Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019721 Veillonella parvula strain UTDB1-3 chromosome, complete genome 10 crisprs DEDDh,csa3,cas6,csm3gr7,csx19,csx10gr5,cas10,csx20,cas1,cas2,csx1,cas3 3 2 6 2

Results visualization

1. NZ_CP019721
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_1 309077-309182 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_2 512612-512734 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_3 531403-532136 TypeIII NA
9 spacers
cas6,csm3gr7,csx19,csx10gr5

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_4 532384-533286 TypeIII NA
12 spacers
cas6,csm3gr7,csx19,csx10gr5

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_5 549989-551458 TypeIII NA
19 spacers
cas2,cas1,csx20,cas10,csm3gr7,csx10gr5,csx19,csx1,cas6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_6 552738-554211 TypeIII NA
19 spacers
cas2,cas1,csx20,cas10,csm3gr7,csx10gr5,csx19,csx1,cas6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_7 562598-563513 TypeIII NA
12 spacers
csx1,cas2,cas1,csx20,cas10,csm3gr7,cas6,csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_8 564911-566267 TypeI NA
17 spacers
cas6,csx1,cas2,cas1,csx20,cas10,csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_9 1180195-1180304 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019721_10 1184253-1184360 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019721_3 3.4|531672|41|NZ_CP019721|CRT 531672-531712 41 NZ_CP019721.1 1072160-1072200 0 1.0
NZ_CP019721_7 7.5|562923|41|NZ_CP019721|CRT,CRISPRCasFinder,PILER-CR 562923-562963 41 NZ_CP019721.1 320339-320379 2 0.951
NZ_CP019721_6 6.5|553066|87|NZ_CP019721|CRISPRCasFinder 553066-553152 87 NZ_CP019721.1 552651-552737 27 0.69

1. spacer 3.4|531672|41|NZ_CP019721|CRT matches to position: 1072160-1072200, mismatch: 0, identity: 1.0

taatcaagcacgtaattacgtaccaaacctaacgtaattat	CRISPR spacer
taatcaagcacgtaattacgtaccaaacctaacgtaattat	Protospacer
*****************************************

2. spacer 7.5|562923|41|NZ_CP019721|CRT,CRISPRCasFinder,PILER-CR matches to position: 320339-320379, mismatch: 2, identity: 0.951

aaaaaactaattgatgcgtggagctggctcaactccgataa	CRISPR spacer
aaaaaactaattgatgcgtggagttggctcaactccgacaa	Protospacer
***********************.**************.**

3. spacer 6.5|553066|87|NZ_CP019721|CRISPRCasFinder matches to position: 552651-552737, mismatch: 27, identity: 0.69

tcaccttcgttttaccttcacttcgttcaggtacttgagatgtgcggacctcatcgtcgc	CRISPR spacer
tcaccttcgttttaccttcacttcgttcaggtacttgagatgtgcggacctcatcgtcgc	Protospacer
************************************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019721_5 5.13|550951|36|NZ_CP019721|CRISPRCasFinder,CRT,PILER-CR 550951-550986 36 NZ_CP020607 Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd3, complete sequence 2112-2147 8 0.778
NZ_CP019721_5 5.17|551239|36|NZ_CP019721|CRISPRCasFinder,CRT,PILER-CR 551239-551274 36 MN694456 Marine virus AFVG_250M1118, complete genome 49079-49114 10 0.722
NZ_CP019721_5 5.17|551239|36|NZ_CP019721|CRISPRCasFinder,CRT,PILER-CR 551239-551274 36 AP013539 Uncultured phage_MedDCM-OCT-S28-C3 DNA, complete genome, group G7, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C3 13121-13156 15 0.583

1. spacer 5.13|550951|36|NZ_CP019721|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020607 (Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 plasmid pLd3, complete sequence) position: , mismatch: 8, identity: 0.778

atgaacaaaaagatcgaaaagatgactttagatttt	CRISPR spacer
atgaacaaaaatatcgaaaatatgaccctaaaaatg	Protospacer
*********** ******** *****..**.*  * 

2. spacer 5.17|551239|36|NZ_CP019721|CRISPRCasFinder,CRT,PILER-CR matches to MN694456 (Marine virus AFVG_250M1118, complete genome) position: , mismatch: 10, identity: 0.722

cctcatttaattaattaaaattattttattttggca	CRISPR spacer
atttatttaattaattaaaatagttttattaattaa	Protospacer
 .*.***************** .*******     *

3. spacer 5.17|551239|36|NZ_CP019721|CRISPRCasFinder,CRT,PILER-CR matches to AP013539 (Uncultured phage_MedDCM-OCT-S28-C3 DNA, complete genome, group G7, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C3) position: , mismatch: 15, identity: 0.583

cctcatttaattaattaaaattattttattttggca-------	CRISPR spacer
-------aaatttaataaaattattttaattaatgaaattaat	Protospacer
        **** * ************* ** .  *       

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 323512 : 342708 18 Synechococcus_phage(23.08%) terminase,head,portal NA
DBSCAN-SWA_2 1045906 : 1051895 6 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 1063084 : 1139493 102 Bacteriophage(25.0%) terminase,tRNA,plate,tail,capsid,protease,integrase,portal attL 1063069:1063087|attR 1101978:1101996
DBSCAN-SWA_4 1802518 : 1810782 8 uncultured_virus(33.33%) tRNA NA
DBSCAN-SWA_5 1974848 : 1985379 10 uncultured_phage(42.86%) NA NA
DBSCAN-SWA_6 2043625 : 2053096 7 Klosneuvirus(16.67%) tRNA,protease NA
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP019721.1|WP_077708127.1|1068129_1068390_+|hypothetical-protein 1068129_1068390_+ 86 aa aa NA NA NA 1063084-1139493 yes
NZ_CP019721.1|WP_077708128.1|1068376_1068949_-|hypothetical-protein 1068376_1068949_- 190 aa aa NA NA NA 1063084-1139493 yes