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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019596 Bifidobacterium breve strain LMC520 chromosome, complete genome 5 crisprs DEDDh,cas3,WYL 1 1 2 0

Results visualization

1. NZ_CP019596
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019596_1 152362-152698 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019596_2 375831-375909 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019596_3 382817-382991 Orphan NA
2 spacers
RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019596_4 2133032-2133178 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019596_5 2261361-2261445 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019596_4 4.2|2133118|36|NZ_CP019596|CRISPRCasFinder 2133118-2133153 36 NZ_CP019596.1 2134455-2134490 1 0.972

1. spacer 4.2|2133118|36|NZ_CP019596|CRISPRCasFinder matches to position: 2134455-2134490, mismatch: 1, identity: 0.972

actcacttagcgacagtaatttaggacgactgggat	CRISPR spacer
actcacttagcgacagaaatttaggacgactgggat	Protospacer
**************** *******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019596_3 3.1|382860|31|NZ_CP019596|PILER-CR 382860-382890 31 NZ_AP022338 Mameliella alba strain KU6B plasmid pKUB257, complete sequence 221651-221681 8 0.742
NZ_CP019596_3 3.1|382860|31|NZ_CP019596|PILER-CR 382860-382890 31 NZ_CP015038 Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence 166502-166532 9 0.71

1. spacer 3.1|382860|31|NZ_CP019596|PILER-CR matches to NZ_AP022338 (Mameliella alba strain KU6B plasmid pKUB257, complete sequence) position: , mismatch: 8, identity: 0.742

acgcggtcaggtccgtcgcatccgccatctg	CRISPR spacer
cacccatcaggaccgtggcatccgccatctc	Protospacer
   * .***** **** ************* 

2. spacer 3.1|382860|31|NZ_CP019596|PILER-CR matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 9, identity: 0.71

acgcggtcaggtccgtcgcatccgccatctg	CRISPR spacer
ggtcggtcaggtccgccgcatacgccgggtt	Protospacer
.  ************.***** ****.  * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 347256 : 396653 60 Bifidobacterium_phage(20.83%) tail,integrase,capsid,terminase,tRNA,holin,portal attL 391469:391483|attR 396673:396687
DBSCAN-SWA_2 1213868 : 1221125 10 Bifidobacterium_phage(71.43%) portal,coat NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage