352.1\|79493_79742_-	hypothetical protein	NA	NA	NA	NA
WP_079212686.1\|79829_80642_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_079212687.1\|80593_80944_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_079212688.1\|80947_81526_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_025596116.1\|83819_85358_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-46	36.3
WP_161492437.1\|85399_85621_-	hypothetical protein	NA	NA	NA	NA
WP_161492438.1\|85657_85816_+	hypothetical protein	NA	NA	NA	NA
WP_079212690.1\|86060_86735_-	hypothetical protein	NA	NA	NA	NA
WP_161492439.1\|86718_87069_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_152027355.1\|88300_89064_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	5.7e-22	40.8
WP_161492440.1\|89614_89848_-	hypothetical protein	NA	NA	NA	NA
WP_079212694.1\|89937_90270_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_079212695.1\|90625_91579_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_079212696.1\|91575_94008_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_167377104.1\|93979_94612_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_079212698.1\|94712_95210_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_079212875.1\|95653_97447_-	chloride channel protein	NA	NA	NA	NA
WP_079212699.1\|97632_98079_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_152027357.1\|98957_99299_-	hypothetical protein	NA	NA	NA	NA
WP_161492441.1\|100035_101253_-	acyltransferase family protein	Q716G0	Shigella_phage	1.3e-23	32.7
WP_161492442.1\|101249_101843_-	hypothetical protein	NA	NA	NA	NA
WP_079212706.1\|103122_103353_-	hypothetical protein	NA	NA	NA	NA
WP_079212707.1\|103727_104417_+	porin family protein	O11861	Bartonella_henselae_phage	2.3e-30	33.5
105870:105887	attL	NA	NA	NA	NA
WP_079212708.1\|106457_106670_+	hypothetical protein	NA	NA	NA	NA
WP_167377102.1\|106856_107129_+	hypothetical protein	NA	NA	NA	NA
WP_079212709.1\|107480_107690_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	4.9e-08	48.3
WP_079212710.1\|108298_109291_-	trypsin-like peptidase domain-containing protein	S5FV10	Shigella_phage	1.1e-09	32.8
WP_079212712.1\|112654_113317_-	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_161492443.1\|114241_114418_-	hypothetical protein	NA	NA	NA	NA
WP_079212713.1\|114818_115097_+	hypothetical protein	NA	NA	NA	NA
WP_079212715.1\|115580_115841_+	hypothetical protein	NA	NA	NA	NA
WP_152027359.1\|116524_117046_-	invasion associated locus B family protein	NA	NA	NA	NA
WP_079212717.1\|119311_119578_-	hypothetical protein	NA	NA	NA	NA
WP_152027360.1\|120625_120934_+	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_079212720.1\|122674_123088_+	hypothetical protein	NA	NA	NA	NA
WP_161492444.1\|123177_123639_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_152027361.1\|123605_124818_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	2.3e-65	49.3
WP_152027362.1\|124873_126205_-	hypothetical protein	S4TP03	Salmonella_phage	5.2e-119	49.3
WP_152027363.1\|127022_127523_-	hypothetical protein	W8JF91	Salmonella_phage	1.2e-33	51.4
WP_079212723.1\|128584_128869_-	hypothetical protein	NA	NA	NA	NA
WP_079212724.1\|128861_129077_-	hypothetical protein	NA	NA	NA	NA
WP_152027364.1\|129182_130253_-	hypothetical protein	NA	NA	NA	NA
WP_079212876.1\|130363_130618_-	hypothetical protein	NA	NA	NA	NA
WP_152027365.1\|130773_131490_-	hypothetical protein	NA	NA	NA	NA
WP_079212727.1\|132353_132689_-	hypothetical protein	NA	NA	NA	NA
WP_152027366.1\|132688_132871_-	hypothetical protein	NA	NA	NA	NA
WP_079212728.1\|132870_133827_-\|tail	tail fiber protein	B2ZY49	Ralstonia_phage	6.1e-21	37.9
WP_079212729.1\|133823_134621_-	hypothetical protein	A0A088F6W1	Sulfitobacter_phage	1.5e-41	52.4
WP_161492445.1\|134755_135097_-	hypothetical protein	NA	NA	NA	NA
134921:134938	attR	NA	NA	NA	NA
WP_152027367.1\|135099_135660_-	Appr-1-p processing protein	A0A0F6SIM5	Sinorhizobium_phage	5.3e-41	48.4
WP_079212732.1\|135750_135939_+	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	1.1e-14	60.0
WP_079212733.1\|135942_136338_+	type II toxin-antitoxin system HicB family antitoxin	A0A0U4ISP5	Pseudomonas_phage	1.1e-21	47.3
WP_079212877.1\|136455_137436_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	3.9e-55	42.0
WP_079212735.1\|137675_137924_-	hypothetical protein	NA	NA	NA	NA
WP_079212736.1\|138128_138602_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_161492446.1\|138677_142661_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_079212738.1\|143251_144253_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	8.2e-45	37.1
WP_079212739.1\|144263_144419_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_152027368.1\|144940_145327_+\|transposase	transposase	NA	NA	NA	NA
WP_079212741.1\|145323_145677_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_079212742.1\|145767_147306_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.2e-95	38.9

DBSCAN-SWA_2

222705 : 286213

Planktothrix_phage(40.0%)

transposase,integrase

attL 214191:214206|attR 248664:248679

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
214191:214206	attL	NA	NA	NA	NA
WP_079212882.1\|222705_222948_-\|transposase	transposase	NA	NA	NA	NA
WP_152027374.1\|223612_223789_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_079212804.1\|223908_224229_+\|transposase	transposase	NA	NA	NA	NA
WP_079212805.1\|224987_225794_+	DUF1835 domain-containing protein	NA	NA	NA	NA
WP_079212806.1\|226420_226870_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_079212807.1\|227018_227507_-	DUF992 domain-containing protein	NA	NA	NA	NA
WP_152027383.1\|230867_231887_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_079212811.1\|232440_232899_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_167377103.1\|232874_233126_+	hypothetical protein	NA	NA	NA	NA
WP_079212813.1\|233818_235447_+	hypothetical protein	NA	NA	NA	NA
WP_079212814.1\|235433_236084_+	lasso peptide biosynthesis B2 protein	NA	NA	NA	NA
WP_079212815.1\|236531_236717_+	hypothetical protein	NA	NA	NA	NA
WP_079212816.1\|236750_237431_+	DUF4135 domain-containing protein	NA	NA	NA	NA
WP_161492458.1\|237667_238531_+	hypothetical protein	NA	NA	NA	NA
WP_161492459.1\|240665_243266_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_079212821.1\|244249_244810_+	hypothetical protein	NA	NA	NA	NA
WP_079212883.1\|246523_247246_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.0e-33	38.2
WP_079212823.1\|247232_247901_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_079212824.1\|248028_248844_-	basic amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
248664:248679	attR	NA	NA	NA	NA
WP_079212825.1\|249642_251508_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_079212827.1\|252950_253970_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_079212827.1\|254263_255283_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_161492460.1\|257623_259960_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_152027376.1\|260717_261422_-	hypothetical protein	NA	NA	NA	NA
WP_079212830.1\|261699_262527_+	hypothetical protein	NA	NA	NA	NA
WP_152027377.1\|263194_263530_-	hypothetical protein	NA	NA	NA	NA
WP_079212832.1\|264304_265075_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_079212833.1\|265078_265783_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_079212834.1\|265876_266614_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-24	34.5
WP_079212835.1\|266603_267272_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_079212836.1\|268368_269148_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_152027384.1\|270826_271057_+	hypothetical protein	NA	NA	NA	NA
WP_079212837.1\|272106_272421_+	HigA family addiction module antidote protein	A0A0N7BS23	Escherichia_phage	4.6e-10	33.3
WP_079212838.1\|273772_274024_+	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_079212839.1\|274020_274449_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_152027378.1\|275110_275368_-	hypothetical protein	NA	NA	NA	NA
WP_079212679.1\|275570_275828_+	hypothetical protein	NA	NA	NA	NA
WP_152027350.1\|275856_276150_+	hypothetical protein	J7F9F7	Agrobacterium_phage	4.1e-05	37.9
WP_079212884.1\|276508_277471_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA
WP_079212841.1\|277902_278223_-	DUF1173 family protein	NA	NA	NA	NA
WP_079212842.1\|278631_283548_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_079212641.1\|284162_284684_+	invasion protein	NA	NA	NA	NA
WP_079212843.1\|285211_286213_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.5e-43	36.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP018780

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018780_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018780_1

252875-252959

Orphan

Consensus_repeat	Method
CGCATCCCAAAAAGTGCGAAGCGGTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018780_1

>merge|NZ_CP018780|1|252875-252959|CRISPRCasFinder
CGCATCCCAAAAAGTGCGAAGCGGTTTTTTGGGTAAGATGCGCGCAGGAAAAGTGCCGCATCCCAAAAAGTGCGAAGCGGTTTTT

>NZ_CP018780|1|1|252875-252959|CRISPRCasFinder
CGCATCCCAAAAAGTGCGAAGCGGTTTTT	TGGGTAAGATGCGCGCAGGAAAAGTGC
CGCATCCCAAAAAGTGCGAAGCGGTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018780.1\|WP_146112669.1\|246389_247073_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_064320092.1\|251183_252701_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
NZ_CP018780.1\|WP_007873366.1\|252996_254031_+\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NZ_CP018780.1\|WP_079211439.1\|258677_259367_-\|thiaminase-II	unknown	unknown	gnl\|CDD\|381702
NZ_CP018780.1\|WP_007873360.1\|247530_248322_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP018780.1\|WP_167377098.1\|259363_260299_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270369
NZ_CP018780.1\|WP_007873357.1\|245780_246179_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211440.1\|260432_261041_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_CP018780.1\|WP_079211432.1\|244706_245468_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP018780.1\|WP_007873367.1\|254097_254445_+\|DUF779-domain-containing-protein	unknown	unknown	gnl\|CDD\|226094
NZ_CP018780.1\|WP_079211441.1\|261040_261811_-\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NZ_CP018780.1\|WP_079211438.1\|257910_258681_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP018780.1\|WP_079211437.1\|255717_257661_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP018780.1\|WP_064320089.1\|243696_244461_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP018780.1\|WP_079211436.1\|254595_255618_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
NZ_CP018780.1\|WP_007873380.1\|261812_262010_-\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|340451
NZ_CP018780.1\|WP_079211431.1\|242608_243448_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|224139
NZ_CP018780.1\|WP_079211434.1\|248402_249914_+\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237027
NZ_CP018780.1\|WP_079211435.1\|249991_250960_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822
NZ_CP018780.1\|WP_079211430.1\|240670_242605_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|180120

Protein	Function_ID	Function_description	E-value
NZ_CP018780.1\|WP_079211436.1\|254595_255618_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.86029e-108
NZ_CP018780.1\|WP_064320092.1\|251183_252701_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP018780.1\|WP_007873366.1\|252996_254031_+\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP018780.1\|WP_007873360.1\|247530_248322_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.72494e-96
NZ_CP018780.1\|WP_167377098.1\|259363_260299_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270369	cd13651, PBP2_ThiY, Substrate binding domain of ABC-type transporters for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily. ThiY is the periplasmic N-formyl-4-amino-5-(aminomethyl)-2-methylpyrimidine (FAMP) binding component of the ABC transport system (ThiXYZ). FAMP is imported into cell by the transporter, where it is then incorporated into the thiamin biosynthetic pathway. The closest structural homologs of ThiY are periplasmic binding proteins involved in alkanesulfonate/nitrate and bicarbonate transport , as well as THI5 which is responsible for the synthesis of 4-amino-5-(hydroxymethyl)-2-methylpyrimidine phosphate (HMP-P) in the thiamin biosynthetic pathway of eukaryotes. After binding the ligand, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ThiY/THI5 proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.18954e-112
NZ_CP018780.1\|WP_079211440.1\|260432_261041_-\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	3.49115e-85
NZ_CP018780.1\|WP_079211432.1\|244706_245468_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.87414e-42
NZ_CP018780.1\|WP_007873367.1\|254097_254445_+\|DUF779-domain-containing-protein	gnl\|CDD\|226094	COG3564, COG3564, Uncharacterized protein conserved in bacteria [Function unknown].	9.52913e-74
NZ_CP018780.1\|WP_079211441.1\|261040_261811_-\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	7.44517e-156
NZ_CP018780.1\|WP_079211438.1\|257910_258681_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.21022e-66
NZ_CP018780.1\|WP_079211437.1\|255717_257661_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.13885e-158
NZ_CP018780.1\|WP_064320089.1\|243696_244461_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	6.50372e-38
NZ_CP018780.1\|WP_079211439.1\|258677_259367_-\|thiaminase-II	gnl\|CDD\|381702	cd19367, TenA_C_ScTHI20-like, TenA_C family similar to the C-terminal TenA_C domain of Saccharomyces cerevisiae THI20 protein. This TenA family belongs to the TenA_C class as it has a conserved active site Cys residue; the double Glu residues identified in the active site of TenA_E from the archaeon Pyrococcus furiosus is conserved in this family. TenA_C proteins (EC 3.5.99.2) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway. Saccharomyces cerevisiae THI20 includes a C-terminal tetrameric TenA-like domain fused to an N-terminal HMP kinase/HMP-P kinase (ThiD-like) domain, and participates in thiamin biosynthesis, degradation and salvage; the TenA-like domain catalyzes the production of HMP from thiamin degradation products (salvage). A majority of this family are single-domain TenA_C- like proteins; some however have additional domains such as a ThiD domain. It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect.	4.64614e-104
NZ_CP018780.1\|WP_007873380.1\|261812_262010_-\|sulfur-carrier-protein-ThiS	gnl\|CDD\|340451	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS. ThiS, also termed Thiamine biosynthesis protein (ThiaminS), is a sulfur carrier protein involved in thiamin biosynthesis in prokaryotes. It has the beta-grasp ubiquitin-like (Ubl) fold with low sequence similarity to ubiquitin (Ub), and is activated in an ATP-dependent manner by sulfurtransferases, similar to the activation mechanism of Ub-activating enzyme E1. ThiS has common evolutionary origin with Ub-related protein modifiers in eukaryotes, a beta-grasp fold as Ub, and is closely related to proteins MoaD and Urm1.	3.60862e-14
NZ_CP018780.1\|WP_079211431.1\|242608_243448_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|224139	COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism].	1.87308e-106
NZ_CP018780.1\|WP_079211434.1\|248402_249914_+\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237027	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP018780.1\|WP_079211435.1\|249991_250960_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	2.32266e-112
NZ_CP018780.1\|WP_079211430.1\|240670_242605_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|180120	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional.	0

>NZ_CP018780.1|WP_064320092.1|251183_252701_+|aldehyde-dehydrogenase-family-protein
MNKVEFHRSVKPEFAKRYGNFIGGKWVEPKSGRYFDNTSPVNGQVLCEVARSDAADVDAALDAAHAAKEAWGKTSPAERAVILNKIADRIEENLPKLAAAETWDNGKPIRETTHADLPLAIDHFRYFAGAIRAQEGGISEIDHDTVAYHFHEPLGVVGQIIPWNFPLLMAVWKLAPALAAGNCVVLKPAEQTPASILVLMEVIGDLLPAGVINVVNGFGLEAGKPLASSPRIAKIAFTGETTTGRLIMQYASQNLIPVTLELGGKSPNIFFSDVTAEDDDFFDKAIEGFVMFALNQGEVCTCPSRALVHEKIYDKFMERALKRVEAIVQGDPLDPATMIGAQASSEQLEKILSYIDIGKQEGAEVLTGGGRNELAGDLAGGYYVKPTVFKGTNKMRIFQEEIFGPVVSVTTFKDDAEALSIANDTLYGLGAGVWTRDGTRAYRFGRAIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRENHLKMLDHYQQTKNMLVSYSPKKLGFF
>NZ_CP018780.1|WP_079211435.1|249991_250960_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MGAPQDRIHADRIHSEIETGGAARSALVASWRRSARLYGLDPAETGSVQTLSDHELRTARQRMERVISIAQASMDRLYMAVGGVGCCVLLADSQGVPVERRGAAGDDDTFYDWGLWTGAVWSEAVEGTNGIGTCIAEQRALTIHRDQHFHTRNIGLSCTVAPIHDHQGRLMAALDVSSCRSDLTEAFVQLISVAVIDAARRIEAENFRQAFPDARIVLAPSADRTGGALIAVDKDDLVIGATRAARLSLDLTDEALLTALPAADLLGWNADPREDMAESERGVILRAIARVDGNVSSAAKLLGISRATLHRKLNRLKIIRPN
>NZ_CP018780.1|WP_079211434.1|248402_249914_+|glycerol-3-phosphate-dehydrogenase
MAQHKIFDIFVIGGGINGCGIARDAVGRGFSVGLAEMNDLASGTSSRATKLIHGGLRYLEHYEFRLVREALMEREVLWANAPHLIHPMRFVLPFHKGGVRPAWLLRLGLFLYDHLGGRKKLPATRTLDMRTDPSSAPLKPLFTKAFEYSDCWVDDARFTALTARDAADRGAMIRTRTKVVSARRDHEAWTVTLENIDTGLREEFRSRLLVNAAGPWADKVLEGVEGDRQLHNVRLVQGSHIVVRKKFSDPRSYFFQNNDGRIIFAIPYEDDFTLIGTTDQDYKGDPAKVAISDKETDYLCAAASEYFREPVRIEDIVWTYSGVRPLYDDGASKAQEATRDYVLKEDAPQGAAPLINVFGGKLTTARRLAEHMLEKIEHHLGKKGAPWTHAASLPGGDFEATAFDQELEKLKADYPFLPHLHARRLFKLYGTRARILLGKSKSLEELGRHLGADLYEAEVRYLMEHEWAHTAEDILWRRTKLGLRMNAIEVSSLETFVQPAKVA
>NZ_CP018780.1|WP_007873360.1|247530_248322_+|DeoR/GlpR-transcriptional-regulator
MQLTPRHNAILDIARRQGQVLVDDLASAFDVTPQTVRKDLNDLCKARLLRRIHGGALYPSGVENMEYEARRRIAAHEKELIGRAAAEMIPDGASLFINIGTTTEAVSHALIDHNNLMVITNNINVANTLRVYPEIEVVIAGGVVRASDGGIVGEAAVDFIRQFKVDYAIIGASAMDEDGALLDFDFREVKVAQAIIANARHVILVTDSTKLERTAPVRLGHISQVHTFITDRCPSQQLRELCRENEVELIETAEDEPNEKKES
>NZ_CP018780.1|WP_146112669.1|246389_247073_-|hypothetical-protein
MSKLGILCLSGAFILFGGGAFAQTVNVDNNTNSSSQAGATAIAVGGGSDSPSKIKTTVPAFAPGLVAAGVHSCAGSTSAGVGATGWGLGFGTTYEMRECNRRAYAAALLGMGQNAAALDLICLNKEVRASLNATGVYCPSQGAAARSASVQRQTRQAPLLASVSNEEPAAIPASSTGTTASPPIASRKRTYSAKALGLSSDQLRAKGCVLRTTEGNSRAWHCPGPIM
>NZ_CP018780.1|WP_007873357.1|245780_246179_-|hypothetical-protein
MKKIIIASIALLAAGALPAAAQTVNWNGSFGGASGAGSAVTGGFAFGAGSTAAGQAATTGWAEGKGTVVGLGGKMGHYGASAGIGSGYFTSGSGGQTAAMAQSGTGFFGGSSAGTAFGTTSGGSSGSISLRP
>NZ_CP018780.1|WP_079211432.1|244706_245468_+|response-regulator-transcription-factor
MLEMRERYSWASPSGVSDGSAIVANERMQGGEYAAGLPLQDEPHLMLVCKSNLERECIFNGLMMNGLKLPVVSFASVDRNMPLNGAIVVLMHIGSKRLADPFFSDEVEAAIKAWAPIPLVLLAEREEWSQVLRAMEIGARGYIPTSVDIKICVEAIHLALAGGMYVPASMLMKPPSEDMSDDVLGELLTMREIEVVHAIRVGKSNKIIAFELGMSEGTVKAHVHNIMRKIGAANRTEVACKLHKMYGNKFSGE
>NZ_CP018780.1|WP_064320089.1|243696_244461_-|Crp/Fnr-family-transcriptional-regulator
MHSGNQNTTALMIDGLVSLLESPPILAKLNAQEKQSLQSLVLSESSYPADAVIIEQGASIRSIHLVRSGWGCVYRDLSSGERQIIDFPMRCDFVGLRTGDGYSYNTIKSITPMSLYEIPLSSLEETIWQIPRLSMIFIELLSRQRSMLIEHLTNIGCRSAFVRTAHLLLELSDRVKSCGMGDADSFYCPLTQYQLADALGLTPIHLNRMMRELREEGLVMFRSYKVEILDRQRLVEIAEYDGQFMRMSVFDKSI
>NZ_CP018780.1|WP_079211431.1|242608_243448_+|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MTTAAFPKADPNGKALLSLLEDAALEAGRVIIKHYTDGCAVHSKKDQSPVTEADQAAEAIILSALASVAPSIPVVAEEEAAAGRLPAHLGRKFFLIDPLDGTREFLLRNGDFTVNIALIEDGVPVLGLVYAPVRNLLYVGSREGAQEAVTSADHQIISRRPIAARIAPSEKVVVCSRSHLTSETEEFLKLNHSGKCVSVGSSLKFCMIARGEADLYPRFGPTMEWDTAAGDAVLRAAGGMTTTFDGKPMIYGARSDGTVKGFSNPDFVAFGAGETPVFA
>NZ_CP018780.1|WP_079211430.1|240670_242605_+|sulfate-adenylyltransferase-subunit-CysN
MNAVLKPSVTSAAVSEFLADQERKTLLRFLTCGSVDDGKSTLIGRLLYDTKLIFEDQLATLKNDSRKFGTTDDDFDFALLVDGLEAEREQGITIDVAYRFFSTPRRKFIVADTPGHAQYTRNMATGASTADLAVVLIDARQGVLTQTRRHSFIASLLGIRHIVVAVNKIDLVDFSKDAFDRIVADYMSFAKDLGFASIQAIPLSARFGDNVSSPSSRIGWYEGPYLLEYLETVRLDTDSIGKPFRFPVQYVNRPNLDFRGFSGTVASGSITEGDTVVVAKSGKQSKVKRIATYDGDLARATEGQAVTLVLEDEIEVSRGNMLVGAEARPEVADRFSANIVWFGEDALQPGRSYLLRTETDQTPVTISEIKYRTDVNTFAREEATRLDLNEVGLCHLQTADQIVFDPYSDNRVTGAFVLIDRLTNATVGAGMIDQALRQATNVHLQAFDLDKQARAAQKFQKPAVLWFTGLSASGKSTIANRLEQRLHALGKHTYLLDGDNVRHGLNSDLGFSDEDRAENIRRVGEVAGLMADAGLITLVSFISPFRSERDRVRSRLPEGEFIEIFVDTPIEECMARDPKGLYAQALRGEIKAFTGIHSPYEAPLSPELHLNTAGRDIDELVAEVEKYLAERGVIGSYGSDSWSI
>NZ_CP018780.1|WP_007873366.1|252996_254031_+|alcohol-dehydrogenase-AdhP
MAKTMKAAVVREFGKPLTIDEVPIPVPGDGQIQVAIQASGVCHTDLHAAEGDWPVKPNPPFIPGHEGVGFVSAVGRGVKHVKEGDRVGIPWLYTACGHCVHCLGGWETLCEEQQNTGYSVNGGFADFVVADPNFVGHLPKNIEFNEIAPVLCAGVTVYKGLKVTDTKPGDWVVISGIGGLGHMAVQYAKAMGLNVAAVDIDDKKLDLARKLGATVTVNAKTHNDPAAYIKKETDGGAQGVLVTAVSPKAFEQAIGMAARGGTIALNGLPAGEFPLSIFNMVLNGVTVRGSIVGTRLDLQESLDFAADGKVKATIRTDKIDNINAIFDEMRAGQIEGRVVMDLTQ
>NZ_CP018780.1|WP_007873367.1|254097_254445_+|DUF779-domain-containing-protein
MPQVAQQEQVTATDAALELIAELQDEYGPIMFHQSGGCCDGSSPMCYPQGDLLLSDADVKLGEIGGAPFYISGSQYEAWKHTELIIDVVPGRGGMFSLDNGREKRFLTRSKICSI
>NZ_CP018780.1|WP_079211436.1|254595_255618_+|LacI-family-DNA-binding-transcriptional-regulator
MAASNKRATIHDVARLAGVSIKTVSRVYNDEPNVRDTIRERVKEAGAELRYRPNAAARNLVERRSHLIGLFFENPSHSYVTELQVGALDRLRGTRYRLLIFPVENRADIRGSLIETAHASGLDGIIVTPPMSDDPEILQELIASAMPFARVAGDFNVHPTDSVAIDDEAATLDLMKYLLDMGHRRIAIVIGDLTHRSAQQRLAGYRRMLDEAGIDHNPDYEFEGGFSFSSGLAAGRKLLSLQNRPTAIFASNDDMAAAVLQIAYDYKIDVPRELTVVGFDDSAIASMVSPQITTVRQPIREMTRDAVDMLLHQIDTNNTSPSRHIEYKLIIRQSSGKVAE
>NZ_CP018780.1|WP_079211437.1|255717_257661_-|ABC-transporter-ATP-binding-protein
MPQLSAAVCFVFVFKHRSTQNRFVLLMKMILKEPESVFARPGIIHMTRFRINFRGPAFRNVLGYTFSHWRSQPLRLTLIIISMLLATAADVLTPLYSGRLVDALSIGQDGAWDAAIHALIILLALGALALITRQLTFYVITDFTLKIMSDMAASSFRKLQRFSTDWHANAFAGSTVRKVSRGMWALDLLNDTLLIALLPSILMLFGSVALLAWYWPMMGLLVAIGSVLFIVCTIVISLGFVAPAATLANSWDTRMGGALADAISCNAVVKAFGAEGREDGRLAKVVTKWRSRTRRTWLIGTLNGFIQGVNLLVMRGVVIAFALYLWSQGKATAGDITFVLTAFFMLQGYLRDVGMHIRNLQRSVNDMEELVQIEAEPYGIADRQGANAIKIGNGEITFENVTFHYGSHDTALYRDFSVRIEAGERVGLVGHSGSGKTTFIKLIQRLYDVSGGAIKIDGQNIAEVTQASLRSQIAIVQQEPILFHRTLAENIAYARPGATQAEIEHAAMLASAHDFIMRLPKGYATLVGERGVKLSGGERQRVAIARAFLADAPILILDEATSSLDSESEVLIQQAMERLMIGRTTLVIAHRLSTVRALDRLLVFEKGKILEEGDHDALIRKPGGIYRRMFERQALELTKGLEDVLPS
>NZ_CP018780.1|WP_079211438.1|257910_258681_-|ABC-transporter-permease
MTSIAPRSRKKRIADGFLSAFAVLALWQAVVSIWQMPRFILPGPLDVVQSLITNAQLIADNAVVTFGEVLGGLFLGSAIGVLTAIGLMMSPLAQRLVMPVMVFSQAIPIFALAPILTLWLGYGPASKIAVTILMIFFPVVSTFLDGMQRTDQTLINAAENLGAKPMQILFRVRIPAAFPSLASGLSLAAVYAPIGAVVGEWVGASKGLGYLMLLANGRAKVDLMFASLFVLATFTMLLHATISHFSRKLAAWPRKL
>NZ_CP018780.1|WP_079211439.1|258677_259367_-|thiaminase-II
MSDTLYSSELFTRLRAATLDDWTPYIDHEFVRGLGDGTLPKSAFLHYLRQDYVYLHHYARAFALGVVKAGSLQETRLCAEIMHGLAVTELPLHVGICAREGITEDDLYNTKEEPENLAYTRYVLDCGQAGDFLDLLTALVPCAHGYGEIGVNLAATAHTGTPYQEWIDTYAGADYQEMCHTVGKLFDQAAKDRIGTDFENSPRWPKLCQIFATASRLEANFWSMGLKGA
>NZ_CP018780.1|WP_167377098.1|259363_260299_-|ABC-transporter-substrate-binding-protein
MSAQAAQAAQANDKFKLILDWYVNPDHGPIIVADKLGYFKDAGLDVEIIAPADASVPPKMVAAGQADLAISYQQQVHLDVHADIPLIRVGTLVDSPLNCLMVRDDGSVNSIADLKGKKIGFSVAGVEETVLGTILKNHDIKLSDVELINVNFSLAPSLMSKQVDAVMGAYRNVELNQMAVEGVVGKCFFVEEEGVPVYDELVYVANSNKLDANEKERISRFLAATEKAAQYIVNHPEQSYDLFASYSSELKDELNQRAWKDTVARFSRSPASLDYGRWSRYETYLKDNGLVPSNLPVERFAIDVNAGGDKS
>NZ_CP018780.1|WP_079211440.1|260432_261041_-|thiamine-phosphate-synthase
MTLDPFYPIFDSASWCERMVPLGIKLVQLRIKDKNDAELRAEIRAAREICARYDCQLIVNDYWKLAIEEGCDFIHLGQEDLDDADLDAIRESGVKLGVSSHDEAELDRALALKPAYIALGPVYPTILKKMKWHEQGLDRVSQWKATLGDIPLVGIGGMNVERAPGVFKAGADIVSVVTDITLNPDPEARVRQWIEVTRPYVK
>NZ_CP018780.1|WP_079211441.1|261040_261811_-|thiazole-synthase
MLEFYGKTFESRLLLGTAQYPSPSILADSVRSSQSEIVTVSLRRESGNMRAGQDFWTLIKDLGVSVLPNTAGCHTAREAVTTAKMARDVFGTNWIKLEVIGDHDTLQPDPFGLVEAARILCDEGFEVFPYMNDDLVVAEKLIEAGCKVLMPWGAPIGSGRGLNNPYALKTMRAHFPDIPLVVDAGIGVPSHAAAAMELGFDAVLINTAVAKAGDPAAIARAFALSVEAGRIAYEADPIEARDMAAPSTPLLGKAFL
>NZ_CP018780.1|WP_007873380.1|261812_262010_-|sulfur-carrier-protein-ThiS
MTIVLNGEVFETKSANLFALLAEIELDEAVVATALNGEFIAGDEREETLIGEGDRIEVLAPMQGG

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Crispr_ID: NZ_CP018780_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018780_2

368997-369076

Orphan

Consensus_repeat	Method
AGAAATAGAGTGCATCTCGAAAAGTG	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP018780_2

>merge|NZ_CP018780|2|368997-369076|CRISPRCasFinder
AGAAATAGAGTGCATCTCGAAAAGTGCAAAGCGGTTTTTGGATAAGATGCGCGGAGAAATAGAGTGCATCCCGAAAAGTG

>NZ_CP018780|2|2|368997-369076|CRISPRCasFinder
AGAAATAGAGTGCATCTCGAAAAGTG	CAAAGCGGTTTTTGGATAAGATGCGCGG
AGAAATAGAGTGCATCCCGAAAAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018780.1\|WP_007873519.1\|375253_375676_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|237569
NZ_CP018780.1\|WP_079211490.1\|369684_373182_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223664
NZ_CP018780.1\|WP_079211487.1\|365450_365933_+\|CAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225218
NZ_CP018780.1\|WP_079211493.1\|377087_377783_+\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP018780.1\|WP_007873518.1\|374062_375013_+\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
NZ_CP018780.1\|WP_007873503.1\|359638_360661_+\|Hsp33-family-molecular-chaperone	unknown	unknown	gnl\|CDD\|234952
NZ_CP018780.1\|WP_079211488.1\|366070_367420_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_CP018780.1\|WP_064320160.1\|364048_365014_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_CP018780.1\|WP_007873513.1\|368507_368861_-\|DUF952-domain-containing-protein	unknown	unknown	gnl\|CDD\|226033
NZ_CP018780.1\|WP_064320164.1\|369130_369580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211489.1\|367416_368511_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP018780.1\|WP_079211494.1\|377850_378222_+\|drug:proton-antiporter	unknown	unknown	gnl\|CDD\|319922
NZ_CP018780.1\|WP_064320172.1\|379698_380400_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023
NZ_CP018780.1\|WP_064320158.1\|360743_361136_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP018780.1\|WP_079211486.1\|362867_363959_+\|2'-deoxycytidine-5'-triphosphate-deaminase	unknown	unknown	gnl\|CDD\|181028
NZ_CP018780.1\|WP_079211492.1\|375834_377001_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|180404
NZ_CP018780.1\|WP_079211491.1\|373186_373837_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP018780.1\|WP_079211485.1\|361309_362503_-\|O-succinylhomoserine-sulfhydrylase	unknown	unknown	gnl\|CDD\|168979
NZ_CP018780.1\|WP_007873508.1\|365106_365373_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211495.1\|378273_379551_-\|5-aminolevulinate-synthase	unknown	unknown	gnl\|CDD\|236370

Protein	Function_ID	Function_description	E-value
NZ_CP018780.1\|WP_007873519.1\|375253_375676_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|237569	PRK13952, mscL, large conductance mechanosensitive channel protein MscL.	7.78686e-76
NZ_CP018780.1\|WP_079211490.1\|369684_373182_+\|sensor-histidine-kinase	gnl\|CDD\|223664	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only].	4.24946e-86
NZ_CP018780.1\|WP_079211487.1\|365450_365933_+\|CAP-domain-containing-protein	gnl\|CDD\|225218	COG2340, COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown].	3.16783e-40
NZ_CP018780.1\|WP_007873518.1\|374062_375013_+\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	6.06425e-147
NZ_CP018780.1\|WP_007873503.1\|359638_360661_+\|Hsp33-family-molecular-chaperone	gnl\|CDD\|234952	PRK01402, hslO, Hsp33-like chaperonin; Reviewed.	0
NZ_CP018780.1\|WP_079211488.1\|366070_367420_+\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.3039e-125
NZ_CP018780.1\|WP_064320160.1\|364048_365014_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.12401e-104
NZ_CP018780.1\|WP_007873513.1\|368507_368861_-\|DUF952-domain-containing-protein	gnl\|CDD\|226033	COG3502, COG3502, Uncharacterized protein conserved in bacteria [Function unknown].	1.8564e-57
NZ_CP018780.1\|WP_079211493.1\|377087_377783_+\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.70982e-65
NZ_CP018780.1\|WP_079211489.1\|367416_368511_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP018780.1\|WP_079211494.1\|377850_378222_+\|drug:proton-antiporter	gnl\|CDD\|319922	cd07261, EhpR_like, phenazine resistance protein, EhpR. Phenazine resistance protein (EhpR) in Enterobacter agglomerans confers resistance by binding D-alanyl-griseoluteic acid and acting as a chaperone involved in exporting the antibiotic rather than by altering it chemically. EhpR is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.	1.35838e-42
NZ_CP018780.1\|WP_064320172.1\|379698_380400_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	2.21986e-58
NZ_CP018780.1\|WP_064320158.1\|360743_361136_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.4854e-80
NZ_CP018780.1\|WP_079211486.1\|362867_363959_+\|2'-deoxycytidine-5'-triphosphate-deaminase	gnl\|CDD\|181028	PRK07559, PRK07559, 2'-deoxycytidine 5'-triphosphate deaminase; Provisional.	0
NZ_CP018780.1\|WP_079211495.1\|378273_379551_-\|5-aminolevulinate-synthase	gnl\|CDD\|236370	PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.	0
NZ_CP018780.1\|WP_079211492.1\|375834_377001_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|180404	PRK06108, PRK06108, pyridoxal phosphate-dependent aminotransferase.	0
NZ_CP018780.1\|WP_079211491.1\|373186_373837_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.07362e-61
NZ_CP018780.1\|WP_079211485.1\|361309_362503_-\|O-succinylhomoserine-sulfhydrylase	gnl\|CDD\|168979	PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed.	0

>NZ_CP018780.1|WP_007873513.1|368507_368861_-|DUF952-domain-containing-protein
MTKTTIYKIAPRDLWAQAEEAGNFTGAPVDIADGYIHFSTSEQVRETAAKHFAGQTDLLLVSVDTAALGDALKFETSRGGALFPHLYAMLPLSAVVKVEPLLLDKDGLHIFPELEDK
>NZ_CP018780.1|WP_079211489.1|367416_368511_-|quinone-dependent-dihydroorotate-dehydrogenase
MSGLFELFGRRALFTFDAEQAHGLSIAGLKTGIVTCSRPHDPALSVKIAGLQFPNPVGMAAGYDKNAEVPDALLKIGFGFTEVGTITPRPQSGNPRPRIFRLVDDRAVINRLGFNNEGHDAAFKRLSQRAGKSGIVGVNIGANKDAEDRIGDYVAGIRKFYQLARYFTVNISSPNTPGLRNLQSRDALRELLSRVLAARHEEGKMCTLKRPVFLKIAPDLADEELDDIAAEALEQKLDGIIVSNTTLSRDGLNSTENREETGGLSGAPLFERSTIILARMRERVGADMPLIGVGGIDSAETALAKIKAGADLIQLYTGMIYRGPGLASEIVRGLSDAVKIEGVASIADLRDRDTKEWAARRLPA
>NZ_CP018780.1|WP_079211488.1|366070_367420_+|MATE-family-efflux-transporter
MLHDQSIVSRPFEVTNRMVMMIAVPMTLAAVTTPLLGLVDMGVVGQMGQAELIGGLAIGALVFDFLLTMFSFLRSGTTGLVAQAMGAGDKAEEQAIFWRAIIIAIAAGLLMILSLPLVLTVASDFIHPTPATQEAMVTYVSIRMLSAPVALINYSVLGLLLGRGQGILGLSLQVLINGINIILCIVLGLELGWGVAGVAWATVTGETVAAIIGLTLVARHFNRTTGRRPDWARIFQKEGLVRMVALNRDIMIRSILLLTAFAFFTRAGSELGPVTLAANAVLMNFFLVCGFFLDGMAAAVEQIVGRSVGARYSPAFVRGAKLTFVWGLVMASLIAFTLLVFGDAIIDLLSKASDVRDEAIKYLPWAALTGLTGLLAFHMDGVYIGATWSRDMRNMMFFSLIFFLAVLYAVKPVMGNHGLWLAINLFLSIRGITLLALLPRRYRTEFFKT
>NZ_CP018780.1|WP_079211487.1|365450_365933_+|CAP-domain-containing-protein
MQNNDTFNLTRRGFLILAGGALAFAALPAGFADAAADVDPTELFNQIRKSNGLPLMATNGKLEQAALYQARRMASHGKIGHSVGWGNGFVSRLKQAGIRGPAAENVAAGQPNTQAVFDAWMKSPGHRKNMLDPTFEHYGLAWATPENNPRRLYWAMMLGL
>NZ_CP018780.1|WP_007873508.1|365106_365373_+|hypothetical-protein
MSDGVNRFLGDTPARVLIKLVLISLVVGVVMSAFHWTPYDILYGIRDFVLRLWNMGFSAIAGFADYLILGAAVVIPAFILLRILSYRK
>NZ_CP018780.1|WP_064320160.1|364048_365014_+|GlxA-family-transcriptional-regulator
MTDVPSRRLSVGIVALPGFTLTALSLFLDPFRLAADDRDKSRQIRCAWKICTLSGDPVTSSSGMVIEPTAPIGELDECDYVAVVGGLLAQYRPRQQALIDLIKRADKRGKTVVGLCTAAFLLAEGGLLDDRNCCVSWFHRDDFLDLFDGHTADTTSLFHRSGRHYTCAGGLGAASLSLSIIQNEISEELARKSASILMIPYELVRSEQPALSFNGVRSPMIRKAIRIFEETLEEPVPMIDVARKLGISVRQMERGFRMAVGRTAFEVREELRVKKARELLSETGLSLLEVAVASGFTDTRSMNRSFVRQKQKPPRDYRKER
>NZ_CP018780.1|WP_079211486.1|362867_363959_+|2'-deoxycytidine-5'-triphosphate-deaminase
MTQREAGILADADIAALFESGLLKSARPLDADQIQPASLDLRLGVKAYRVRASFMPGPGTPVIDKLERLKLHEIDLTAGAVLETGCVYIVPLLESLSLSPELSASANPKSSTGRLDIFTRVIADGAQEFDKVPAGYNGPLYLEVSPRTFPIVARTGSRLSQIRFRQGRAQLTEAELATLHQNETLVAAEQPNISGGGIALSVDLSGDKDKLIGYRGKHHTGVVDVDKRAANDVLDFWEPIYDRGARELVLDPDEFYILVSREAVHVPPLFAAEMTPFDPLVGEFRVHYAGFFDPGFGHTAAGGTGSRAVLEVRSHEVPFILEHGQIVGRLVYEHMLNRPKALYGIDLGSNYQAQQLKLSKHFR
>NZ_CP018780.1|WP_079211485.1|361309_362503_-|O-succinylhomoserine-sulfhydrylase
MTNKTTRKLRPATQLVHAGSLRSGFAELSEALYLTQGFLYPTAEAAEARFTGEDPGFIYSRYANPTTDMFEKRMCALEGAEDARAFTSGMAAVAASILCQVQAGEHVICARAVFGSSRYIIETLLPRYGVEFSIIDGSKIENWKAAVRPNTKVMLLESPSNPTLEVIDIAAVADIANEIGAKLIVDNVFATPLYQKPLELGAHIVVYSTTKHIDGQGRCLGGIILSDQEWTEEVLQPYFRHTGPGMSPFNAWIMLKGLETLGVRVRQQTQSAAAVADALAGRAGVKQVIYPGRADHPQADIIAKQMTGGSTLIALELEGGKEAAFKFENALQVFSISNNLGDAKSIITHPATTTHQSLTDEARAELGISDGMLRISVGLEDQDDLVEDVLEALAAAR
>NZ_CP018780.1|WP_064320158.1|360743_361136_-|Co2+/Mg2+-efflux-protein-ApaG
MYKAVTRGIEVTAEPFYLEDQSEPEDNRYVWGYRITIANNSSQTVQLRSRYWQITDGNGHIEEVQGAGVIGEQPTLNPGDSYQYSSGCPLSTTSGVMVGRYQMQASDGNAFEVDIPAFSLDIPEARRTLN
>NZ_CP018780.1|WP_007873503.1|359638_360661_+|Hsp33-family-molecular-chaperone
MADKTSIEHNEEEVVQIDLNNFDFAGDDAVVPFQVEGLDVRGRAVQLGASIDAILKRHNYPETVARLLAEATVLTVLLGTSLKFEGKFIFQTQSDGPVDMLVVDFRTPRSVRAYARFDAERVAEAVSAGKTRPEELLGRGTLAFTVDQGSHTQRYQGIVALDGSTLEEIARTYFRQSEQIATDMKLSVAKLVERGSDGKLVERWRAGGLMIQFLPESEIRSRMPDLPGGDGDENTVVLDLEDDGWDEARSLVGTIESSELTDPQVGSERLLYRLFHERGVRIYEAIRVIDDCACSREKIEGVFSNFSAEEIQDSVEDGKISVTCEFCSKTYEFDPAQFAK
>NZ_CP018780.1|WP_064320164.1|369130_369580_+|hypothetical-protein
MSGKNMPLFRTLATVSLLGTGFIASSAYAQENGRYRLEGTETGYVRLDTRTGALSVCNEHQGQLVCKMATEDREAYENDISDLQDRVKRLEDKLAAVQSGAASAMPSKLPSDAEFEQSLGYMERFMRRFMDVAKSFDSEPEKPANGAQQ
>NZ_CP018780.1|WP_079211490.1|369684_373182_+|sensor-histidine-kinase
MQGWGIISVAFLYLLMLFAVASIGDRRAARWSSAPRPYIYALSLAVYCTSWTFFGSVGLSAQRGLEFLGIYIGPILVFTLGNRLLRHIVRLAKAEHITSIADFLAARYGKSFGVASLATCIAAVGSIPYIALQLKAVSGSVGLVMEHYGSAFDPSSFVFGDISLPVAAVLAVFAILFGTRHTDATEHQNGLILAVALESVIKLSAFLAVGLACTFFVFGSPGELIEKISQSPAALDAFHYETSIGTWIVHTMLSAAAIIMLPRQFHVTVVESRSEKELRTASWLFPLYLILINIFVFPIALIGVMTLGNTVSGDLYVLALPLSAGAHWLALIAFLGGLSAATAMVIVACVALSIMISNHLVLPLIIRRLAVRHPTEQRDLTMIILNTRRLTIIGILALAFAYYRMASNNIHLASIGLISFAAIAQFVPSFIGGLFWRNANGRGAMLGLSAGFLIWAYTLLLPTVAPENAAILRDGFLGFTALRPEALFGTDMLPLTNGVVWSLAANTLFYLLGSLSRASTPLERIQASIFLPRYFIGTPTLKRFRTTVTVAELKATMARYLGAERVERAFLRFEGREQRRLDPGMTVDTPLIRYAEQLLGTAVGSSSARLVLSLLLKRNDASARDARQLLDDASVALQQNRDLLQIALDQMDQGITVLDKDLRLTCWNRQFRRLFDLPDEVMQVGIPVSEIVEHLARSGDLAANAQNAAIRSLATLRKPWRLTLKSTGKVLEINSNPMPDGGLVATYTDITDEVEADISRQRAAEVLEQRVADRTAELTHVNQKLAKAQSVAEEANLGKTRFLAAAGHDILQPLNAARLYSTALAEKLGRAETSQLARNIDSSLESVEAILGMVLDISRLDTGALKPEVSAFRLDRLLSQIATDFTPMARKKGLKLRVVPSSIAVKTDRNMLRRLIQNLVSNAIKYSRKGGILLGVRRRGNFVELQVLDTGIGIPKPKLKLVFREFTRLDEGMREAEGLGLGLSIVDRIARMLELPLTVSSDPGKGSVFTLCLPISDEAVPVEEIASRKGVKRASSLTGLDVLCIDNDANILAGMETLLNGWGCNVTTLRGGAGLKVFCVEREVAPDIIVADYHLDNENGLDMIGFTRETFGHEIPAILLTADRSKEVRKRADDENVTVLNKPLRPAALRALLSSALHQRQSAAE
>NZ_CP018780.1|WP_079211491.1|373186_373837_-|response-regulator-transcription-factor
MQFIIADDHPLFRGALRQVLSSLPEEAEIIEVGDFDAAKKLVVERDDIDLLLLDLTMPGGTGLSGLVTLKALQPALPIIIVSATDDAATIRHAVELGASGFISKSASMEAIGEAVHAVLAGDIWTPSDIDLDQAHDPEIEALINKIRTLTPQQTRVLTMLAEGLLNKQIAYELNVSEATVKAHVSAVLQKLGVDSRTQAVILLSRIGNDALSSEPL
>NZ_CP018780.1|WP_007873518.1|374062_375013_+|prolyl-aminopeptidase
MTRNTLYPEIQPFKEEMLQVSPLHRIHVEQCGNPDGKPVIMIHGGPGGGITPAMRRLHDPEKYRIILFDQRGCGRSTPHAELRENTTWDLVADMEHIRAHLGLDKWQVFGGSWGSTLGLAYAETHPEHVSEIILRGIFMVRRFEVDWMYSNGASIIFPDHFEAYQEHIPEDERGDMIAAYYKRLTDRDPQVQLAAARLWARWEGSVLSIQPDPARVEAFGEDLYAVAFARIECHYFQNRGFLESDDQLLRNVERIRQIPGVIVHGRYDICTPFINAWQLKKMWPEADLKIVEDSGHSVTEPGITHELIEATKRFAA
>NZ_CP018780.1|WP_007873519.1|375253_375676_+|large-conductance-mechanosensitive-channel-protein-MscL
MLKEFREFALKGNMVDLAIGVIIGGAFGGLVNSIVNDIIMPVIGLITGGIDFSNMFIQLAGDPKSTLAAAREAGATIAYGNFVTLLINFLIVAWVLFIVVKAMNRLKKKEEAKPEAAAELPRDEVLLAEIRDLLAKQSKA
>NZ_CP018780.1|WP_079211492.1|375834_377001_+|pyridoxal-phosphate-dependent-aminotransferase
MTLIAKLRPEAAQSPESGIVAVANHGRGKPGLIPLWVGEGDLPTPDFIREAAQKGIADGETFYTWQAGIPELREALARYHARHFPQSFKPENFYVTGSGMHAIEMALKATTGAGEEAIYLSPAWPNFVGAAGLAGAVPVPVELEFGANGWVLDPEKIAAAITPRTRAMFINTPSNPTGWTADVETLRFILNLAREKGIWIIADEIYTHFYYGGGRAPSFMDIMEPDDRIIFVNSFSKNWAMTGWRVGWMTVHPSIGPVVENMIQYSNSGVAQFMQRGAVAALDHGDDFIAMQVERARSTRDRLCATLQEIGKVRLAPPQGAFYLFFGVEGVTNSVQAVIDMVDNANVGLAPGSAFGLGGEGFFRLCFCRDPQQVDESAARLVQWINQR
>NZ_CP018780.1|WP_079211493.1|377087_377783_+|YafY-family-transcriptional-regulator
MSRSERLFELLQALRRHRRPVSGKTLAAETGVSIRTLYRDIASLQAQGAVIEGEPGIGYVLKPGFLLPPLMFRPEEIDALVLGARWVAERTDHKLQGAAKGALARISAVLPDELRATLDTSTLLVGPSAKLPTDGIDTAILREAIRTERKVLLDYQDGNGQVTKRVIWPFALSFFDDARVLVAWCELREGFRHFRTDRIAAVDVVEQRYPKRRQTLLREWRETQGIKQREL
>NZ_CP018780.1|WP_079211494.1|377850_378222_+|drug:proton-antiporter
MIDKNSILLFVTDTDASVRFYTKLLGQEPVAASPTFGMFILPSGLGLGLWKKTGVEPAPTAAGGAADLGFRVNEPGMVDSMYVDWKAKGASILMLPTDLDFGRSFVAADPDGHRLRVYTVDDE
>NZ_CP018780.1|WP_079211495.1|378273_379551_-|5-aminolevulinate-synthase
MDYRQFFEEAIDQLHAEKRYRVFADLERIVGRFPRATWRNNGTAREITVWCSNDYLGMGHHPDVIKAMCDTANNTGSGAGGTRNISGNNHPLVELEAELADLHGKEAGLVFTSGFVSNEASISTIARLLPNCLILSDELNHASMIEGVRRSGAEKKIFRHNDVEHLEQLLKAADHSRAKLIVFESVYSMDGDIAPIEKIADLADKYNAMTYIDEVHAVGMYGSRGGGITERDGLADRIDIIEGTLAKAFGALGGYITGSRAIIDAVRSYAPGFIFTTSLPPAVAASATAAIRHLKVSQVERDGQQRQAQRAKDVLSAAGFPVMSSETHIVPILVGDPELCKKASDRLLDVHGIYIQPINYPTVPRGTERLRITPSPLHDDLLIDGLKDALLEVWNTLGIPFAEPDAPKAANSDRIIPLMVSKAGG
>NZ_CP018780.1|WP_064320172.1|379698_380400_-|polysaccharide-deacetylase-family-protein
MAVPILLYHQIAPLPHKKIPFRGLWVHPDKFRNQMAWLKRLGYQGLSLRDAMPYIKGEKTGKVAVITFDDGFLNNYENALPVLADFGFTATNYFVANQVGGSNVWDQAMGVPLTPCMSVAQMREWAALGHEVGAHTIDHVNLEKIPEDEARQQIALSKTMLEDMLGSEVTNFAYPYGGNHAVHREMCREAGYETATTTVHARARASDDPFGMPRVYVRRRDLAPKFIYRLMTR

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Crispr_ID: NZ_CP018780_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018780_3

663390-663497

Orphan

Consensus_repeat	Method
GAACTGTGTCCGTATCGACCGCCGTTGAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018780_3

>merge|NZ_CP018780|3|663390-663497|CRISPRCasFinder
GAACTGTGTCCGTATCGACCGCCGTTGAGAACGATGTCGGCGAAGGACCAGTTTACGTAAACATGTAATGTTTACAGGAACTGTGTCCGTATCGACCGCCGTTAAGAA

>NZ_CP018780|3|3|663390-663497|CRISPRCasFinder
GAACTGTGTCCGTATCGACCGCCGTTGAGAA	CGATGTCGGCGAAGGACCAGTTTACGTAAACATGTAATGTTTACAG
GAACTGTGTCCGTATCGACCGCCGTTAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018780.1\|WP_079211684.1\|671216_671588_-\|DUF423-domain-containing-protein	unknown	unknown	gnl\|CDD\|225238
NZ_CP018780.1\|WP_007874242.1\|668409_668667_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP018780.1\|WP_064320361.1\|661673_663380_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NZ_CP018780.1\|WP_079211677.1\|659002_660256_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP018780.1\|WP_079211680.1\|663621_664641_-\|endonuclease	unknown	unknown	gnl\|CDD\|225565
NZ_CP018780.1\|WP_079211683.1\|670457_671108_+\|antifreeze-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211675.1\|649271_652214_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NZ_CP018780.1\|WP_079211682.1\|669587_670136_-\|DNA-topology-modulation-protein-FlaR	unknown	unknown	gnl\|CDD\|181235
NZ_CP018780.1\|WP_007874215.1\|647135_647846_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP018780.1\|WP_079211681.1\|666838_667546_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|183298
NZ_CP018780.1\|WP_007874220.1\|652394_654749_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP018780.1\|WP_079211685.1\|671603_672725_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181255
NZ_CP018780.1\|WP_079211672.1\|645430_646978_+\|Do-family-serine-endopeptidase	unknown	unknown	gnl\|CDD\|273938
NZ_CP018780.1\|WP_079211678.1\|660385_661261_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NZ_CP018780.1\|WP_064320363.1\|664756_666259_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP018780.1\|WP_064322387.1\|668716_669370_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP018780.1\|WP_039859604.1\|658091_659000_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP018780.1\|WP_007874241.1\|667611_667971_-\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|227074
NZ_CP018780.1\|WP_079211676.1\|655156_657808_-\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|237585
NZ_CP018780.1\|WP_079211673.1\|647842_649243_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP018780.1\|WP_079211684.1\|671216_671588_-\|DUF423-domain-containing-protein	gnl\|CDD\|225238	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown].	4.05058e-28
NZ_CP018780.1\|WP_007874242.1\|668409_668667_+\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	0.000182893
NZ_CP018780.1\|WP_064320361.1\|661673_663380_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.9443e-103
NZ_CP018780.1\|WP_079211677.1\|659002_660256_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.41548e-85
NZ_CP018780.1\|WP_079211680.1\|663621_664641_-\|endonuclease	gnl\|CDD\|225565	COG3021, COG3021, Uncharacterized protein conserved in bacteria [Function unknown].	6.81557e-44
NZ_CP018780.1\|WP_079211675.1\|649271_652214_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NZ_CP018780.1\|WP_079211682.1\|669587_670136_-\|DNA-topology-modulation-protein-FlaR	gnl\|CDD\|181235	PRK08118, PRK08118, DNA topology modulation protein.	1.06416e-58
NZ_CP018780.1\|WP_007874215.1\|647135_647846_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.64603e-83
NZ_CP018780.1\|WP_079211681.1\|666838_667546_+\|glutathione-S-transferase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	1.91967e-69
NZ_CP018780.1\|WP_007874220.1\|652394_654749_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.58113e-60
NZ_CP018780.1\|WP_079211685.1\|671603_672725_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181255	PRK08153, PRK08153, pyridoxal phosphate-dependent aminotransferase.	0
NZ_CP018780.1\|WP_079211672.1\|645430_646978_+\|Do-family-serine-endopeptidase	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.36505e-162
NZ_CP018780.1\|WP_079211678.1\|660385_661261_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	9.20599e-86
NZ_CP018780.1\|WP_064320363.1\|664756_666259_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP018780.1\|WP_064322387.1\|668716_669370_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	5.0206e-42
NZ_CP018780.1\|WP_039859604.1\|658091_659000_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.60265e-12
NZ_CP018780.1\|WP_007874241.1\|667611_667971_-\|DUF2147-domain-containing-protein	gnl\|CDD\|227074	COG4731, COG4731, Uncharacterized protein conserved in bacteria [Function unknown].	5.0458e-25
NZ_CP018780.1\|WP_079211676.1\|655156_657808_-\|aminopeptidase-N	gnl\|CDD\|237585	PRK14015, pepN, aminopeptidase N; Provisional.	0
NZ_CP018780.1\|WP_079211673.1\|647842_649243_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.69895e-53

>NZ_CP018780.1|WP_064320361.1|661673_663380_+|electron-transfer-flavoprotein-ubiquinone-oxidoreductase
MSEAPAIASQELPERESMEFDVVIVGAGPAGLAAAIRFKQINPELSVVVLEKGGEVGAHILSGAVVDPSGIDQLLPGWREEEGHPFKTPVTADHFLLLGPAGSVRLPNFAMPPLMNNHGNYIVSLGNVCRWLGTKAEELGVEIYPGFAATEVLYNDEGAVIGVATGDMGVERDGSHGPNYTRGMALLGKYVLIGEGARGSLAKELIARFKLDEGREPAKFGIGLKELWQVDPSKHKPGLVQHSFGWPLDMKTGGGSFLYHLEDNMVAVGFVLHLNYKNPYLSPFEEFQRFKTHPAIRDTFEGGKRLSYGARAITEGGFQSVPKLSFPGGALIGCSAGFVNVPRIKGSHNAVLSGILAADKIAEALAAGRANDEPIEIENSWRNSAIGKDLKKVRNVKPLWSKLGTVMGVALGGLDMWTNQLFGFSFFGTLKHGKNDAQSLEPAAKHKKIDYPKPDGVLTFDRLSSVFLSNTNHDENEPVHLQVADMKLQQTSEHDVFAGPSTRYCPAGVYEWVDADGNSAADPQAKDVRFVINAQNCVHCKTCDIKDPNQNINWVPPQGGEGPVYVNM
>NZ_CP018780.1|WP_079211678.1|660385_661261_-|uracil-DNA-glycosylase
MTDDRETLDMEGLLRFYAEAGVDMPLSDTPIDRFAEAQRQPVRSAPAQQENRSTSSAERPRAQQQQPRQAATPSPTSRPVQASSDVPDNAQIALAREAALQAATLDELREKLAAFDGCNLKFTAKNLCFADGDPSSDIMFVGEAPGRDEDMEGLPFVGKSGQLLNRMIEAIGLKREGVYIANTIPWRPPGNRTPTPVETELCRPFIERQIELAAPKVLVALGGPAGKALTGATEGILRLRGNWKVHRTPSGIEIPVMPTLHPAYLLRTPAQKRFAWRDFLAVKMKLAELTE
>NZ_CP018780.1|WP_079211677.1|659002_660256_-|MFS-transporter
MAGQLLPIAALLASTFLMLLAGGLAGILLPIRGGIEGWSTTTIGWMGTTYALAFTIGCIVIPHLVRRVGHVRVFSALLTLLSIALLLHSLIVNPYAWMIFRGIAGFSLAGSYMIIESWLNERVTNETRGKIFSIYMIITMLGLMCGQYILPFGDATTVTLFIICAIIYASALLPTTLSSAQSPNPLTQASLDLKGLYRRSPAAAVGSFIAGIVAGTWSFLAAIYGEMNGLSTFGIATMLACAMIGGAIFQYPLGRASDVVDRRFVMVIAGAIGFVLSAIMLLVHPTSPYALYIMMFLFGSVLYSIYSLNVAHANDYADASEFVKISGGLLIIYGTGSMIGPALSGPLMDLMGASGFFVTMALAYAVYGLHAFWRIRRFERPAVSDQKTEFKIYTPDGQPTPETMQLDPRAEGSPGQA
>NZ_CP018780.1|WP_039859604.1|658091_659000_+|DMT-family-transporter
MLGISLKVASVAVFVGMSTLLKAADGIPLGQLIFFRSFFAVLAILVYFALRGQLSGILQTRHGFSHFWRGMVGVGAMSLSFYALTKLPLPEAIAINYASPLIAVVLGALILHEVVRLYRWSAVVIGLFGVMIIIWPRMTLFAEGNVGHNEAMGALAALGGAVMAAFAMMLVRRLVQTERTSTIVIYFSISASVIALVSVPFGWVAPSWPQLAMLIGAGIAGGIAQILLTECYRHAPMSTIAPFEYTSMLLGLGIGFLFFGDIPTFEMLIGSVIVMGAGGYIIYREHQLAIAPHKTNTPQQAQ
>NZ_CP018780.1|WP_079211676.1|655156_657808_-|aminopeptidase-N
MRTETGQTFRLEDYRPTPYAIPQTKLDFTLEPEKTIVRAELTIERRAGTAADTPLVLDGDELNFVSISLDGKALNDNSYSVTPDKLEITDLPDAERFTLEIVTEVNPTTNRQLSGLYRSSDVYCTQCEAEGFRRITYYYDRPDVLSVYTVRIDAEKAATPILLANGNPVEHGAVVGNADRHFAVWHDPHPKPSYLFALVAGSLDVVKDHFTTQSGHPVDLAIYVEHGKEDRALYAMDALKRSMRWDEEKFGREYDLDVFNIVAVSDFNMGAMENKGLNVFNDKYVLADPETATDVDYAGIEAVIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDHEFSADERSRPVKRIAEVKILKAQQFPEDSGPLSHPVRPREYSEINNFYTATVYEKGSEVVRMIRTIIGPELFRKGMDLYFERHDGDAATIEDFIKVFSDVSGQDFSQFALWYDQSGTPKVEASFSFDATKETYTISFTQSLAPTPGQPVKKPTHIPIAFGLLGSDGKDIQPSSVEGGDVHDGVIHLHRVSETLTFHGIKERPVPSLLRGFSAPINLVSPLNSEDRVFLALNDSDPVARWQALTGIFTQALLEGAKRVRGGYLPETDTKIIELAGRIASDESLDAAFRALCLTLPSESDIAREMGENVDPDAIFASRDHLIAAIGSAYAKDFAALYTRLEQQDAFSPDAVSAGKRALRNVLLDYLSRHENSPARAAQQFADGDNMTERAAALSVLVHRFGDSHEAQGALASFERRFGDDGLVMDKWFIVQATRPGDKALEAVRALTKHKLLSFDNPNRVRALIGAFSASNPTGFNRKDGAAYNFFADIILAIDPENPQLAARLLTALRSWRSLEDARREHARAALARIAGTQKLSTDLRDIVDRTLA
>NZ_CP018780.1|WP_007874220.1|652394_654749_-|PAS-domain-containing-sensor-histidine-kinase
MASTDAYDATAGKRRDSGRKRKKGRLSGHAKLLAGPAYGKFAAVEPALRRLVPALIIIFLIILGVARVFSMLSWREDIELQHKAALSAATANLAQMIERAANGTQAGAQMSPKDLDNTIAEFRSRGLSSSGMTVALVNDDSVIVTASGPATDIIGKRADDVFSDIQPLFMFAERAGVLTIVMNGEAAYGTVSKPMTVPYAIVAAEPESTIFAEWKRAVSLNVTLFAGTTGVMFAILYAYFSQAARAREADDLSGQIQRRIDMALARGRGGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLAFGDVSAIINPEDGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIAAENDLHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFSEYAGLPVWTLKPGVPRNEVDAHTRPFSFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGLVSIGTDITQIKQHQERLVDSERRLMATIHDLSIARKGERDRVRELSELARKYGQEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRMISLQADEKNITVETRIEEAMQLNADRRAVKQVLINLLSNAVKFTSHNGHITVRARKTGSALFMTIQDTGVGIPKSALRKIGQPFEQVENQFTKTHSGSGLGLAITRSLAELHGGWLRIRSTEGIGTVVSVCIPDRRQKAIVSHEAEIHAA
>NZ_CP018780.1|WP_079211675.1|649271_652214_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MAAEDTKALFFDRNLCGLTPLDSGRAKSFFTDLIQRSKEENLSDVDALLHQPKAEAFLAAVLDLSPFIREALTRHPGILQRLIAKTPETALSDIMGEISASGTEEGASETSLMSDLRRLKREAHVLIALCDLGQVFNTETTTGWLTDLAEACTGAAIRFLLRDADRAGKIKLVDQANPEKESGWIVLGMGKFGARELNYSSDIDLIVFIDSERPSIIDPYECVDTFSRLTRRLVRILQDRTADGYVFRVDLRLRPDPGSTPLAIPVGAALHYYEGRGQNWERAAMIKARPVAGDRESGLQVLAELAPYVWRKYLDYAAIADVHSIKRQIHAHKGHGDIAVRGHNVKLGRGGIREIEFFVQTQQLIAGGRFPELRGNQTVPMLARLAERGWITEKARDALAKEYYFLRDVEHRIQMIADEQTHILPEDDEGFARVAHMMGYADPAEFSDVFLAALKVVEKQYAALFEQAPELGTATGGNLVFTGDVDDPGTLETLSSMGFERPSDICRVIRTWHFGRYRATQSAEARERLTELTPALLQAFAETKRADESLLRFDSFLQGLPSGIQLFSLLQSNPRLLNLIVMIMSAAPRLAEVITRNPHVFDGLLDPAIFSEMPTRHYLEERLRAFLGSASDYEEVLDRLRIFAAEHRFLIGIRLLTGAIDGVRAGRAFSDLAELMIGKAFEAVETELQRRHGKVSGAKVALLAMGKLGSRELTAGSDVDLILLYDHDVDTDETDGEKPLAPSQYYIRLTQRLIAALSAPTAEGVLYEVDMRLRPSGNKGPVATHIESFGKYQRSEAWTWEHMALTRARPIHGDADFIDFIKGEIDEVLSAPRDTTKIAKDVREMRGLIYQQKPPRDDWDFKLKPGGIVDLEFIAQFAVLTGKLVTGPRPLGTEDVLSGLDPSFADPASSDMLVEAHRFYTNLSQTIRLCLGSDASREEFIPGMIDLLCRAAELPDIKRVEHQLAELATNVRASFDELIK
>NZ_CP018780.1|WP_079211673.1|647842_649243_+|HAMP-domain-containing-histidine-kinase
MMGRFSALMRTTAARLSTLYLLLFAVGAVALVFYMTNLSASIINTQTQEALGEEVASIGKAYARGGIPQLVRTIDYRSRQPGAYLYLVADPSGRILSGNVEGVEPGVLDTDGIVERAFKYRRYGEQGTETEHRAIAVVIALPNGMRLLVGRDLGEPERFRDLVRRSLMLALGIMGVGALLIWFFVGRRALKRIDEVSRASQRIMDGDLTGRLPVNGSGDEFDRLSGNLNVMLGRILELNEGLKQVSDNIAHDLKTPLTRLRNRAEEALSGKKAGTEYREALEDIIGESDQLIRTFNAILMISRLEAGYSSENLENMSVAPIVSDVSEMYEPVAEDAGVKLTLGDLIDVPLHINRELVGQTVSNLVDNAIKYALNSENTATVTLSMERDPQWVRIVVADNGPGIPEDKREQATERFVRLEESRTQPGSGLGLSLAKAVMKLHGGALRLEDNGPGLRAVLEFPLLKDS
>NZ_CP018780.1|WP_007874215.1|647135_647846_+|response-regulator-transcription-factor
MKILVIEDDREAARYLEKAFIEAGHSADIAGDGEIGYTLAENGSYDVLVVDRMLPKRDGLSVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSSPREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLKAGRAKSSSASAKVE
>NZ_CP018780.1|WP_079211672.1|645430_646978_+|Do-family-serine-endopeptidase
MSKITTSKYRKGVAAVALSAALAGAFVATGPMGVMNNARAEAVSVTPPQQAGFADLVEKVRPAVVSVRVKKDVQETANSGSQFSGPPGFDQLPDGHPLKRFFRDFGMEPRGDARPDSRRPGRAPKGRPGHERPVAQGSGFFISEDGYLVTNNHVVSDGDAYSVVLDDGTELDAKLIGTDPRTDLAVLKIDDSKRKFTYVKLGDDSKIRVGDWVVAVGNPFGLGGTVTSGIVSARGRDIGAGPYDDFIQIDAAVNKGNSGGPAFDLSGEVIGINTAIFSPSGGSVGIAFAIPASTAKQVVDQLIKKGSVERGWIGVQIQPVNKDIAASLGLAEEKGALVASPQADGPAAKAGIKAGDVITAVNGETVQDPRDLARKVANIIPGEKAALTVWRKGKAEEVDITIAAMPQDLGKADTQSGGGGDTEQGETLDSYGLTVTPSEEGDGVVVTNVDPDSDASDRGIRSGDVIVSVNNQVVKNAADINKAITEASKAGRKAVLLQLQSNDQSRFVALPIDQG
>NZ_CP018780.1|WP_079211680.1|663621_664641_-|endonuclease
MSKRRENLSLLLLITAVLVSVPLVLGFLGSAHPMLDSFGHFRPHLAILMGLLALPLLFTKMRREGAMILLFAILAFSTTLGAARNLLNGSSSAQADVPTTGARYSLVQINLRYNNPEPKRVLQMVAQEKPDVITYQEAGADWAMWIDILKGTYPYHFECRKDGSNMRVGILSRRPFSEGSAQLCLGDDRLAMTSIDFSGTSVNVAAYHAVLPWPYGQAAVIDALVPELQTFSGPMIIAGDFNATPWSNAVHRIEKSSTTKAMTGIGGTWMLQNLPIKLAPYVGLPIDQVLVSHEIEAPAATTREDVGSDHLPIRLEFSVPMPVRPDTDEPETQSVMLSF
>NZ_CP018780.1|WP_064320363.1|664756_666259_-|AMP-nucleosidase
MTQRIEQTFIPDIKTPPFVEPEVFTDASAAVAALRKLYDRNTAFLRTAFEQLAKGEARPQRYRAFYPEICLSTSSFAHVDTRLAFGHVTTPGDYAATITRPDLFDHYLNEQIRLLMRNHGVAVTVRESATPIPIHFAFMEGTYVEASVANAFTHPMRDLFDVPDLAATDDKIVNADFDPVPGEPMPLAPFTAQRVDYSLHRLAHYTATSPKHFQNFVLFTNYQFYMDEFCAYARKLMADGGGGYDSFVEPGNAITRAGESEPSSGIPLQRMPQMPAYHLQRADHSGITMVNIGVGPSNAKTITDHVAVLRPHAWLMLGHCAGLRNTQELGDYVLAHAYMREDHVLDDDLPVWVPLPALAEIQVALEEAVEEITGLEGYDLKRIMRTGTVATIDNRNWELRDQRGPVQRLSQARAVALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMATEFYKRQVAQHLQIGIRAMEKIAAMPDERLHSRKLRSFFETAFQ
>NZ_CP018780.1|WP_079211681.1|666838_667546_+|glutathione-S-transferase
MAEQTKPIEFYYWPTPNGFKISIMLEELGVPYEVKYVNIGKGDQFQPDFLKIAPNNRMPAIIDPEGPGGEPISVFESGAILQYLGRKFGKFYPTDERKRVAVDEWLMWQMGGLGPMSGQAGHFRVYAPEKVQYGIDRYTNEVNRLYGVLNRQLEGKDFIAGEYSIADIASIGWINAYKNYDQQLEDFPNLKRWYETMNARPTVQRGLLVGKEEREKSNLANDKEAQKILFGQKAR
>NZ_CP018780.1|WP_007874241.1|667611_667971_-|DUF2147-domain-containing-protein
MIRTFIMGMTAAVALTAGLAAPAFAEEAIVGTWKRPNGTIISYAACGGGKYCGTVQTGEYKGKSIGTMSGKDGSYKGEVNKLDEGKTYTGKASVKGNTLSLSGCVMGGLICKSESLARQ
>NZ_CP018780.1|WP_007874242.1|668409_668667_+|sel1-repeat-family-protein
MTQFQSVTQHDKAGSQDRILLEMGLKYAIGRDCEIDVVEAHKWLNIAAIRGNQKAERMRNQVAATMSKSELAAALRGAREWMTSH
>NZ_CP018780.1|WP_064322387.1|668716_669370_-|YitT-family-protein
MTDIADSASPLVDVTSKLGGDRHRLYEDAIAMLIGTSFIALGITLYSQATLMTGSTAGIALLIQYATGIGFGLLYFVINLPFYYFAAKRMGWPFTIRTFIAVALLSLFAKLIPLCVDFSSINPLFAALMGGTLMGMGVLALFRHRSGVGGVNILALYLQDAYGIRAGWFQLALDIIIMLGSLFFIPWENMLLSLVGAIAMNVIIAINHKPGRYLGIS
>NZ_CP018780.1|WP_079211682.1|669587_670136_-|DNA-topology-modulation-protein-FlaR
MIKRIMIIGGAGSGKSTLARSLGAITKLPVVHIDTIYWLPNWTMRSRDEIGLLSDEVADRDEWIFEGNHSETMAHRAARADMIIFLDISTPTRVWRVLRRTLRHYGQSRPDMAEGCDERFDWEFLKFVANYRKNGRIRAKSFLEGAPSHLKKHHLRSPKDVEQFLSETRNEIIRKNERSKLS
>NZ_CP018780.1|WP_079211683.1|670457_671108_+|antifreeze-protein
MSIRTITAFAGTAIILGASAFAFSSPASALTMKECSAKYQAAKDAGTLGDVKWNDFRKAQCGDDAAAAPAAPAAPAKKAAAPAKSAATTVADDAKGLTMKQCSAKYQAAKDAGTDGGAKWNDFRKAECGPGADAVALTTDGNSEPAAPTVAAPKGVKFPTAVSAKYSSESAGKARMHTCLEQYHTLKDANALGGLKWVQKGGGYYSLCNARLKGNS
>NZ_CP018780.1|WP_079211684.1|671216_671588_-|DUF423-domain-containing-protein
MSIQRNDQPRNALFGTLAGLCGALAIASYAGAAHGGENHLGTIAPMLLGHAPVLLVLSLIVPNSRVANIGGALLVVGLVLFCGDLFMRDMTSNRLFPMAAPTGGSLMILGWLVVGISSWFKKT
>NZ_CP018780.1|WP_079211685.1|671603_672725_-|pyridoxal-phosphate-dependent-aminotransferase
MASPRLTPLVESLPSTVPFIGPETLELQRGKPFVARIGANESSFGPAPSVIEAMKQETSEVWKYGDPENYALRHAIAAHHGVKPENVMPGAGVDALLGLVVRQYVQQGNKVINSLGGYPTFNYHVAGFGGTLLTVPYRDDKPDLDALIDKARTENPALLYIANPDNPMGTWHEGSDIQAFIERVPETTMLILDEAYCETGPASAFPPFELERPNILRMRTFSKAYGLAGIRVGYVLGCASAIKSFDKIRDHFAVNRIAQAAAIAALKDQEYLRDVVEQIHGGRNRIAKIAKQNGLKPIPSATNFVTIDCCHDGAFATSVLNGLIERDIFVRKPGAPVLDRCIRVSVGVKAQLDKFEIALPDALAAARNAYKTA

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Crispr_ID: NZ_CP018780_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018780_4

1067775-1067887

Orphan

Consensus_repeat	Method
AGCATTTCCAGCAAAAGTGCGAAGCGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018780_4

>merge|NZ_CP018780|4|1067775-1067887|CRISPRCasFinder
AGCATTTCCAGCAAAAGTGCGAAGCGGTTTTGCGTGGGATAATGCGATAAAGCAAAAAAGACCGTTCCAATGATTCAGTATTACAGCATTTCCAGCAAAAGTGTGAAGCGGTT

>NZ_CP018780|4|4|1067775-1067887|CRISPRCasFinder
AGCATTTCCAGCAAAAGTGCGAAGCGGTT	TTGCGTGGGATAATGCGATAAAGCAAAAAAGACCGTTCCAATGATTCAGTATTAC
AGCATTTCCAGCAAAAGTGTGAAGCGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018780.1\|WP_079211861.1\|1058165_1059488_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NZ_CP018780.1\|WP_007874986.1\|1060868_1061459_-\|PRC-barrel-domain-containing-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211859.1\|1052672_1053920_-\|FliO/MopB-family-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP018780.1\|WP_152027318.1\|1075397_1075640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211865.1\|1067972_1068818_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP018780.1\|WP_079211868.1\|1071074_1071776_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211869.1\|1071777_1072155_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079212568.1\|1061754_1065540_-\|vitamin-B12-dependent-ribonucleotide-reductase	unknown	unknown	gnl\|CDD\|236049
NZ_CP018780.1\|WP_079211867.1\|1070221_1071067_+\|prohibitin-family-protein	unknown	unknown	gnl\|CDD\|259799
NZ_CP018780.1\|WP_079211874.1\|1075720_1075987_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079212567.1\|1054332_1056903_+\|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP018780.1\|WP_064322413.1\|1066241_1066730_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240024
NZ_CP018780.1\|WP_079211870.1\|1072154_1072643_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240031
NZ_CP018780.1\|WP_079211863.1\|1066975_1067473_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP018780.1\|WP_007874975.1\|1051617_1052034_+\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
NZ_CP018780.1\|WP_079211860.1\|1056927_1058133_+\|TIGR03862-family-flavoprotein	unknown	unknown	gnl\|CDD\|274820
NZ_CP018780.1\|WP_079211875.1\|1075983_1076331_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211866.1\|1068892_1069651_-\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|223986
NZ_CP018780.1\|WP_079211862.1\|1059471_1060713_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NZ_CP018780.1\|WP_079211872.1\|1072827_1075305_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222797

Protein	Function_ID	Function_description	E-value
NZ_CP018780.1\|WP_079211861.1\|1058165_1059488_+\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	4.92301e-32
NZ_CP018780.1\|WP_079212567.1\|1054332_1056903_+\|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.76838e-103
NZ_CP018780.1\|WP_079211859.1\|1052672_1053920_-\|FliO/MopB-family-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	6.60036e-07
NZ_CP018780.1\|WP_079211865.1\|1067972_1068818_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	7.45781e-10
NZ_CP018780.1\|WP_079212568.1\|1061754_1065540_-\|vitamin-B12-dependent-ribonucleotide-reductase	gnl\|CDD\|236049	PRK07562, PRK07562, vitamin B12-dependent ribonucleotide reductase.	0
NZ_CP018780.1\|WP_079211867.1\|1070221_1071067_+\|prohibitin-family-protein	gnl\|CDD\|259799	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of the SPFH (band 7) domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains, in addition to being stable scaffolds, may also be dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a hetero-oligomeric complex with Bap-37 (prohibitin 2, an SPFH domain carrying homolog). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologs have been implicated in yeast longevity and in the maintenance of mitochondrial morphology.	7.07785e-47
NZ_CP018780.1\|WP_064322413.1\|1066241_1066730_-\|NUDIX-hydrolase	gnl\|CDD\|240024	cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.96572e-48
NZ_CP018780.1\|WP_079211870.1\|1072154_1072643_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240031	cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.35796e-15
NZ_CP018780.1\|WP_079211863.1\|1066975_1067473_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	1.69057e-109
NZ_CP018780.1\|WP_007874975.1\|1051617_1052034_+\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	1.4648e-50
NZ_CP018780.1\|WP_079211860.1\|1056927_1058133_+\|TIGR03862-family-flavoprotein	gnl\|CDD\|274820	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.	2.27142e-159
NZ_CP018780.1\|WP_079211866.1\|1068892_1069651_-\|competence/damage-inducible-protein-A	gnl\|CDD\|223986	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only].	1.29363e-97
NZ_CP018780.1\|WP_079211862.1\|1059471_1060713_-\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	5.37239e-26
NZ_CP018780.1\|WP_079211872.1\|1072827_1075305_+\|hypothetical-protein	gnl\|CDD\|222797	PHA00452, PHA00452, T3/T7-like RNA polymerase.	0

>NZ_CP018780.1|WP_079211863.1|1066975_1067473_-|xanthine-phosphoribosyltransferase
MSLPDKAFPVSWDQFHRDARALAWRIADMDREWRAIVAITRGGLVPAAIVCRELGIRLIETVCVASYHDYTSQGEMEILKGISAPLLENGGEGVIVVDDLTDTGKTAAIIREMMPKAHFATVYAKPKGRPLVDTFVTEVSQDTWIYFPWDMGFTYQEPIAGGKRG
>NZ_CP018780.1|WP_064322413.1|1066241_1066730_-|NUDIX-hydrolase
MKTQAKKFVATEKRILTPSGRLQQVAALVYRYEAHELQILVITSRGTGRWIIPKGWPQVGRTLADTAAREAYEEAGVRGEISSQPIGSFDYCKNDLPPECINQFTVAVYALHFVERAKDWPEREQRVCEWVSPREAAARVDEVDLKRILLDFGDSPIAIAAE
>NZ_CP018780.1|WP_079212568.1|1061754_1065540_-|vitamin-B12-dependent-ribonucleotide-reductase
MKIERRFTKENQSAYADIEFRTATSEIKNPDGSVVFRLENIHVPAQFSQVAADILAQKYFRKAGVPANLKKVEENDVPSWLWRSVADEDKLAKLPEGERFGSEMDARQVFDRLAGTWTYWGWKGGYFDTEEDASAFRDELAYMLATQRVAPNSPQWFNTGLHWAYGIDGPGQGHFYVDWQTGKLTKSKSAYEHPQPHACFIQSVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSYLRGEGEKLSGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEEYIDWKVKEEQKVAALVTGSKIVKQHLAAIMKACVNCEAGSAETRDDCFDPSKNPALKREVRAAKKNQVPENYIKRVIQFARQGYTDIQFKTYDTDWDSEAYLTVAGQNSNNSVSLKDEFLRAVEEDGDWNLTARRDGRVMKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCPTAGPIRASNPCSEYMFLDDTACNLASINLLTYRNKDGSFDINAYEHTARLWTMVLEISVMMAQFPSKEIARLSYEYRTLGLGYANIGGLLMTNGIPYDSDEGRAIGGALTAIMTGVAYATSAEMARELGAFPSYEPNAEHMLRVIRNHRRAAHGETEGYEGLAVNPVALIAEDCPDQDMITHARAAWDKALELGEKHGYRNAQATVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPEALRTLGYAESQIAEIEAYAVGHGNINQAPGVNPSSLKSKGFTDEKIEVLNAALKSAFDIKFAFNKWTLGEDFCKDVLKLTDEQLNDFSFEMLPALGFAKKDVEAANVHVCGAMTLEGAPFLKEEHYAVFDCANPCGKIGKRYLSVDSHIRMMAAAQPFISGAISKTINMPNEATVEDCKSAYLLSWKLALKANALYRDGSKLSQPLNASLISDDEDEDDAVEALIEAPAAARAVQITERVVEKVIEKIVHEREKLPNRRQGYTQKAVVGGHKVYLRTGEFGDGRLGEIFIDMHKEGAAFRAMMNNFAIAVSLGLQYGVPLEEYVEAFTFTKFEPAGMVIGNDAIKTATSIIDYVFRELAVSYLGRNDLAHVDTSDFSNTALGKGIKEGKTNLVSTGWTRGYKPTLVSNSPSGNESKGSAQTAPSVSNVTTLKSSSPRPATVGLVTDGATAFKREFEEQPAAAPQQDNVAATELFSDKAASDAASARAETANAAKKLEADRRIKSMMQGYTGDSCTECQNFTMVRNGTCLKCDTCGATSGCS
>NZ_CP018780.1|WP_007874986.1|1060868_1061459_-|PRC-barrel-domain-containing-protein
MLRTALLTTTCALFIGGTAFAQTATPAPTDAPAAAPEMPVSSQNMFGSPPAENADQVGFMEAKDGQMLVSSFIGQSVYESDAPDAASVGKLNDLIASPEGEIEAAVIGVGGFLGVGEKDVAVSPDQLQLATRSDGKKWLVIKASKEQLTEAPAFDRSALFADGVADKTATGETNAPAADTPAADPAPAPATPAPAQ
>NZ_CP018780.1|WP_079211862.1|1059471_1060713_-|mechanosensitive-ion-channel
MSEFFIAHPWAQTVASLGGLFLAAFVANFLIKAILLKVLDRIVQRTAFGQDEELKQNGVIGHLANIVPALIISSGIAAVPELPQTALTVISNVATAFIILTLAFTVSAVLSVVDTLYSRREESKDRPIKGYIQVSKLVIYIIAIVLIIATLLDRSPVILLSGVGAMAAVLILVFQDTLLSLVASMQIASSNMVRVGDWIEMKNLDANGDVVEIALYTVKVQNFDKTITTIPIRKLITEPMKNYRGMQQSGGRRIKRALFIDQATIRFLSENELQSLASIDQLTGYLSKKEKEIADWNAKLGDKAKNPVNTRRFTNIGTFRAYVETYLRNHPGVHKGMTLLVRQMDPTPDGLPLEIYCFTNTTVWASYEQIQSDIFDHLYAVMPEFGLYPFQNPSGGDFRKLSLADLPAVTAKP
>NZ_CP018780.1|WP_079211861.1|1058165_1059488_+|serine-hydrolase
MIRFLKIAGSIVLLILLGVVLWLGFRPPELLKVGTGYAAKIVCSNVFLANRNPQEVLAFDVQAPGHPLLKFVDVSVDNGSETVTAHIFGFFAPSKAVYRAGLGCANVHDEDLRPQLTMPMDAAALIADININPAVQSIIENPALAGPGMRAVAVLKDGQIIAETYAQGFDADTPLLGWSMTKSVMATLIGMRISEAKMDLQRDHLLPEWEGDDRSKIKLADLLGMQSGLKFDEDYGNVTDVTRMLFLENNMTEFAASLPLEAQPGTKFNYSSGTANILSKLYMESFDTPEEAFTYAQKVLFEPLGIASATLEADASGIFVGSSYLYANARDWLSIARLLLDKGKVGDKQLLSEDFVRLMQTPATASQGRYGSAQTWLQSAGIQAGTEGIPADAFWMSGHDGQSLIIVPSMNLSIIRLGLTPSRTGYKVPELQAAIIKALQ
>NZ_CP018780.1|WP_079211860.1|1056927_1058133_+|TIGR03862-family-flavoprotein
MRERVIAIFGGGPAGLFAAEHLSALGYSVTIYEQMPTVGRKFLLAGKSGLNITHSEDFAQFAQRYGASNDRLWPALQQFTPQNLRDWADALGAETFVGSSGRVFPKAMKASPLLRAWVRKLEAQGVKILTRHKWIGFQSGKPLIESPAGIGPISCDAALFAFGGASWPKLGSNSAWLEPFTEQGIQIAPMRPANCGFDVSWSELFAERFAGEPLKSVTISSKAGVTQGEFVITRGGVEGSLVYAHSAALRDDLERDGHANLILDLAPGRTLERLTLDLSRQDKKLSISNLLRKGAGLTGVKAALVLEFQREKDTAKLAQTIKALEVPLLRPRPIEEAISSAGGIEWSEIDEHYMLTKLPGVFVAGEMIDWEAPTGGYLLTACFAIAKAAAEGMDYWLSRGS
>NZ_CP018780.1|WP_079212567.1|1054332_1056903_+|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator
MSRHTDNNYPKPLVMPKRGSSAALRLLIIGVVLTVAALVYFVFRDQLGDGFAIILMGILSMIGVFYLFGAATGLIHFSQRHGEQDLAHTFMDTLPEGTVISDARGQIVYANHAYAGMTGIASADGIRSLDNILTSEPAASDAIYRLTNAVRDGHSAQEEVRISGGLSREGQSSAAPVWYRIKARPVDGGQDFKGQLVAWQIADISDERAEQERFFQELQEAINHLDHAPAGFFSADPSGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQAARDGTRGTSRTIVLDRAEGEDSSAALRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFAPVVDRDAVDNRVKLENVVHERDRETFNKALAAAFAGQASISPVDTVLPGNEDRHIRFYMSAVTDLGETSEEAAIISAVETTEQKALENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLSNYRASDPSFPDIMNIKQNANRAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIGLKIEHGRDVWPVKADLGQFEQVAVNLAVNARDAMPEGGEITLRTRNVKANEAAKLNYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLPRHIEEKGADNAPVAVKEKKVEKAADLSGSATVLLVEDEDAVRMGGVRALQSRGYTVHEAASGVEALEVLEELNGQVDIVVSDVVMPEMDGPTLLRELRKTHPDIKFIFVSGYAEDAFARNLPADAKFGFLPKPFSLKQLATAVKEMLEKED
>NZ_CP018780.1|WP_079211859.1|1052672_1053920_-|FliO/MopB-family-protein
MKEWLSGLVGESAANIVGFILIFAIILGGIFVVLSIIRRFGGGTFATNGRTGRQPRLSVMDAAAVDSRRKLVLIRRDDVEHLLLIGGPTDVVVEQNIVMESRANARSQASRIEPEHIERFRQHEASITTEVSERPALSQQSQQTIQKDDAIQLNSPIDTSVQRKPEPVRETPVQQAAPEAPQFRAPPRPPVPPVTPQAPKVSETPVAPARPQQPPRPTPNYPPQPRTVLPAARPAEQPQAPRLHPAYPLSQVSRGVLSSTSGLGASAAAAATVAAADLGSVTPEREVTPSAKTPAPEIGDILQSPAVTTSSAPDFTPAAPKLEPVAVVSDQETETDDGLEDLGGALHDAIMADLETDTSAASGNKEPEMLEVDIFEEELLGSLDISPNGGKPSDDIEDEMEKLLGELTKDETRKF
>NZ_CP018780.1|WP_007874975.1|1051617_1052034_+|RNA-polymerase-binding-protein-DksA
MSELIDLDYRPTEDEPFMNERQKSYFRAKLVAWKNDILREARETLEALQQENANHPDLADRASSETDRAIELRARDRQRKLISKIDAALGRIDEGTYGFCEETGDPISLKRLDARPIATLSIEAQERHERREKVYRDD
>NZ_CP018780.1|WP_079211865.1|1067972_1068818_-|universal-stress-protein
MSYKTVVAYSRSEAELKRVLSAVGLLMRKFPDIHVIGLYSIPSPIVYADPNGFIDPGMFELHDKQHKEISERLQERFEEEMRRQGANHEFRITRSETGTAADGVLTSCLGAELLVAGQPDPEDAATNDETADTLVFNSSCPVLLVPHTPVIAMEALDRIVVAFNGKREAARATFDALPLMRNASRTEIVWIDPPEREGEDEALAGSDLAESISRHGLAVSVTPLASHNRYAQDVLREHIIAQRADLLVMGAYSHSRLRELVFGGVTRAMLNDLPVLTLFSR
>NZ_CP018780.1|WP_079211866.1|1068892_1069651_-|competence/damage-inducible-protein-A
MTNTPQQAVTAAMLAIGDELLSGRTKDKNIGHLADVLTAAGIDLKEVRIVPDDEDAIVSALNALRPGYDYVFTSGGIGPTHDDITADAVSRAFEVPCIYDEKAMKLLGDNYAKRDLEFTDSRKRMARMPQGSEHIDNPVSAAPGFHIGNVYVMAGVPSVFQAMLDNVLPTLKTGRKLLSKAVRCPFGEGVIGAPLTAIQKENPETIIGSYPKFENGRFSTELVVRGSDVAKIDIAVAAIEAMITTLQNQGAA
>NZ_CP018780.1|WP_079211867.1|1070221_1071067_+|prohibitin-family-protein
MNAKLIALGAAALVAASASFGSFYVVDQGERGVVVRNGSITAVKESGLGFKMPFVDSVSIIDIRSKAKTYTDVTAISSDQQVATLALSFNYSIPGDKAALVYSEYGSEENLLSRLVERQLMAQVRNVFGRYNAHRSVTERAQLNADIQLALQQSVDGPVTIETVQIENVAFSEAYNDKIEERMSAEIEVQKLKQNAEREKVQAQITVTKAEAQAGAIRATAQAQADAVRLQGEAEAAAIKAKGAALRDNPTLIDLTAAEKWNGSLPTTMVPGSATPFVNVK
>NZ_CP018780.1|WP_079211868.1|1071074_1071776_+|hypothetical-protein
MRDHGKVIGPSIADNKSLLTKLIQQEPMLFGAEAKFADKQGGPLTDLALLALENIGVDRTDLLVDTRSHMLKPGWFPAIPGWHCDEVPRGKDGQPDLSLIPEDPKDRPNHYLIVLDAGTCAMTHFYPTSDRNLRGDGIIWEGMKLHKEDANPQSTVWGHCDRLIRKWAFPCEIEPTLSGHLYEFDQFDFHTATSAKLDGWRWFFRATTKSKRPVANEIRRQVQVYLGNENGGW
>NZ_CP018780.1|WP_079211869.1|1071777_1072155_+|hypothetical-protein
MDQPKPRVLVADGKVWWAIIDLHPWARQLSTAPSDHAAMKSRINLLPYRLRSVVSEWVKNNVPKDHLSVKKFRKHGEAGELGYRHRYLAVSSEHVRDVLQYIQIKAEGGDYRARWSRLPDSRTAA
>NZ_CP018780.1|WP_079211870.1|1072154_1072643_+|NUDIX-domain-containing-protein
MDQPIAYTKEGRPLFDNTPTVVCVIVPDNCHRFYLAVKRANDPGEGLWALPGGYHMRGETWQEAGAREVLEETGYVIDPKKIKLLSIETDEYDNNLIVALSHYPESPNRLPTDGEASDVLWISQVGNPDDWAFPRHLAALESHMEKRRKDALWMRPRQKSYA
>NZ_CP018780.1|WP_079211872.1|1072827_1075305_+|hypothetical-protein
MNALTPIQGAVELDPAYLRQIDLEIEMVGLGKDRYWAKTKKDIEKDRGAGTQTGRYLVQQVIGPLAEGIKLFVDDAYSGRPGPRAVAAKLIKDMDFEVVAYLAVRALISRLLFKPNVPMLGLARLIGNSVEAEARFASFEADAPALYNTIDRNLTKTGATPSHKALVLKYAMGKNDLPWDSWTRTDCIHLGMKLIELCQEHSGIIEFAEQQVTFSGAYKSQYLVNFTPKVDEWVKQSLVKGADFHPLYLPTIIRPKPWTSLEGGGYYSNAVKPLRLVRGMRKAHRKLLEEADLSTVFAGVNAIQETPWQINTSVLDVMQQLAKTNSSIAGMVPEDDLKLPDKPHDIETNEEALRTWKWAARDVHVANIRLRNDRLKQEQLLDLAERFRNETAVYFPHTLDFRGRAYPVPQALNPQGSDPVKALLRFTEGKPLGEQGARWLAIHGANCFGVDKVPFEDRVSWVREHVDQIWRSAMAPLENLWWTEADNPWCFLAFCFEWSSFLALPDHFVSHLPVALDGSCNGLQHFSAMLRDPVGGAAVNLIPSDRPQDIYKQVADVVLGKLKAFANGEDEEKARWAYAWRHFGIDRKVTKRPVMVLPYGGTARSCLKYVDEAIREKIAGGKEHNLGEELGQAIAWLSSLVWSSIGDVVVAAREAMDWLQGAARVAAKENKPLSWVTPSGFIVHQAIFNTKEHRVKTRIAGALTVFVDWRESLKINPNKQATSLSPNYVHSMDASAMMLTVAHMWKAGFRSFAMIHDSYAVHACDTQMLSDVLRQEFVRMYRVNPLVAFKQRIAETLDDPDKLKDLPASGTLQIEEVLKSAFFFA
>NZ_CP018780.1|WP_152027318.1|1075397_1075640_+|hypothetical-protein
MNNKITIRYGAAHHSVSVGDVTIDFCKAHRDVRYQTRKTVIEGLRELGYFGEQGKRKPKGPRKVTRFKGKKGHGTLARHG
>NZ_CP018780.1|WP_079211874.1|1075720_1075987_+|hypothetical-protein
MPKFNRDVMHMAQPKAVSDASLTILNVLQDSRPEVQIMGAAAVFLALSEHLKVPAQDVFTATKNLINDQDGKRVEFRAVQAYLEGELN
>NZ_CP018780.1|WP_079211875.1|1075983_1076331_+|hypothetical-protein
MTKHTFKAGDRVRRINHDNNSVVRVGTEWTVASDDNGWLDLKETKHSGGASRNFELVVPAKKPQPNLKANFSIPREIITEAAKAYVKEVYGVTLVSAQLSYDTAPVPLHAEIKAA

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Crispr_ID: NZ_CP018780_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018780_5

1102963-1103072

Orphan

Consensus_repeat	Method
GGCTTGCGGGTTCAAGTCCCGCCGTCCGCACCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018780_5

>merge|NZ_CP018780|5|1102963-1103072|CRISPRCasFinder
GGCTTGCGGGTTCAAGTCCCGCCGTCCGCACCAACTAGCCCCGGAAGAAAAAAGGACTTAAAATCCGTCGCCTTTTAGGCTTGCGGGTTCAAGTCCCGCCGACCGCACCA

>NZ_CP018780|5|5|1102963-1103072|CRISPRCasFinder
GGCTTGCGGGTTCAAGTCCCGCCGTCCGCACCA	ACTAGCCCCGGAAGAAAAAAGGACTTAAAATCCGTCGCCTTTTA
GGCTTGCGGGTTCAAGTCCCGCCGACCGCACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018780.1\|WP_079211906.1\|1101804_1102830_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP018780.1\|WP_079211904.1\|1100867_1101317_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211910.1\|1107351_1108095_+\|alanyl-tRNA-editing-protein	unknown	unknown	gnl\|CDD\|225427
NZ_CP018780.1\|WP_079211902.1\|1099769_1100225_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379462
NZ_CP018780.1\|WP_152027320.1\|1096848_1097088_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211914.1\|1111050_1112541_-\|acetyl-CoA-hydrolase/transferase-family-protein	unknown	unknown	gnl\|CDD\|274588
NZ_CP018780.1\|WP_007875014.1\|1110636_1110798_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211903.1\|1100249_1100636_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197713
NZ_CP018780.1\|WP_064320632.1\|1112891_1113269_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|319937
NZ_CP018780.1\|WP_079211912.1\|1108966_1109488_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP018780.1\|WP_079211909.1\|1106320_1107349_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|182672
NZ_CP018780.1\|WP_079211907.1\|1103190_1104447_+\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NZ_CP018780.1\|WP_079211900.1\|1098967_1099408_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079211899.1\|1098047_1098692_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227077
NZ_CP018780.1\|WP_152027246.1\|1094980_1096212_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP018780.1\|WP_079211905.1\|1101422_1101815_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP018780.1\|WP_079211911.1\|1108109_1108964_+\|3-mercaptopyruvate-sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP018780.1\|WP_079211913.1\|1109489_1110278_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP018780.1\|WP_152027321.1\|1104744_1106154_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP018780.1\|WP_079211901.1\|1099390_1099684_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018780.1\|WP_079211906.1\|1101804_1102830_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.36288e-22
NZ_CP018780.1\|WP_079211910.1\|1107351_1108095_+\|alanyl-tRNA-editing-protein	gnl\|CDD\|225427	COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only].	1.17261e-97
NZ_CP018780.1\|WP_079211914.1\|1111050_1112541_-\|acetyl-CoA-hydrolase/transferase-family-protein	gnl\|CDD\|274588	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase. This family of CoA transferases includes enzymes catalyzing at least two related but distinct activities. The E. coli YgfH protein has been characterized as a propionyl-CoA:succinate CoA transferase where it appears to be involved in a pathway for the decarboxylation of succinate to propionate. The Clostridium kluyveri CAT1 protein has been characterized as a acetyl-CoA:succinate CoA transferase and is believed to be involved in anaerobic succinate degradation. The propionate:succinate transferase activity has been reported in the propionic acid fermentation of propionibacterium species, where it is distinct from the coupled activities of distinct nucleotide-triphosphate dependent succinate and propionate/acetate CoA transferases (as inferred from activity in the absence of NTPs). The family represented by this model includes a member from Propionibacterium acnes KPA171202 which is likely to be responsible for this activity. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins represented by this model, possibly erroneously.	0
NZ_CP018780.1\|WP_079211903.1\|1100249_1100636_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	0.00121985
NZ_CP018780.1\|WP_064320632.1\|1112891_1113269_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	gnl\|CDD\|319937	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.	7.68618e-19
NZ_CP018780.1\|WP_079211912.1\|1108966_1109488_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.61225e-09
NZ_CP018780.1\|WP_079211909.1\|1106320_1107349_+\|cysteine-synthase-A	gnl\|CDD\|182672	PRK10717, PRK10717, cysteine synthase A; Provisional.	0
NZ_CP018780.1\|WP_079211907.1\|1103190_1104447_+\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NZ_CP018780.1\|WP_079211902.1\|1099769_1100225_+\|hypothetical-protein	gnl\|CDD\|379462	pfam14090, HTH_39, Helix-turn-helix domain. This helix-turn-helix domain is often found in phage proteins and is likely to be DNA-binding.	1.32076e-10
NZ_CP018780.1\|WP_079211899.1\|1098047_1098692_+\|hypothetical-protein	gnl\|CDD\|227077	COG4734, ArdA, Antirestriction protein [General function prediction only].	5.6646e-33
NZ_CP018780.1\|WP_152027246.1\|1094980_1096212_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.32995e-114
NZ_CP018780.1\|WP_079211905.1\|1101422_1101815_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	0.00751021
NZ_CP018780.1\|WP_079211911.1\|1108109_1108964_+\|3-mercaptopyruvate-sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	1.40354e-116
NZ_CP018780.1\|WP_079211913.1\|1109489_1110278_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.46003e-56
NZ_CP018780.1\|WP_152027321.1\|1104744_1106154_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	6.52918e-152

>NZ_CP018780.1|WP_079211906.1|1101804_1102830_+|site-specific-integrase
MAVRERGKVWQVDVRLGDHGRLRPTFPTKAEAEAWEMDAKHAHKMGRPLPPTETNITQGGGRITTLGQLVPEVEKAWQTDGVTAIKDLLRNVKCFVTWYGENRHPNEVDEIVIDRYVNYLRTEKGNSGSTVNRKMSAVRVLLKRAKRYRLISFLPEFQRFDETKGSLNFLNFGEENPILGKLEHLGYDAHYDLVCFLLDTGCRISEALNLEWRTVRGDRVTFENRKNGQFGTVPLTKRASEALKRRKKLGKHPDKPFGELTYKGAHGVLRQVYAQLGGEFAKITQPFHVYRHSCASRLAIRNVNAKRIMEWMDHSSIIVTQRYMKLAVTDLDEAKNALEVA
>NZ_CP018780.1|WP_079211905.1|1101422_1101815_+|winged-helix-turn-helix-transcriptional-regulator
MTASNTDPKADQATLARKLAAILALFQGDDNTMQINLLTTFLHIKANGETPHKKLELLMDATGASVSRNIAKLSEEGYKKRDGQRDPGMGLVKSTEMSNDKSAKAATLTPAGQAVFDEFVRILRSGNNGS
>NZ_CP018780.1|WP_079211904.1|1100867_1101317_+|hypothetical-protein
MTVQSVNAGGNLAEIIGAIAKEASEAVGALLKKGQGADVSRQVEGIVNGAKRLDGWGYVYEIPASPYATPNVPEGYQTVLGYMFDQNPGIFTFVKNPKNAWKVEEAWLQAEAARRGLKLPRVRSPKYLSELGQSECWAYPLELLREKLF
>NZ_CP018780.1|WP_079211903.1|1100249_1100636_+|helix-turn-helix-domain-containing-protein
MSKLLDLPPKELRRRAIIARGVLDIHAALRKFQDSPAMTMTILAVALGWYEGRPLDTSGVARIASLPRTTVTRHLKALEAEGFLRFSRTQRWVFPIPRNTAAVVNVSVYDDLELIITRTGRELTKLDT
>NZ_CP018780.1|WP_079211902.1|1099769_1100225_+|hypothetical-protein
MKDLHSFKRGDKVRLVNANVSLNRQASPFVRGDYDGIPKGAEGEVLHASPNNDLLTVHFTQGGTTVLLHWRLEAVKAEKPAPVVPTLPMTKAVLDLLKQKGTLTSLEAQGVLRCRSLSKRISELKQLGWPIFREMKWDTTGQRYARYSLAL
>NZ_CP018780.1|WP_079211901.1|1099390_1099684_-|hypothetical-protein
MATTDDLCFHVEQWADDGGRLETLLSASCNLIIGIGAFEKAVELRANKRLTLRHGARVIRSHTPEPFRLQDEKNRAELERQIEAAQAAYKARSVDKR
>NZ_CP018780.1|WP_079211900.1|1098967_1099408_+|hypothetical-protein
MKLATIQCPAAALPVIVVLPPETPVSTVLRAARDLISVPERWTKWGFHFAEKPETYEEAEEMALTPVEQATCFCSWGAINAVCGAGEGFVSSAAHTALSHTIWREARIHGIPSFNDNPTTAHADVLRMFNRAIRHAEAKEALAFIH
>NZ_CP018780.1|WP_079211899.1|1098047_1098692_+|hypothetical-protein
MPRIYAACLASYNNGVLHGRWIEASSDVDEMQDEINAMLRESKFPNVIRQDYLCEPCGETEVFTVSYDEVPDGERLCPHCGEKMKPGAWYGSAEEWAMHDSEDLPSYFGEYPGLQAIADYVEFLEDHDEHDEDDLRAIFEEFRDPSEADNAMRNDFLSICERFRDYADDVADDILSECNSETAKQYFDFEAFARDLQHDYRVIDVPSGVAIFNN
>NZ_CP018780.1|WP_152027320.1|1096848_1097088_+|hypothetical-protein
MSRGYAVYSSDMLSGLIVVAKRGMPKRLFKQAAIRFEVWQCIGNEPAMTYKATTGSLNEGLEVGIKALLAGAINVALAQ
>NZ_CP018780.1|WP_152027246.1|1094980_1096212_-|IS3-family-transposase
MTSKTTNKFSPEVRARAVRMVTEHEAEHSSRWAAVSSIAAKIGCSAHTLHEWVKKAEVDSGKRAGLPSDVAEKMKALERENRELRQANEILRKASAYFAPGGARPPTEAMISFIDEHRSVLGVEPICKLLPIAPSTYYETLTKRTDVDRLSVRARRDMAMKIEIRRVFNENFRVYGVRKVWRQLQREGYDIARCTVARLMRMMGLQGVIRGKPVKTTMSDKTAPCPLDRVNRHFFAPAPNMLWLSDFTYVATWQGFVYVAFVIDAFARRIVGWRASRTAHAGFVLDALDQALHDRRPVHRGGLVHHSDRGSQYVSIRYSERLAEAGIEPSVGSVGDSYDNALAETINGLYKAEVIHRRGPWRNFEAVEFATLEWVDWFNNRRLLEPIGNIPPAEAEERYYAMLDAPAMVA
>NZ_CP018780.1|WP_079211907.1|1103190_1104447_+|threonine-ammonia-lyase-IlvA
MNAFVKAVAQAETAMRALFPETPLQLNDYLSRKYGAEIWLKREDLTPVRSYKIRGAFNFISRAVKTADENAVFVCASAGNHAQGFAFACRHFGRKGVVFMPVTTPQQKIDKTRAFGAEFIEIKLVGDIFDVCYAASQEYAEANKGVMVPPFDHAGIIEGQATVALEIERQLPDGKKPDFVFLPVGGGGLSGGVTQYFTALGWKTAYRFIEPQGAASLKGSLEAGKRIKLSQVDNFVDGAAVAEIGKENFKLLKGFDKNIVITVPENRLCSTIVEMLNIEGVVLEPAGALGIDALKDFKKSELKGKRVVIVVSGGNFDFERLPDVKERALRYEGLKKYFIFRFPQRPGALRSFLDLLGPEDDVARFEYLKKSARNFGSVLIGIETKNAANFKILEKKFAEAGWAYQDITDNQVLADFII
>NZ_CP018780.1|WP_152027321.1|1104744_1106154_+|DEAD/DEAH-box-helicase
MTTENIEHTGGFAALGVTGVLLKGVEAAGMTEPKPIQTQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQKIIALGDKRKGKTARALILAPTRELAVQIEETIRTVAKQAHISTALVLGGVSRLSQIKRMQGGVDVLIATPGRLTDLVRENCVDLSETRWLVLDEADRMLDMGFINDVKRIAKGTHKNRQTALFSATMPKEIAALAQSLLRDPIRVEVAPQGTTAAEITQVVHPVPTKEKRRLLSGLLGDKGMKSVIVFTRTKHGADAVVRHLERDGFDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDAATEDSKLRAVERVTRNKLTIKEAPVKLAPAPAPKFDDAEDRPRSDRKPGSHSVPQKHRRPANKMAKSGEHRSGQGSQGSKPAGAEGTAKPKRPFHRKRRPGGGGGGQRAA
>NZ_CP018780.1|WP_079211909.1|1106320_1107349_+|cysteine-synthase-A
MLNSALDAIGNTPLIRLKKASEITGCEIYGKAEFLNPGQSVKDRAALYIIRDAEKRGLLKPGGVIVEGTAGNTGIGLTFVAKALGYRTVIVIPETQSQEKKDALRLLGAELIEVPAAPYRNPNNYVRLSGRLAEQLAKSEPNGAIWANQFDNVANRIAHIETTAQEIWRDTNGKVDGFVSAVGSGGTLAGTAFGLKDKNADIKIALADPHGAALYSFYTTGELKSEGDSITEGIGQGRITANLEGFIPDFSYRVGDADALDILFDLVQEEGLCLGGSSGINIAGAIRLAKDLGPGHTIVTVLCDYGNRYQSKLFNPAFLRGKDLPVPGWLETKTDVHIPYEG
>NZ_CP018780.1|WP_079211910.1|1107351_1108095_+|alanyl-tRNA-editing-protein
MAYETEALFREDAYLSTAEGSVIALTDTGGIILNQTNFYATSGGQPGDTGFFERADGSRIEIAATVTGESKNEIVHVPAEGQALPAIAEKLVLHINWERRYKLMRMHTACHLLSVACPFPITGAAVGEEESRVDFDLPDASYTKESVTEKLMEMVKANDPVTLRWISDEEFLANPDIVKSKNVRPPVGAGRLRLVVIGENGSVDSQPCGGTHVSETQEVGEIHIGKIEKKGKENRRFRIRFGNAPLV
>NZ_CP018780.1|WP_079211911.1|1108109_1108964_+|3-mercaptopyruvate-sulfurtransferase
MSDKSAFVISRDDLKARLGEPGLAIVDASWYLPAAGRNGRDEYDAAHIPGAVFFDQDVIADKDSGLPHTLPSPELFARHVGAMGITADETIVVYDGPGMFSAPRVWWMFRVMSVKNVLVLDGGFDGWKAANFPVTDEVTKIAATLFTPSFNAAKVVDFAEMSKIVDGRSSQIADARAAGRFTGRDAEPREGMRSGHMPGARNVPVGSLSENGQLKSLDSLREIFASAGVDLNKPVVTSCGSGVTAAVITLALTSLGHEDNRLYDGSWSEWGSRQDTPVVTGEAD
>NZ_CP018780.1|WP_079211912.1|1108966_1109488_+|GNAT-family-N-acetyltransferase
MTEKMMARVTHLEMTARPALSVPVPSGLRLAIMRSTEMPVHFYRYLYEQVGRQHHWMMRRVQSDTEVAEAIHAETAEIHVLYADGNPAGLLELDLSALPETAEILYFGLIPDYQGRGLGKFFLNEAISTAWSHSPQKVAIHTNTLDSPRALQLYQRMGFVPVGWSEEEVTTWD
>NZ_CP018780.1|WP_079211913.1|1109489_1110278_-|GGDEF-domain-containing-protein
MKAALWKAALITLSVVLFSVGSSLAVGFFSGSKPGVIAISLSAAIPLATAFPSLLYIFLQHSKLGEAYTQLEKAHSELQARSRVDHMTGLLNREALFDAMKISRSRIESGTLLVIDADHFKAINDTFGHSVGDRALKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGATGETGIRVAQRIRAEVENTPFHATEYQVYPLTISIGVASAPKNETNSQVLSRADRCLYMAKQRGRNCVVFDEESGRITSASVVSITNGREVARG
>NZ_CP018780.1|WP_007875014.1|1110636_1110798_-|hypothetical-protein
MSILISLLITILVIFLVLYLINMLPLDGKVKQIAQIIVIIIGIISLLKYLAVF
>NZ_CP018780.1|WP_079211914.1|1111050_1112541_-|acetyl-CoA-hydrolase/transferase-family-protein
MLEARIRNTSLRDKIITAEEAASLIKDGMIVGMSGFTRAGDAKAVPLAMAARAADDPFQITLITGASLGHDVDKLLTEAHVLARRMPFQVDRTLRAAINRGEVMFIDQHLSETVEQLRSNQIGPIDYAVVEALAITENGGIIPTTSIGNSASFAILAEKVIVEVNLNQPLALEGLHDIYIPTKRPSRDPIPVTACDSRVGLPYIPIPPEKIAGIVITHENDSASTVEPADGETVAIASHLIKFLLNEVEAGRLDLTLNPLQAGIGTIANAVLNGFAESPFHNLRMYSEVLQDSTFDLFDAGKLDYASGSSITLSPACGERVFSNIDRYRDKLILRPQEISNHPEVIRRLGIIGINTALEFDIYGNVNSTHVDGTHMMNGIGGSGDFARNAYISIFVSKSEAKNGAISSIVPMVTHVDHTEHDVDILVTEQGLADLRGLAPRERASLIINNCAHPDYRDQLNDYFGRACERGGHTPHLLEEAFSWHSRRKQTGTMLK
>NZ_CP018780.1|WP_064320632.1|1112891_1113269_+|glyoxalase/bleomycin-resistance/dioxygenase-family-protein
MNDIANQNVGFGRIAAMIPVKDMARAYHFYGEILGFEKVFENGNPVGFMILRNEKGELHLSLQKDHKAANFNIAHMLVDNVDALHTICKQNGMRIIKGLQDKDYGLRAFVFEDPDGNRIDVGQKI

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Crispr_ID: NZ_CP018780_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018780_6

1582376-1582459

Orphan

Consensus_repeat	Method
CCCGAAAAGTGCGAAGCGGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018780_6

>merge|NZ_CP018780|6|1582376-1582459|CRISPRCasFinder
CCCGAAAAGTGCGAAGCGGTTTTCGGAACAAGATGCGCGCAAAAACAAATAGATGTTGCGGCCCGAAAAGTGCGAAGCGGTTTT

>NZ_CP018780|6|6|1582376-1582459|CRISPRCasFinder
CCCGAAAAGTGCGAAGCGGTTTT	CGGAACAAGATGCGCGCAAAAACAAATAGATGTTGCGG
CCCGAAAAGTGCGAAGCGGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018780.1\|WP_007875966.1\|1575647_1575863_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP018780.1\|WP_039859991.1\|1576143_1576605_+\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573
NZ_CP018780.1\|WP_079212127.1\|1585662_1586757_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|224481
NZ_CP018780.1\|WP_079212123.1\|1578190_1579081_-\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|181025
NZ_CP018780.1\|WP_079212122.1\|1573713_1574175_-\|protease-inhibitor	unknown	unknown	gnl\|CDD\|238052
NZ_CP018780.1\|WP_039859981.1\|1579510_1580032_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP018780.1\|WP_007875964.1\|1574338_1575238_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NZ_CP018780.1\|WP_079212124.1\|1580211_1580934_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP018780.1\|WP_079212128.1\|1586834_1587632_+\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|224413
NZ_CP018780.1\|WP_007875973.1\|1577763_1578045_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_007875982.1\|1584351_1584672_-\|accessory-factor-UbiK-family-protein	unknown	unknown	gnl\|CDD\|225508
NZ_CP018780.1\|WP_079212125.1\|1581024_1582368_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236531
NZ_CP018780.1\|WP_079212593.1\|1582560_1582947_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|172694
NZ_CP018780.1\|WP_079212130.1\|1588848_1589448_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018780.1\|WP_079212129.1\|1587642_1588794_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_CP018780.1\|WP_079212592.1\|1576874_1577531_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293823
NZ_CP018780.1\|WP_007875981.1\|1583422_1583923_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227752
NZ_CP018780.1\|WP_007875994.1\|1589776_1590709_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP018780.1\|WP_007875980.1\|1583022_1583370_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP018780.1\|WP_079212126.1\|1584824_1585670_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599

Protein	Function_ID	Function_description	E-value
NZ_CP018780.1\|WP_007875966.1\|1575647_1575863_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.03452e-28
NZ_CP018780.1\|WP_039859991.1\|1576143_1576605_+\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	2.97096e-10
NZ_CP018780.1\|WP_079212127.1\|1585662_1586757_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|224481	COG1565, COG1565, Uncharacterized conserved protein [Function unknown].	4.48975e-152
NZ_CP018780.1\|WP_079212123.1\|1578190_1579081_-\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|181025	PRK07544, PRK07544, branched-chain amino acid aminotransferase; Validated.	0
NZ_CP018780.1\|WP_079212122.1\|1573713_1574175_-\|protease-inhibitor	gnl\|CDD\|238052	cd00104, KAZAL_FS, Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the cognate enzyme as substrate. The reactive site peptide bond is a combining loop which has an identical conformation in all Kazal inhibitors and in all enzyme/inhibitor complexes. These Kazal domains (small hydrophobic core of alpha/beta structure with 3 to 4 disulfide bonds) often occur in tandem arrays. Similar domains are also present in follistatin (FS) and follistatin-like family members, which play an important role in tissue specific regulation. The FS domain consists of an N-terminal beta hairpin (FOLN/EGF-like domain) and a Kazal-like domain and has five disulfide bonds. Although the Kazal-like FS substructure is similar to Kazal proteinase inhibitors, no FS domain has yet been shown to be a proteinase inhibitor. Follistatin-like family members include SPARC, also known as, BM-40 or osteonectin, the Gallus gallus Flik protein, as well as, agrin which has a long array of FS domains. The kazal-type inhibitor domain has also been detected in an extracellular loop region of solute carrier 21 (SLC21) family members (organic anion transporters) , which may regulate the specificity of anion uptake. The distant homolog, Ascidian trypsin inhibitor, is included in this CD.	0.000767368
NZ_CP018780.1\|WP_039859981.1\|1579510_1580032_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.08133e-15
NZ_CP018780.1\|WP_007875964.1\|1574338_1575238_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	5.37525e-30
NZ_CP018780.1\|WP_079212124.1\|1580211_1580934_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.49683e-75
NZ_CP018780.1\|WP_079212128.1\|1586834_1587632_+\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|224413	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism].	3.80484e-105
NZ_CP018780.1\|WP_007875982.1\|1584351_1584672_-\|accessory-factor-UbiK-family-protein	gnl\|CDD\|225508	COG2960, COG2960, Uncharacterized protein conserved in bacteria [Function unknown].	8.07262e-23
NZ_CP018780.1\|WP_079212125.1\|1581024_1582368_+\|HAMP-domain-containing-protein	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	1.81702e-46
NZ_CP018780.1\|WP_079212593.1\|1582560_1582947_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|172694	PRK14206, PRK14206, fluoride efflux transporter CrcB.	1.0465e-32
NZ_CP018780.1\|WP_079212129.1\|1587642_1588794_+\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	8.14873e-98
NZ_CP018780.1\|WP_079212592.1\|1576874_1577531_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293823	cd07737, YcbL-like_MBL-fold, Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes Salmonella enterica serovar typhimurium YcbL which has type II hydroxyacylglutathione hydrolase (EC 3.1.2.6, also known as glyoxalase II) activity, and has a single metal ion binding site, and Thermus thermophilus TTHA1623 which does not have GLX2 activity and has two metal ion binding sites with a glyoxalase II-type metal coordination. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	7.93669e-112
NZ_CP018780.1\|WP_007875981.1\|1583422_1583923_-\|hypothetical-protein	gnl\|CDD\|227752	COG5465, COG5465, Uncharacterized conserved protein [Function unknown].	4.07635e-92
NZ_CP018780.1\|WP_007875994.1\|1589776_1590709_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP018780.1\|WP_007875980.1\|1583022_1583370_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.34357e-72
NZ_CP018780.1\|WP_079212126.1\|1584824_1585670_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	4.89583e-115

>NZ_CP018780.1|WP_079212125.1|1581024_1582368_+|HAMP-domain-containing-protein
MKSPWKSITRWFARRMPKGLYARSLIIIIAPMVLLQSVIAYVFMERHWQMVTERLSTAVVRDISAIIDILETYPQEPGYDNLIRLSQQRLGLNISILPPDPLPPPGPKPFFAILDYFLSEEITRQINRPFWVDTVGDSDLIEIRIKLDDKVLRVFARRSQAYASNTGIFLTWMIGTALVLLIIAIAFLRNQIKPIQQLSQAAESFGKGRPMPEGFRPHGAEEVRRAGIAFIQMRSRIERQIEQRTAMLSGVSHDLRTILTRFKLQLALAGHSIDTEPLNQDIADMQTMLEGYLAFARGEGSEEAATYDVRLLCDKLANEARLRERGFKYSIEGDSEVNVRPNAFSRLVSNLVSNAFRHAQNVELAITHDEGWLKIVVDDDGPGIPEDRREDVFKPFVRLDEARTQDSGGTGGLGLAIARDIARSHGGDIDLEDAPTGGLRAIIRIPA
>NZ_CP018780.1|WP_079212124.1|1580211_1580934_+|response-regulator-transcription-factor
MGSNDAMAVEESNLSDDAPHLLVVDDDTRIRSLLSQYLTTSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVSLTRSLREQKSVPILMLTALSETDSRIDGLSAGADDYLPKPFDPRELILRINNILRRGATPTQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMAIFAERAGETIPRHELTGQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKLSIE
>NZ_CP018780.1|WP_039859981.1|1579510_1580032_+|MarR-family-transcriptional-regulator
MNSTNDMNYISNPLTSLEADDLNVIELLFFSYRDFTADPDLILEKIGFGRAHHRVLYFINRKPGMTVAELLDVLRITKQSLSRVLKQLIDTGHVVQATGLHDRRHRKLYPTKSGRQLTLALALPQSRRIARALEESGAAEREVIERFLYNMVNPERRAQIDDFAATETAVEAS
>NZ_CP018780.1|WP_079212123.1|1578190_1579081_-|branched-chain-amino-acid-aminotransferase
MAAIPFDQREGFIWQDGEFVAWKEAKVHVLTHGLHYASAVFEGERAYGGEIFKLTEHTERLHESARILGFEIPYSVDEINDACRELLKKQGFEDAYVRPIAWRGSESLGVSAQNNRIHLAIAIWQWPSYFSPEEKMKGIRLDIAEYCRPDPRTAPSRSKAAGLYMICTISKHAAEAKGYADALMLDWRGQVAEATGANVFFVKDGALHTPKPDCFLDGITRRTIIDLAKRRGLEVIERVIMPEEMETFSECFLCGTAAEVTPVSEIGKYHFKPGEITNLLMNDYTAEVQPKRIAAE
>NZ_CP018780.1|WP_007875973.1|1577763_1578045_-|hypothetical-protein
MESLLPIILQLVSGAVGGNIAGAVKNLSLGTAGNTVAGGIGGVILGQLLPLLSGGGLDSVLNGVVGQLAGGGVGGIVLTAIIGLIKNSLASKA
>NZ_CP018780.1|WP_079212592.1|1576874_1577531_-|MBL-fold-metallo-hydrolase
MGQLQAIIVPVTPFQQNCTILFDAETKKGVVIDPGGDLERIKEAIASQNVEVEAIWITHGHIDHAGAASELRDALGVDVIGPHKDDEFLLNSLVTTGLKYGLTEGVRNITPDRWLEEGDTVTVAGHLFNVFHCPGHAPGHVVFYNPEARFAIVGDVLFNGSVGRTDLPGGDHDALIRSIKEKLLPLGDDVGFLCGHGTGSRFGEERRNNPFLNNIGYA
>NZ_CP018780.1|WP_039859991.1|1576143_1576605_+|BA14K-family-protein
MNKLLKTAILAVASIAAVSAPLAAASADSWGRRGWDRGDWNRGGWDRPYHRHRDRTGDAVAAGVIGLAAGALLGSALSQPQPTYVQPAPVYAPPPPPPAYYPAPPARSVQYRVGYEPWSRGWYQYCSDRYRSFNANTGTYRGYDGRDHFCSAN
>NZ_CP018780.1|WP_007875966.1|1575647_1575863_+|cold-shock-protein
MAQTGQVKFFNSEKGFGFIKPDDGGADIFVHISAVQASGLAGLADNQKVSYETEPDRRGKGPKAVNITVTE
>NZ_CP018780.1|WP_007875964.1|1574338_1575238_+|lytic-transglycosylase-domain-containing-protein
MKRSHLAIATVAVFQLLCWPEAINSAFAENGSEAEIYGPPMPPKKAEPTVARICELIEASAEHRGIPKDFFARLIWKESRFDHRAVSPVGAQGIAQFMPYTAKERGLADPFDIEQAIPASASFLSELKGAFGNWGLAAAAYNAGPTRVSNWMRSGGFLPLETEDYVLDLTGAPADNFASGNEITNRPLDAKLTFTEACKRLPIVRTATIPMSQIKPKPWGIQVAGNFRRSVAVNQWSRLRKQFSSVLAGHNPVISRVRTPMARRGIYAVRIGADSRSEADNICSKLRAVGGACIVLRNR
>NZ_CP018780.1|WP_079212122.1|1573713_1574175_-|protease-inhibitor
MLLNRISRLSLLAGALFLAGCVAEGGPDYRPPVRPGPSQPQMCQMIYAPVCAERGSSRKTFGNACQARADGYRIVGNGQCTSRPGPGSGWGGERPGRPPHQGNRPGRPGPGAGACTREYMPVCARRGNDRQTFPNRCEAERAGYRITGGGQCR
>NZ_CP018780.1|WP_079212593.1|1582560_1582947_-|fluoride-efflux-transporter-CrcB
MQGTIVVAIGGALGSVLRYWFAIWLAPVSKDLPWGTIVVNIIGSFAIAFFGAMTMASSRFEVPEIWRIAFMVGICGGFTTFSSFSVQTFELLRLGMPGRALMNVGISLFVCLAATALGYVVGQAISKV
>NZ_CP018780.1|WP_007875980.1|1583022_1583370_-|tRNA-binding-protein
MSGTETINWADFEKVDIRTGTIVEAVPFPEARKPAFKLKIDFGDKIGIKKSSAQITKHYQPEDLVGRQIMAVVNFPPRQIGPFMSEVLTLGFPDENGDVVLAAIDKKVQDGVKLF
>NZ_CP018780.1|WP_007875981.1|1583422_1583923_-|hypothetical-protein
MSLLELEFAREAHPVDVIEHVANSNDWTFERTGDDEIAISVAGNWTDYHISFSWMEDFEALHLACAFDIKVAEPRVNEVMRLLSLINEKLLMGHFDLWQQEGAIMYRQSLLLAGGAEPTSRQVEVLLSAALEACENYFQAFQFVVWSGVSAREALESVLFETVGRA
>NZ_CP018780.1|WP_007875982.1|1584351_1584672_-|accessory-factor-UbiK-family-protein
MTSGSNRVLDELAKLVTDAAGAAQGVRREVETALRSQSERVLNTLDVVQREDFEAVREMAIKARAENAALLVKIEALEARLAKFEVDSTAKTAKTSASAAKSKDNS
>NZ_CP018780.1|WP_079212126.1|1584824_1585670_+|prolipoprotein-diacylglyceryl-transferase
MIETLLPVSALAFPNIDPVIFSVGPLAVHWYGLGYVVGIMFAWWYGKKLLRNHRLWGNNQPPMQPEALDDFVIWAALGVVLGGRIGYVLFYNFSYYLSNPLAIPAVWDGGMSFHGGILGTTIAMIWFARSRGIKVWSMFDVIAAGVPVGLGVVRVANFINSELWGRVSDVPWAFYFPNGGPEPRHPSQLYEAFLEGFVLFFVLLLLVWVGKKLKAPGFIAGTFVLGYGLSRIIVEFFREPDAQLGYLFGGWLTMGMILSLPMVLIGLWAMWRANRAAAKNA
>NZ_CP018780.1|WP_079212127.1|1585662_1586757_+|class-I-SAM-dependent-methyltransferase
MPEATLKDRLKRLIGTTGPISVADYMAACLGDREQGYYTTREPFGRDGDFITAPEVSQMFGELIGIWCVGVWDALGRPDNAVLCEIGPGRGTLMSDILRTLAKLAPQMAASIRVAMVETSPRLIEKQKEKLAPLHASIEWFERFADIPDGPLILVSNELFDAIPIRQFVKADGRFVERLIALNEQDELQFVSGAGGMDAALLPTGHQTVPDGTIFEAAPARTALMQEIAQRIAAMRGAALSIDYGHLQSGFGDTLQAMLKHAYDDVFAHPGEADLTSHVDFDMLEKTARNCGCLTATMTQGDFLLAMGLIDRAGRLGARRDETFQNKIREDVERLAAPDQMGTLFKVLAVADQQTKIFPFDTSQ
>NZ_CP018780.1|WP_079212128.1|1586834_1587632_+|peptidoglycan-editing-factor-PgeF
MIDKPQPLRSPLLDGPAGSNGKRIAHGFFTRKGGVSDGIYAGLNVGSGSNDVPELVTENRRRVAETLGIASDHLMTVHQVHSPDVVYVTEPLSTPRPKADAMVTNVPGIAIGALSADCGPVLFADHEAGVIGSAHAGWRGAFTGVLENTVEAMIKLGARRENIIAVLGPTIGPENYEVGPEFYSEFTGKDASYTKYFEPSDKEGHKLFDLWTFITDRLTSAGVRAEALRQCTYADEDQFYSYRRTTHRGEPDYGRQIAAIAIVED
>NZ_CP018780.1|WP_079212129.1|1587642_1588794_+|aminopeptidase-P-family-protein
MALHFEPEEFAARRDRLILKMEEEKLDALLLFAQESMYWLTGYDTFGFCFFQCLVVKADGTSVLMTRSADLRQARHTSNIENIVVWTDRDNANPAIDLRNILTELDLLGTRIGIEYQTHGLTGANARKLDEQLQSFAKLYDASGMVDSLRLLKSPAEIAFTKRAAELSDDALDAALKLVKAGASEADILAAMMAANFAGDGDYPANEYIIGSGADALLCRYKAGRRTLSANDQLTLEWSGVYRHYHAPMMRTVIIGQPRPEHQKLYDAAREALEAVEEAMTPASTFGDVFDAHSRTMEAHGLTRHRLNACGYSVGARFTPSWMDPQMFYSGNPESIQPDMTLFAHMIIMDSDTETAMTLGQTYLTTNGAALPLSRHSLDIIAK
>NZ_CP018780.1|WP_079212130.1|1588848_1589448_+|hypothetical-protein
MKLNMNKAHLSVMLLLAGLLAACNSTESALNVQGANQQSGQTTTPPTGQTTDPAATPAATTPAQTTTPTAPQRSASLKPGKLYIAPIIGAPVNVVTPLTHRINNDARAKGVELSGNNGADAAYVMKGYFSVLSEDNQTTVLYVWDVMDATGNRLHRIQGQEKVPGAAADSWSIVPPSAMQSIADKTMQEYSTWLAANRA
>NZ_CP018780.1|WP_007875994.1|1589776_1590709_+|ribose-phosphate-pyrophosphokinase
MKLFAGNSNRVLAESVAQYLNIPLGKASVRRFADQEIFVEIQENVRGEDVFVLQSTSYPANDNLMELLIMIDAFRRSSARRITAVLPYFGYARQDRKPGPRTPISAKLVANLITEAGANRVLTLDLHAGQIQGFFDIPTDNLYAVPVIARDVKANYPTGNCMVVSPDVGGVVRARSLAKRIDAQLAIVDKRRERPGESEVMNVIGDVSGKDCLLFDDIVDSGGTLCNAAEALLAKGAKSVTAYITHGVLSGGAVARIASSKLKELVITDSIQPTTAINDAPNIRVLSISSLIGEAVARTAAEESVSSLFD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018780_2	2.1\|369023\|28\|NZ_CP018780\|CRISPRCasFinder	369023-369050	28	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	54068-54095	6	0.786
NZ_CP018780_2	2.1\|369023\|28\|NZ_CP018780\|CRISPRCasFinder	369023-369050	28	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	903037-903064	6	0.786

1. spacer 2.1|369023|28|NZ_CP018780|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

caaagcggtttttggataagatgcgcgg	CRISPR spacer
tgaagcggttttcggataagatgcgtaa	Protospacer
..**********.************...

2. spacer 2.1|369023|28|NZ_CP018780|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 6, identity: 0.786

caaagcggtttttggataagat-gcgcgg	CRISPR spacer
aaaagcggtttttggataagatcatgta-	Protospacer
 ********************* ..*..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

591882 : 637556

Dinoroseobacter_phage(14.29%)

capsid,head,protease,tail,holin,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079211619.1\|591882_593532_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	7.4e-59	31.2
WP_079211620.1\|593533_594118_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_079211621.1\|594280_594748_+	transcription elongation factor	NA	NA	NA	NA
WP_007874109.1\|594749_595745_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_079211622.1\|595913_596591_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_079211624.1\|596587_597892_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_007874122.1\|597936_598299_-	hypothetical protein	NA	NA	NA	NA
WP_079211626.1\|598505_600020_+	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	8.3e-81	42.5
WP_007874129.1\|600088_600805_-	L,D-transpeptidase	NA	NA	NA	NA
WP_007874130.1\|601085_601739_-	haloacid dehalogenase type II	NA	NA	NA	NA
WP_007874131.1\|601964_602561_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.5e-41	44.6
WP_007874132.1\|602970_603411_+	cytochrome c	NA	NA	NA	NA
WP_079211628.1\|603566_604508_+	cytochrome c	NA	NA	NA	NA
WP_064320321.1\|604610_604955_-	hypothetical protein	NA	NA	NA	NA
WP_079211630.1\|605379_606801_+	MATE family efflux transporter	NA	NA	NA	NA
WP_079211632.1\|606957_609051_-	S9 family peptidase	NA	NA	NA	NA
WP_007874139.1\|609122_609542_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_007874141.1\|610271_610700_+	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	6.0e-21	46.8
WP_152027315.1\|610919_611219_-	cytoplasmic protein	NA	NA	NA	NA
WP_007874145.1\|611409_611856_+	hypothetical protein	NA	NA	NA	NA
WP_007874149.1\|611852_612644_+	hypothetical protein	NA	NA	NA	NA
WP_079211633.1\|612719_614045_+	amidase	NA	NA	NA	NA
WP_007874152.1\|614106_614532_-	SufE family protein	NA	NA	NA	NA
WP_079211634.1\|614605_615070_-	hypothetical protein	NA	NA	NA	NA
WP_079211636.1\|615376_617227_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.6e-25	31.3
WP_039859588.1\|617201_618188_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_079211637.1\|618201_618552_+	DUF1491 family protein	NA	NA	NA	NA
WP_007874157.1\|618546_619527_-	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_007874158.1\|619744_620302_-	hypothetical protein	NA	NA	NA	NA
WP_079211638.1\|620294_620891_-	DUF1214 domain-containing protein	NA	NA	NA	NA
WP_079211639.1\|620898_623058_-	penicillin-binding protein 1A	NA	NA	NA	NA
WP_079211641.1\|623368_623878_+	hypothetical protein	NA	NA	NA	NA
WP_079211643.1\|623840_625076_+	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	1.8e-73	39.8
WP_079211645.1\|625103_626297_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	2.0e-66	38.4
WP_079211647.1\|626293_626671_+	hypothetical protein	NA	NA	NA	NA
WP_079211648.1\|626657_627338_+\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	2.1e-31	40.9
WP_079211652.1\|627351_628614_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	2.3e-84	44.0
WP_079211654.1\|628737_629298_+	hypothetical protein	NA	NA	NA	NA
WP_079211655.1\|629294_629633_+\|head	phage head closure protein	NA	NA	NA	NA
WP_153223303.1\|629629_629806_+	hypothetical protein	NA	NA	NA	NA
WP_079211657.1\|629765_630176_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_079211659.1\|630296_630710_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_007874187.1\|630709_631045_+	gene transfer agent family protein	NA	NA	NA	NA
WP_105518303.1\|631041_631257_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_079211661.1\|631263_631812_+\|tail	phage tail tape measure protein	A0A1B0VMG8	Pseudomonas_phage	9.8e-08	39.2
WP_079211662.1\|631813_632443_+	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.2e-49	48.1
WP_079211663.1\|632439_633315_+	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	8.8e-51	36.7
WP_079211664.1\|633311_633746_+	peptidase P60	F4YXU4	Roseobacter_phage	4.1e-33	47.5
WP_079211666.1\|633749_637556_+	host specificity protein	A0A0K1Y6G6	Rhodobacter_phage	8.1e-226	38.7

DBSCAN-SWA_2

906755 : 919734

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079211794.1\|906755_907775_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.5e-17	37.7
WP_064320510.1\|907849_908701_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.8e-32	36.3
WP_079211795.1\|908693_909404_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.3e-43	46.5
WP_064320511.1\|909547_909781_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.7e-07	65.1
WP_079211796.1\|909996_910662_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_079211797.1\|910658_911495_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	6.9e-45	42.6
WP_079212560.1\|911570_912854_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-102	49.1
WP_007874687.1\|912891_913659_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.7e-38	36.9
WP_079211798.1\|913655_914324_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.5e-13	35.5
WP_064320514.1\|914503_915757_+	M23 family metallopeptidase	Q8SBN9	Clostridium_phage	4.8e-18	40.2
WP_064320515.1\|915925_916789_-	ATP-binding protein	NA	NA	NA	NA
WP_007874694.1\|916948_917290_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.4e-12	41.5
WP_079211799.1\|917457_919734_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.1e-52	45.4

DBSCAN-SWA_3

1070221 : 1096212

Mesorhizobium_phage(70.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079211867.1\|1070221_1071067_+	prohibitin family protein	A0A1S6UA41	Serratia_phage	2.2e-43	52.6
WP_079211868.1\|1071074_1071776_+	hypothetical protein	A0A220NRA5	Salmonella_phage	8.7e-25	34.6
WP_079211869.1\|1071777_1072155_+	hypothetical protein	NA	NA	NA	NA
WP_079211870.1\|1072154_1072643_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_079211872.1\|1072827_1075305_+	hypothetical protein	A0A076YJ28	Mesorhizobium_phage	8.3e-272	56.9
WP_152027318.1\|1075397_1075640_+	hypothetical protein	A0A076YNT9	Mesorhizobium_phage	2.1e-10	54.4
WP_079211874.1\|1075720_1075987_+	hypothetical protein	A0A076YM53	Mesorhizobium_phage	1.2e-24	60.9
WP_079211875.1\|1075983_1076331_+	hypothetical protein	NA	NA	NA	NA
WP_079211876.1\|1076474_1077209_+	hypothetical protein	A0A076YJ33	Mesorhizobium_phage	4.0e-65	58.1
WP_079212569.1\|1077241_1077685_+	endodeoxyribonuclease	A0A076YNU3	Mesorhizobium_phage	6.8e-52	70.1
WP_079211877.1\|1077681_1077912_+	hypothetical protein	NA	NA	NA	NA
WP_079211878.1\|1077924_1078119_+	hypothetical protein	NA	NA	NA	NA
WP_161492424.1\|1078172_1078343_+	hypothetical protein	NA	NA	NA	NA
WP_079211880.1\|1078342_1080055_+	toprim domain-containing protein	A0A076YQI9	Mesorhizobium_phage	5.1e-220	65.6
WP_167377090.1\|1080063_1082076_+	DNA polymerase	A0A076YNV1	Mesorhizobium_phage	1.5e-247	64.8
WP_161492425.1\|1082110_1082362_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_079211882.1\|1082304_1083093_+	hypothetical protein	A0A076YQJ3	Mesorhizobium_phage	2.2e-85	64.6
WP_079211883.1\|1083131_1083638_+	hypothetical protein	A0A0K1LM09	Rhodobacter_phage	9.0e-24	41.7
WP_079211885.1\|1083845_1084058_+	hypothetical protein	NA	NA	NA	NA
WP_079211886.1\|1084061_1085663_+	hypothetical protein	A0A076YM66	Mesorhizobium_phage	8.2e-204	68.1
WP_161492426.1\|1085662_1085821_+	hypothetical protein	NA	NA	NA	NA
WP_079211887.1\|1085820_1086633_+	hypothetical protein	A0A2D2W594	Ralstonia_phage	3.2e-31	38.0
WP_079211888.1\|1086632_1087055_+	hypothetical protein	A0A076YNV9	Mesorhizobium_phage	3.7e-55	69.2
WP_079211890.1\|1087266_1087593_+	hypothetical protein	NA	NA	NA	NA
WP_079212571.1\|1088535_1089324_+	hypothetical protein	A0A076YM75	Mesorhizobium_phage	6.2e-112	76.3
WP_079211892.1\|1089394_1089982_+	hypothetical protein	A0A076YQK3	Mesorhizobium_phage	5.9e-59	61.5
WP_079211893.1\|1089981_1092444_+	hypothetical protein	A0A076YL68	Mesorhizobium_phage	1.7e-296	59.5
WP_079211894.1\|1092443_1092905_+	hypothetical protein	A0A1B1IW17	uncultured_Mediterranean_phage	8.2e-16	32.9
WP_079211895.1\|1092904_1093456_+	hypothetical protein	A0A076YNW7	Mesorhizobium_phage	1.1e-30	48.3
WP_152027319.1\|1093470_1094979_+	hypothetical protein	NA	NA	NA	NA
WP_152027246.1\|1094980_1096212_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.4e-101	64.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018782

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018779

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP018781

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP018780

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection