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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019573 Auricoccus indicus strain S31 chromosome, complete genome 1 crisprs DinG,cas3,DEDDh,csa3 1 0 132 1

Results visualization

1. NZ_CP019573
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019573_1 1362612-1362685 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP019573_1 1.1|1362635|28|NZ_CP019573|CRISPRCasFinder 1362635-1362662 28 NZ_CP019573.1 1362584-1362611 2 0.929

1. spacer 1.1|1362635|28|NZ_CP019573|CRISPRCasFinder matches to position: 1362584-1362611, mismatch: 2, identity: 0.929

ctctccatctaaatttctgcggaatata	CRISPR spacer
ctcgccatcaaaatttctgcggaatata	Protospacer
*** ***** ******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 4227 3 Bacteriophage(100.0%) NA NA
DBSCAN-SWA_2 8216 : 13646 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_3 22850 : 23867 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_4 28211 : 29828 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_5 38503 : 39517 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_6 44489 : 54875 10 Synechococcus_phage(20.0%) NA NA
DBSCAN-SWA_7 61884 : 68438 9 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_8 84262 : 89440 7 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_9 105016 : 106357 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_10 117218 : 133779 22 Klosneuvirus(28.57%) transposase,tRNA NA
DBSCAN-SWA_11 137462 : 140421 3 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_12 160782 : 163720 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_13 172174 : 175336 4 Klebsiella_phage(50.0%) NA NA
DBSCAN-SWA_14 190676 : 191975 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_15 200716 : 205456 4 Salmonella_phage(33.33%) NA NA
DBSCAN-SWA_16 215913 : 226298 11 Staphylococcus_phage(20.0%) NA NA
DBSCAN-SWA_17 230547 : 238795 10 Mycoplasma_phage(25.0%) NA NA
DBSCAN-SWA_18 249762 : 254483 4 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_19 274966 : 276481 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_20 279583 : 287879 9 Yellowstone_lake_mimivirus(25.0%) NA NA
DBSCAN-SWA_21 295584 : 297990 2 Moraxella_phage(50.0%) tRNA NA
DBSCAN-SWA_22 302655 : 304572 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_23 318698 : 325906 7 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_24 330834 : 331686 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_25 338211 : 338955 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_26 345166 : 346138 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_27 350830 : 351229 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_28 354733 : 369021 13 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_29 378839 : 385721 5 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_30 389369 : 390440 1 Morganella_phage(100.0%) NA NA
DBSCAN-SWA_31 396540 : 397902 1 Streptococcus_phi-m46.1-like_phage(100.0%) NA NA
DBSCAN-SWA_32 402555 : 405980 3 Aeropyrum_pernix_spindle-shaped_virus(50.0%) NA NA
DBSCAN-SWA_33 434529 : 435714 1 Listeria_phage(100.0%) NA NA
DBSCAN-SWA_34 441950 : 443212 2 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_35 447113 : 453334 5 Tupanvirus(33.33%) transposase NA
DBSCAN-SWA_36 462311 : 465527 1 Phage_Wrath(100.0%) NA NA
DBSCAN-SWA_37 474654 : 477729 2 Gordonia_phage(50.0%) NA NA
DBSCAN-SWA_38 484035 : 489070 4 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_39 497209 : 519775 23 Synechococcus_phage(25.0%) transposase NA
DBSCAN-SWA_40 530657 : 538361 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_41 543862 : 545701 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_42 558604 : 573352 13 Staphylococcus_phage(20.0%) tRNA NA
DBSCAN-SWA_43 583819 : 587298 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_44 591858 : 623095 22 Bacillus_phage(28.57%) tRNA NA
DBSCAN-SWA_45 627136 : 629058 2 Phage_TP(50.0%) NA NA
DBSCAN-SWA_46 637562 : 644068 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_47 647437 : 650543 2 Chrysochromulina_ericina_virus(50.0%) NA NA
DBSCAN-SWA_48 657070 : 658015 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_49 666085 : 671943 4 Orpheovirus(33.33%) tRNA NA
DBSCAN-SWA_50 676040 : 679128 3 Cafeteria_roenbergensis_virus(33.33%) NA NA
DBSCAN-SWA_51 682506 : 683112 1 Bacillus_thuringiensis_phage(100.0%) NA NA
DBSCAN-SWA_52 689108 : 689972 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_53 694982 : 695621 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_54 701860 : 704663 2 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_55 707921 : 708980 1 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_56 712374 : 713724 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_57 718517 : 719237 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_58 724729 : 729686 4 Brevibacillus_phage(33.33%) NA NA
DBSCAN-SWA_59 732799 : 736934 6 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_60 741258 : 748298 6 Bacillus_phage(75.0%) NA NA
DBSCAN-SWA_61 755770 : 760310 6 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_62 770778 : 778508 5 unidentified_phage(33.33%) tRNA NA
DBSCAN-SWA_63 783392 : 783977 1 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_64 794578 : 800799 9 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_65 804845 : 806419 2 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_66 810240 : 815839 5 Moraxella_phage(50.0%) NA NA
DBSCAN-SWA_67 821370 : 822150 1 Lake_Baikal_phage(100.0%) NA NA
DBSCAN-SWA_68 825443 : 832961 8 Escherichia_phage(25.0%) lysis NA
DBSCAN-SWA_69 838031 : 841805 3 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_70 846671 : 855660 5 Bacillus_virus(66.67%) NA NA
DBSCAN-SWA_71 864500 : 865649 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_72 870774 : 876645 3 Liberibacter_phage(50.0%) NA NA
DBSCAN-SWA_73 880132 : 882776 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_74 898050 : 904630 4 Acanthocystis_turfacea_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_75 907718 : 909128 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_76 916115 : 917171 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_77 920597 : 925946 3 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_78 933128 : 943971 7 Bodo_saltans_virus(33.33%) tRNA NA
DBSCAN-SWA_79 947401 : 948142 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_80 952499 : 963174 9 Bacillus_phage(20.0%) tRNA NA
DBSCAN-SWA_81 973160 : 974327 1 uncultured_phage(100.0%) NA NA
DBSCAN-SWA_82 977935 : 979808 3 Acanthamoeba_polyphaga_moumouvirus(33.33%) NA NA
DBSCAN-SWA_83 983225 : 985268 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_84 993668 : 996041 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_85 999182 : 1004681 5 Prochlorococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_86 1013676 : 1120829 115 Staphylococcus_phage(26.09%) tRNA,portal,integrase,tail,protease,terminase,capsid,head attL 1056546:1056564|attR 1094031:1094049
DBSCAN-SWA_87 1124599 : 1135729 8 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_88 1139219 : 1143215 2 Streptomyces_phage(50.0%) NA NA
DBSCAN-SWA_89 1154011 : 1155157 1 unidentified_phage(100.0%) NA NA
DBSCAN-SWA_90 1161959 : 1167101 3 Cronobacter_phage(50.0%) tRNA NA
DBSCAN-SWA_91 1173516 : 1174326 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_92 1184048 : 1199870 16 Staphylococcus_phage(87.5%) tRNA NA
DBSCAN-SWA_93 1204739 : 1212458 7 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_94 1224126 : 1228053 3 Erysipelothrix_phage(50.0%) NA NA
DBSCAN-SWA_95 1232528 : 1234373 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_96 1253375 : 1255513 2 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_97 1264477 : 1274385 8 Escherichia_phage(33.33%) NA NA
DBSCAN-SWA_98 1277566 : 1281160 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_99 1288578 : 1293259 6 Klosneuvirus(50.0%) NA NA
DBSCAN-SWA_100 1299345 : 1311995 15 Streptococcus_phage(16.67%) NA NA
DBSCAN-SWA_101 1323591 : 1351138 31 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_102 1354960 : 1364051 7 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_103 1372485 : 1377937 6 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_104 1381790 : 1389370 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_105 1395465 : 1403073 7 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_106 1410151 : 1428550 18 uncultured_Caudovirales_phage(41.67%) NA NA
DBSCAN-SWA_107 1432628 : 1447381 11 Acinetobacter_phage(16.67%) NA NA
DBSCAN-SWA_108 1453452 : 1456695 4 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_109 1461946 : 1462852 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_110 1471709 : 1475179 2 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_111 1478686 : 1479595 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_112 1488691 : 1489597 1 Rhodococcus_phage(100.0%) NA NA
DBSCAN-SWA_113 1495522 : 1501562 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_114 1507248 : 1509291 2 Megavirus(50.0%) NA NA
DBSCAN-SWA_115 1512807 : 1514526 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_116 1517835 : 1519347 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_117 1522774 : 1523446 1 Fruit_bat_alphaherpesvirus(100.0%) NA NA
DBSCAN-SWA_118 1527902 : 1528562 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_119 1540286 : 1557489 11 Bacillus_virus(16.67%) NA NA
DBSCAN-SWA_120 1560836 : 1565569 8 Synechococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_121 1592494 : 1594921 1 Cronobacter_phage(100.0%) protease NA
DBSCAN-SWA_122 1598296 : 1601300 3 Staphylococcus_phage(66.67%) transposase NA
DBSCAN-SWA_123 1609718 : 1614260 4 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_124 1622426 : 1644361 23 Streptococcus_phage(27.27%) protease,tRNA NA
DBSCAN-SWA_125 1654701 : 1655673 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_126 1662034 : 1665526 3 Klosneuvirus(33.33%) tRNA NA
DBSCAN-SWA_127 1668980 : 1669607 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_128 1677106 : 1678768 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_129 1689321 : 1693253 5 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_130 1697221 : 1718866 26 Staphylococcus_phage(33.33%) integrase attL 1697080:1697098|attR 1707549:1707567
DBSCAN-SWA_131 1725793 : 1736927 8 Bacillus_virus(40.0%) tRNA NA
DBSCAN-SWA_132 1740437 : 1745262 4 Streptococcus_phage(50.0%) NA NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP019573.1|WP_077140751.1|1358547_1359018_-|SsrA-binding-protein-SmpB 1358547_1359018_- 156 aa aa NA NA NA 1354960-1364051 yes