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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019906 Escherichia coli strain MDR_56 plasmid unnamed5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP019909 Escherichia coli strain MDR_56 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP019905 Escherichia coli strain MDR_56 plasmid unnamed6, complete sequence 0 crisprs cas14j,csa3,c2c9_V-U4 0 0 3 0
NZ_CP019903 Escherichia coli strain MDR_56 chromosome, complete genome 4 crisprs csa3,cas3,WYL,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e 0 16 14 0
NZ_CP019910 Escherichia coli strain MDR_56 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP019908 Escherichia coli strain MDR_56 plasmid pMCR1-NY, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP019904 Escherichia coli strain MDR_56 plasmid unnamed1, complete sequence 0 crisprs RT 0 0 2 0
NZ_CP019907 Escherichia coli strain MDR_56 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP019904
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 30357 : 65302 35 Escherichia_phage(40.0%) transposase NA
DBSCAN-SWA_2 74692 : 85708 15 Escherichia_phage(37.5%) integrase attL 73093:73105|attR 79799:79811

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP019905
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 118262 117 Escherichia_phage(35.0%) integrase,transposase attL 85806:85865|attR 110183:111493
DBSCAN-SWA_2 126964 : 128654 2 Saccharomonospora_phage(50.0%) transposase NA
DBSCAN-SWA_3 131752 : 132966 1 Escherichia_phage(100.0%) transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP019903
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019903_1 175608-175759 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019903_2 2672375-2672516 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019903_3 4859278-4860099 TypeI-E I-E
13 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019903_4 4887150-4887727 Orphan I-E
9 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP038506 Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence 11835-11866 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP019283 Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence 42147-42178 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 CP042641 Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence 36520-36551 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP034821 Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence 1557-1588 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP027443 Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence 9506-9537 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP027575 Escherichia coli strain 2013C-4081 plasmid unnamed2 94756-94787 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP027223 Escherichia coli strain 2015C-3101 plasmid unnamed2 65534-65565 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP030188 Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence 61916-61947 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP027590 Escherichia coli strain 2014C-3011 plasmid unnamed2 64165-64196 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP039862 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence 20286-20317 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP033632 Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence 119284-119315 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_AP018798 Escherichia coli strain E2855 plasmid pE2855-2, complete sequence 85099-85130 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 CP012494 Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence 46688-46719 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 CP027320 Escherichia coli strain 2014C-3084 plasmid unnamed1 42116-42147 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NC_013370 Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence 87237-87268 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP026475 Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence 81853-81884 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 MN510445 Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence 70500-70531 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 MN510447 Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence 47861-47892 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP012491 Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence 62997-63028 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 MH422554 Escherichia phage P1, complete genome 87194-87225 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NC_050152 Enterobacteria phage P7, complete genome 93995-94026 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 MH445380 Escherichia virus P1 isolate transconjugant 2(L-II), complete genome 58645-58676 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NC_031129 Salmonella phage SJ46, complete genome 77363-77394 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 MH445381 Escherichia virus P1, complete genome 56870-56901 0 1.0
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_KP453775 Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence 17440-17471 2 0.938
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP017632 Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence 122310-122341 2 0.938
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP030285 Escherichia coli strain E308 plasmid pLKSZ04, complete sequence 6029-6060 2 0.938
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 NZ_CP036204 Escherichia coli strain L725 plasmid punnamed2, complete sequence 15121-15152 2 0.938
NZ_CP019903_3 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859307-4859338 32 MN510446 Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence 131402-131433 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP032392 Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence 28190-28221 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP022965 Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence 29440-29471 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NC_007208 Salmonella enterica OU7025 plasmid pOU1113, complete sequence 19749-19780 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_HG970001 Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence 38393-38424 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP032386 Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence 3653-3684 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP032388 Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence 42554-42585 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP030208 Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence 4890-4921 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP032450 Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence 68762-68793 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NC_011204 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence 31020-31051 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NC_019106 Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence 75580-75611 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NC_019112 Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence 20322-20353 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP012348 Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence 42630-42661 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP019180 Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence 59477-59508 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP032394 Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence 17037-17068 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NC_010422 Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence 19784-19815 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP032381 Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence 47366-47397 2 0.938
NZ_CP019903_3 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859551-4859582 32 NZ_CP032447 Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence 58031-58062 2 0.938
NZ_CP019903_3 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859673-4859704 32 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 213346-213377 6 0.812
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_CP022140 Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence 27735-27766 6 0.812
NZ_CP019903_3 3.12|4859978|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859978-4860009 32 NZ_CP015205 Rhodococcus sp. 008 plasmid pR8C2, complete sequence 47221-47252 7 0.781
NZ_CP019903_3 3.12|4859978|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859978-4860009 32 NZ_CP025960 Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence 25136-25167 7 0.781
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 12111-12158 8 0.833
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 424237-424284 8 0.833
NZ_CP019903_3 3.4|4859490|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859490-4859521 32 NZ_CP042263 Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence 173595-173626 8 0.75
NZ_CP019903_3 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859673-4859704 32 NZ_CP032347 Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence 495160-495191 8 0.75
NZ_CP019903_3 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859673-4859704 32 NZ_CP041042 Paracoccus sp. AK26 plasmid pAK4, complete sequence 80163-80194 8 0.75
NZ_CP019903_3 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859673-4859704 32 NZ_CP035513 Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence 265218-265249 8 0.75
NZ_CP019903_3 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859673-4859704 32 NZ_CP021819 Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence 503132-503163 8 0.75
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_KP453775 Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence 70246-70277 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_LT904880 Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3 100861-100892 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_LT904895 Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2 32455-32486 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP012254 Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence 90639-90670 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029647 Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence 24048-24079 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_LT904853 Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2 2158-2189 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NC_003385 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence 69550-69581 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029859 Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence 33422-33453 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029847 Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence 64890-64921 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029916 Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence 3001-3032 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029893 Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence 30210-30241 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029876 Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence 21803-21834 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029884 Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence 5429-5460 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029961 Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence 76887-76918 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029849 Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence 9632-9663 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029857 Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence 17697-17728 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029929 Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence 73527-73558 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029865 Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence 87633-87664 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_LT883154 Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2 32810-32841 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029905 Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence 30728-30759 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029851 Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence 44207-44238 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP040567 Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence 17468-17499 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029889 Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence 17968-17999 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029891 Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence 18575-18606 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029898 Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence 21136-21167 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029951 Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence 47286-47317 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029867 Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence 33258-33289 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029901 Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence 32901-32932 8 0.75
NZ_CP019903_4 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT 4887362-4887393 32 NZ_CP029921 Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence 100446-100477 8 0.75
NZ_CP019903_4 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR 4887667-4887698 32 MK448716 Streptococcus phage Javan249, complete genome 37558-37589 8 0.75
NZ_CP019903_3 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859673-4859704 32 NC_019846 Sinorhizobium meliloti GR4 plasmid pRmeGR4a, complete sequence 170029-170060 9 0.719
NZ_CP019903_3 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859673-4859704 32 NZ_CP021826 Sinorhizobium meliloti strain KH35c plasmid accessoryA, complete sequence 70339-70370 9 0.719
NZ_CP019903_3 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859673-4859704 32 MG757153 Streptomyces phage BillNye, complete genome 85146-85177 9 0.719
NZ_CP019903_3 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859673-4859704 32 MK620896 Streptomyces phage Circinus, complete genome 85114-85145 9 0.719
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_CP011404 Lactobacillus salivarius str. Ren plasmid pR1, complete sequence 100759-100790 9 0.719
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_CP020859 Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence 48192-48223 9 0.719
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_CP020859 Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence 248214-248245 9 0.719
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_CP017108 Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence 140326-140357 9 0.719
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_CP017110 Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence 20889-20920 9 0.719
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_CP029460 Clostridium novyi strain 150557 plasmid pCN2, complete sequence 45232-45263 9 0.719
NZ_CP019903_4 4.2|4887240|32|NZ_CP019903|CRISPRCasFinder,CRT 4887240-4887271 32 NZ_CP021994 Cryobacterium sp. LW097 plasmid unnamed1 33387-33418 9 0.719
NZ_CP019903_4 4.3|4887301|32|NZ_CP019903|CRISPRCasFinder,CRT 4887301-4887332 32 AP014399 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces 35411-35442 9 0.719
NZ_CP019903_4 4.3|4887301|32|NZ_CP019903|CRISPRCasFinder,CRT 4887301-4887332 32 AP013383 Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13 29583-29614 9 0.719
NZ_CP019903_4 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR 4887667-4887698 32 NZ_CP044347 Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence 121862-121893 9 0.719
NZ_CP019903_4 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR 4887667-4887698 32 NZ_CP032533 Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence 17401-17432 9 0.719
NZ_CP019903_4 4.11|4887241|32|NZ_CP019903|PILER-CR 4887241-4887272 32 NZ_CP021994 Cryobacterium sp. LW097 plasmid unnamed1 33387-33418 9 0.719
NZ_CP019903_4 4.12|4887302|32|NZ_CP019903|PILER-CR 4887302-4887333 32 AP014399 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces 35411-35442 9 0.719
NZ_CP019903_4 4.12|4887302|32|NZ_CP019903|PILER-CR 4887302-4887333 32 AP013383 Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13 29583-29614 9 0.719
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7391-7438 10 0.792
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84215-84262 10 0.792
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87125-87172 10 0.792
NZ_CP019903_3 3.11|4859917|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859917-4859948 32 NZ_CP031468 Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence 166221-166252 10 0.688
NZ_CP019903_3 3.11|4859917|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4859917-4859948 32 NZ_CP014580 Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence 2849-2880 10 0.688
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NC_018511 Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence 60-91 10 0.688
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NC_001446 Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence 4548-4579 10 0.688
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_CP009345 Bacillus thuringiensis HD1002 plasmid 6, complete sequence 1165-1196 10 0.688
NZ_CP019903_3 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT 4860039-4860070 32 NZ_CP053657 Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence 105460-105491 10 0.688
NZ_CP019903_4 4.1|4887179|32|NZ_CP019903|CRISPRCasFinder,CRT 4887179-4887210 32 NZ_CP024940 Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence 1163456-1163487 10 0.688
NZ_CP019903_4 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR 4887667-4887698 32 NZ_CP045561 Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence 141094-141125 10 0.688
NZ_CP019903_4 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR 4887667-4887698 32 NZ_CP014478 Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence 140150-140181 10 0.688
NZ_CP019903_4 4.10|4887180|32|NZ_CP019903|PILER-CR 4887180-4887211 32 NZ_CP024940 Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence 1163456-1163487 10 0.688
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229237-229284 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229338-229385 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229439-229486 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239731-239778 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239832-239879 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239933-239980 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 15006-15053 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230643-230690 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230744-230791 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230845-230892 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211613-211660 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211714-211761 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211815-211862 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31250-31297 11 0.771
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 3371-3418 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4012-4059 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4113-4160 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 208980-209027 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 3370-3417 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4011-4058 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4112-4159 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 219474-219521 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 3370-3417 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4011-4058 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4112-4159 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 210308-210355 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 3370-3417 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4011-4058 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4112-4159 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 191263-191310 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 270-317 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 101195-101242 12 0.75
NZ_CP019903_2 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder 2672422-2672469 48 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 158-205 13 0.729

1. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

2. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

3. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

4. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

5. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

6. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

7. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

8. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

9. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

10. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

11. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

12. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

13. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

14. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

15. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

16. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

17. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

18. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

19. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

20. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

21. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

22. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

23. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

24. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaccgtgtttttacc	Protospacer
********************************

25. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaacgtgttttcacc	Protospacer
******************* ********.***

26. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcagaacgtgttttcacc	Protospacer
******************* ********.***

27. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgacggtttagaccgtgtttttacc	Protospacer
********* *****.****************

28. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgacggtttagaccgtgtttttacc	Protospacer
********* *****.****************

29. spacer 3.1|4859307|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938 

acatgaatgtcggttcagaccgtgtttttacc	CRISPR spacer
acatgaatgtcggttcataacgtgtttttacc	Protospacer
***************** * ************

30. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032392 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

31. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022965 (Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

32. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_007208 (Salmonella enterica OU7025 plasmid pOU1113, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

33. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG970001 (Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

34. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032386 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

35. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032388 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

36. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030208 (Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

37. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032450 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

38. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_011204 (Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

39. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_019106 (Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

40. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_019112 (Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

41. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012348 (Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

42. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019180 (Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

43. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032394 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

44. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_010422 (Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

45. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032381 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

46. spacer 3.5|4859551|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032447 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence) position: , mismatch: 2, identity: 0.938 

tttctaggaaacgacgttatttgctcatccca	CRISPR spacer
tttctaggaaaagacgttattcgctcatccca	Protospacer
*********** *********.**********

47. spacer 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.812 

-tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
atacct-ggcggcggctctgcgcgagcgcggca	Protospacer
 *.*** ****************.* ****. *

48. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812 

caaaaaataaaataaaggcaatgt-tttcaatg	CRISPR spacer
gaaaaaataaaatagagggaatgtgatttaat-	Protospacer
 *************.*** *****  **.***

49. spacer 3.12|4859978|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015205 (Rhodococcus sp. 008 plasmid pR8C2, complete sequence) position: , mismatch: 7, identity: 0.781 

gcggaaacagcttcctggatgctgcgttattg	CRISPR spacer
gtggaaacagcttcttcgatgctgcgctcgcg	Protospacer
*.************.* *********.*  .*

50. spacer 3.12|4859978|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025960 (Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence) position: , mismatch: 7, identity: 0.781 

gcggaaacagcttcctggatgctgcgttattg	CRISPR spacer
gtggaaacagcttcttcgatgctgcgctcgcg	Protospacer
*.************.* *********.*  .*

51. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.833 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* ****************   *.*

52. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.833 

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggcaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *********  . .

53. spacer 3.4|4859490|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75 

aacaggccgtatgaggatcactggcacggcgg	CRISPR spacer
cacaggctgtatgacgatcactggctgcaccg	Protospacer
 ******.****** **********   .* *

54. spacer 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75 

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
cgcctcggcggcgggtccgcgcaactcggcca	Protospacer
.************* **.*******.  *  *

55. spacer 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041042 (Paracoccus sp. AK26 plasmid pAK4, complete sequence) position: , mismatch: 8, identity: 0.75 

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
ggcggcggcggcggcgctgcgcgaccgcgcgc	Protospacer
 **  ********** ******.****** .

56. spacer 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035513 (Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence) position: , mismatch: 8, identity: 0.75 

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
tgcctcggcggcggctccgcccagctctgcat	Protospacer
*****************.** **.*. .* *

57. spacer 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.75 

tgcctcggcggcggctctgcgcaa-----ccgcgaaa	CRISPR spacer
cgccacggcggcagctctgcgcaagtcagccg-----	Protospacer
.*** *******.***********     ***

58. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 8, identity: 0.75 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
taaaaaattaaataaagccaatgttttagcga	Protospacer
.******* ******** ********* .  .

59. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_LT904880 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

60. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_LT904895 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

61. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP012254 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
tgataacgctacacagacttataacaatcatt	Protospacer
.*.  **  ********.***** ********

62. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029647 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

63. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_LT904853 (Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

64. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NC_003385 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

65. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029859 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

66. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029847 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

67. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029916 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

68. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029893 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

69. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029876 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

70. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029884 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

71. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029961 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

72. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029849 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

73. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029857 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

74. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029929 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

75. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029865 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

76. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_LT883154 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

77. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029905 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

78. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029851 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

79. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP040567 (Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

80. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029889 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

81. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029891 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

82. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029898 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

83. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029951 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

84. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029867 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

85. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029901 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

86. spacer 4.4|4887362|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP029921 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75 

cggacaccgtacacagatttatatcaatcatt	CRISPR spacer
caacaacgctacacagacttataacaatcatt	Protospacer
*..  **  ********.***** ********

87. spacer 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR matches to MK448716 (Streptococcus phage Javan249, complete genome) position: , mismatch: 8, identity: 0.75 

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
aactataatcttttgctgtcgttttgttatta	Protospacer
. * ***** *********.*********.

88. spacer 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_019846 (Sinorhizobium meliloti GR4 plasmid pRmeGR4a, complete sequence) position: , mismatch: 9, identity: 0.719 

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
tgcctcggcgggggctatgcgcaccgggcccg	Protospacer
*********** **** ****** * *    .

89. spacer 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021826 (Sinorhizobium meliloti strain KH35c plasmid accessoryA, complete sequence) position: , mismatch: 9, identity: 0.719 

tgcctcggcggcggctctgcgcaaccgcgaaa	CRISPR spacer
tgcctcggcgggggctatgcgcaccgggcccg	Protospacer
*********** **** ****** * *    .

90. spacer 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to MG757153 (Streptomyces phage BillNye, complete genome) position: , mismatch: 9, identity: 0.719 

tgcctcggcggcggctctgcgcaaccgcgaaa----	CRISPR spacer
tgactcggcggcggctatgcgca----cagagttgc	Protospacer
** ************* ******    *..*.

91. spacer 3.7|4859673|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to MK620896 (Streptomyces phage Circinus, complete genome) position: , mismatch: 9, identity: 0.719 

tgcctcggcggcggctctgcgcaaccgcgaaa----	CRISPR spacer
tgactcggcggcggctatgcgca----cagagttgc	Protospacer
** ************* ******    *..*.

92. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.719 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

93. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

94. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

95. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

96. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017110 (Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence) position: , mismatch: 9, identity: 0.719 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaataataaaattaaggcaatgtttattaaa	Protospacer
. ** ******** ************ . * .

97. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 9, identity: 0.719 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
ttaaaaataaaataaatacaatgttctttttt	Protospacer
. ************** .*******.*.  *

98. spacer 4.2|4887240|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719 

gcaaaacctgtcgatcttgatactggtcgctc	CRISPR spacer
tgaggtctggtcgatcttgctgctggtcgctc	Protospacer
  *.. *. ********** *.**********

99. spacer 4.3|4887301|32|NZ_CP019903|CRISPRCasFinder,CRT matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719 

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

100. spacer 4.3|4887301|32|NZ_CP019903|CRISPRCasFinder,CRT matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719 

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

101. spacer 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044347 (Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence) position: , mismatch: 9, identity: 0.719 

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
atgcataatatttcgctcttgttttgttctta	Protospacer
.*  *********.*** ********** .

102. spacer 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032533 (Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence) position: , mismatch: 9, identity: 0.719 

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
tctcaccatattttactgtttttttgttacat	Protospacer
 .. *. *******.***** *********.*

103. spacer 4.11|4887241|32|NZ_CP019903|PILER-CR matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719 

gcaaaacctgtcgatcttgatactggtcgctc	CRISPR spacer
tgaggtctggtcgatcttgctgctggtcgctc	Protospacer
  *.. *. ********** *.**********

104. spacer 4.12|4887302|32|NZ_CP019903|PILER-CR matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719 

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

105. spacer 4.12|4887302|32|NZ_CP019903|PILER-CR matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719 

ttgctgcaattttgtcttttaatttatcctag	CRISPR spacer
aatttgcaattatctcttttaatttatctgac	Protospacer
   .******* * **************. *

106. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.792 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

107. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.792 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

108. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.792 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  ****************    **

109. spacer 3.11|4859917|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031468 (Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688 

agtgagtatttcgcggacctcttcaccgatcg	CRISPR spacer
atctccgatttcgcggacgtcgtcaccgatta	Protospacer
* .    *********** ** ********..

110. spacer 3.11|4859917|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014580 (Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence) position: , mismatch: 10, identity: 0.688 

agtgagtatttcgcggacctcttcaccgatcg	CRISPR spacer
atctccgatttcgcggacgtcgtcaccgatta	Protospacer
* .    *********** ** ********..

111. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_018511 (Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence) position: , mismatch: 10, identity: 0.688 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
aaaaaaataaaataaaagaaatgtaagaacga	Protospacer
 ***************.* *****    *  .

112. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NC_001446 (Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence) position: , mismatch: 10, identity: 0.688 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
aaaaaaataaaataaaagaaatgtaagaacga	Protospacer
 ***************.* *****    *  .

113. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009345 (Bacillus thuringiensis HD1002 plasmid 6, complete sequence) position: , mismatch: 10, identity: 0.688 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
aaaaaaataaaataaaagaaatgtaagaacga	Protospacer
 ***************.* *****    *  .

114. spacer 3.13|4860039|32|NZ_CP019903|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 10, identity: 0.688 

caaaaaataaaataaaggcaatgttttcaatg	CRISPR spacer
atctaaataaaacaaaggaaatgttttaaggt	Protospacer
    ********.***** ******** *.

115. spacer 4.1|4887179|32|NZ_CP019903|CRISPRCasFinder,CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688 

tgcgtgatcccctcgctaacgtacatatcgat	CRISPR spacer
aggtcagtcccgtcgctaacgtaaatatcgcc	Protospacer
 *  ...**** *********** ****** .

116. spacer 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045561 (Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence) position: , mismatch: 10, identity: 0.688 

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
attttcaaaattttgctgttgtttttttatta	Protospacer
.*.  .** **************** ***.

117. spacer 4.9|4887667|32|NZ_CP019903|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014478 (Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence) position: , mismatch: 10, identity: 0.688 

gtcgataatattttgctgttgttttgttacgt	CRISPR spacer
attttcaaaattttgctgttgtttttttatta	Protospacer
.*.  .** **************** ***.

118. spacer 4.10|4887180|32|NZ_CP019903|PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688 

tgcgtgatcccctcgctaacgtacatatcgat	CRISPR spacer
aggtcagtcccgtcgctaacgtaaatatcgcc	Protospacer
 *  ...**** *********** ****** .

119. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

120. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

121. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

122. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

123. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

124. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

125. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* ****************  ..*.

126. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

127. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

128. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

129. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

130. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

131. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

132. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.771 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  ****************   * .

133. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

134. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

135. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

136. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

137. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

138. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

139. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

140. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

141. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

142. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

143. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

144. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

145. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

146. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

147. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

148. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

149. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  ****************   * .

150. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.75 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 **.   ****************** ***************.   *..

151. spacer 2.1|2672422|48|NZ_CP019903|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.729 

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. ***************    * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 107423 : 228015 109 Stx2-converting_phage(15.79%) integrase,protease,tRNA,transposase attL 137762:137776|attR 145565:145579
DBSCAN-SWA_2 933862 : 1016114 68 Escherichia_phage(22.73%) tRNA,integrase,transposase attL 929310:929324|attR 993465:993494
DBSCAN-SWA_3 1559214 : 1632646 60 Enterobacteria_phage(21.43%) tRNA,transposase NA
DBSCAN-SWA_4 2171157 : 2232957 57 Escherichia_phage(16.67%) integrase,transposase attL 2179812:2179871|attR 2224587:2225904
DBSCAN-SWA_5 2466555 : 2526316 51 Planktothrix_phage(10.0%) integrase,protease,tRNA,transposase attL 2492141:2492175|attR 2527204:2527238
DBSCAN-SWA_6 2716831 : 2766785 68 Enterobacteria_phage(56.36%) protease,terminase,lysis,integrase,capsid,tail,head,transposase,portal attL 2723196:2723213|attR 2777579:2777596
DBSCAN-SWA_7 2874149 : 2953243 58 Bacillus_phage(19.05%) protease,tRNA,transposase NA
DBSCAN-SWA_8 3144806 : 3213778 86 Shigella_phage(43.64%) protease,terminase,integrase,lysis,capsid,tail,plate,tRNA,transposase,holin,head,portal attL 3149397:3149456|attR 3213731:3215265
DBSCAN-SWA_9 3575434 : 3629481 63 Enterobacteria_phage(45.65%) protease,terminase,lysis,integrase,tail,transposase,portal attL 3601077:3601093|attR 3633010:3633026
DBSCAN-SWA_10 4095391 : 4101697 6 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_11 4186797 : 4196239 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_12 4402410 : 4480213 90 Enterobacteria_phage(73.21%) terminase,integrase,plate,capsid,tail,tRNA,transposase,head,holin,portal attL 4470626:4470648|attR 4480348:4480370
DBSCAN-SWA_13 4754640 : 4766053 12 Enterobacteria_phage(70.0%) integrase attL 4748936:4748949|attR 4765778:4765791
DBSCAN-SWA_14 4835783 : 4842923 6 Escherichia_phage(83.33%) NA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage