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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013887 Bordetella pertussis strain J103 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. NZ_CP013887
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013887_1 250591-250675 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013887_2 432034-432127 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013887_3 996351-996445 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013887_4 1820847-1820974 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013887_5 3432470-3432579 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 78584 49 Synechococcus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_2 107426 : 175252 56 Bacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_3 178634 : 236271 48 Klosneuvirus(14.29%) tRNA,protease,transposase NA
DBSCAN-SWA_4 250685 : 303021 48 Bacillus_phage(25.0%) tRNA,protease,transposase NA
DBSCAN-SWA_5 390857 : 448366 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589370 : 650561 55 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 655885 : 702076 50 uncultured_Caudovirales_phage(18.18%) tRNA,transposase,tail,terminase NA
DBSCAN-SWA_8 708242 : 762172 46 Planktothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_9 853050 : 913926 51 Vibrio_phage(25.0%) transposase NA
DBSCAN-SWA_10 934673 : 998266 58 Bacillus_virus(15.38%) transposase NA
DBSCAN-SWA_11 1024378 : 1082463 51 uncultured_Mediterranean_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_12 1086509 : 1159574 57 Planktothrix_phage(18.18%) tRNA,holin,transposase NA
DBSCAN-SWA_13 1177361 : 1237247 44 Bacillus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_14 1293757 : 1339487 44 Salmonella_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_15 1419164 : 1471317 45 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_16 1515242 : 1583328 59 Streptococcus_virus(11.11%) tRNA,transposase NA
DBSCAN-SWA_17 1619277 : 1674868 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_18 1832633 : 1891903 51 Klosneuvirus(40.0%) tRNA,protease,transposase NA
DBSCAN-SWA_19 1902143 : 1946466 44 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_20 1976239 : 2040608 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_21 2172137 : 2229416 49 Synechococcus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_22 2576520 : 2643020 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_23 2671135 : 2708547 37 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_24 2807674 : 2862191 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_25 2870216 : 2927002 40 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_26 2957388 : 3001079 40 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_27 3091688 : 3153524 60 Clostridium_phage(14.29%) tRNA,protease,transposase NA
DBSCAN-SWA_28 3382072 : 3435813 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_29 3441968 : 3501266 48 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_30 3516204 : 3574276 46 Planktothrix_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_31 4006487 : 4071399 59 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage