CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014201	Lactobacillus rhamnosus strain BFE5264 chromosome, complete genome	9 crisprs	DinG,DEDDh,PrimPol,RT,csa3,csn2,cas2,cas1,cas9,cas14j,WYL,cas3	8	30	12	2
NZ_CP014202	Lactobacillus rhamnosus strain BFE5264 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014201_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014201_1

73087-73188

Orphan

Consensus_repeat	Method
GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014201_1

>merge|NZ_CP014201|1|73087-73188|CRISPRCasFinder
GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCCTTAGCTATGGCTACGTTAGCCGCACGGAGCGGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC

>NZ_CP014201|1|1|73087-73188|CRISPRCasFinder
GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC	TTAGCTATGGCTACGTTAGCCGCACGGAGC
GGTATAATGAAGTTGGAGATTGGAAGGGTTTTACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014201.1\|WP_005684490.1\|78756_79644_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088
NZ_CP014201.1\|WP_005688668.1\|64051_64987_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NZ_CP014201.1\|WP_014569359.1\|79721_79859_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_014569361.1\|81705_83373_+\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NZ_CP014201.1\|WP_005684496.1\|83462_84329_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	unknown	unknown	gnl\|CDD\|273991
NZ_CP014201.1\|WP_005688187.1\|67087_68140_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP014201.1\|WP_014569349.1\|61944_63237_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP014201.1\|WP_005684479.1\|68764_70336_+\|ribonuclease-Y	unknown	unknown	gnl\|CDD\|237177
NZ_CP014201.1\|WP_014569350.1\|63236_63965_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235506
NZ_CP014201.1\|WP_014569356.1\|71108_72374_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226583
NZ_CP014201.1\|WP_014569360.1\|79914_81012_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP014201.1\|WP_005684485.1\|73242_73800_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NZ_CP014201.1\|WP_029943817.1\|70424_71081_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP014201.1\|WP_076638763.1\|74080_74281_+\|acetyltransferase	unknown	unknown	unknown
NZ_CP014201.1\|WP_005684489.1\|78080_78767_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NZ_CP014201.1\|WP_005688681.1\|72532_73051_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP014201.1\|WP_005688690.1\|81008_81713_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP014201.1\|WP_014569351.1\|64983_65574_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP014201.1\|WP_005684487.1\|74382_76746_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237260
NZ_CP014201.1\|WP_077069253.1\|65794_67036_+\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|234789

Protein	Function_ID	Function_description	E-value
NZ_CP014201.1\|WP_005684490.1\|78756_79644_+\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	2.60846e-80
NZ_CP014201.1\|WP_005688668.1\|64051_64987_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	1.64969e-33
NZ_CP014201.1\|WP_014569361.1\|81705_83373_+\|signal-transduction-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	2.85674e-74
NZ_CP014201.1\|WP_005684496.1\|83462_84329_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	gnl\|CDD\|273991	TIGR02136, ptsS_2, phosphate binding protein. Members of this family are phosphate-binding proteins. Most are found in phosphate ABC-transporter operons, but some are found in phosphate regulatory operons. This model separates members of the current family from the phosphate ABC transporter phosphate binding protein described by TIGRFAMs model TIGR00975. [Transport and binding proteins, Anions].	1.71825e-97
NZ_CP014201.1\|WP_005688187.1\|67087_68140_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP014201.1\|WP_014569349.1\|61944_63237_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.72204e-71
NZ_CP014201.1\|WP_005684479.1\|68764_70336_+\|ribonuclease-Y	gnl\|CDD\|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	0
NZ_CP014201.1\|WP_014569350.1\|63236_63965_+\|SDR-family-oxidoreductase	gnl\|CDD\|235506	PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional.	3.75019e-52
NZ_CP014201.1\|WP_014569356.1\|71108_72374_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	3.8383e-138
NZ_CP014201.1\|WP_014569360.1\|79914_81012_+\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	4.90945e-08
NZ_CP014201.1\|WP_005684485.1\|73242_73800_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.40425e-33
NZ_CP014201.1\|WP_029943817.1\|70424_71081_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	4.23849e-64
NZ_CP014201.1\|WP_005684489.1\|78080_78767_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	2.31232e-125
NZ_CP014201.1\|WP_005688681.1\|72532_73051_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	3.08514e-22
NZ_CP014201.1\|WP_005688690.1\|81008_81713_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.69015e-95
NZ_CP014201.1\|WP_014569351.1\|64983_65574_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	2.71207e-42
NZ_CP014201.1\|WP_005684487.1\|74382_76746_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237260	PRK12906, secA, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP014201.1\|WP_077069253.1\|65794_67036_+\|competence/damage-inducible-protein-A	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	0

>NZ_CP014201.1|WP_005688681.1|72532_73051_+|ComF-family-protein
MQVAAEPCLDCRKWAKHGPLLNNRALFVYDAKMKAWIYQYKGLGDYRLHVAFQDLIAERLRHAEALVPIPSEAKHYEWRGFDPILGLFGCLPLQNWLQKSATARPQAQKTRRERLKTPQSFRVLVSAKTLNRVRQITLLDDLYTTGRTLYHARDALVAAGFKGTIQAFTLIR
>NZ_CP014201.1|WP_014569356.1|71108_72374_+|DEAD/DEAH-box-helicase-family-protein
MDLAGAQLTQRELARLAVSNISHATVVPALVKDHHQWQCQRCCSRRPVALPDGRIYCSECVALGRLTNADHLYRFEQAHLPVGDGQLTWHGVLTPDQQAASDALQASVAAGREHLIWAVTGAGKTEMLFPTIAQLIQQQKRVAIVSPRIDVIRELAPRFRTAFATTPISVRYGGHFDQTDSDLLLATVHQLLRFYRAFDLIVVDEVDAFPMRGTPMLHQAVRQARRGSIAYLTATPDRQLKQAIRRGRLGVSRLFRRFHGHPLPVPRIQLVNLRHVPHQLPKAVIVWVQQVLATKRVCLLFVPKISWAEQLAGKLRQIGLKAAGVASTDAQRAEKVTAFRQGQLEVLVTTTILERGVTVPRCAVAVLAAADPEFSASALIQIAGRAGRAADSPDDPVVFFSDRYTLAMLAARRQIVMMNGR
>NZ_CP014201.1|WP_029943817.1|70424_71081_-|YigZ-family-protein
MMKPYLTIKESGNYTQIIKKSRFITHLARIHDEDEAKAIIDRISHEHAKANHNVFAYVLGNENQIQRASDNGEPSGTAGPPTLEGLLQHELRDTLAVTTRYFGGIKLGAGGLIRAYAGNVNAAIETIGIVARIKQKAVTFQIPYADLDPLQHFLETHNLTIATIDYGVAVTLTLHLDADQLDKNLALIKDFLHGQFDPQIGTSQYREVPYATSEVHKP
>NZ_CP014201.1|WP_005684479.1|68764_70336_+|ribonuclease-Y
MSSVTLVSITLAAVIALAVGLLIGFALQKKLHQNSLDRATQTAEGIIEAAKKEAATLKKEKLLEAKDENHRYRTQLEDELKDRRAEVQKSEHRLNQREDTLDRRDDTLDRKEQSLADREANLNKRQQQLDEREQAISSEISKQQTELERIAELSHEQARTQILDQTQSELTHERAVMIKESEDEAKEAADKKAKVLIADAIQRSASDIVAETTVTVVNLPNDDMKGRIIGREGRNIRTLETLTGIDLIIDDTPQAVVLSGFDPIRREIARIALEKLIQDGRIHPARIEEMVDKARKEMDDRIREIGEQAIFDVGIHNMHPDLIKILGRLHFRTSYGQNVLDHSIQVAKLAGVMAAELGEDVTLAKRAGLLHDIGKALDHEVDGSHVEIGVELATKYKEPKTVINAIASHHGDVEPTSVISVLVAAADAISAARPGARSESLENYLHRLEKLEAIANSHAGVDHSFAIQAGREVRVIVQPEKLSDDQSVILARDIRNEIEKELEYPGHIKVTVIRETRTVEYAK
>NZ_CP014201.1|WP_005688187.1|67087_68140_+|recombinase-RecA
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAVAMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMGDAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGNRTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIEKQVRLAYGMSPDHVIDQADIETDTTTSAAS
>NZ_CP014201.1|WP_077069253.1|65794_67036_+|competence/damage-inducible-protein-A
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQTLAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMVDHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMIGIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDIPGVSAYFKGGFVTYALATKAAFLNIDARQLSEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAVMTGMMMVLKRLRE
>NZ_CP014201.1|WP_014569351.1|64983_65574_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MNLPNKLTLIRIFLIPVFTLLLAFNWPAGYLTIAGTKVAMSWFIALIIFIVASLTDFADGQIARRKHLVTNFGKFADPLADKLLVMTAFLFLTAAGQIPAWGTAIILWRELAVTGLRLLLSNEGEVLAAAWPGKIKTNTQMFAIIFLMLNNAWFNNINIPFALILFYVAVFFTIYSGVEYFYKNRGVFADSFGSKQ
>NZ_CP014201.1|WP_005688668.1|64051_64987_+|helix-turn-helix-domain-containing-protein
MDEIGQKLRDARIEKGYTIDDLQQITKIQKRYLIAIEEGHFDALPGDFYVRAFIKQYADTVGLDGDELLTQFQQDIPEPQPQEYAAQSVENKTRATRAEEASPVNRLRRYLPQIAIAAFVIVAIIVIYVVMLFSQSGPKQTIPADSESVAVSSKRSSSKASKSSKTSSSSKSSKSSASSSSKSSEKASKESKKKSDKLDISVAAANGATQAVTLKNLPTSGNKLTLGANGATAWISVIVNGSTTWQGSLTSGNTQEVTLPDNTSTFQVRSGNATATTIELNGKKVDISNGTSVVRTITFTSSTSESEASQE
>NZ_CP014201.1|WP_014569350.1|63236_63965_+|SDR-family-oxidoreductase
MRSALIIGASGDIGQAVAAKLAAAGWSLYLHYFKHEQVVMDQMKAYQAAYPHQDFIPLQYDLTDDRHLDELTNQLFSLDAVIFAAGMTYYHLFKETTVPEMTTLMRVHLLTPMVLLTKVERKLAQSGHGRVIFIGSVYGGTGSAMEVAYSTVKGAQSAFVKAYAQEVASLGITVNVVAPGAVTTKMNTKMFDSDTLAKVQAEIPAARFATPQDISYYVSMLVAKDAAYLTGQTLYVTGGWRM
>NZ_CP014201.1|WP_014569349.1|61944_63237_+|insulinase-family-protein
MKTQYFRDVDETLITTTLPNGLRLQVVPRPAYHKSYAIMTTDYGAIDTRFAPDGKQMVTYPAGIAHFLEHKLFEKEDHDAFDLFGETGASANAFTSATKTSFLFSTTTQFNKNLQILLDFVQAPFFSTESVAKEQGIIGSEIQMYQDDPGWRVYAGLLENLFPNHPAHVDVAGTAASIAQITPEMLYTIHRVFYQPSNMTLVIVGNIDVENVIDFVAANQAQKTFPTRQPIVRGVEADVQTADIIPYRELKMPVSRPKTLVGFKGQVAIPQTAAGWQYQLSIRLLLEVLFGDSSQLYQAWYDRGLIDDSFDFDFTNQRSFSYGLVGGDTDDPQGLSAAIKEVLAHAADQADLNRNRVALIKRASLGKYYAGLNGLNGVANQLSALSFGEASLFDFPQILNRISFEDLEQLIPKLFNTEALTVLTMLPEGK
>NZ_CP014201.1|WP_005684485.1|73242_73800_+|ribosome-associated-translation-inhibitor-RaiA
MLTYNVRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAHVNLKVYPDKTAKVEVTIPLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSREKGFGQIDIDSNAPAEPKPAEDDDNLKVVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDADTNGTSIVYKRRDGRYGLIETNE
>NZ_CP014201.1|WP_076638763.1|74080_74281_+|acetyltransferase
MAKVWLSRSRTLMFWFMPITRSPAQKPAHKDLGRNDQTRVITPKATYAPVSNRAGSRSPSYFQSPL
>NZ_CP014201.1|WP_005684487.1|74382_76746_+|preprotein-translocase-subunit-SecA
MANILRKWVESDKREIGRLGKIADQVQRYEDEYAALSDDQLKANTQKFKDRLAAGATLDDILPEAFATAREGAKRVLGLFPFRVQIIGGIVLHEGNIAEMKTGEGKTLTATMPVYLNALTGKGVHVVTVNEYLSTRDATEMGELYNWLGLSVGLNLNSKNSDEKREAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNFAIVDEVDSILIDEARTPLIISGGAEKTTGLYIRADRFVKTLKADTDYKIDWPTKTISLTESGIRKAEKNFGLDNLYDTENTALTHHIDQALRANYIMLKDIDYMVSNGEVLIVDQFTGRAMEGRRYSDGLHQAIEAKEGVQIQDENKTMANITYQNFFRMYTKLAGMTGTAKTEQEEFREIYNMEVISVPTNKPVIRVDSPDVLYPTLDAKFNAVVDDIKKRHKKGQPILVGTVAIESSERLSKQLDDEKIPHTVLNAKNHFKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPGVTELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSTQFYLSLEDDLMKRFGSERIKAMLDRFKVADDDQVIQSRMISRQVESAQKRVEGNNYDTRKNTLQYDDVMREQREVIYKQRQQIINEDETLKPVLMAMINRTITRIVQTHTQGDQKDWNLDALYAWITANMADPEKFKRSELDGKSQDELIGLLADMAETNFQHKNKQLGDDAQMLEFEKVVILRVVDSAWTDHIDAMDQLRQSIGLRGYGQMNPLVEYQEEGYRMFEEMIASIDDDVTRLFMKAEIRQNIRR
>NZ_CP014201.1|WP_005684489.1|78080_78767_+|cell-division-ATP-binding-protein-FtsE
MIQMENVTKQYANGVTAIKDLNLKIQDGEFVYVIGPSGAGKSTFVKMLYHELKPSSGSIKIDDFDFSTMKPSQVPFLRRHIGIVFQDFKLLPRLTVYENVAYAMQVIEAPDDKIKDRVLEVLGLVGLEQKLRRFPDELSGGEQQRVSVARAIVNKPKVLIADEPTGNLDPQTSDEIVDILERINANGTTVIMATHNKDIVNERQHRLLEIAGGRLVRDEEGGTYGNEE
>NZ_CP014201.1|WP_005684490.1|78756_79644_+|ABC-transporter-permease
MKSKVFFRHVKDSLRSLRRNGWMSVAAVSAVTVTLLLVGIFMALIFNLHHISQQVENDVQVRVYIDKKTTTKQRDDLKDKLKKLDHVNKVTYRSRQQELDTIIGGYGSQWRMFSGDQNPLSDVFMVKTNSPKATISVSKEAQKLDHVVDASYGGRTAKKLFNSVDVAQKWGLAFTILLLFVAVFLINNTIRITILSRSDEIRIMRLVGATNSYIRWPFLLEGAWTGLFGAVLPIIIVDVGYAIVYRSFTYANGASGYTLYANMPFLFWLDLMLAGIGIVIGALGSVISMRRFLKF
>NZ_CP014201.1|WP_014569359.1|79721_79859_+|hypothetical-protein
MGGFNEWQYDVLNTQAYVENNSYMLIDGTKMAVFRHFLVDEPKTL
>NZ_CP014201.1|WP_014569360.1|79914_81012_+|PDZ-domain-containing-protein
MAVIIALLISPIGAVFWLALGLTILYAVSRTSRERHQYLRAIHPQHSEIAPFFWVGILLGIVISALMLVARLQVSLPALLALSGSTLVGLIFSGWRFSPWWLGLAGLVELLRPTTSQMSADLAVLVGVLWLAQALIARLNRGAQIESPVILQDRRQRQQVAFRLRQFYWVPLFLPVSVDQVAGLPLLSIATDTFVAVGLPLVLGAAFTTQRDRVQPYLRRSWPWFAVAGGGLIVFGLVGRILTMPAMTIALVPVLVSLILGAGLVWQAHQVHLNVTQTNHGVVVIGVVPQTPAAQMDLQPGDRVLTCNHIAVNNAAELYNAIQKEPTYCRLRLQQADGEIRLAETAIFAGAPHELGMILFPEETA
>NZ_CP014201.1|WP_005688690.1|81008_81713_+|response-regulator-transcription-factor
MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLDVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQSQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDALLNGVWGFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQMEAPHE
>NZ_CP014201.1|WP_014569361.1|81705_83373_+|signal-transduction-histidine-kinase
MNKRILRRVLVISLLSLAGFFVLVTTVNQQIVHQQARDLRRVARTYAASAKDGVDPQALAKSEAAFITVVPDNPKTTRQKVMADALRGNHREPFVTTVNVLGRAEQAYLFRHRGHWVAVSRYKSSVWTTAPEQFWILTLTFAVLIALILAWLFRSEHQYQEAIRVMSHNLDRIRQKKEPEPVILPPQSPFTPVARRINALAAEQTHLREKVAVRQSSFDRLIDNLPLGVMLIDTNKDVILHNHAMSQLLGHQIPQPRHNYLDDVKTYALARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRLQVLVILYDVTYLRQVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKNDPATLDKFLKIIFDESKRLTQLINDILTLSRPESNQTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDLQVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETEQARIFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLPVSKRQQQD
>NZ_CP014201.1|WP_005684496.1|83462_84329_+|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein
MKKIVTLFSIVFLALLASACGSSHSSKQSGESITAVGSSALQPLVEAAGEQYQTEHLGVFINVQGGGSGTGLSQIQQGAVDIGNSDLFAEEKPGIKANALVDHKVAVVGIAPIVNPKVGVKNVSMTQLQQIFLGQITNWKQLGGKNVPIVLVNRAQGSGTRATFEKWALEGKQPIAAQEQDSTGMVRQIVGSTPGAISYVAFSYVDKTVRSLSVDGVAPTDSNVATNRWHIWSYEHMYTKGRPSGLTKRFLTYMMSPAIQKKLVQKMGYIPMTKMKVVRNASGQISRP

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Crispr_ID: NZ_CP014201_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014201_2

251840-251983

Orphan

Consensus_repeat	Method
AGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014201_2

>merge|NZ_CP014201|2|251840-251983|CRISPRCasFinder
AGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGGGCGTAAAGGTGGGCTAGTGGCCTCAGGCGTGATGACCGTACTTTGGTCATTGCGCCTGAGGTCCTTACACGCAGACTTCTGCGCTGGGGAGCGCGTTATGG

>NZ_CP014201|2|2|251840-251983|CRISPRCasFinder
AGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGG	GCGTAAAGGTGGGCTAGTGGCCTCAGGCGTGATGACCGTACTTTGGTCATTGCGCCTG
AGGTCCTTACACGCAGACTTCTGCGCTGGGGAGCGCGTTATGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014201.1\|WP_077069285.1\|258435_258678_+\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225215
NZ_CP014201.1\|WP_005685805.1\|252065_253793_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP014201.1\|WP_005685800.1\|244489_245116_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_005685812.1\|258015_258216_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP014201.1\|WP_005685814.1\|258919_259402_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP014201.1\|WP_077069283.1\|253965_254664_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|376885
NZ_CP014201.1\|WP_005685816.1\|260233_260812_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP014201.1\|WP_005685788.1\|238819_239644_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP014201.1\|WP_005685802.1\|246675_248511_-\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919
NZ_CP014201.1\|WP_005685815.1\|259407_260043_+\|glycoside-hydrolase-family-73-protein	unknown	unknown	gnl\|CDD\|224619
NZ_CP014201.1\|WP_005685793.1\|241239_241473_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NZ_CP014201.1\|WP_005685798.1\|243310_244231_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP014201.1\|WP_005685808.1\|254776_255706_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP014201.1\|WP_005685790.1\|239826_240870_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP014201.1\|WP_005685803.1\|248961_251610_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP014201.1\|WP_005685796.1\|242034_243108_+\|phosphomevalonate-kinase	unknown	unknown	gnl\|CDD\|130287
NZ_CP014201.1\|WP_005685809.1\|255772_256417_-\|YkyA-family-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_005685794.1\|241488_241698_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_049173293.1\|245194_246661_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP014201.1\|WP_077069284.1\|256723_257689_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377599

Protein	Function_ID	Function_description	E-value
NZ_CP014201.1\|WP_077069285.1\|258435_258678_+\|AbrB-family-transcriptional-regulator	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	0.00368242
NZ_CP014201.1\|WP_005685805.1\|252065_253793_+\|hypothetical-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	0.000203276
NZ_CP014201.1\|WP_005685816.1\|260233_260812_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	1.78198e-121
NZ_CP014201.1\|WP_005685814.1\|258919_259402_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.59746e-09
NZ_CP014201.1\|WP_077069283.1\|253965_254664_+\|Fic-family-protein	gnl\|CDD\|376885	pfam02661, Fic, Fic/DOC family. This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604.	4.68446e-07
NZ_CP014201.1\|WP_005685788.1\|238819_239644_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.06165e-122
NZ_CP014201.1\|WP_005685802.1\|246675_248511_-\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP014201.1\|WP_005685815.1\|259407_260043_+\|glycoside-hydrolase-family-73-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	3.14086e-59
NZ_CP014201.1\|WP_005685793.1\|241239_241473_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.762e-09
NZ_CP014201.1\|WP_005685798.1\|243310_244231_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.2502e-169
NZ_CP014201.1\|WP_005685808.1\|254776_255706_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.22407e-79
NZ_CP014201.1\|WP_005685790.1\|239826_240870_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.97766e-40
NZ_CP014201.1\|WP_005685796.1\|242034_243108_+\|phosphomevalonate-kinase	gnl\|CDD\|130287	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase. [Central intermediary metabolism, Other].	2.09325e-138
NZ_CP014201.1\|WP_005685812.1\|258015_258216_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.42191e-32
NZ_CP014201.1\|WP_005685803.1\|248961_251610_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	0
NZ_CP014201.1\|WP_049173293.1\|245194_246661_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NZ_CP014201.1\|WP_077069284.1\|256723_257689_+\|hypothetical-protein	gnl\|CDD\|377599	pfam06081, ArAE_1, Aromatic acid exporter family member 1. This family consists of bacterial proteins with three transmembrane regions that are purported to be aromatic acid exporters.	1.67875e-56

>NZ_CP014201.1|WP_005685803.1|248961_251610_-|YfhO-family-protein
MSRSNKQSTWPLLFISFGVTFVISLIVFAALKMAPFGSSSILANDSAVQYVDFFTYLKHALLGTAGKAYSFSNSLGGGMYANWTYYLLSPFNLVFVLVPRSALPVAVLFVTALKYSTAAMAAQALANYLTGGRWYSFVFSISYGLSGFLVANFLNIMWMDGVILLPLVVLGIERLFDEQRLLPYVIPLSLAFITNYYIGFMVAIFAALYFGWHWAIQHQPQLLRKINLFVIGSLLSGMIAAVVLIPTYYALSASRLSSAGADFSFKALYSLIDLPSKLLPGSFNFDQLSNGLPNLYMGMIGLLGASFYFLARTIPVRERLVSAGMTLLLILSIWLNPLAIIWQGFRAPVWYLYRHSFIVIFWFLLLSLRGLMQLRAVSRLRLILTSLVVGGLLIIPAALRMGTHKYVTLPHLILAGILLLTAAVLLYSYATRLFSVKWTVGALLTLLVIDLGANAYASLGAISFISKADFTVTSKVLSAAYNDAKKIGPSGFYRINADTQRSMDDPYQYNFNGISTFSSVLNTSTINTLTNVGAIGSAGRVKNNDLTWPLESLLGVKQLLLLNTTSKKVGTSEYQQASSRNIFNARYDLPAYKLVGHNQLFNIYENPDALPVATQIFSKIPTQVQANPVLQQNAYFATLTNQQTAPIFTTSDFSGISVDNVKPLTTLTNAVATKVNKKLGASITLSVNPSSEQQYLVMGEGMRKDMTISINNIPLKNDPDNGSKTVSLPLNATKPTTVTLTFNRGFSQIDLDHFALYTLNRQAFKQTVKTAKANAPKQTIQNGRLSLTTQENNSGYIMLTIPYEKGWQADTQSVKIQNYRGFIGIKVPKKATTFTLTYHTPGIPLGWLVTIMGLIGLAALILYEYHPRFRKRMMTGSQPKSR
>NZ_CP014201.1|WP_005685802.1|246675_248511_-|PTS-glucose-transporter-subunit-IIA
MSDPAKIATQIMAAVGGIQNVKSLTHCATRLRFTLRDKQQFNQAQLEKMPEVLSTVVAGDESQVVIGANVTKYYAAIQQQYQLHEAGEPNQPTQAQEKNLVKRILNAIVSIMAPIITVLIAGGMFKVVIAILALLGLDPKSTAYLTLSFMADAAFYFLPFMLAVSAAKKFNTNTYLAMMMAGVLLHPNFTALVAAGKPIALFGAPIRLASYGGSVIPIILIVWFMSYIERFAEKAAPNMIKTMLKPLLVALITAPIALIVIGPIGSLLGDGLYTAVTFINQHTPWLVPTLVGAFTPLLVMVGMHVSLLPLATLSMTKFGSETIMGPGMLASNIAQAGAAAAIAVREKQTRGRQIALSASVTALSGITEPALYGVTLKYKHALTCVVVSGGLAGLFAGLTGLVRYSFGSPGIFTLPVFIGANPDNFRNALLTVAIAFGATFLSTYFFATVETNASTSAKTQPQPFQSVVAGEMIPLARVQDEVFAAGTLGHGVAIIPESGTIVAPADATVSMLYPTNHAIGLTTASGQEVLIHIGIDTVRLDGRFFKPLVSQGESVKVGQPLIKIDLPLIEKSGFDPTVIVLLPNTPPERIEVHEKTSVCPGDKLFSFIPET
>NZ_CP014201.1|WP_049173293.1|245194_246661_-|glycoside-hydrolase-family-1-protein
MSIRQFPENFLWGGATAANQLEGAYNVDGKGLSTSDLLLGGTHNVPRQLTREVRPDAFYPSHEAIDHFHRYQEDIALFAEMGFKVYRFSIAWTRIYPNGSASDGPSKEGLAFYAALIAELKRYNIEPLVTISHFESPIALTKAFNGWASRDMIEEYVTFAQTIIANFHNDVHYWLTFNEINMLTRPMGAYLAGGMYVDDTNRFISPDIDSTQMRLQALHHQFVASARVCSFAHGFDPNLKIGCMLAYRMLYPLTSHPEDIALVQTATELNNFYCGDVQVKGRYPYFAKRYWRDHDITIDIEPWEEEILKRGTVDFFALSYYQSSTMTTTESGETSGGNFFAGVKNPYLQRSDWGWEIDPRGLRTALNQIYDRYQVPVMVVENGFGARDELIEQDGQKTVNDTARINYLRAHIAAMYDAIQDGVDLIGYTSWAPIDLISASTGEMAKRYGYIYVDKHDDGSGTLNRYRKQSFYWYQQVIRQNGLSESDA
>NZ_CP014201.1|WP_005685800.1|244489_245116_+|hypothetical-protein
MAGEQITNNTDTLNWQNIQAAAGTLYYQLEVEFDSGQKSYWYSNIAPLTITASAPQLHAVPNLQFALSSGANPSIADFYAAQGVTMVYQPSTIANQTNWDGNNHGALAIAGGGSTWSLNVQFSPFKNQTTQHYLSTETGGSAAVTLHFADGTAAQAKDDRQPVTVYSKVTKDVTTTTATTTSLQVPQTSTIQPGTYQSTATWTLVKAP
>NZ_CP014201.1|WP_005685798.1|243310_244231_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MSVKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEEAKASGIEDILIVEGKQKRSIEDHFDSAPELEQNLKEKHKDALLQLVHSTTDIGVNLFFVRQPYPRGLGDAVRLAKSFVGDEPFVVMLGDDLMNDKVPLTKQLIDEYDKTHASILAVKKVPHDEVSAYGVIDPEKEVSKDLYNVKKFVEKPAVADAPSDLAIIGRYLLTPEIFDILDNQKPGKGNEIQLTDAIDTLNQTQRVFAHEFKGDRYDVGNKFGYVKTNVEYGLTHPEVKDELRAYILDLAAKLQSGNPVGKPANKK
>NZ_CP014201.1|WP_005685796.1|242034_243108_+|phosphomevalonate-kinase
MITAQAPGKLYVAGEYAVVETGFPAIIVALDQFVTVTVEATKHFGSIVSEQYQENSLYWQRQGDEMVFDNRDNPFHYILSAIKLTEQYARELNKPLALYKLYIDSQLDAKDGKKYGLGSSAAVTVATIKALAKFYDLKMSKDQIYKLAAIAHLDVQGNGSLGDIAASVYGGWIAYRSFDKAWLAAARNQMSLSALINAEWPELSIELLTAPADMQLLIGWTGSPASTSQLVDKITLAKAKKPQLYHDFLTASRETLEKLIDGFREHSLSHIQAGIRRNRELLDELAHFSGVAIQTPALRQLVTLAEQADGAAKSSGAGGGDCGIVLIDSHQAIQPLLAAWRKHHIEPLKFKVHEIND
>NZ_CP014201.1|WP_005685794.1|241488_241698_-|hypothetical-protein
MSRNVNKQTIVYTLTDPENEAFKQVRRMNNVAADAKDEQLVAIGQAFAKLYPNAALTSIVLQQNAEVTA
>NZ_CP014201.1|WP_005685793.1|241239_241473_-|DUF2922-domain-containing-protein
MKTLIFNFKSEAGKSTSIRISKYEGAITAEQAQAFADAVAQAQAFKKEGIGLYATPVGAKVTETQSTEIFTTEKKPA
>NZ_CP014201.1|WP_005685790.1|239826_240870_+|glycosyltransferase-family-2-protein
MAGHEALVSVIMPVYNAEKYLTQALDSLLAQDYPNFEVLCVDDGSMDTSKVILATYARQNPRIRVIRVENGGQARARQIGIQHAKGSLITFMDSDDLVHPQWLATMAEGMRAPRVDMSVVNYYNYIGGTKLKARSFHEKVKIAGDDKYRYWLEDRDLRGYLWNKMFRAELFSQPVPVANFNLLEDAYFIGQLLPRIDQINFIDEPLYYYRFNATSSVHAKFQKRDLEAIHQLGAVFLTLAREKPELTSLAVRRYAALSLFVLSKMSPRQLVANWGYVQQLGMVLAQYAREFQGIISAGDADDLATDKSDKASLLDKLRAWSHLLGLPTFDDLNKLADSEDENVKKES
>NZ_CP014201.1|WP_005685788.1|238819_239644_+|type-I-methionyl-aminopeptidase
MITIKSAREIKGMAKSGAILAAMHVGLRDIIKPGISSWEIEKFAKEFFESHGAKAEQVGFEGYKYVTCVSINDEVAHAVPRKGLKLKDGDVVSVDTVISWNGYFSDSCWTYGVGKVSEADQKLMDVTKKSLYLGIDEAVVGNRIGDIGAAIQTYTEDDNGYGDVRELVGHGIQPTMHESPNVPHYGVPGHGLRLKAGMTITIEPMITEGTWKIKGKQVPGDTWEYYVTADGSKCAQYEHTLVITDNGPKILTSQGDPIDAKYQLTEDDLKTLPE
>NZ_CP014201.1|WP_005685805.1|252065_253793_+|hypothetical-protein
MRADTEDSSLVSQLKANAIWLLPLLAIILVLLVQWPQLHLTYIFHQDDTMPQLRRMESYVTSVRHGSYFPKVFPEEVRNFGYAFDAFYPSLLLLPYVWLRLTGMGIVSAYYGYQTLILVATVVTAYVSFLRIRRQPLAGFVFSLVYTTAVYRALDAFVRGALGENLAFIFLPVIAAGMYEIYAKQSRNWFLLAFGVTGLMYAHMLSLVMVMVFLVGGFLVLVALQRVTWRMVRYTAMAAVSALLMGLGSYLPMVELSRHLSLKLADSATIWPNYLQFNLGDLVTNSLSMYASTSSMQNVSQAFRPGIGVLMLVTAIALAIFWVKLSRAVKVAAGLGFIGIFLSTDLFPWALFSKTVLGTIQFPWRYLELVTLFFSLALGLLVADRSQPQPLALGLVLATCIVGFSYAVNINTTMINANTYRITDKNAVSYYQDSTGGGSEYAPREFDMTTFFKKNHQTVLASHNLEHVTTPTQNYNDMQFSYTSRRAVTLRLPKFAYVGYTVTVDGRPTAYHPSGKLDRITLHAPAGTHHVRVVYTGTVLQHVTGWISLVAAFVFFAWWIVVHARRQRDVDDALV
>NZ_CP014201.1|WP_077069283.1|253965_254664_+|Fic-family-protein
MFSEEIRGDVEVFEDKYKMSDAEEKLLFEKNLPSMIYLAGKYENLSTTLLDTKAIINNLTISGVKPDDVEVVLNLKAAYKYIVGLPQTIQFGIEQIQKINLIIQGAGTPDAGKFRTKTVLVGLTNEDYVPAIPNEANVTKNLEALLTSQKSATEKAILLMLTLSRQQIFTNGNKRTAIVAANALMYQAKVGLLAVPEKKMHWYLYQLAKYYKTGRADQLKRWLYEHAVFGIE
>NZ_CP014201.1|WP_005685808.1|254776_255706_-|glycosyltransferase-family-2-protein
MPQSVAIIIPCHNETENVPLIYQALIKTFRESLPQLQPQIWYVNDGSTDDTLDQIKQLQAKDDQVHYIDLSRSFGKEAAMYAGLSTAKADYYAVMDADLQDPPSMLPDMYAILQEGYDMAGAQRVDRSGEAHLRSFFSDMFYKFINKVSQTQIVPGARDFRLMTRQVVEAIVQMTERNRFSKGLFSWVGFKTKYLPYRNIERQHGQTSWSFSNLLRYAIDGIIDFSDAPLTFVSIVGITSFIGAFIALIFIVVRAALFGDPTSGWPSMVSIFLMIGGLQLFALGTVGRYIGRIYLETKRRPIFIAREIK
>NZ_CP014201.1|WP_005685809.1|255772_256417_-|YkyA-family-protein
MKKILIWLAGLALLIAGCSATLNPKQQLKTTTATVQTQVQKEQAALKIIGDSVGAFPSTFEKAYQDHPDTDFRNDDGPVKKLLAKRAAAFKQLEAANTALVNANNTLTKLNNQPTDDTPQTQVNKVLTSLKLAKLDHKTLVSYYREMQTAEDAFFDNTADSEETSQADLETQISQLNQYYSSLNQQIDVMTANLTTVSSQADSLAKAVKTMHDD
>NZ_CP014201.1|WP_077069284.1|256723_257689_+|hypothetical-protein
MHIGMRTIKTAVGTAAAMLIAYSLHLEYWAAAGIITILSVQNTTKASFRLVAYRLLATLLGFVIAIGAFLVLGYNAFAFGVFLVIFIPITNVFAVQSGIVMTAVLVTHFMMGRSCSWFWIKNELLLLAIGAGVALIANLFMPSLEAKIMGFQKQVEAEMREIIDHMSQQLGADQLKSADNWANLSDLKMTLDAAVAWANRHSDNQLLSENDYYQAYFEMRANQYELLRQMQDSLDRIETPVMQAAVISDALAMTASVLNEDNPAAQLVTMVKKIQRDFAASPLPTDRASFESRARLFYFLEDFSRLLQLKRNFNHIISSQN
>NZ_CP014201.1|WP_005685812.1|258015_258216_+|cold-shock-protein
MEHGTVKWFNAEKGYGFITREDGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSDRGPQAVNVNKD
>NZ_CP014201.1|WP_077069285.1|258435_258678_+|AbrB-family-transcriptional-regulator
MTVKTYRLGNSIVVTIPASFNIGENVEYQPIIDENGVISLLPVKYHIFRGDAGYDLRQAMLEENIGDNDIPIGREDAWHE
>NZ_CP014201.1|WP_005685814.1|258919_259402_+|GNAT-family-N-acetyltransferase
MLRFEEVAPDARLQYLDLLLVGDEDPAMLQRYLGAGTLFAAIDQQVPVGVAMVVAVNATTVELKNLAVTPARRRQGIASGLLRHVSLVYAEKYQDMLVGTGDADFDNLRFYMRRGFRFDSIRKHFFDEYSQPVYADGLRLQDMIVLRRKLLLTREDKTKE
>NZ_CP014201.1|WP_005685815.1|259407_260043_+|glycoside-hydrolase-family-73-protein
MAKKRRRFTLKKVPLAAWLVIAFFAVGSMLVVSSYWSQRQAEVSQRQAIVDKKAAEKAKKEAFIKRLVPTAQAMQKQYGVLTSITLAQAILESDWGTSTLAKDYHNLFGIKGTDPATTKVLRTKEYVNDKWITVDGRFRVYSDDAASIRDHALLFVNGTDWNPQQYATVRAAKDYKTAASALQTDGYATDPDYPQKLIHLIEAWNLTQYDN
>NZ_CP014201.1|WP_005685816.1|260233_260812_+|xanthine-phosphoribosyltransferase
MKLLEDRIKKDGQVIGTDVLKVDNFLNHQVDPDLMADLGKEFYRRFSNEPITKILTVESSGIAPAIATAMSFHKPLVFARKHKSLTLKDHLYTATVYSFTKKTSNEIAISRKFLSADDNVLIIDDFLANGQAVEGLMDIIDQAGATLSGVGIVIEKTFQKGRKLLDDKHIRVESLARIRAFEDGQVVFEPED

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Crispr_ID: NZ_CP014201_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014201_3

432794-432882

Orphan

Consensus_repeat	Method
TCCGCTTTTACGCCCATAACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014201_3

>merge|NZ_CP014201|3|432794-432882|CRISPRCasFinder
TCCGCTTTTACGCCCATAACGCGCTCCCCGGCGCAGGGACCTGCATGTAAGGACCTTGGTCGCAAGTCCGCCTTTACGCCCATAACGCG

>NZ_CP014201|3|3|432794-432882|CRISPRCasFinder
TCCGCTTTTACGCCCATAACGCG	CTCCCCGGCGCAGGGACCTGCATGTAAGGACCTTGGTCGCAAG
TCCGCCTTTACGCCCATAACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014201.1\|WP_005684795.1\|439127_440129_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP014201.1\|WP_005713815.1\|438320_438989_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP014201.1\|WP_077069348.1\|427198_428902_+\|septation-ring-formation-regulator-EzrA	unknown	unknown	gnl\|CDD\|179877
NZ_CP014201.1\|WP_077069346.1\|419294_420044_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982
NZ_CP014201.1\|WP_005684804.1\|430509_431727_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234960
NZ_CP014201.1\|WP_014569568.1\|422096_425561_-\|DNA-helicase	unknown	unknown	gnl\|CDD\|197217
NZ_CP014201.1\|WP_015764936.1\|433365_436008_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP014201.1\|WP_005713812.1\|425754_426366_-\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NZ_CP014201.1\|WP_014569566.1\|420036_421338_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP014201.1\|WP_014569577.1\|437570_438215_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|273662
NZ_CP014201.1\|WP_005684791.1\|442280_443078_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP014201.1\|WP_014569567.1\|421463_421994_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP014201.1\|WP_005684790.1\|443668_444325_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP014201.1\|WP_014569578.1\|441623_442280_+\|cell-division-inhibitor	unknown	unknown	gnl\|CDD\|179052
NZ_CP014201.1\|WP_005684794.1\|440216_441077_+\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP014201.1\|WP_005684793.1\|441078_441609_+\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
NZ_CP014201.1\|WP_155772850.1\|432050_432713_+\|redox-sensing-transcriptional-repressor-Rex	unknown	unknown	gnl\|CDD\|235486
NZ_CP014201.1\|WP_077069347.1\|426541_427024_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|224867
NZ_CP014201.1\|WP_064519969.1\|436287_437574_+\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|273659
NZ_CP014201.1\|WP_064519966.1\|429222_430380_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029

Protein	Function_ID	Function_description	E-value
NZ_CP014201.1\|WP_005684795.1\|439127_440129_+\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP014201.1\|WP_005713815.1\|438320_438989_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	3.20475e-79
NZ_CP014201.1\|WP_077069348.1\|427198_428902_+\|septation-ring-formation-regulator-EzrA	gnl\|CDD\|179877	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional.	0
NZ_CP014201.1\|WP_077069346.1\|419294_420044_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	9.30871e-78
NZ_CP014201.1\|WP_005684804.1\|430509_431727_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234960	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional.	0
NZ_CP014201.1\|WP_014569568.1\|422096_425561_-\|DNA-helicase	gnl\|CDD\|197217	cd09118, PLDc_yjhR_C_like, C-terminal domain of Escherichia coli uncharacterized protein yjhR and similar proteins. C-terminal domain of Escherichia coli uncharacterized protein yjhR, encoded by the o338 gene, and similar proteins. Although the biological function of yjhR remains unknown, it shows sequence similarity to the C-terminal portions of superfamily I DNA and RNA helicases, which are ubiquitous enzymes mediating ATP-dependent unwinding of DNA and RNA duplexes, and play essential roles in gene replication and expression. Moreover, The C-termini of yjhR and similar proteins contain one HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The PLDc-like domain of yjhR is similar to bacterial endonucleases, Nuc and BfiI, both of which have only one copy of the HKD motif per chain. They function as homodimers, with a single active site at the dimer interface containing the HKD motifs from both subunits. They utilize a two-step mechanism to cleave phosphodiester bonds. Upon substrate binding, the bond is first attacked by a histidine residue from one HKD motif to form a covalent phosphohistidine intermediate, which is then hydrolyzed by water with the aid of a second histidine residue from the other HKD motif in the opposite subunit.	7.45515e-57
NZ_CP014201.1\|WP_015764936.1\|433365_436008_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP014201.1\|WP_005713812.1\|425754_426366_-\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	4.53645e-113
NZ_CP014201.1\|WP_014569566.1\|420036_421338_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.58578e-58
NZ_CP014201.1\|WP_014569577.1\|437570_438215_+\|HAD-IA-family-hydrolase	gnl\|CDD\|273662	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created with the knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly related HAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity].	1.8611e-34
NZ_CP014201.1\|WP_005684791.1\|442280_443078_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	5.70372e-132
NZ_CP014201.1\|WP_014569567.1\|421463_421994_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.35073e-15
NZ_CP014201.1\|WP_005684790.1\|443668_444325_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	9.57353e-65
NZ_CP014201.1\|WP_014569578.1\|441623_442280_+\|cell-division-inhibitor	gnl\|CDD\|179052	PRK00513, minC, septum formation inhibitor; Reviewed.	8.29414e-38
NZ_CP014201.1\|WP_005684794.1\|440216_441077_+\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	2.05192e-78
NZ_CP014201.1\|WP_005684793.1\|441078_441609_+\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.17601e-05
NZ_CP014201.1\|WP_155772850.1\|432050_432713_+\|redox-sensing-transcriptional-repressor-Rex	gnl\|CDD\|235486	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional.	2.44e-81
NZ_CP014201.1\|WP_077069347.1\|426541_427024_-\|GAF-domain-containing-protein	gnl\|CDD\|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	3.50085e-61
NZ_CP014201.1\|WP_064519969.1\|436287_437574_+\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|273659	TIGR01499, Folylpolyglutamate_synthase, folylpolyglutamate synthase/dihydrofolate synthase. This model represents the FolC family of folate pathway proteins. Most examples are bifunctional, active as both folylpolyglutamate synthetase (EC 6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12). The two activities are similar - ATP + glutamate + dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP + orthophosphate + dihydrofolate or tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC gene of E. coli suggests that both activities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	7.13199e-169
NZ_CP014201.1\|WP_064519966.1\|429222_430380_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	1.16371e-175

>NZ_CP014201.1|WP_155772850.1|432050_432713_+|redox-sensing-transcriptional-repressor-Rex
MVVSKQALSQATIKRIPVYYRTVKDLQQAGVKRVRSDRLSKLVHIAPATIRRDFSNFGDLGRSGYGYSVDLLAQVFGELLEVHSEEQMLLVGCGNLGRTLLTNNFRRNPDLTIVMGFDTDPQLIGTTIAGVPIFDLTTLAKNIRPGMHTAIVCVPSSAQTSVINQLEANGITAILTFAPKPVPAKPTTTIRYIDLTSELQALLFVDHQKQVARQVTEPLH
>NZ_CP014201.1|WP_005684804.1|430509_431727_+|tRNA-4-thiouridine(8)-synthase-ThiI
MQYSEIMVRYGELSTKGKNRQAFIGRLNGNVTRALHEFPNLTIRPKRDRMHIELNGEPSDQVMARLSQVFGIQNFSPSIAVEKDMAKVHEVALQLMNETAPHGISYKVNTRRSDHDFALDTNAMNLDLGDFLTDKRPDLVVKMHHPDMILRVEVRREAIYLSTKTIQGAGGLPVGTAGRAALMLSGGIDSPVAGYYALKRGVDIEMVHFFSPPYTSQQALNKAKQLTAKLTPYVGRIYFIEVPFTEIQEAVKATVPEGYLMTVQRRMMLRLTEAIAKQRGDLAIFNGESVGQVASQTLESMAAINDVTTMPIIRPVATMDKNEIIAEAEKIDTYDLSIMPFEDCCTIFAPPSPKTKPKTDRARYYESKLDVDGLMARALAGIKVQEIKSSDQFLNQDQDVIAELL
>NZ_CP014201.1|WP_064519966.1|429222_430380_+|cysteine-desulfurase
MIYFDNSATTKISPDALATYNKVSTDFFGNPSSLHALGTKANEVLQSSRAQIAKLIGAKPDEIYFTSGGTEGDNWVIKGTAMAKREFGRHLITTSIEHPAVINTMKQLEKLGFEVTYLPVDRRGFIHIDDLKAAIRKDTILVSIMAVNNEIGSMQPIVQAARVLDNYPNIHFHVDAVQAVGKGLDAALQDPRIDFLSFSGHKFHAPRGTGFIYAKEGRMLDPLLTGGGQEHDWRSGTENVPAIAAMAKSLRLLLANEDANVARQQAVRKRIFDHVSQKPKVTMFSQLTPDFAPHVLCFAIGGVRGETIVHAFEDHQIYISTTSACSSKKGTESSTLAAMHTDPKIATSAIRVSLDEANTLDEADAFNAAFDTIYAKFAKLDKATV
>NZ_CP014201.1|WP_077069348.1|427198_428902_+|septation-ring-formation-regulator-EzrA
MIWFFIIVAIIIVAAGSVWWLQHYFQTRIKDLDEKVEAIDIGALSSQIRSIEQLKLTGDSLATFGKWERAFDQLNDHDLAELQKILLDLEDQVKRFRLDRASKIAKVLEDKIETAQRQYELISQALQDIRHDEADNRSKMLQLRDDYQVSRKTILAKSFVFGDAQPALEQQLQQLAQLFQKIDQINNDGDHQAAKAEIKQLAEQMRVLKKQVKELPPLVNEQVNEFPGQINEIQHGYRQLTTAHYVFTDDIPGMVADVEAKMKDANAALKSIDVEATEAANAEIEAEIDKMYAIMEKEMQAKKRVDIASPDLRRFIDHALRQNRELQAELDHLNQSYTLNHHEIKTAKNLKMQLDAIDANYTKDTDAIEAGEAVYSDVIARFDETKEQLTAIEKQQVQINQDVAGLKKGEIIANKQAESFELDMRNIKHEIVRHHLPGLPQDYVNKVKHVTAEIDQLNHDLDQVKINMDAIAKFLIKIASDIDDLKKTTSALIDAAGLTEELMQYANRYKITVKPVADAVKHATELYMQFDYQQAADTLATALEQTEQGSYKKVEDAYLARKKASLY
>NZ_CP014201.1|WP_077069347.1|426541_427024_-|GAF-domain-containing-protein
MTTLDPIIIDQLDGLLTGETNPITVLANASALLNDSMPELNWAGFYLYNGKTGQLDLGPFQGKVACMHIQPGKGVVGNSYQQNSVIRVANVHEFAGHIACDSASNAEIVVPINVNGETVAIMDIDSPKLDRFSENDEQILTQFGQTLANHLDTAALNTVY
>NZ_CP014201.1|WP_005713812.1|425754_426366_-|30S-ribosomal-protein-S4
MSRYTGPRWKQSRRLGLSLSGTGKELARRPYAPGDHGANNRRKISEYGQQLREKQKLRWMYGLNERQFQNLFLRAGKIKEGTHGDNFMILLETRLDNLVFRLGLASSRPQARQLVNHGHITVDGKRLDIPSYEVQPGQVIGLRERSQNLAVVNEAIENTVSRPAYVTFDDNKKEGSLVRLPERGELEPEVDESLVVEYYNQKL
>NZ_CP014201.1|WP_014569568.1|422096_425561_-|DNA-helicase
MISTKEIANYYLQSLRQSSLVEVNAKYTKPFSTNYSEIVEGKILSPTFPDFFKRTRKGLAKTESSNGLSVFIMPIVIKTAKVFIYPFIIPAMLNEDGQLTHQEYTVPWIQRELMTPAGEDSSHPLRYKPIANVNDYFDAINGGALDHLEWSDYIHQAEALFQHLTNLSFATFKSIEKVNNYVLPAEPTGICHIIPGEQNLGFSAQIQGLYQDILASKEQLPLFDSLNPESSVQDEKILSQASMRSHYSNHLAQMSPKHGMTDTQRNALANLDATTNGQTLAVSGPPGTGKTTLIQSVVATQWVQAAFKETMPPICVASSVNNQAVTNIIQSFQAGELNDEEVAAFSLPKKAIYQKMSVKKSTLISHWLPGHNTYGLYLAANRNLTDGTLPYAAISINHNEYFDQLITDDALSKATKVFFQNYHALFPDSGGSLQKCRETLHGYLTNVVEDIRTIINGQDVNFDKQAATLSATLSEQTIQLTKSQASVDEAERQLRGWYDFDAKHASILDYFPLIGPKRKAARKIDYLHLKGFSDDTDLQRNLDHVRAENTALSKTINTTKLALIDVQKRQENFKIACAQNNIKLTSTNTQSRSDLNKQVDTNLRYLAFLLATHYWEARWLTEMKQHQTNSATAAFEKVRKVWQVRAMLTPCFVGTFYQVDAFFRKDHVPFLNGIDLLIADEAGQVSPELAIASLALAKRFLAVGDVKQIEPIWSVQKSVDEANMRSLTKFSEDEIAAIKKTGFATSSGNLMSVAQHQSVFTQSEIVGGGLLLQEHFRCLPKITDYFNTLAYQGKLIPKRSNPTITSSDQLPQLGYAHVFGLSAIQNGSRYNRREADAIAQWLKNRKASLRNLEGKNVKDWKLGDTVAILSPFNRQAKEINEALTRYELDDQKIIVGTVHAMQGAERRVVLFSPVYDNAKTEFFFDKGINMLNVAVSRAKDSFLYFGNIDLLTTKGNKPSSQLARRLFSESSNEIKDVTLFTEEEIKSNRQFVLSDAKTHDKWLYHQLLTAKKQIDISSPYISKRSIEAGTIALLSAIKQATRRGVRVNIYPNRAMYDQTDNQKMANFEGGIALLKASGASIFEASSRVHSKQVVVDGHILANGSFNWFSAVRDENSPYYNRDTSTVIDDENLVRKFSLPLFNLAKNEDNFKDSD
>NZ_CP014201.1|WP_014569567.1|421463_421994_-|helix-turn-helix-domain-containing-protein
MFGERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADLLGNEPPEPKPAANRPSSAITITSLINDRLGNYTGFQIAEGIPSKTAPTFLLIGESSQRGLLGTTRLIELGWYQTRHAAEAELKQIQEAMLRGDAVYHLAYTAKVNKKGMLGVRLLD
>NZ_CP014201.1|WP_014569566.1|420036_421338_+|amino-acid-permease
MNNVVKKEKMGYWSMILLGINGIIGSGIFLLPNQAAKLIGSASIFVLLFDALLVISIALCFAQAATYFDRDGGPYLYAKDAFGDFVGFEVGFVTWAIRIIAEATMAVAFTTALVGTFPALNQPIIRDSIISIMVIGLALMNIAGVRVSTVVNNVISVSKLVPLVLFVAIGIFFIKGSNFTPLFPGGSYKSGSFGQAAVVMFYAFTGFEGLVVAAGDMKNAKRNLPKAVATVMTVVALFYILIQVVSTGILGNALASTDTPIQTAFAKITGGFGNALVAAGTLLSTGGLLVASSFITPRSGVALAENHMMPQLLAKRNRVNSPYVAIIVSATITLLIAYSGTFGYLAQISAVSRFAQYIPTCLAVIVFAKTKTKDKSSTFHLPLGPVIPAVAILVSIWLLVQVQVSQLVIGLGALLVAVPFYFLTYTYRQHGKA
>NZ_CP014201.1|WP_077069346.1|419294_420044_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MRPIIALTGDSMVAPSPVINLNYADMAPNMIKNAIVKVGGAPLILPYPEDDAAAASLGAQYVDVFDGLVLPGGPDVDPTFYQEEPIQAMGRATYQKDRFEIALIKATLKANKPIFAICRGIQILNVALGGNLYQDLPSQNPQATIRHAQAAPGQWPTHHVAITPGSHLAALLGTSSYVNSRHHQAVKDVAASLKVTAKAPDGVVEAVESKESNLILGVQWHPENMWQQFPEQLPLFADIVKRAGGDGNE
>NZ_CP014201.1|WP_015764936.1|433365_436008_+|valine--tRNA-ligase
MSDETLAPKYDHKAVEEGRYQEWLDEDVFKPSGDKKAKPYSIVIPPPNVTGKLHMGHAWDTTLQDIVIRQKRMQGFDTLWLPGMDHAGIATQAKVEAKLRKEGISRYDLGREKFVQKVWEWKDEFAKTIHGQWAKMGLSLDYSRERFTLDKGLNQAVRRVFVDLYNQGLIYRGEYIVNWDPQARTALSDIEVIHKDDKGAFYHVKYPFADGSGYIEIATTRPETMMGDTAVAVHPGDERYKDMVGKELILPLANRKIPIIEDAYVDPEFGTGAVKITPAHDPNDFQVGNRHDLKRINTMNDDGTMNENAGKYQGMDRFEARKAMVADLDKAGLLLKVEPIVHSVGHSERTGVQVEARLSTQWFVKMKPLAEAAIKAQQEPDKKVTFVPERFEHTYLQWMENIHDWVISRQLWWGHQIPAWYNKQTGETYVGMEAPKDIENWKQDPDVLDTWFSSALWPFSTMGWPNTDAPDYKRYYPTDTLVTGYDIIPFWVARMIFQGLHFTHQRPFQYTLIHGLMRDEQGRKMSKSLGNGIDPMDVIEKYGADALRWFLITGNKPGQDTRFSYKQVEAAWNFINKIWNISRFVMMNLGDLDTPQQPDPSTFDLSDKWLFAQLNETIKQVTDLSARFEFGEMGRTLYNFTWNVFADWYVEMSKEVLYGDDEQAKAAKRVNLAYALDQILRLLHPVMPFVTEKLWLALPHTGKSIVTASYPVANAAFENADATSAMDAIIALIRGVRGIRKEAGAPLKTKVDIIVKLTDPALKPIFEQNFDFIDRFVNSKAFTVGTDVAEPKMAGSAVITGATIFVPLNELIDLDEEKAKLTKDAKKLEQEIARIDKKLNNQGFLSKAPEAVVAEQRTKRSDFEDQLTSTKQRLEQLQQA
>NZ_CP014201.1|WP_064519969.1|436287_437574_+|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MNYTESVAYIHSFPRLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVKAVAFVRTALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALDHQKLLGHTITAIATHKAGIIKPGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTGWPLTPQNIRQGLAASHWPARLEKISDTPLIVIDGAHNPDGINGLVTALKQLFSQPITVIAGILADKDYAAMADKLTAAFSTVYLVPVPGTPRALPEAGYEALHEGRLKDSWQEALAASLNDVPDQPIVITGSLYLASAVRQTLLGGKS
>NZ_CP014201.1|WP_014569577.1|437570_438215_+|HAD-IA-family-hydrolase
MTATVIFDLDGTLVNTEALYLKSNVKAAAVLGLHRTEADFRPLVGSAGPSEAKIIADLVGADHAAWFQQFSTQDVLDQIRSGADFVLPGVDKTLQMLDRMGYRLALATSSAKHYVDVVLAATGWVKRFDPILTGSDVTAHKPDPEIYHVMKTKLPETPAIVVEDTHVGVAAAEGAGLPVVMIPGIGQAPDHKATAILAAITDLPDWLQNHPAFA
>NZ_CP014201.1|WP_005713815.1|438320_438989_+|DNA-repair-protein-RadC
MADATEQPRERLLAHGPQALTDAELLQLIVRAGNQHYPVQEIVSEVLTTYPALRGLAEGDGDSLDHIRGLGAAKRASILAGVELGRRVMRRQSVRYGQIKNSEQLGKTMVSRFAGANQESMLILFLDVKNQIITEQIVAIGTVDSALADPRVVFREALKLSATNLIMVHNHPSGDPSPSQADRDTTTRFQLAAALLGMHLLDHLIIGRQSYYSFARDDPEFN
>NZ_CP014201.1|WP_005684795.1|439127_440129_+|rod-shape-determining-protein
MFGFGSKNIGIDLGTANTLVYVDGKGIVLNEPSVVAKNTQTEEVIAVGEEARDMIGRTPTNIVAIRPMKDGVIADYDTTAAMLKYFMQKALGNGSHPQVMICVPSGVTEVEKRAVIDAAKVAGARDAFVIEEPYAAAIGAGLPVMDPTGSMVVDIGGGTTDVATISLGGIVSSRSIRVAGDKFDEAIINHLRQNFNLLIGERTAEAMKIQIGSASVEKAADIDGMTVRGRDLLSGLPKTIDISATDIASAIHENVLDIITAIKETLEETSPEIAADVIDHGIVLTGGGALLKHLPDVISDETKVPVFIAQDPLDCVAIGTGESLKNIDVLKKR
>NZ_CP014201.1|WP_005684794.1|440216_441077_+|rod-shape-determining-protein-MreC
MQKFFSNKKLIALMIALLVSLGLVAGSIYASNNRNTPPFIQRIANDVVGIGGRLVALPGDFARNGLDDINNLMDTFQENQRLKQQLDNLAQTKVQVQTLKRENKQLKQQLKLNGTLTDYAQISAAVILRTPSDWRNMVVINQGSAAGVKKGMPVMAGSGLIGRVVEVNRTSSKVEMLSTANKSSDRIAAAVETKGEKEVNGIITGYDEKTGDLILGELNTDTAIKKGDEVVTSGLGGMTPKGLLIGKVASVKKDDYGLANTVYLDPAANLNDVTVVTVISRTIKGD
>NZ_CP014201.1|WP_005684793.1|441078_441609_+|rod-shape-determining-protein-MreD
MLNEKHFTGHWWIFLLLLLLLLIDGSLASVLAQWIMQPNFMGTPQLTLLGLVMVTLLVPQEKYITWIAALIGLLFDSFYTGILGINALLFALVIYVVRQIRPYIPHTPIFVGMVYIIALLLYGVASYAANHFIGYGSASVVMLIANHLGPGLTVNLILFVIVYGPLHRLLMNLAEE
>NZ_CP014201.1|WP_014569578.1|441623_442280_+|cell-division-inhibitor
MDSVVLKGRNDSLALHLQDTADFTQIIQTLKTLLGKLYEETPTGDVSYRLETGNRLLTEEQLAQIQAVFEDYPRFSINGITSAVVDKAVVADMVTAKMTHRIGGVVRSGQTIDVMGDVLFLGDLHAGASLCASGNVFVMGKVSGVIQAGSQGDTRAVVVGDLQGASQVRIADVIEIVADHYDPVKPVAYLSELHTMTHTKLAELANLRPRLFKQMEAM
>NZ_CP014201.1|WP_005684791.1|442280_443078_+|septum-site-determining-protein-MinD
MGTALVVTSGKGGVGKTTTSANIGTALALQGKRVVLLDLDIGLRNLDVVMGLSNRIIYDIVDVATGRAKLHQALIKDKRFDDLLYLLPAAQNAEKDALEPDQVVEIVEQLRPDFDFIILDSPAGIEQGFRNATGAADGAIVVTTPEISAVSDADRVVGLLEQRDMPLKPRLIINRIRQNMLADGRSMDIDEITSHLGLDLLGIIVDDDGVIESSNKGEAIVMDPDDLASKGYRNIARRLLGDSVPLMDIRLKKQGFWSKLFHRHH
>NZ_CP014201.1|WP_005684790.1|443668_444325_+|amino-acid-ABC-transporter-permease
MTYIFQILPALLSGVKMTLGIFAITLVGAIPLGLILSVGLIPKPKSLLGKAGKSLLEGYVWVFRGTPLLLQLMFIFYGLPIIGIVFDRFSAALVAFILNYAAYFAEIFRGGFGAIDEGQFEASTVLNMTRWQALRFVVIPQVVKIVLPSIGNEVINLVKDSSLVYVIGLGDLLRAGNIASARDVTLLPLVLVGVIYLLLTLILTFLQKRIEAAFSYYR

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Crispr_ID: NZ_CP014201_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014201_4

445967-446120

Orphan

Consensus_repeat	Method
GACCTGCACATCAAGACCTTGGGCGCAATGACCAAAGTATGGCCATCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014201_4

>merge|NZ_CP014201|4|445967-446120|CRISPRCasFinder
GACCTGCACATCAAGACCTTGGGCGCAATGACCAAAGTATGGCCATCACGCTTGACGCCGCTTGGGTTCTGGTTTATGTCCATAACGCGTTCACCGGCGCAGGGACCTGCACATCAAGACCTTGGGCGCAATGACCAAAGTATGGCCATCACGC

>NZ_CP014201|4|4|445967-446120|CRISPRCasFinder
GACCTGCACATCAAGACCTTGGGCGCAATGACCAAAGTATGGCCATCACGC	TTGACGCCGCTTGGGTTCTGGTTTATGTCCATAACGCGTTCACCGGCGCAGG
GACCTGCACATCAAGACCTTGGGCGCAATGACCAAAGTATGGCCATCACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014201.1\|WP_005684795.1\|439127_440129_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP014201.1\|WP_005713815.1\|438320_438989_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP014201.1\|WP_014569587.1\|455090_456182_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|234825
NZ_CP014201.1\|WP_014569585.1\|452716_453682_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP014201.1\|WP_005688309.1\|446273_447707_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_CP014201.1\|WP_005684791.1\|442280_443078_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NZ_CP014201.1\|WP_014569582.1\|449240_450182_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
NZ_CP014201.1\|WP_005689139.1\|448298_448631_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_005713817.1\|447788_447908_-\|DUF4044-domain-containing-protein	unknown	unknown	gnl\|CDD\|338651
NZ_CP014201.1\|WP_014569577.1\|437570_438215_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|273662
NZ_CP014201.1\|WP_014569579.1\|444336_444975_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP014201.1\|WP_014569586.1\|453710_455090_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|235041
NZ_CP014201.1\|WP_005685573.1\|448806_449238_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|234728
NZ_CP014201.1\|WP_005684790.1\|443668_444325_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP014201.1\|WP_014569580.1\|444971_445784_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_CP014201.1\|WP_005684793.1\|441078_441609_+\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
NZ_CP014201.1\|WP_005684794.1\|440216_441077_+\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP014201.1\|WP_005685576.1\|450557_452702_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223839
NZ_CP014201.1\|WP_005685575.1\|450195_450561_+\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|227176
NZ_CP014201.1\|WP_014569578.1\|441623_442280_+\|cell-division-inhibitor	unknown	unknown	gnl\|CDD\|179052

Protein	Function_ID	Function_description	E-value
NZ_CP014201.1\|WP_005684795.1\|439127_440129_+\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP014201.1\|WP_005713815.1\|438320_438989_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	3.20475e-79
NZ_CP014201.1\|WP_014569587.1\|455090_456182_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	8.94365e-153
NZ_CP014201.1\|WP_014569585.1\|452716_453682_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	3.16394e-144
NZ_CP014201.1\|WP_005688309.1\|446273_447707_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	9.01913e-134
NZ_CP014201.1\|WP_005684791.1\|442280_443078_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	5.70372e-132
NZ_CP014201.1\|WP_014569582.1\|449240_450182_+\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	2.56512e-166
NZ_CP014201.1\|WP_005713817.1\|447788_447908_-\|DUF4044-domain-containing-protein	gnl\|CDD\|338651	pfam13253, DUF4044, Protein of unknown function (DUF4044). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 42 and 56 amino acids in length. There is a single completely conserved residue M that may be functionally important.	0.000306794
NZ_CP014201.1\|WP_014569577.1\|437570_438215_+\|HAD-IA-family-hydrolase	gnl\|CDD\|273662	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms: (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created with the knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly related HAD subfamilies caused by an overly broad single model. [Unknown function, Enzymes of unknown specificity].	1.8611e-34
NZ_CP014201.1\|WP_014569579.1\|444336_444975_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.09251e-97
NZ_CP014201.1\|WP_014569586.1\|453710_455090_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|235041	PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.	0
NZ_CP014201.1\|WP_005685573.1\|448806_449238_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	1.62569e-65
NZ_CP014201.1\|WP_005684790.1\|443668_444325_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	9.57353e-65
NZ_CP014201.1\|WP_014569580.1\|444971_445784_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.28261e-124
NZ_CP014201.1\|WP_005684793.1\|441078_441609_+\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.17601e-05
NZ_CP014201.1\|WP_005684794.1\|440216_441077_+\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	2.05192e-78
NZ_CP014201.1\|WP_005685576.1\|450557_452702_+\|penicillin-binding-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	7.05404e-136
NZ_CP014201.1\|WP_005685575.1\|450195_450561_+\|cell-division-protein-FtsL	gnl\|CDD\|227176	COG4839, FtsL, Protein required for the initiation of cell division [Cell division and chromosome partitioning].	2.1083e-13
NZ_CP014201.1\|WP_014569578.1\|441623_442280_+\|cell-division-inhibitor	gnl\|CDD\|179052	PRK00513, minC, septum formation inhibitor; Reviewed.	8.29414e-38

>NZ_CP014201.1|WP_014569580.1|444971_445784_+|amino-acid-ABC-transporter-substrate-binding-protein
MKRRMIMAVMVFLTMAGIVISGCARETVDNSWPRIERTKKVVIGLDDTFVPMGFRQKNGQLAGYDIDLAKAVFKRYGIKADFQTIDWSMKETELKNQTIDLIWNGYSVTPERKAKVAFSNDYLINHQIVVTKTKSQINTLKDMKGKTLGVQTGSSGAFDLDAQPKLLKNMIANKTPILYDTFNDAFIDLDAGRIQGILMDEVYARYYIAHKPDPASYHIIGDSFPPEQFAVGMRKSDHVLREKINAGLKALKADGTIAKLQKKWFGKVEQ
>NZ_CP014201.1|WP_014569579.1|444336_444975_+|amino-acid-ABC-transporter-ATP-binding-protein
MLELKNISKAFNGRPVLKDVNVKIEDGKTLAIVGPSGAGKTTLLRIISGLESADGGTMIWNGQPTTAQALRKQGVIGVVFQNFELFPNLSVMRNITLAPTLQGVDQQKADATAKKLLNQLELSDQAQAYPYSLSGGQKQRVAIARALALNPQILLYDEPTSALDPMLRDNVAAMVNQFKASGMTQVVVTHDMDFAQSVADTTYHVGKGGDGQ
>NZ_CP014201.1|WP_005684790.1|443668_444325_+|amino-acid-ABC-transporter-permease
MTYIFQILPALLSGVKMTLGIFAITLVGAIPLGLILSVGLIPKPKSLLGKAGKSLLEGYVWVFRGTPLLLQLMFIFYGLPIIGIVFDRFSAALVAFILNYAAYFAEIFRGGFGAIDEGQFEASTVLNMTRWQALRFVVIPQVVKIVLPSIGNEVINLVKDSSLVYVIGLGDLLRAGNIASARDVTLLPLVLVGVIYLLLTLILTFLQKRIEAAFSYYR
>NZ_CP014201.1|WP_005684791.1|442280_443078_+|septum-site-determining-protein-MinD
MGTALVVTSGKGGVGKTTTSANIGTALALQGKRVVLLDLDIGLRNLDVVMGLSNRIIYDIVDVATGRAKLHQALIKDKRFDDLLYLLPAAQNAEKDALEPDQVVEIVEQLRPDFDFIILDSPAGIEQGFRNATGAADGAIVVTTPEISAVSDADRVVGLLEQRDMPLKPRLIINRIRQNMLADGRSMDIDEITSHLGLDLLGIIVDDDGVIESSNKGEAIVMDPDDLASKGYRNIARRLLGDSVPLMDIRLKKQGFWSKLFHRHH
>NZ_CP014201.1|WP_014569578.1|441623_442280_+|cell-division-inhibitor
MDSVVLKGRNDSLALHLQDTADFTQIIQTLKTLLGKLYEETPTGDVSYRLETGNRLLTEEQLAQIQAVFEDYPRFSINGITSAVVDKAVVADMVTAKMTHRIGGVVRSGQTIDVMGDVLFLGDLHAGASLCASGNVFVMGKVSGVIQAGSQGDTRAVVVGDLQGASQVRIADVIEIVADHYDPVKPVAYLSELHTMTHTKLAELANLRPRLFKQMEAM
>NZ_CP014201.1|WP_005684793.1|441078_441609_+|rod-shape-determining-protein-MreD
MLNEKHFTGHWWIFLLLLLLLLIDGSLASVLAQWIMQPNFMGTPQLTLLGLVMVTLLVPQEKYITWIAALIGLLFDSFYTGILGINALLFALVIYVVRQIRPYIPHTPIFVGMVYIIALLLYGVASYAANHFIGYGSASVVMLIANHLGPGLTVNLILFVIVYGPLHRLLMNLAEE
>NZ_CP014201.1|WP_005684794.1|440216_441077_+|rod-shape-determining-protein-MreC
MQKFFSNKKLIALMIALLVSLGLVAGSIYASNNRNTPPFIQRIANDVVGIGGRLVALPGDFARNGLDDINNLMDTFQENQRLKQQLDNLAQTKVQVQTLKRENKQLKQQLKLNGTLTDYAQISAAVILRTPSDWRNMVVINQGSAAGVKKGMPVMAGSGLIGRVVEVNRTSSKVEMLSTANKSSDRIAAAVETKGEKEVNGIITGYDEKTGDLILGELNTDTAIKKGDEVVTSGLGGMTPKGLLIGKVASVKKDDYGLANTVYLDPAANLNDVTVVTVISRTIKGD
>NZ_CP014201.1|WP_005684795.1|439127_440129_+|rod-shape-determining-protein
MFGFGSKNIGIDLGTANTLVYVDGKGIVLNEPSVVAKNTQTEEVIAVGEEARDMIGRTPTNIVAIRPMKDGVIADYDTTAAMLKYFMQKALGNGSHPQVMICVPSGVTEVEKRAVIDAAKVAGARDAFVIEEPYAAAIGAGLPVMDPTGSMVVDIGGGTTDVATISLGGIVSSRSIRVAGDKFDEAIINHLRQNFNLLIGERTAEAMKIQIGSASVEKAADIDGMTVRGRDLLSGLPKTIDISATDIASAIHENVLDIITAIKETLEETSPEIAADVIDHGIVLTGGGALLKHLPDVISDETKVPVFIAQDPLDCVAIGTGESLKNIDVLKKR
>NZ_CP014201.1|WP_005713815.1|438320_438989_+|DNA-repair-protein-RadC
MADATEQPRERLLAHGPQALTDAELLQLIVRAGNQHYPVQEIVSEVLTTYPALRGLAEGDGDSLDHIRGLGAAKRASILAGVELGRRVMRRQSVRYGQIKNSEQLGKTMVSRFAGANQESMLILFLDVKNQIITEQIVAIGTVDSALADPRVVFREALKLSATNLIMVHNHPSGDPSPSQADRDTTTRFQLAAALLGMHLLDHLIIGRQSYYSFARDDPEFN
>NZ_CP014201.1|WP_014569577.1|437570_438215_+|HAD-IA-family-hydrolase
MTATVIFDLDGTLVNTEALYLKSNVKAAAVLGLHRTEADFRPLVGSAGPSEAKIIADLVGADHAAWFQQFSTQDVLDQIRSGADFVLPGVDKTLQMLDRMGYRLALATSSAKHYVDVVLAATGWVKRFDPILTGSDVTAHKPDPEIYHVMKTKLPETPAIVVEDTHVGVAAAEGAGLPVVMIPGIGQAPDHKATAILAAITDLPDWLQNHPAFA
>NZ_CP014201.1|WP_005688309.1|446273_447707_+|cardiolipin-synthase
MWLGLIVGGLYIINAFIAIVTVFRSHRDISAVWAWLLVLLLLPFVGFLIYFVFGRKLRADRMQDLMTQRLLGINDLVVQQQEALAAGQPLIGTPGSGGVSELVRTLLRADDALVTTHNEVQVLSLREAFFKQLFEDIGLATEHIHIEAYTIQPDAVGRQLRDLLIEKAQAGITVRVLYDTFGSHGLPISFWKGLTAAGGQVERFVATKLGRWNPRINFRNHRKLIVIDGHLAYLGGFNLGKEHRGLPTLRDTQLRIQGKAVAVIQARFLMDWNGTSKKQQVKDVDVLFREPVVTGNTTMQIVAGGPGQQVEAIKLGYLGLINQAKRSIWIESPYFVPDDSLLDALTIAANAGVDVRIMVPKKTNQSLMAKASQFYLNQVVANGGQAFLYEEGFLHAKTIVVDGKYVSTGTANFDIRSFKLNFEVAAFLYDHHLGKTFQKLFLADMERAMPYTQKVIKAKKRPARLAEELSRLLAPIL
>NZ_CP014201.1|WP_005713817.1|447788_447908_-|DUF4044-domain-containing-protein
MQKKKKSKFQKMTIISAWVMIIITVLGVVLTALASLQII
>NZ_CP014201.1|WP_005689139.1|448298_448631_+|hypothetical-protein
MVLLALGLPILVWLLVVAAVVYFDFHGGSWFFLLTMVNLWAIFELTFTKSPNFIWVILFTAMVIALILVVWQVIREYDLIIHRYWRMLTRILSLATTCWWLSGIFIYFMG
>NZ_CP014201.1|WP_005685573.1|448806_449238_+|division/cell-wall-cluster-transcriptional-repressor-MraZ
MLMGEFERSIDAKGRLIIPAKFREQLGASFVLTRGMDGCLFGYPIAEWDKLQAKLATLPLAKKDARTFTRFLFSAATECEIDKQGRINIPKPLFKHAALKKDCVLVGVNTRIEVWDAERWQQFADTAEEDFDDISENLTDFGL
>NZ_CP014201.1|WP_014569582.1|449240_450182_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MTEFKHETVLLKEATAALAVKSDGTYVDATLGRGGHTRQIINQLTNGRLIAFDQDEAAIAAVKRQFGTLPPQLTLVHRNFRDLSAALADLDIRQVDGVLYDLGVSSPQFDDSKRGFSYRFDAPLDMRMDQRQTLDAKTIVNEWPYAELVRIFSRYGEEHFSKQIARRIEQARAQAPITTTFQLVELIKAGIPAKARRTGGHPAKKVFQAIRIAVNDELSALEASLEQALKLINVGGRISVITFQSLEDRLVKTMFKEVSTVQDVPRGLPVVPEAAQPHYQLVNRKPILPSAAELAENHRAHSAKLRVIEKIRN
>NZ_CP014201.1|WP_005685575.1|450195_450561_+|cell-division-protein-FtsL
MLESTARPLVQQPAPKPVHKSAPAPAPHTHIAFSGFEKTMMFACGVLATVVCVVCLFMQNRLSNTQRQYEDLQAQIMKQSQATANLKQEIGELSNSERLDAFAKAHGFKVINGNIRRVDNQ
>NZ_CP014201.1|WP_005685576.1|450557_452702_+|penicillin-binding-protein
MKIFKSKRSTNAHPARNRKFFGIGLIGFTLLVLGGFVLRFSFVATIGEVDSNNLAKQRQKQYQTDTVLQAQRGAILDRSGNVIAEDSNTYTIYAILDKQNKNGDKPDYVTNKAKTAKILSRYLAIGEDKVLARLNPSKNLFQVEFGRPGTKLSLAIKKQIEAEKLPGIHFRETPSRLYPNGVFASHVIGLAQAQDNGGGLTGVMGLEKQFNTVLTGTNGYRRSETDAYGYKLPNAKTKAKAPVNGGSVYTTLDSGLQAYLETLMTDVQTKYEPKGMTAVLMNAKTGRILAATQRPTFDASTGEGLGDMWRDSLVEDNYEPGSVMKIMTLAAAIQSGKYHPNEYFQSGSVKLDGGTVNDWRTGGWGSIPLSKAFPLSSNVGMVKIEQEMGAGIWKSYLDKFKFGQKTGITLPGETSGRISFQRPLDQAITAFGQGIEVNVMQMMQAISAVANDGKMLKPQIVSKVVNKNGKATVYKPEVVGQPISKETAAQVIDAMRHVVNDEDGTGVAYKMPGVDLAVKTGTGQIASAQGGYLTGDSNYTFSVAGIAPASNPKYVLYVAMKQPQKMTEPAESILASIFKPMMQRALDTTANSTVSGETNTAEVPAVTNAALASAQDTVKKAGFDVATIGTGNKIVQQLPASGTKALRDSRVLLLTNGAMTMPDLTGWSKSDVLKFVQLTGKKFKLVGDGFVVRQSIAKGTLLGNASGTIEFKQQ
>NZ_CP014201.1|WP_014569585.1|452716_453682_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MQLAQMLIPMVSAFAITIMFMPLFIGYMRYKKEGQVIREEGPSWHEKKSGTPTMGGLIFIAAIIISAIWVSIWQHQLTLSVWISLFILVLYGLLGFYDDFQKLVHHRNEGLKAWQKLAGQIFGAVIFLIAYFHEGFDHTLWVPVLGNVNATWFYVIFVVFWLVGFSNAVNLTDGLDGLVAGQTTISFATYAVIAVREGRVDVLIICLVTVGAMLGFLMFNHKPAQIFMGDLGSLALGGMLAVVAILLHREWSLLLIGIIYVIETASVILQVASFKLTGKRIFLMSPIHHHFEMKGWSEWQIDLTFWLVGLIASCVYLVFFL
>NZ_CP014201.1|WP_014569586.1|453710_455090_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MKNISDYRNKKVLVLGLAKSGVNAARLLHKLGALVTVNDKKQFDDNKEAQELLADGMRVITGRHPVELLDEHFELMVKNPGIPYSNPMVQRAQELGLPIITEPELAFQVSEAEWIGITGTNGKTTTTTLIGLMLNQQWPHHAFDAGNIGIPVSQVAQKAGKEDTIVAELSSFQLCGIKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQAQIVPFSRKQAAGARASLIDGWLTFDGDKIMPASDLQIPGLHNIENALAAIAAAKLKGVSDDAIREVLRTFSGVKHRIQYLETINGRRVYNDSKATNVEAATVALNAFQQPIVWLAGGLDRGLPMDALTPLVKKHVKSMVVFGQTASLMAKIAKDAGVPVQKTENVMTAVPLAYEASRPGDVILLSPAAASWDQYPNFEVRGDDFIKAVHSLQQNLESEGH
>NZ_CP014201.1|WP_014569587.1|455090_456182_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MRLVISGGGTGGHIYPALALIEALKAEGKLDDVLYVGTQRGLESRIVPATGLKFATLDLQGFKRSLSLSNVTTVKKFIGSLGQAKKLLRDFKPDIVVGTGGYVSGAILYAAARLHIPTVIHESNSVAGVTNKFLSHFVDRVAIVFPEVASSFPAKKVVVTGNPRAQQVAGLKPNDRLKDFGLDPHKRTLLIFGGSRGAPKINAAAVAALPVWAKADFQVLFATGRSHYDAINAGLPALPASIKVVPYIDDMPSILPDIGLLISRAGATTLAEITALGIPAILIPSPNVTHHHQYLNAQSLTKKGAALTITEPELNQNFPQRVVTLMEDDAKRAAMAQASKRLGVPDASDQLIAVMTTLLTKRG

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Crispr_ID: NZ_CP014201_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014201_5

722357-722467

Orphan

Consensus_repeat	Method
AGTCGTAGCAATCTCCATGTAAGGACCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014201_5

>merge|NZ_CP014201|5|722357-722467|CRISPRCasFinder
AGTCGTAGCAATCTCCATGTAAGGACCTTGAACCCAAATGGCCAAAGCCCCAGCCTGGATGCTGCTGCGAAAACGCGCTCAAAGTCGTAGCAATCTCCGTGTAAGGACCTT

>NZ_CP014201|5|5|722357-722467|CRISPRCasFinder
AGTCGTAGCAATCTCCATGTAAGGACCTT	GAACCCAAATGGCCAAAGCCCCAGCCTGGATGCTGCTGCGAAAACGCGCTCAA
AGTCGTAGCAATCTCCGTGTAAGGACCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014201.1\|WP_077069389.1\|726040_728266_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP014201.1\|WP_077069391.1\|729177_729906_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP014201.1\|WP_077069392.1\|729944_730889_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NZ_CP014201.1\|WP_005713931.1\|725467_725914_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP014201.1\|WP_077069386.1\|720922_722206_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP014201.1\|WP_077069387.1\|722883_723330_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223611
NZ_CP014201.1\|WP_005687682.1\|730969_731464_-\|DUF3013-family-protein	unknown	unknown	gnl\|CDD\|337951
NZ_CP014201.1\|WP_005687667.1\|716323_717211_-\|deoxyribonuclease-IV	unknown	unknown	gnl\|CDD\|179214
NZ_CP014201.1\|WP_005687663.1\|713032_714019_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NZ_CP014201.1\|WP_077069385.1\|719115_720921_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP014201.1\|WP_005687668.1\|717358_718279_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP014201.1\|WP_005687666.1\|715496_716327_+\|kinase/pyrophosphorylase	unknown	unknown	gnl\|CDD\|377080
NZ_CP014201.1\|WP_005687662.1\|712570_713029_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|376735
NZ_CP014201.1\|WP_005687665.1\|715047_715224_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP014201.1\|WP_005687664.1\|714585_715020_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP014201.1\|WP_077069393.1\|731460_732066_-\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|187726
NZ_CP014201.1\|WP_029607226.1\|718583_719030_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP014201.1\|WP_077069388.1\|724841_725468_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319825
NZ_CP014201.1\|WP_005713934.1\|728816_729140_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_005689542.1\|723417_724740_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407

Protein	Function_ID	Function_description	E-value
NZ_CP014201.1\|WP_077069389.1\|726040_728266_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP014201.1\|WP_077069391.1\|729177_729906_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	2.27824e-68
NZ_CP014201.1\|WP_077069392.1\|729944_730889_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	4.55269e-103
NZ_CP014201.1\|WP_005713931.1\|725467_725914_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	1.63927e-91
NZ_CP014201.1\|WP_077069386.1\|720922_722206_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NZ_CP014201.1\|WP_077069387.1\|722883_723330_+\|hypothetical-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	2.7536e-05
NZ_CP014201.1\|WP_077069393.1\|731460_732066_-\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|187726	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair. Alkyladenine DNA glycosylase (AAG), also known as 3-methyladenine DNA glycosylase, catalyzes the first step in base excision repair (BER) by cleaving damaged DNA bases within double-stranded DNA to produce an abasic site. AAG bends DNA by intercalating between the base pairs, causing the damaged base to flip out of the double helix and into the enzyme active site for cleavage. Although AAG represents one of six DNA glycosylase classes, it lacks the helix-hairpin-helix active site motif associated with other BER glycosylases and is structurally distinct from them.	2.20598e-78
NZ_CP014201.1\|WP_005687667.1\|716323_717211_-\|deoxyribonuclease-IV	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	2.69263e-145
NZ_CP014201.1\|WP_005687663.1\|713032_714019_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	7.1847e-145
NZ_CP014201.1\|WP_077069385.1\|719115_720921_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP014201.1\|WP_005687668.1\|717358_718279_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	4.72247e-59
NZ_CP014201.1\|WP_005687666.1\|715496_716327_+\|kinase/pyrophosphorylase	gnl\|CDD\|377080	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase. This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity.	4.11986e-132
NZ_CP014201.1\|WP_005687662.1\|712570_713029_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|376735	pfam02130, UPF0054, Uncharacterized protein family UPF0054.	9.02318e-51
NZ_CP014201.1\|WP_005687665.1\|715047_715224_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15776e-11
NZ_CP014201.1\|WP_005687664.1\|714585_715020_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	5.09808e-54
NZ_CP014201.1\|WP_029607226.1\|718583_719030_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	1.20087e-88
NZ_CP014201.1\|WP_077069388.1\|724841_725468_-\|HAD-hydrolase-like-protein	gnl\|CDD\|319825	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA. The specific function of Lactococcus lactis YsbA is unknown. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.55535e-68
NZ_CP014201.1\|WP_005687682.1\|730969_731464_-\|DUF3013-family-protein	gnl\|CDD\|337951	pfam11217, DUF3013, Protein of unknown function (DUF3013). This bacterial family of proteins with unknown function appear to be restricted to Firmicutes.	2.30497e-54
NZ_CP014201.1\|WP_005689542.1\|723417_724740_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	8.07012e-64

>NZ_CP014201.1|WP_077069386.1|720922_722206_-|histidine--tRNA-ligase
MNYQRPKGTADILPSQSERWQQVEAVARKIFAQYQYREIRTPIFENVDVFSRSAGDTSDIVTKEMYTFEDKGDRMMALRPEGTAGVVRAYVENKLYGPEYAKPYKVYYMGPMFRYERPQSGRQRQFHQIGVEAFGSDSPVLDAETLALAKQLLEALGAKHLKFVINSLGDPATRKAFHAALVDYLTPFKDELSEDSKVRLVKNPLRILDSKDKHDQEIVADAPSILDYLTPEAQQHFDRVKSLLTGLGIEFEVDATMVRGLDYYNHTIFEVMSDDKVFGGGYTTILAGGRYNGLVEELGGPETPGIGFAMGVERLMLLMQGDQQPVQPDAYIVTIDQGADQEALQMLTALRQQGFTGEMDYMGRKAKGQFKAANKANAKLVLTIGESERAAGTVQVKNMATGQQKAFPQADVLADFSKIYTQVTEAK
>NZ_CP014201.1|WP_077069385.1|719115_720921_-|aspartate--tRNA-ligase
MSKRTCYAGDVNTDYLDQEVTLKGWVQKRRSLGSLIFIDLRDREGIVQLVFSDAIDRDALTVANSVRSEYVVEVQGVVKKRKPQAVNPEMKTGDIEVEVHDITILNKAKTPPFYIEDNVAVTEETKLKYRYLDLRRPEMQKNIFTRAHIMQSVHHYLDDNGFIDVETPTLTASTPEGARDYLVPSRVYPGSFYALPQSPQLFKQLLMGAGFDRYYQIARCFRDEDLRGDRQPEFTQIDLETSFLSAEEIQDITEGLIAQVMHDVKGIDVDLPFQRITWQEAMDKYGSDKPDLRFDMQIQDVSDLVKDSDFKVFAGAVQNGGQVRAIVLPGGAAKYSRKMIDAQQDYIKRFGAKGLAWLKITDDGISGPIAKFFGDGAALTQAVGAHTGDLVLFVADKAKVVADALGYLRTHFGHDLGLIDEKEFRFCWVVDWPLFEYDEGIQRWVPAHHPFTMPNEEDVHLLDTDPHAAHAQSYDIVLNGYELGGGSIRIHNRDIQEKMLKALGFTPERAQKSFGFLLNALDYGFPPHGGLAIGLDRFTMLLTGRDNIRDVIAFPKNSKASEPMTSAPSPVADIQLKDLGIEVRPDVDPEKEHEGDENLTE
>NZ_CP014201.1|WP_029607226.1|718583_719030_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MSDKINRPSKAELKKQLSPEAYAVTQEAATERPFTGQYDNFYEDGIYVDVVSGEPLFSSQDKYDAGCGWPSFTKPITKLAEHRDQSFGMERVEVQSPQAASHLGHVFTDGPAAEGGLRYCINSAALRFIPVAKLEEEGYGKYRQLFDK
>NZ_CP014201.1|WP_005687668.1|717358_718279_-|YitT-family-protein
MEEIDRLIRRHQNWSRLSAAFFYSICVAVALNMFWEPGGVFASGITGAAQLLATIVRKWFNFNIALPFFSLATTDLFSTGTLLFFLNVPLFVLAWKAIGHRFTLFTFLAVIFSTIMIRVLGVLTPLTKDPIVCGIFGAVVNGLGTGFALRNNISTGGIDILGIVLRKRTGRTVGTINIMFNVLIIFFAGFVNDWPHALYSALAIFINGRVMDSLYTRQQRLQVMIVTARPKQVVREIQGSLRRGITIVHDAEGAFHHEEKTILFTIISRAEMYDLEQAMRHSDPYAFVSITDSVKILGHFYEPKTD
>NZ_CP014201.1|WP_005687667.1|716323_717211_-|deoxyribonuclease-IV
MLIGANVSMKGTKMLLGAVEEAASYEANTLQFYTGAPQNTRRKPTSEMRIPEGLAAMAKDDISHPVIHAPYIVNLGNTKKPANFEFAVQFMQEEVARADALHAYTMPFHPGAHVGAGPEAAIAQIVKGLNRIIDPNQHVTIALETMAGKGTEIGRSFEELAAIIDGVTYNDKLRVTFDTCHTNDAGYDVKDDFDGVLNEFDHIIGIDRLSVIHVNDSKNPQGSHKDRHANIGFGAIGFEALNRIAHHPALEKLPKILETPYVGPDKKHQVPPYGAEIKWLKTGHFQPEELRKLMA
>NZ_CP014201.1|WP_005687666.1|715496_716327_+|kinase/pyrophosphorylase
MTQELNLYIMSDSVGETGLRLAQAVAAQFPEFEAHYVRFPFIHTKEKIYSAIDEAKKENALAIMTFVTDGFAQLATHYAKDQGVIAIDVMSPILSGIKSITHEEPNHVPGAVHDLNERYFDRISAMEFAVLYDDGKDPKGFLEADIVLLGVSRTSKTPLSLFLANRNLKVANLPLVPNAHIPEEIWQVDPKKIVGLTTDASVLMEFRRQRMIQYGLNPDTAYSARDQVNQELKFAEDLYKKIGCMVINTAHRSIEETATLILEHMGLDEFDNTETH
>NZ_CP014201.1|WP_005687665.1|715047_715224_-|30S-ribosomal-protein-S21
MAKTVVKKNESLDDALRRFKRTVSKSGTLAEYRKREFYEKPSVRRKLKSEAARKRKKY
>NZ_CP014201.1|WP_005687664.1|714585_715020_-|GatB/YqeY-domain-containing-protein
MDELNAQMKQSMLAKDKVTLSVVRMLKTALVNEKIKLGHDLSEDEEKSVLATELKQRKESVSEFKKGGRSDLVEATEAEIKVVERFLPAQLSKDQVADIVDATIKEVGATGKQDFGKVMKTLMPKVKGQADGALVSSVVKEKLS
>NZ_CP014201.1|WP_005687663.1|713032_714019_-|PhoH-family-protein
MAQETSEKIFRFSNPDMAINLVGINDANLTLIEEGLNVRISPFGDELRISGETEAVSLTLQLLEAATKLLAQGIKLSPQDIASAVAMAKRGTLEYFADMYSETLLRDAKGQPIRIKNFGQRQYVDAIKHNDITFGIGPAGTGKTFLAVVMAVAAMKAGQVERIILTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYAVLGKEHTDRLMDRGVIEIAPLAYMRGRTLDNAFAILDEAQNTTQAQMKMFLTRLGFGSKMIVNGDVTQIDLPHNAKSGLLQAEQLLKGISHIAFTQFSAQDVVRHPVVAKIIEAYGKHDLQLQKQTKE
>NZ_CP014201.1|WP_005687662.1|712570_713029_-|rRNA-maturation-RNase-YbeY
MDLEFYDDDHLLDDQHHELIQKLVAFCGQQLALPNDTEMSITIVGDDAIQKINREYRDTDRATDVISFAIEDGEDDLPLLPGMAKNIGDLFIDPLTVRRHAKEYGHSFERELGYTVVHGFLHLNGYDHIKPEDEAVMIPLQKKILTAYGLTR
>NZ_CP014201.1|WP_077069387.1|722883_723330_+|hypothetical-protein
MWQDDRIQAALDGQNPMVMAELPGGFAVFGDVQFLPGYSVLLPKREVGSLNELSKREQSLFLQSMATLGDAILTACEPLRVNYDILGNTDHFLHAHVFPRYQSEAPEHLAKPVWLYDPSYWRDPQYQYEPSQHDAIRQRITAALKTTN
>NZ_CP014201.1|WP_005689542.1|723417_724740_+|N-acetylmuramoyl-L-alanine-amidase
MKHIGQLKKWPLVILLALLFGVGAATTSVMANTQYMTVKAESVNVRLGPGLAYGIMGQVKSGNELTIIGSKNSWYQVRLAGNKIGWVASWLVDQSEAATTSAKVATVNQPVNVREYASQDAKQLGTLNAGDSVKVVYQEGDWTQIAYNNTAAWITSSSVQLTGQTTNLAQPAQANLTQAKSGAALKVTTNTMTNLRNAAGINAPSVEKLDKGTELTVTKQQDDWYQVTAPDGKSGYVASWTVTAPNNGQTQKAATKLSEATIVLDPGHGGTDTGAPANNNHDYEKTYTLKTAELVANALRAAGANVIMTRTTDTFVDLAPRPTTANNAHADAFISFHFDSSPSKNSASGFTTYYYSSKKDLALAKAVNNAFDDLPLENRGVAFGNYEVLRDNKQPAILNEMGYINNDKDFKYIKNPTYQSKIATDIVNGLNAYFKAGHHQ
>NZ_CP014201.1|WP_077069388.1|724841_725468_-|HAD-hydrolase-like-protein
MLVNAIWDFDGTLYDSYSGMMKALAALVTANGGQIEPKTLYRQVKETSIKQFLTGFGQQVGRSVADLEADYHQRARAYLQDIHPYPEALTVLKAIKAQGGHNLLLTHRDRSAWEILAHDQADTLFLGGVDADLKLPRKPAPDAIQYLLRRFQLNPAVTAMIGDRSLDVDAGINADVKTIYFNVDGLNAAPQADYQVNHLIEIPPLFRK
>NZ_CP014201.1|WP_005713931.1|725467_725914_-|D-tyrosyl-tRNA(Tyr)-deacylase
MRAVVQRSLAAKVTIAGQTVGAIDHGFVVLLGVGPEDTSADSDYLAEKISKLRVFSDDAGKMNLALADVGGQVLSISQFTLYADTRHGNRPSFTGAAKPALGEQLYDAFNTKLRDLGVMVATGEFGGDMQVSLTNDGPVTILFDTEAK
>NZ_CP014201.1|WP_077069389.1|726040_728266_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MAEEVELTQPDVMKLCKAYMNPEHLAFVEKAYKFAAYVHKDQVRKSGEPYIIHPIQVAGILAELKMDPETVASGYLHDVVEDTNITLGDIEEVFGHDVAVIVDGVTKLSKVTYVAHKDELAENHRKMLLAMAKDLRVIMVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPLADRLGISTIKWELEDLSLRYLNPQQYYRIAHLMNSKRTEREAYIQEAIEEIKKALADLHIKYEIYGRPKHIYSIYKKMRDKHKQFDELYDLLAIRVITETIKDCYAVLGAIHTKWKPMPGRFKDYIAMPKANLYQSIHTTVIGPMGKPLEVQIRTEEMHHVAEYGVAAHWAYKEGQTSKVQYDKAGKKLDIFREILELQDESSDAADFMESVKGDIFTDRVYVFTPKGDVYELPKGSNPLDFGYLIHTEVGNHTVGAKVNGKIVPLNYVLKNGDIVEMLTASGSAPSRDWIKLVYTSRARNKIKRYFKQVDKSENAEKGRDMLEHELQEEGYVPKDFMTKENMTGLMQRLNFQTEDELMSSIGYGEYTPKVIANRLTEKFRHAKAEKDRKAKEAAILSKNQKVTTVSSEKHQPQTHSEDGVVIEGVDNLLVHLAKCCMPVPGDAIVGYVTKGRGVTVHRADCPNVQSSREMSGRLIDVRWENEAVQKQLFNTDLEIYGYNRSGLLNDVLQVLNAQTKALNNINGRVDHDKMADIHVKVGVRNLAHLDKLMDAVKNVPDIYEVKRANG
>NZ_CP014201.1|WP_005713934.1|728816_729140_-|hypothetical-protein
MSRVMNWVKVPRNKVVCWSVLITLIVPWVFPLFHISTAVRVGVLFILINMLSALWIGRTIRRHHLSWWWLFVLPVLFTLMVFLRYKWYAYFFAPIYLLLGVLAMAKD
>NZ_CP014201.1|WP_077069391.1|729177_729906_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRFFTEHLLHSQQTVTLEPAIAKHAIKVLRYDVGAVFELADPKHRVYQATVQITDPLTVEIGPEITKNVELPIAVEVVCGVSKGDKAEWIVQKATELGAAKIGFFNAQWGTARWPAERIAKKMDRLATIAQNAAEQSHRNLVPEVTMYAKLSDVGVDAAVKLVAYEESAKQGEHAALVSALTPHPASLCVVFGPEGGISPAELALLRAHGFTPAGLGPRILRTETAPLYLLSAVSVLTELA
>NZ_CP014201.1|WP_077069392.1|729944_730889_-|50S-ribosomal-protein-L11-methyltransferase
MNNDWTALTVTTSTEAVEAVSNILMEAGAVGIQIKDAADFKKETIDAHGTWFDPATVPHLATGAQVIGYFEPATSLIEKRDHLASQVKALAQFGLDPGAATVTLADVRQQDWADVWKKYYHPLRVSRFLTIVPKWEHYTPQQPDELVLTLDPGMAFGTGTHPTTQLMLSLLESLVRGGETMIDVGTGSGILAIAAERLGVSQILATDVDEIAVKNAQANIALNPVSHITVKANDLLQGLTVSADLIVANILAEVLVPLIPQVPSRLNPHGHFLLAGIIAEKAGLIRQTLQDNGFTIAQRRYAGGWVAFDAVLKA
>NZ_CP014201.1|WP_005687682.1|730969_731464_-|DUF3013-family-protein
MSQMNMLDAIGDKMDQLDFDGDLSLNWDKDAHVIELEITMTAESESGVEVEDQTGTTVDDGPVTYQDAILFYDETRLHGADYADDYLAIFGFNGKKGIDVATVNALFIYLQDLLDDGQSDLMDFVDGTSDDDTFALNFDEARYEAILAEQPDADNRIFLPYPKY
>NZ_CP014201.1|WP_077069393.1|731460_732066_-|DNA-3-methyladenine-glycosylase
MILPWLETQSTLDSARQLLGMKLSLGACSGLIVETEAYLGARDQAAHAFNHRHTTRNHSLFLAAGTVYVYRMRQYCLLNIVTQPADVPECILIRALEPISGLAIMQTRRKQIGIGLTNGPGKLCQALAIDKQLDGTVLNQSGLSLVPTDHRPRNIAVGPRIGIPNKEPWTSAPLRFYVAGNPFVSKIPRRDQDLEMRGWQS

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Crispr_ID: NZ_CP014201_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014201_6

1389288-1390446

TypeII

Consensus_repeat	Method
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CRISPRCasFinder
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CRT
TGTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	PILER-CR
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	PILER-CR

17 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP014201_6

>merge|NZ_CP014201|6|1389288-1390446|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
TCACTGAAGGTTTTTGATCTGACATCTACCTGAGACTGCCGCGTCGATCTTTGTCAATACCCGAGTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACTCACCGACTGTCAGCGCCAGTTCTTCGCCTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACAATACACCGTAATCAATTTCTTTCAGGGCTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACACAACATCCAAGTGGTATCATTCTAAACGTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAAGAAGAGTGATATTGCTTCCATGACACTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAGGCGACTGATGACAAGTCTCTTATGCTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTACCAAGCCTGATGGCGATGCCATTCAAGAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAGTAAGCAAATCAATGACAATAAGAATGGGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACATCATCGTCTTCAAATCCGCAAGTGTTACCGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTGGCGGCTGCCAAATCTGCAATGCTACTTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTGAGACGTCTTCCGTGGCTCAAGCAAGGCGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGATGCAGCGCATCAATCGCGGCTTGTGCTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGCACAGTGAATGTGATGCCGCATAGCAAAGGCTCTTAAACTGATTGATCTGACATCTACCTGAGACTCTATTTCTGGAATTAACGTCATCGGTAGGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCCTGGACGTTCGAATGCATAGAGCTGGTCGAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCGTATTTTTCGGTCAAGTTCAGCCAACGTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGAACAGCAGAAGACATCACAATCAACACTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NZ_CP014201|6|6|1389288-1390446|CRISPRCasFinder
TCACTGAAGGTTTTTGATCTGACATCTACCTGAGAC	TGCCGCGTCGATCTTTGTCAATACCCGAGT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCACCGACTGTCAGCGCCAGTTCTTCGCCT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AATACACCGTAATCAATTTCTTTCAGGGCT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACAACATCCAAGTGGTATCATTCTAAACGT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGAAGAGTGATATTGCTTCCATGACACTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGGCGACTGATGACAAGTCTCTTATGCTG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TACCAAGCCTGATGGCGATGCCATTCAAGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGTAAGCAAATCAATGACAATAAGAATGGG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ATCATCGTCTTCAAATCCGCAAGTGTTACC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGGCGGCTGCCAAATCTGCAATGCTACTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAGACGTCTTCCGTGGCTCAAGCAAGGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GATGCAGCGCATCAATCGCGGCTTGTGCTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCACAGTGAATGTGATGCCGCATAGCAAAG
GCTCTTAAACTGATTGATCTGACATCTACCTGAGAC	TCTATTTCTGGAATTAACGTCATCGGTAGG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCTGGACGTTCGAATGCATAGAGCTGGTCGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGTATTTTTCGGTCAAGTTCAGCCAACGTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GAACAGCAGAAGACATCACAATCAACACTG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NZ_CP014201|6|1|1389288-1390446|CRT
TCACTGAAGGTTTTTGATCTGACATCTACCTGAGAC	TGCCGCGTCGATCTTTGTCAATACCCGAGT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCACCGACTGTCAGCGCCAGTTCTTCGCCT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AATACACCGTAATCAATTTCTTTCAGGGCT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACAACATCCAAGTGGTATCATTCTAAACGT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGAAGAGTGATATTGCTTCCATGACACTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGGCGACTGATGACAAGTCTCTTATGCTG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TACCAAGCCTGATGGCGATGCCATTCAAGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGTAAGCAAATCAATGACAATAAGAATGGG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ATCATCGTCTTCAAATCCGCAAGTGTTACC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGGCGGCTGCCAAATCTGCAATGCTACTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAGACGTCTTCCGTGGCTCAAGCAAGGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GATGCAGCGCATCAATCGCGGCTTGTGCTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCACAGTGAATGTGATGCCGCATAGCAAAG
GCTCTTAAACTGATTGATCTGACATCTACCTGAGAC	TCTATTTCTGGAATTAACGTCATCGGTAGG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCTGGACGTTCGAATGCATAGAGCTGGTCGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGTATTTTTCGGTCAAGTTCAGCCAACGTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GAACAGCAGAAGACATCACAATCAACACTG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NZ_CP014201|6|1|1389353-1389587|PILER-CR
TGTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCACCGACTGTCAGCGCCAGTTCTTCGCC
TGTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AATACACCGTAATCAATTTCTTTCAGGGC
TGTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACAACATCCAAGTGGTATCATTCTAAACG
TGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAAGAAGAGTGATATTGCTTCCATGACACTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAGGCGACTGATGACAAGTCTCTTATGCTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TACCAAGCCTGATGGCGATGCCATTCAAGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGTAAGCAAATCAATGACAATAAGAATGGG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ATCATCGTCTTCAAATCCGCAAGTGTTACC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGGCGGCTGCCAAATCTGCAATGCTACTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAGACGTCTTCCGTGGCTCAAGCAAGGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GATGCAGCGCATCAATCGCGGCTTGTGCTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCACAGTGAATGTGATGCCGCATAGCAAAG
GCTCTTAAACTGATTGATCTGACATCTACCTGAGAC	TCTATTTCTGGAATTAACGTCATCGGTAGG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCTGGACGTTCGAATGCATAGAGCTGGTCGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGTATTTTTCGGTCAAGTTCAGCCAACGTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GAACAGCAGAAGACATCACAATCAACACTG


>NZ_CP014201|6|2|1389684-1390446|PILER-CR
	TCACCGACTGTCAGCGCCAGTTCTTCGCC
TGTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AATACACCGTAATCAATTTCTTTCAGGGC
TGTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACAACATCCAAGTGGTATCATTCTAAACG
TGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAAGAAGAGTGATATTGCTTCCATGACACTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAGGCGACTGATGACAAGTCTCTTATGCTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TACCAAGCCTGATGGCGATGCCATTCAAGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGTAAGCAAATCAATGACAATAAGAATGGG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ATCATCGTCTTCAAATCCGCAAGTGTTACC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGGCGGCTGCCAAATCTGCAATGCTACTTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAGACGTCTTCCGTGGCTCAAGCAAGGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GATGCAGCGCATCAATCGCGGCTTGTGCTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCACAGTGAATGTGATGCCGCATAGCAAAG
GCTCTTAAACTGATTGATCTGACATCTACCTGAGAC	TCTATTTCTGGAATTAACGTCATCGGTAGG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCTGGACGTTCGAATGCATAGAGCTGGTCGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGTATTTTTCGGTCAAGTTCAGCCAACGTT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GAACAGCAGAAGACATCACAATCAACACTG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014201.1\|WP_046782744.1\|1378632_1380081_-\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|236580
NZ_CP014201.1\|WP_049173300.1\|1384924_1386619_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NZ_CP014201.1\|WP_005684670.1\|1404059_1405484_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP014201.1\|WP_077069533.1\|1380099_1381935_-\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919
NZ_CP014201.1\|WP_077069534.1\|1395230_1399322_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP014201.1\|WP_070543786.1\|1390605_1392024_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP014201.1\|WP_046782746.1\|1382302_1383175_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP014201.1\|WP_014569978.1\|1399602_1401330_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP014201.1\|WP_049173297.1\|1388750_1389239_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP014201.1\|WP_014569980.1\|1403049_1404063_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP014201.1\|WP_015765029.1\|1393159_1393840_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP014201.1\|WP_014569979.1\|1401310_1403053_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NZ_CP014201.1\|WP_049173193.1\|1394119_1395025_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP014201.1\|WP_015765030.1\|1393836_1394142_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP014201.1\|WP_046782747.1\|1383306_1384932_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP014201.1\|WP_049173196.1\|1405715_1407020_-\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NZ_CP014201.1\|WP_005692554.1\|1376676_1377321_+\|ABC-2-transporter-permease	unknown	unknown	gnl\|CDD\|379133
NZ_CP014201.1\|WP_049173299.1\|1386830_1387256_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NZ_CP014201.1\|WP_049173298.1\|1387442_1388543_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_077069532.1\|1377386_1378172_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181585

Protein	Function_ID	Function_description	E-value
NZ_CP014201.1\|WP_046782744.1\|1378632_1380081_-\|family-1-glycosylhydrolase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP014201.1\|WP_049173300.1\|1384924_1386619_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	2.62821e-89
NZ_CP014201.1\|WP_005684670.1\|1404059_1405484_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP014201.1\|WP_077069533.1\|1380099_1381935_-\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP014201.1\|WP_077069534.1\|1395230_1399322_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	9.06651e-118
NZ_CP014201.1\|WP_070543786.1\|1390605_1392024_+\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.43747e-13
NZ_CP014201.1\|WP_046782747.1\|1383306_1384932_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.69713e-96
NZ_CP014201.1\|WP_014569978.1\|1399602_1401330_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	1.18641e-159
NZ_CP014201.1\|WP_049173297.1\|1388750_1389239_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.00562e-07
NZ_CP014201.1\|WP_014569980.1\|1403049_1404063_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	1.16785e-90
NZ_CP014201.1\|WP_015765029.1\|1393159_1393840_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	9.75483e-69
NZ_CP014201.1\|WP_014569979.1\|1401310_1403053_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP014201.1\|WP_049173193.1\|1394119_1395025_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.83521e-93
NZ_CP014201.1\|WP_015765030.1\|1393836_1394142_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.60312e-22
NZ_CP014201.1\|WP_046782746.1\|1382302_1383175_-\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	3.43702e-43
NZ_CP014201.1\|WP_049173196.1\|1405715_1407020_-\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP014201.1\|WP_005692554.1\|1376676_1377321_+\|ABC-2-transporter-permease	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.000320345
NZ_CP014201.1\|WP_049173299.1\|1386830_1387256_-\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	3.17146e-35
NZ_CP014201.1\|WP_077069532.1\|1377386_1378172_-\|SDR-family-oxidoreductase	gnl\|CDD\|181585	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.	1.00156e-172

>NZ_CP014201.1|WP_049173297.1|1388750_1389239_-|GNAT-family-N-acetyltransferase
MSKAKLILSPAFYTDLKEIRHMYQQAFKSLYGKYQDRETNPYCESLKSLQKKFKRPNNAFFFITVEDKHIGLIRVVTDRKNSAARISPFLILPFYQGKGYAQLGLQLIEEQFPLIQTWYVDTIAEEPKLVHLYRKVGFQQLPDRETTINEHMHIIYFVKVRS
>NZ_CP014201.1|WP_049173298.1|1387442_1388543_-|hypothetical-protein
MKKVAIIGATLLLSIGLVACSGGSGSSSSKSNSTTSQTSNAKVKIKTGADTNAKVPAAGTLVMRQLYAAPHGKQSFAAVNVTLNGDTIVSARINEFQYVKKSSDWTGVPNSNKDFGKNYPTGQILIAKAENSKPYSALMKKEAKATHTWEENETAITNFVKGKKISDLKAAVTEVKGTKKVSDVVSGATFADTAGYLQAIYDAATTGMVAEGIQTTDTNLTEGQVLAAPHGTQSFGIVTVAMQGDKIANVFLDEFQYMPAKDFGAVPNSNTDFGKGIKAGTVLASKRANSDAYSAIMKSKGKATKTWQENSTAIDEFAKGKTVAELETAVSDLKGKKKASDVVSGATFTDTAGYLAAIIKAAKAAK
>NZ_CP014201.1|WP_049173299.1|1386830_1387256_-|NusG-domain-II-containing-protein
MRWLKRYVRPLDYVIIVLLFIACFIPAGIFSLTEANVKTSQKVAVISVNGQVKRRIKLGAHTRHQQFTLYPAKGQYNIIEVDGERIRDKEDNSPDQIAVHTGWISRIGQQSICLPHKLLIEIKPAQGNHGSNGDAGGLVHP
>NZ_CP014201.1|WP_049173300.1|1384924_1386619_-|ATP-binding-cassette-domain-containing-protein
MFGLLKYGRDQRWAGVIEAIFDWLPTLLPILIALNLGTGHQVAALVTTLVLMAVWLGYVVGYERHHRHAWAMSAKRELRDRYFTALYQRNDAVATTAADHAVIQRDLGGLNNLDMFYSTLFPTILQAGMTFLVLMGLSFWYRSWLALLPFGCVFLIGLAMMFLGKRMSAQNKAHLSGFLKMGGRFMDDLRGMNTLVMYDAADRYAQKFADDSEFFRQATMNLLKTQLQTLFVINGFVYLTVFAGGFITAVQLVAGQLPVAGAFATWFTLAMMMVNARQLGYFVHVVKSNGPSLAAILATIAKAKAAPDTVKITDNRPLSQITLDQVSIGYSADAPLVTGINATLVPGKLYGLAGENGTGKSTLIQAILGRLKPLSGAIMADQTAVSALSNVQQAAVFGYVSANEYLFSGTIQENLLLGNRFGDQWQARLASLGLMQFVPSLEKGYATQVGENGRLLSPGQRQQLAFARMLLADKTVYLLDEITSSIDEANAAVILQAVKKLSRHKIVLFISHDLKVMTQADEVWFIHDHQLTVANHQTLYQEQPAYRQLVDNPEMMENEVNPND
>NZ_CP014201.1|WP_046782747.1|1383306_1384932_-|ABC-transporter-ATP-binding-protein
MIRGLLRYTHHLTGAIFISFLIGMVAELAKVVVLVLAAMMLFDPQNAGQLLLPGLIAIILLGLGSFGEQYSGHYVAFHVLADLRGAVYRQLVRLAPAKLDTQASGKLLKLIGSDIEAMEIFYAHTLVPVAIGLVYGLLVVGIYSQLNWLAAIIALISYVAVGMVVPYARHRQLTAKTQAADRLKAANQQYLLESVRGMAVVRQLGIAKQRMTKGNEGFDQEAAAFQQAQFSQLLKNVAATVVIVGGWLLMIWLSGWQQPTAIQQALLAIFPLTFGPLLALNNLPGSLLNGLAAARNLFNLLQEQPLNAASPNANRVVTAINRIQVDQVSFSYPTRPEEAVLKDVTVTLNAGEIVGFVGASGSGKSTLAKLIMGWYPVSHGQILIDGNDLATIKPTALRNQMNYLPQMPVFFSESVRDNLTLHDPAITDQQIWTVLDQVKLRARLEQMSHGLDTVVAASHVPFSSGEQQRLELARALLHPSSVLVLDEPTSNLDTENERLILETIKTYYHGIVILISHRPESAAFADRVYRFSEHQVVLATE
>NZ_CP014201.1|WP_046782746.1|1382302_1383175_-|PRD-domain-containing-protein
MIIDAILNNNAVVVRRDKRDIIVVERGIGFHAKKGDQLTLQDSMKVYVPEDHAKLKIAMATIASLPDEYLTIAARIIQEAEVQLHTKFNSYLLIELADHIHFAVTRLHEQLILHNKLLWEIQIAYEPAFRMGEWALTEIANQIGEQLPQDEAGFIALKFVSNDLSQQHPVNSVAFTQMLANITKIIFYQLGLNMNAKTPEYQRLVIHLKFFLQRVYATSTAKTPVSPEPYDQALLAHLQQDYTQAYRCMEDVVKFMQQKLPGPISKNEQIYLTLHIARLAKSQGQSLKSS
>NZ_CP014201.1|WP_077069533.1|1380099_1381935_-|PTS-glucose-transporter-subunit-IIA
MGETALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKLEPSLSDGTEGPATVTHEKMTFKRAFNGLLTFVSGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIVALVGKPSIDFFGIPVVAANYTATVLPILLVVVVQKFLEPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYCACVAGAVGGIIVAMSGAGANVASLASILSLPTYLGKGFGVSVIGDVVAFVLGVGLTLAFGGINAPAKNQAAAAVVADYAETLAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEEDVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQYQVETRSDGATDDDALMTLA
>NZ_CP014201.1|WP_046782744.1|1378632_1380081_-|family-1-glycosylhydrolase
MTNLKFPKQFMWGGATAANQLEGAYHEDGKGLSIADVLPQGKDRFAIVNQPDFDWTIDESKYRYPNHLGIDHYHHFKEDIKLFSEMGFKCYRFSIAWSRIFPEGDEQQPNQAGLAFYDALIAECLKYGIEPIVTISHYEMPLHLVTKYGGWKNKALITFYKRFAETVLTRYFKQVKYWMTFNEINSAFSFPVMSQGLVASNGADDKRNIFQAWHNQFVASAWAVKMGHELDPQLQIGCMLLYATTYSYDANPVNQLATLQQNQAFNFFCGDVQVRGEYPAYTDAMMAEYGVKFQELEFSAAELALLKHYPVDYIGFSYYMSAVIETTQEHHAEVGGNLLSGLKNPFLKASEWGWQIDPIGLRIALNQLYDRYRKPLFIVENGLGAIDRPDEKGEVQDDYRIDYLRQHIEQMRAAIHDGVDLMGYTPWGCIDLVSASSGQMSKRYGFIYVDLDDDGEGTLARSKKKSFDWYRRVIASNGADLA
>NZ_CP014201.1|WP_077069532.1|1377386_1378172_-|SDR-family-oxidoreductase
MYRDLNGKVAVVTGGSKGIGAGIAERFGKEHMAVVINYLGDHEGARKTADTVIKNGGQAVSIHADVSTEAGIASLVKTAESEFDRLDVWVNNAGMEIKAPTHEVSLDDWNKVIAINQTGVFLGARAALNYFLDHHQPGNIINITSVHEQIPWPTFASYTAAKGAVKLFTETIAMEYANRGIRVNAIGPGAIETPINAEKFADKAQYDQTVAMIPQGRLGKPEDVAAGAAWLASTESSYVTGTTLFIDGGMTLYPAFKDGQG
>NZ_CP014201.1|WP_005692554.1|1376676_1377321_+|ABC-2-transporter-permease
MRDLVKLVGLDLAVFHTNSKKYFWFGTLISIVLLLLPFLNGDLATPLAGGITGLSIGLLMMPFVGVDRQGMENLYTMLPVRRTTIVAGHYLFGLMTVGLIDACSMLIIGLGWMARVNPIRDSQAFGWMLCFGTALMLFQIILSFPLMIGLGFKRAPLAAYFPLAILLIAVFLERSFQVDLDALKPWFGVIVAIFISAFIFSWWLSTVLYKKREF
>NZ_CP014201.1|WP_070543786.1|1390605_1392024_+|IS5-family-transposase
MVYRHTDVQLSFESFDCGLGTSLSPDNEWVKLASLIPWQKLDEAYQSVFNKSAGRAAKPFRELYGAELIKQRTHLSDAKLVEAIRDTPAFQYFMGRTRYEAKIPFNASTLTYFRRRASKISDLIRNIITDEVREKLEAIVPGAHVLITDATAVPIKIQFPQDASLLNKARLNLEEMVLKMAQGLQVAIPRTYKRLAKATWTEYSRHPGRQAKARRKQIKAQLQYIRRDLRYVDELLSQGGEAHLTEWQINRLAVVRKVYEQQRYMYDNKTHSVPDRIVSLSQPYIHPIVRGKAKARVEFGAKIDCSILDGVIDVERFDFESFNESTDLAATLDHCWDTLGQYPDEVLADTLYRTRANIALCKELGIKLSGPKLGRRPKHVDANQRKLDTDAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVEVDSAIVLANLMLLLGIFSIPISVITHRAGKTYQINYKVITERSKSAA
>NZ_CP014201.1|WP_015765029.1|1393159_1393840_-|type-II-A-CRISPR-associated-protein-Csn2
MNLAYYPFQLITTKPSVITVIDTGLPKVLLDLVQAFRNDDDGIVLSNEQMQIQELRKASLWIGDPVLELDLDKLFQRLIIKKVSQLIEDRRLIELIEQSQRLAMSLLREPLLSELPVTVEPGGKLEQIMKYCNVHFDEEVLTEPFSKVEAAIKTLAKLEEKRLVIFTNISHYLDVDSLNKLLDQVKETSLELLLIEFSDVERRKFFERCQYIYIDKDFMDSRELID
>NZ_CP014201.1|WP_015765030.1|1393836_1394142_-|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVATSKDRRNYRRFRRALIDEGFLMIQYSVYVRVCKTKKSAAYMEQRIATVKPPTGIVQTLMVTEAQYQSMHFMVGTEKQDIRNSADRTVMI
>NZ_CP014201.1|WP_049173193.1|1394119_1395025_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSFIITQHCKVTTKQHSLVVQTNGEVYTMPIDDLNQVIFTTTRALISADAIAALADANAKVIFSGRDGQPVTETKNLYSDRRRAEQVRLQVNWPLDLIETVWTKIVAAKISNQAQVAKLCGHDAQGLLDDLDALEINDVSNREASAARRYFKLMFGDDFSRSDICATNAALNYGYSVLLSTTNRAIVSTGHLTEVGLHHHSASNPYNLGSDLMEPFRPAVDYWVAQHRIKELTPDVKYGLIDLLNLEITFNGKKALLQNAVADHVENCLAFLDGKAKLCRIEVKFPDEVSSHAINDHV
>NZ_CP014201.1|WP_077069534.1|1395230_1399322_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKLNQPYGIGLDIGSNSIGFAVVDANSHLLRLKGETAIGARLFREGQSAADRRGSRTTRRRLSRTRWRLSFLRDFFAPHITKIDPDFFLRQKYSEISPKDKDRFKYEKRLFNDRTDAEFYEDYPSMYHLRLHLMTHTHKADPREIFLAIHHILKSRGHFLTPGAAKDFNTDKVDLEDIFPALTEAYAQVYPDLELTFDLAKADDFKAKLLDEQATPSDTQKALVNLLLSSDGEKEIVKKRKQVLTEFAKAITGLKTKFNLALGTEVDEADASNWQFSMGQLDDKWSNIETSMTDQGTEIFEQIQELYRARLLNGIVPAGMSLSQAKVADYGQHKEDLELFKTYLKKLNDHELAKTIRGLYDRYINGDDAKPFLREDFVKALTKEVTAHPNEVSEQLLNRMGQANFMLKQRTKANGAIPIQLQQRELDQITANQSKYYDWLAAPNPVEAHRWKMPYQLDELLNFHIPYYVGPLITPKQQAESGENVFAWMVRKDPSGNITPYNFDEKVDREASANTFIQRMKTTDTYLIGEDVLPKQSLLYQKYEVLNELNNVRINNECLGTDQKQRLIREVFERHSSVTIKQVADNLVAHGDFARRPEIRGLADEKRFLSSLSTYHQLKEILHEAIDDPTKLLDIENIITWSTVFEDHTIFETKLAEIEWLDPKKINELSGIRYRGWGQFSRKLLDGLKLGNGHTVIQELMLSNHNLMQILADETLKETMTELNQDKLKTDDIEDVINDAYTSPSNKKALRQVLRVVEDIKHAANGQDPSWLFIETADGTGTAGKRTQSRQKQIQTVYANAAQELIDSAVRGELEDKIADKASFTDRLVLYFMQGGRDIYTGAPLNIDQLSHYDIDHILPQSLIKDDSLDNRVLVNATINREKNNVFASTLFAGKMKATWRKWHEAGLISGRKLRNLMLRPDEIDKFAKGFVARQLVETRQIIKLTEQIAAAQYPNTKIIAVKAGLSHQLREELDFPKNRDVNHYHHAFDAFLAARIGTYLLKRYPKLAPFFTYGEFAKVDVKKFREFNFIGALTHAKKNIIAKDTGEIVWDKERDIRELDRIYNFKRMLITHEVYFETADLFKQTIYAAKDSKERGGSKQLIPKKQGYPTQVYGGYTQESGSYNALVRVAEADTTAYQVIKISAQNASKIASANLKSREKGKQLLNEIVVKQLAKRRKNWKPSANSFKIVIPRFGMGTLFQNAKYGLFMVNSDTYYRNYQELWLSRENQKLLKKLFSIKYEKTQMNHDALQVYKAIIDQVEKFFKLYDINQFRAKLSDAIERFEKLPINTDGNKIGKTETLRQILIGLQANGTRSNVKNLGIKTDLGLLQVGSGIKLDKDTQIVYQSPSGLFKRRIPLADL
>NZ_CP014201.1|WP_014569978.1|1399602_1401330_-|thiol-reductant-ABC-exporter-subunit-CydC
MHWLKNEHWIRPDLKRYRWLLFWSLILGIMTFVFAGALMFTSGFLIDKSATKPLFAAIYVTVVLTRAFGVGRPVFQYAERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILGLLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGWFNWGFALWILLLLLFQILILPWWGLVVERFRKAEQKRLNHDAYVSLTDSVLGLSDWVITHRDQDFMKQSLAAPKKLAASTAKSKRFQWGRDFIGQLLFALIAVSMLIWTNLEWTGNQSMANWVGAFVLVVFPLDQAFSGIAQGVGEWPTYRDAIRHLNDLHPVTRELPQQQSVPTTFNKIELNDVSFRYTPSDPELITNIDLTIQAGEKIAILGPSGMGKTTLLQLVLGDLTPTNGHVLIDGQDVLDYQNHRTNLFAVLDQSPFLFNTSIVNNVRLGNEDAGDETVAAALKAVKLDQLVAQLPNGMNSSVEEAGFGFSGGERQRLSLARILLQDAPIVLLDEPTVGLDPITEQALLDTMFTVLKGKTILWVTHHLQGVSQTDRVIFLEDGRLTMNDSPQHLAEQNKRYQNLYALDAGLR
>NZ_CP014201.1|WP_014569979.1|1401310_1403053_-|thiol-reductant-ABC-exporter-subunit-CydD
MIDKTLLRLSGMRKTMTMLAGFALVQAFVILLQGKYLAEGIVHSWNRQSLAGLWLPLGLFAAAFTVRQLIVWVRNRIAAKFAMKSAAWLQAQLLRHLFALGPAAVAKEGTGNLVTMALDGIPEAENYIELILNKILNMSIIPWILVAYIWYENWLTGFTLLIMFPIIILFMVILGLAARDKSESQYAGFQKMSNHFIDSLRGLKTLQLMGISREYANNVYEVSEDYRKQTMGVLRIAMLSTFALDFFTTLSIAVVAVFLGIKLMDGTIPLYPAMVALILAPEYFMPIRDFGTDYHATLNGKNAMTAIWKVIDQPLPTDTHVLPAFKGWQPQDTLSMQHLDFTYADKRAGIQDANLTFTGPEKIAIIGASGSGKSTLLNLIGGFLQPQAADITVRGTKIPHMTQTAWQDHLSYIPQDPYLFADTIAANIRFYRPDASDQAVRDAAESAGLTTWINSLPDGYATRIGEGGRGISGGQAQRIALARTLIDTNRSIWLFDEPTAHLDIETEAALKETLVPLFANRLVIFATHRLHWLNQMDRVIVVDGGKIVAEGTPTELAAHSKPYQALVHEMRGEFNALVEK
>NZ_CP014201.1|WP_014569980.1|1403049_1404063_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MSWLQILWFFLLFVLFSGFFVLEGFDFGVGMSTKLLAHNSDEEDQLVATIGPHWDGNEVWLITAGGAMFASYPMWYASLFSGFYIMFFLVLFGLIVRGVSFEFAAHAETKTGRNIWRWALACGSLIPPFILGMIFTAIIQPLPITKNGDVFPTLGNQINLLTIVGGVAVTLMMLMHGLNFICLKTTGDLRKRARDWNSKLYYLLYAGEVVFAVLLFFMTDFFKERPISTLLILVVIVGSTVAAHIGVLKDNEVLSFIGSALGLVGVVGVIFNGLFPRVMIGQNAAMSILAKDASASPLTLTIMTIVAVILLPIALAYFIWSYVVFHKRIQAKGAVSE
>NZ_CP014201.1|WP_005684670.1|1404059_1405484_-|cytochrome-ubiquinol-oxidase-subunit-I
MLMAMDVLSLARFQFAMTTVFHFFFVPFSIGMGLVAAIMETMYVRKKDETYKKMAKFWGKIFLLSFAVGVVTGIIQEFQFGMNWSNYSRFMGDIFGVPLAIEALLAFFMESTFIGLWMFTWDRFKPAVHAIFIWMTWLGTTLSAIWILSANAFMQHPTGFAISQTTGRVKLVDFGAVITNPQLWVEFPHVIFGAFTTAGFAVAGMAAWRLLKKDHVDFYKKSLKVGLVVGTIASACAIGFGDLQTQFIIKDQPMKFAATEGIYKDTSDPAPWTLVELINTKDHTTSGNIEVPYLLSLLSYHKMNGSVKGMETANKELEAKYGKDKNYYVPVKTLFWSFRVMAGGGVLLFLLGVLGLWFSRKKKDTLLDQRWLLYILGFALWLPFIINTAGWFITELGRYPWVVYGLYTIADAVSPTTTAGQLLFTNICYFLIFTLLGGVMIYYSHRVLKNGPDGDLNTDYGVNSDPFAKEAFAK
>NZ_CP014201.1|WP_049173196.1|1405715_1407020_-|pyrimidine-nucleoside-phosphorylase
MRMVDLITKKRDHGELTDDELTWMIQQYTAEKIPDYQMSAFLMAVYFNGMSAAERDHFAFAMLHSGDVLDLSDIPGIKVDKHSTGGVGDKISIPLAPLVASLGVPVPMISGRGLGHTGGTLDKLESIPGFNVNETEAQFKHQVQTLHQAIVSASRDVAPADRRIYALRDVTGTVESIPLIAGSIMSKKLASGTDALVFDVKVGNGAFMKTSEDARALAKALVSISQSAGVKSVALLTDMNQPLGITIGNSLEIAESIAILKNRGPRDVHDLTVALAAQMLVLGKKAPSLEIATGLAEDALRDGRALNAFKQLIQAQGGDPAVVDDPRKLPQAAYRIPVKAEQSGIVTAIDTNALGVAAMQLGGGRAQKGDTLDLAVGLVLHKKLGTPVTKGDTLVMLHANDQHVDAIVELVLQAYHIGTTAPQKLPLIHEVIRP

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Crispr_ID: NZ_CP014201_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014201_7

1392048-1393139

TypeII

Consensus_repeat	Method
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	PILER-CR
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CRISPRCasFinder
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CRT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	PILER-CR

16 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP014201_7

>merge|NZ_CP014201|7|1392048-1393139|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GCTCTTGAACTGATTGATCTGACATCTACCTGAGACAGGGTTTACAGTGACTAACTGTTTCCCATAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAAAGCTTTTCAAAGTCACTCTCTAACGTGCGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAGTAGCATCGATTAATTACAAGCAAACCGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAGCTGTGTGCCCTTTGCTGTGGTCGAATTAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAGTAGCATCGATTAATTACAAGCAAACCGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAGCTGTGTGCCCTTTGCTGTGGTCGAATTAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTTGGAGCGAAAGCTTCTTTGCCATCATGAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGCTGTGGCCTAAGCAGTGACCAATGATCACGCTCTTGAACTGATTGATCTGACATCTACCTGAGACACGCTGATAAGCCCCAAGAACATCATGGGAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTGTCTTGCTTGTCCGCGAACGCCTTGATCCGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAAATTCATGTCGCAGCTTACCAATCCCAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAAGACTGATAGGTATTCGCGTCTGCTTGTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAGCAAAAAATATTTGGCAGTTGATGCAGAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACACGGGCTTAGACACACTCACGTTTCCTATTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGACTACTAGCCACTTGACTAACCTGCTGCGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCTTTACTTTCACCAATTTCAGTATCAAAATGCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NZ_CP014201|7|3|1392048-1392479|PILER-CR
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGGGTTTACAGTGACTAACTGTTTCCCATA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAAGCTTTTCAAAGTCACTCTCTAACGTGC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTAGCATCGATTAATTACAAGCAAACCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCTGTGTGCCCTTTGCTGTGGTCGAATTA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTAGCATCGATTAATTACAAGCAAACCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCTGTGTGCCCTTTGCTGTGGTCGAATTA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGACTTGGAGCGAAAGCTTCTTTGCCATCATGAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGCTGTGGCCTAAGCAGTGACCAATGATCACGCTCTTGAACTGATTGATCTGACATCTACCTGAGACACGCTGATAAGCCCCAAGAACATCATGGGAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTGTCTTGCTTGTCCGCGAACGCCTTGATCCGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAAATTCATGTCGCAGCTTACCAATCCCAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAAGACTGATAGGTATTCGCGTCTGCTTGTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCAAAAAATATTTGGCAGTTGATGCAGAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACGGGCTTAGACACACTCACGTTTCCTATT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GACTACTAGCCACTTGACTAACCTGCTGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CTTTACTTTCACCAATTTCAGTATCAAAAT


>NZ_CP014201|7|7|1392048-1393139|CRISPRCasFinder
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGGGTTTACAGTGACTAACTGTTTCCCATA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAAGCTTTTCAAAGTCACTCTCTAACGTGC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTAGCATCGATTAATTACAAGCAAACCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCTGTGTGCCCTTTGCTGTGGTCGAATTA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTAGCATCGATTAATTACAAGCAAACCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCTGTGTGCCCTTTGCTGTGGTCGAATTA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTGGAGCGAAAGCTTCTTTGCCATCATGAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCTGTGGCCTAAGCAGTGACCAATGATCAC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACGCTGATAAGCCCCAAGAACATCATGGGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGTCTTGCTTGTCCGCGAACGCCTTGATCC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAAATTCATGTCGCAGCTTACCAATCCCAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGACTGATAGGTATTCGCGTCTGCTTGTG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCAAAAAATATTTGGCAGTTGATGCAGAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACGGGCTTAGACACACTCACGTTTCCTATT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GACTACTAGCCACTTGACTAACCTGCTGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CTTTACTTTCACCAATTTCAGTATCAAAAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NZ_CP014201|7|2|1392048-1393139|CRT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGGGTTTACAGTGACTAACTGTTTCCCATA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAAGCTTTTCAAAGTCACTCTCTAACGTGC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTAGCATCGATTAATTACAAGCAAACCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCTGTGTGCCCTTTGCTGTGGTCGAATTA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTAGCATCGATTAATTACAAGCAAACCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCTGTGTGCCCTTTGCTGTGGTCGAATTA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTGGAGCGAAAGCTTCTTTGCCATCATGAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCTGTGGCCTAAGCAGTGACCAATGATCAC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACGCTGATAAGCCCCAAGAACATCATGGGA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGTCTTGCTTGTCCGCGAACGCCTTGATCC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAAATTCATGTCGCAGCTTACCAATCCCAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAGACTGATAGGTATTCGCGTCTGCTTGTG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCAAAAAATATTTGGCAGTTGATGCAGAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACGGGCTTAGACACACTCACGTTTCCTATT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GACTACTAGCCACTTGACTAACCTGCTGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CTTTACTTTCACCAATTTCAGTATCAAAAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NZ_CP014201|7|4|1392840-1393139|PILER-CR
	AGGGTTTACAGTGACTAACTGTTTCCCATA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAAGCTTTTCAAAGTCACTCTCTAACGTGC
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTAGCATCGATTAATTACAAGCAAACCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCTGTGTGCCCTTTGCTGTGGTCGAATTA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAGTAGCATCGATTAATTACAAGCAAACCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCTGTGTGCCCTTTGCTGTGGTCGAATTA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGACTTGGAGCGAAAGCTTCTTTGCCATCATGAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACGCTGTGGCCTAAGCAGTGACCAATGATCACGCTCTTGAACTGATTGATCTGACATCTACCTGAGACACGCTGATAAGCCCCAAGAACATCATGGGAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTGTCTTGCTTGTCCGCGAACGCCTTGATCCGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTAAATTCATGTCGCAGCTTACCAATCCCAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACAAGACTGATAGGTATTCGCGTCTGCTTGTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCAAAAAATATTTGGCAGTTGATGCAGAA
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACGGGCTTAGACACACTCACGTTTCCTATT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GACTACTAGCCACTTGACTAACCTGCTGCG
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CTTTACTTTCACCAATTTCAGTATCAAAAT
GCTCTTGAACTGATTGATCTGACATCTACCTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014201.1\|WP_046782744.1\|1378632_1380081_-\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|236580
NZ_CP014201.1\|WP_049173300.1\|1384924_1386619_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NZ_CP014201.1\|WP_005684670.1\|1404059_1405484_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP014201.1\|WP_077069533.1\|1380099_1381935_-\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919
NZ_CP014201.1\|WP_077069534.1\|1395230_1399322_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP014201.1\|WP_070543786.1\|1390605_1392024_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP014201.1\|WP_046782746.1\|1382302_1383175_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP014201.1\|WP_014569978.1\|1399602_1401330_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP014201.1\|WP_049173297.1\|1388750_1389239_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP014201.1\|WP_014569980.1\|1403049_1404063_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP014201.1\|WP_015765029.1\|1393159_1393840_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP014201.1\|WP_014569979.1\|1401310_1403053_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NZ_CP014201.1\|WP_049173193.1\|1394119_1395025_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP014201.1\|WP_049173197.1\|1407120_1408140_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|238645
NZ_CP014201.1\|WP_015765030.1\|1393836_1394142_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP014201.1\|WP_046782747.1\|1383306_1384932_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP014201.1\|WP_049173196.1\|1405715_1407020_-\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NZ_CP014201.1\|WP_049173299.1\|1386830_1387256_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NZ_CP014201.1\|WP_049173298.1\|1387442_1388543_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_077069532.1\|1377386_1378172_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181585

Protein	Function_ID	Function_description	E-value
NZ_CP014201.1\|WP_046782744.1\|1378632_1380081_-\|family-1-glycosylhydrolase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP014201.1\|WP_049173300.1\|1384924_1386619_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	2.62821e-89
NZ_CP014201.1\|WP_005684670.1\|1404059_1405484_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP014201.1\|WP_077069533.1\|1380099_1381935_-\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP014201.1\|WP_077069534.1\|1395230_1399322_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	9.06651e-118
NZ_CP014201.1\|WP_070543786.1\|1390605_1392024_+\|IS5-family-transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	1.43747e-13
NZ_CP014201.1\|WP_046782746.1\|1382302_1383175_-\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	3.43702e-43
NZ_CP014201.1\|WP_014569978.1\|1399602_1401330_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	1.18641e-159
NZ_CP014201.1\|WP_049173297.1\|1388750_1389239_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.00562e-07
NZ_CP014201.1\|WP_014569980.1\|1403049_1404063_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	1.16785e-90
NZ_CP014201.1\|WP_015765029.1\|1393159_1393840_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	9.75483e-69
NZ_CP014201.1\|WP_014569979.1\|1401310_1403053_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP014201.1\|WP_049173193.1\|1394119_1395025_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.83521e-93
NZ_CP014201.1\|WP_049173197.1\|1407120_1408140_+\|adenosine-deaminase	gnl\|CDD\|238645	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.	4.33021e-118
NZ_CP014201.1\|WP_015765030.1\|1393836_1394142_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.60312e-22
NZ_CP014201.1\|WP_046782747.1\|1383306_1384932_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.69713e-96
NZ_CP014201.1\|WP_049173196.1\|1405715_1407020_-\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP014201.1\|WP_049173299.1\|1386830_1387256_-\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	3.17146e-35
NZ_CP014201.1\|WP_077069532.1\|1377386_1378172_-\|SDR-family-oxidoreductase	gnl\|CDD\|181585	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.	1.00156e-172

>NZ_CP014201.1|WP_070543786.1|1390605_1392024_+|IS5-family-transposase
MVYRHTDVQLSFESFDCGLGTSLSPDNEWVKLASLIPWQKLDEAYQSVFNKSAGRAAKPFRELYGAELIKQRTHLSDAKLVEAIRDTPAFQYFMGRTRYEAKIPFNASTLTYFRRRASKISDLIRNIITDEVREKLEAIVPGAHVLITDATAVPIKIQFPQDASLLNKARLNLEEMVLKMAQGLQVAIPRTYKRLAKATWTEYSRHPGRQAKARRKQIKAQLQYIRRDLRYVDELLSQGGEAHLTEWQINRLAVVRKVYEQQRYMYDNKTHSVPDRIVSLSQPYIHPIVRGKAKARVEFGAKIDCSILDGVIDVERFDFESFNESTDLAATLDHCWDTLGQYPDEVLADTLYRTRANIALCKELGIKLSGPKLGRRPKHVDANQRKLDTDAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVEVDSAIVLANLMLLLGIFSIPISVITHRAGKTYQINYKVITERSKSAA
>NZ_CP014201.1|WP_049173297.1|1388750_1389239_-|GNAT-family-N-acetyltransferase
MSKAKLILSPAFYTDLKEIRHMYQQAFKSLYGKYQDRETNPYCESLKSLQKKFKRPNNAFFFITVEDKHIGLIRVVTDRKNSAARISPFLILPFYQGKGYAQLGLQLIEEQFPLIQTWYVDTIAEEPKLVHLYRKVGFQQLPDRETTINEHMHIIYFVKVRS
>NZ_CP014201.1|WP_049173298.1|1387442_1388543_-|hypothetical-protein
MKKVAIIGATLLLSIGLVACSGGSGSSSSKSNSTTSQTSNAKVKIKTGADTNAKVPAAGTLVMRQLYAAPHGKQSFAAVNVTLNGDTIVSARINEFQYVKKSSDWTGVPNSNKDFGKNYPTGQILIAKAENSKPYSALMKKEAKATHTWEENETAITNFVKGKKISDLKAAVTEVKGTKKVSDVVSGATFADTAGYLQAIYDAATTGMVAEGIQTTDTNLTEGQVLAAPHGTQSFGIVTVAMQGDKIANVFLDEFQYMPAKDFGAVPNSNTDFGKGIKAGTVLASKRANSDAYSAIMKSKGKATKTWQENSTAIDEFAKGKTVAELETAVSDLKGKKKASDVVSGATFTDTAGYLAAIIKAAKAAK
>NZ_CP014201.1|WP_049173299.1|1386830_1387256_-|NusG-domain-II-containing-protein
MRWLKRYVRPLDYVIIVLLFIACFIPAGIFSLTEANVKTSQKVAVISVNGQVKRRIKLGAHTRHQQFTLYPAKGQYNIIEVDGERIRDKEDNSPDQIAVHTGWISRIGQQSICLPHKLLIEIKPAQGNHGSNGDAGGLVHP
>NZ_CP014201.1|WP_049173300.1|1384924_1386619_-|ATP-binding-cassette-domain-containing-protein
MFGLLKYGRDQRWAGVIEAIFDWLPTLLPILIALNLGTGHQVAALVTTLVLMAVWLGYVVGYERHHRHAWAMSAKRELRDRYFTALYQRNDAVATTAADHAVIQRDLGGLNNLDMFYSTLFPTILQAGMTFLVLMGLSFWYRSWLALLPFGCVFLIGLAMMFLGKRMSAQNKAHLSGFLKMGGRFMDDLRGMNTLVMYDAADRYAQKFADDSEFFRQATMNLLKTQLQTLFVINGFVYLTVFAGGFITAVQLVAGQLPVAGAFATWFTLAMMMVNARQLGYFVHVVKSNGPSLAAILATIAKAKAAPDTVKITDNRPLSQITLDQVSIGYSADAPLVTGINATLVPGKLYGLAGENGTGKSTLIQAILGRLKPLSGAIMADQTAVSALSNVQQAAVFGYVSANEYLFSGTIQENLLLGNRFGDQWQARLASLGLMQFVPSLEKGYATQVGENGRLLSPGQRQQLAFARMLLADKTVYLLDEITSSIDEANAAVILQAVKKLSRHKIVLFISHDLKVMTQADEVWFIHDHQLTVANHQTLYQEQPAYRQLVDNPEMMENEVNPND
>NZ_CP014201.1|WP_046782747.1|1383306_1384932_-|ABC-transporter-ATP-binding-protein
MIRGLLRYTHHLTGAIFISFLIGMVAELAKVVVLVLAAMMLFDPQNAGQLLLPGLIAIILLGLGSFGEQYSGHYVAFHVLADLRGAVYRQLVRLAPAKLDTQASGKLLKLIGSDIEAMEIFYAHTLVPVAIGLVYGLLVVGIYSQLNWLAAIIALISYVAVGMVVPYARHRQLTAKTQAADRLKAANQQYLLESVRGMAVVRQLGIAKQRMTKGNEGFDQEAAAFQQAQFSQLLKNVAATVVIVGGWLLMIWLSGWQQPTAIQQALLAIFPLTFGPLLALNNLPGSLLNGLAAARNLFNLLQEQPLNAASPNANRVVTAINRIQVDQVSFSYPTRPEEAVLKDVTVTLNAGEIVGFVGASGSGKSTLAKLIMGWYPVSHGQILIDGNDLATIKPTALRNQMNYLPQMPVFFSESVRDNLTLHDPAITDQQIWTVLDQVKLRARLEQMSHGLDTVVAASHVPFSSGEQQRLELARALLHPSSVLVLDEPTSNLDTENERLILETIKTYYHGIVILISHRPESAAFADRVYRFSEHQVVLATE
>NZ_CP014201.1|WP_046782746.1|1382302_1383175_-|PRD-domain-containing-protein
MIIDAILNNNAVVVRRDKRDIIVVERGIGFHAKKGDQLTLQDSMKVYVPEDHAKLKIAMATIASLPDEYLTIAARIIQEAEVQLHTKFNSYLLIELADHIHFAVTRLHEQLILHNKLLWEIQIAYEPAFRMGEWALTEIANQIGEQLPQDEAGFIALKFVSNDLSQQHPVNSVAFTQMLANITKIIFYQLGLNMNAKTPEYQRLVIHLKFFLQRVYATSTAKTPVSPEPYDQALLAHLQQDYTQAYRCMEDVVKFMQQKLPGPISKNEQIYLTLHIARLAKSQGQSLKSS
>NZ_CP014201.1|WP_077069533.1|1380099_1381935_-|PTS-glucose-transporter-subunit-IIA
MGETALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKLEPSLSDGTEGPATVTHEKMTFKRAFNGLLTFVSGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIVALVGKPSIDFFGIPVVAANYTATVLPILLVVVVQKFLEPFFNRIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYCACVAGAVGGIIVAMSGAGANVASLASILSLPTYLGKGFGVSVIGDVVAFVLGVGLTLAFGGINAPAKNQAAAAVVADYAETLAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEEDVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQYQVETRSDGATDDDALMTLA
>NZ_CP014201.1|WP_046782744.1|1378632_1380081_-|family-1-glycosylhydrolase
MTNLKFPKQFMWGGATAANQLEGAYHEDGKGLSIADVLPQGKDRFAIVNQPDFDWTIDESKYRYPNHLGIDHYHHFKEDIKLFSEMGFKCYRFSIAWSRIFPEGDEQQPNQAGLAFYDALIAECLKYGIEPIVTISHYEMPLHLVTKYGGWKNKALITFYKRFAETVLTRYFKQVKYWMTFNEINSAFSFPVMSQGLVASNGADDKRNIFQAWHNQFVASAWAVKMGHELDPQLQIGCMLLYATTYSYDANPVNQLATLQQNQAFNFFCGDVQVRGEYPAYTDAMMAEYGVKFQELEFSAAELALLKHYPVDYIGFSYYMSAVIETTQEHHAEVGGNLLSGLKNPFLKASEWGWQIDPIGLRIALNQLYDRYRKPLFIVENGLGAIDRPDEKGEVQDDYRIDYLRQHIEQMRAAIHDGVDLMGYTPWGCIDLVSASSGQMSKRYGFIYVDLDDDGEGTLARSKKKSFDWYRRVIASNGADLA
>NZ_CP014201.1|WP_077069532.1|1377386_1378172_-|SDR-family-oxidoreductase
MYRDLNGKVAVVTGGSKGIGAGIAERFGKEHMAVVINYLGDHEGARKTADTVIKNGGQAVSIHADVSTEAGIASLVKTAESEFDRLDVWVNNAGMEIKAPTHEVSLDDWNKVIAINQTGVFLGARAALNYFLDHHQPGNIINITSVHEQIPWPTFASYTAAKGAVKLFTETIAMEYANRGIRVNAIGPGAIETPINAEKFADKAQYDQTVAMIPQGRLGKPEDVAAGAAWLASTESSYVTGTTLFIDGGMTLYPAFKDGQG
>NZ_CP014201.1|WP_015765029.1|1393159_1393840_-|type-II-A-CRISPR-associated-protein-Csn2
MNLAYYPFQLITTKPSVITVIDTGLPKVLLDLVQAFRNDDDGIVLSNEQMQIQELRKASLWIGDPVLELDLDKLFQRLIIKKVSQLIEDRRLIELIEQSQRLAMSLLREPLLSELPVTVEPGGKLEQIMKYCNVHFDEEVLTEPFSKVEAAIKTLAKLEEKRLVIFTNISHYLDVDSLNKLLDQVKETSLELLLIEFSDVERRKFFERCQYIYIDKDFMDSRELID
>NZ_CP014201.1|WP_015765030.1|1393836_1394142_-|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPVATSKDRRNYRRFRRALIDEGFLMIQYSVYVRVCKTKKSAAYMEQRIATVKPPTGIVQTLMVTEAQYQSMHFMVGTEKQDIRNSADRTVMI
>NZ_CP014201.1|WP_049173193.1|1394119_1395025_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSFIITQHCKVTTKQHSLVVQTNGEVYTMPIDDLNQVIFTTTRALISADAIAALADANAKVIFSGRDGQPVTETKNLYSDRRRAEQVRLQVNWPLDLIETVWTKIVAAKISNQAQVAKLCGHDAQGLLDDLDALEINDVSNREASAARRYFKLMFGDDFSRSDICATNAALNYGYSVLLSTTNRAIVSTGHLTEVGLHHHSASNPYNLGSDLMEPFRPAVDYWVAQHRIKELTPDVKYGLIDLLNLEITFNGKKALLQNAVADHVENCLAFLDGKAKLCRIEVKFPDEVSSHAINDHV
>NZ_CP014201.1|WP_077069534.1|1395230_1399322_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKLNQPYGIGLDIGSNSIGFAVVDANSHLLRLKGETAIGARLFREGQSAADRRGSRTTRRRLSRTRWRLSFLRDFFAPHITKIDPDFFLRQKYSEISPKDKDRFKYEKRLFNDRTDAEFYEDYPSMYHLRLHLMTHTHKADPREIFLAIHHILKSRGHFLTPGAAKDFNTDKVDLEDIFPALTEAYAQVYPDLELTFDLAKADDFKAKLLDEQATPSDTQKALVNLLLSSDGEKEIVKKRKQVLTEFAKAITGLKTKFNLALGTEVDEADASNWQFSMGQLDDKWSNIETSMTDQGTEIFEQIQELYRARLLNGIVPAGMSLSQAKVADYGQHKEDLELFKTYLKKLNDHELAKTIRGLYDRYINGDDAKPFLREDFVKALTKEVTAHPNEVSEQLLNRMGQANFMLKQRTKANGAIPIQLQQRELDQITANQSKYYDWLAAPNPVEAHRWKMPYQLDELLNFHIPYYVGPLITPKQQAESGENVFAWMVRKDPSGNITPYNFDEKVDREASANTFIQRMKTTDTYLIGEDVLPKQSLLYQKYEVLNELNNVRINNECLGTDQKQRLIREVFERHSSVTIKQVADNLVAHGDFARRPEIRGLADEKRFLSSLSTYHQLKEILHEAIDDPTKLLDIENIITWSTVFEDHTIFETKLAEIEWLDPKKINELSGIRYRGWGQFSRKLLDGLKLGNGHTVIQELMLSNHNLMQILADETLKETMTELNQDKLKTDDIEDVINDAYTSPSNKKALRQVLRVVEDIKHAANGQDPSWLFIETADGTGTAGKRTQSRQKQIQTVYANAAQELIDSAVRGELEDKIADKASFTDRLVLYFMQGGRDIYTGAPLNIDQLSHYDIDHILPQSLIKDDSLDNRVLVNATINREKNNVFASTLFAGKMKATWRKWHEAGLISGRKLRNLMLRPDEIDKFAKGFVARQLVETRQIIKLTEQIAAAQYPNTKIIAVKAGLSHQLREELDFPKNRDVNHYHHAFDAFLAARIGTYLLKRYPKLAPFFTYGEFAKVDVKKFREFNFIGALTHAKKNIIAKDTGEIVWDKERDIRELDRIYNFKRMLITHEVYFETADLFKQTIYAAKDSKERGGSKQLIPKKQGYPTQVYGGYTQESGSYNALVRVAEADTTAYQVIKISAQNASKIASANLKSREKGKQLLNEIVVKQLAKRRKNWKPSANSFKIVIPRFGMGTLFQNAKYGLFMVNSDTYYRNYQELWLSRENQKLLKKLFSIKYEKTQMNHDALQVYKAIIDQVEKFFKLYDINQFRAKLSDAIERFEKLPINTDGNKIGKTETLRQILIGLQANGTRSNVKNLGIKTDLGLLQVGSGIKLDKDTQIVYQSPSGLFKRRIPLADL
>NZ_CP014201.1|WP_014569978.1|1399602_1401330_-|thiol-reductant-ABC-exporter-subunit-CydC
MHWLKNEHWIRPDLKRYRWLLFWSLILGIMTFVFAGALMFTSGFLIDKSATKPLFAAIYVTVVLTRAFGVGRPVFQYAERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILGLLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGWFNWGFALWILLLLLFQILILPWWGLVVERFRKAEQKRLNHDAYVSLTDSVLGLSDWVITHRDQDFMKQSLAAPKKLAASTAKSKRFQWGRDFIGQLLFALIAVSMLIWTNLEWTGNQSMANWVGAFVLVVFPLDQAFSGIAQGVGEWPTYRDAIRHLNDLHPVTRELPQQQSVPTTFNKIELNDVSFRYTPSDPELITNIDLTIQAGEKIAILGPSGMGKTTLLQLVLGDLTPTNGHVLIDGQDVLDYQNHRTNLFAVLDQSPFLFNTSIVNNVRLGNEDAGDETVAAALKAVKLDQLVAQLPNGMNSSVEEAGFGFSGGERQRLSLARILLQDAPIVLLDEPTVGLDPITEQALLDTMFTVLKGKTILWVTHHLQGVSQTDRVIFLEDGRLTMNDSPQHLAEQNKRYQNLYALDAGLR
>NZ_CP014201.1|WP_014569979.1|1401310_1403053_-|thiol-reductant-ABC-exporter-subunit-CydD
MIDKTLLRLSGMRKTMTMLAGFALVQAFVILLQGKYLAEGIVHSWNRQSLAGLWLPLGLFAAAFTVRQLIVWVRNRIAAKFAMKSAAWLQAQLLRHLFALGPAAVAKEGTGNLVTMALDGIPEAENYIELILNKILNMSIIPWILVAYIWYENWLTGFTLLIMFPIIILFMVILGLAARDKSESQYAGFQKMSNHFIDSLRGLKTLQLMGISREYANNVYEVSEDYRKQTMGVLRIAMLSTFALDFFTTLSIAVVAVFLGIKLMDGTIPLYPAMVALILAPEYFMPIRDFGTDYHATLNGKNAMTAIWKVIDQPLPTDTHVLPAFKGWQPQDTLSMQHLDFTYADKRAGIQDANLTFTGPEKIAIIGASGSGKSTLLNLIGGFLQPQAADITVRGTKIPHMTQTAWQDHLSYIPQDPYLFADTIAANIRFYRPDASDQAVRDAAESAGLTTWINSLPDGYATRIGEGGRGISGGQAQRIALARTLIDTNRSIWLFDEPTAHLDIETEAALKETLVPLFANRLVIFATHRLHWLNQMDRVIVVDGGKIVAEGTPTELAAHSKPYQALVHEMRGEFNALVEK
>NZ_CP014201.1|WP_014569980.1|1403049_1404063_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MSWLQILWFFLLFVLFSGFFVLEGFDFGVGMSTKLLAHNSDEEDQLVATIGPHWDGNEVWLITAGGAMFASYPMWYASLFSGFYIMFFLVLFGLIVRGVSFEFAAHAETKTGRNIWRWALACGSLIPPFILGMIFTAIIQPLPITKNGDVFPTLGNQINLLTIVGGVAVTLMMLMHGLNFICLKTTGDLRKRARDWNSKLYYLLYAGEVVFAVLLFFMTDFFKERPISTLLILVVIVGSTVAAHIGVLKDNEVLSFIGSALGLVGVVGVIFNGLFPRVMIGQNAAMSILAKDASASPLTLTIMTIVAVILLPIALAYFIWSYVVFHKRIQAKGAVSE
>NZ_CP014201.1|WP_005684670.1|1404059_1405484_-|cytochrome-ubiquinol-oxidase-subunit-I
MLMAMDVLSLARFQFAMTTVFHFFFVPFSIGMGLVAAIMETMYVRKKDETYKKMAKFWGKIFLLSFAVGVVTGIIQEFQFGMNWSNYSRFMGDIFGVPLAIEALLAFFMESTFIGLWMFTWDRFKPAVHAIFIWMTWLGTTLSAIWILSANAFMQHPTGFAISQTTGRVKLVDFGAVITNPQLWVEFPHVIFGAFTTAGFAVAGMAAWRLLKKDHVDFYKKSLKVGLVVGTIASACAIGFGDLQTQFIIKDQPMKFAATEGIYKDTSDPAPWTLVELINTKDHTTSGNIEVPYLLSLLSYHKMNGSVKGMETANKELEAKYGKDKNYYVPVKTLFWSFRVMAGGGVLLFLLGVLGLWFSRKKKDTLLDQRWLLYILGFALWLPFIINTAGWFITELGRYPWVVYGLYTIADAVSPTTTAGQLLFTNICYFLIFTLLGGVMIYYSHRVLKNGPDGDLNTDYGVNSDPFAKEAFAK
>NZ_CP014201.1|WP_049173196.1|1405715_1407020_-|pyrimidine-nucleoside-phosphorylase
MRMVDLITKKRDHGELTDDELTWMIQQYTAEKIPDYQMSAFLMAVYFNGMSAAERDHFAFAMLHSGDVLDLSDIPGIKVDKHSTGGVGDKISIPLAPLVASLGVPVPMISGRGLGHTGGTLDKLESIPGFNVNETEAQFKHQVQTLHQAIVSASRDVAPADRRIYALRDVTGTVESIPLIAGSIMSKKLASGTDALVFDVKVGNGAFMKTSEDARALAKALVSISQSAGVKSVALLTDMNQPLGITIGNSLEIAESIAILKNRGPRDVHDLTVALAAQMLVLGKKAPSLEIATGLAEDALRDGRALNAFKQLIQAQGGDPAVVDDPRKLPQAAYRIPVKAEQSGIVTAIDTNALGVAAMQLGGGRAQKGDTLDLAVGLVLHKKLGTPVTKGDTLVMLHANDQHVDAIVELVLQAYHIGTTAPQKLPLIHEVIRP
>NZ_CP014201.1|WP_049173197.1|1407120_1408140_+|adenosine-deaminase
MDFATLHMLGKTELHCHLDGSLSLNCIRQLAQKINQPLPADDNALRKLVQAPENSENLADYLKTFDFIAPLLQTKEALQIAAFDVVAQAARENVRYIEIRFAPVLSTAGDLTLSQATEAVITGLHQAMTQFDIIAKALVCGMRQLPNADNAAMFTANAPLVGDTLVGSDFAGNEADYPTKVCAPAIETAQRLGVPLTFHAGECHCPQNIAEAIRLGIPRIGHATACFDQPELIQTIVKTHTTIELCLTSNLQTKAARSLAEFPYQALKKAGAAITINTDNRTVSNTTLTHEYERYQAYFDTTAADFLTFNLNAVNAAFIPETTKQTLRMRLKQDYAPYL

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Crispr_ID: NZ_CP014201_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014201_8

2123350-2123637

Orphan

Consensus_repeat	Method
GGCGCAGGGACCTGCATGTAAGGACCTTGGTCGCAATGGCCAAGACCGGGCCATCACGAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP014201_8

>merge|NZ_CP014201|8|2123350-2123637|PILER-CR
GCGCAGAAATCTACGTGTAAGGACCTTGGTCGCAATGGTCAAATCCCGATCATCACGTCTGAGGCCGCTTATGTTCTGGTTTACGCCCATAACGCGCTCCCCGGCGCAGGGACCTGCATGTAAGGACCTTGGTCGCAATGGCCAAGACCGGGCCATCACGACCAAGGCCACTTACACTCCGGTCCCTAACCGCACCGGCTCGCGATCACTTTCTATAACGCGCTCCCCGGCGCAGGGACCTGCATGTAAGGACCTTGGTCGCAATGGCCAAGACCGGGCCATCACGAC

>NZ_CP014201|8|5|2123350-2123637|PILER-CR
GCGCAGAAATCTACGTGTAAGGACCTTGGTCGCAATGGTCAAATCCCGATCATCACGTCT	GAGGCCGCTTATGTTCTGGTTTACGCCCATAACGCGCTCCCCGGCGCAGGGACCTGCATG
TAAGGACCTTGGTCGCAATGGCCAAGACCGGGCCATCACGACCAAGGCCACTTACACTCC	GGTCCCTAACCGCACCGGCTCGCGATCACTTTCTATAACGCGCTCCCCGGCGCAGGGACCTGCATG
TAAGGACCTTGGTCGCAATGGCCAAGACCGGGCCATCACGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014201.1\|WP_077069676.1\|2114303_2114876_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_077069679.1\|2115964_2116576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_005687891.1\|2125946_2126417_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225937
NZ_CP014201.1\|WP_005690614.1\|2109195_2110467_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP014201.1\|WP_077069674.1\|2112597_2113473_-\|Rgg/GadR/MutR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273772
NZ_CP014201.1\|WP_033572088.1\|2121624_2121900_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_077069680.1\|2119153_2120761_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270345
NZ_CP014201.1\|WP_077069687.1\|2132322_2133783_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270337
NZ_CP014201.1\|WP_005687898.1\|2129848_2130589_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP014201.1\|WP_077069672.1\|2110557_2111577_+\|Rgg/GadR/MutR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273772
NZ_CP014201.1\|WP_005687889.1\|2125141_2125465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_077069686.1\|2128842_2129709_+\|fructosamine-kinase-family-protein	unknown	unknown	gnl\|CDD\|225547
NZ_CP014201.1\|WP_077069681.1\|2120764_2121511_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP014201.1\|WP_005714239.1\|2130585_2132040_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270337
NZ_CP014201.1\|WP_014571718.1\|2121927_2123205_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP014201.1\|WP_077069684.1\|2126409_2127924_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|225962
NZ_CP014201.1\|WP_077069673.1\|2111752_2112601_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP014201.1\|WP_077069682.1\|2123863_2124580_-\|DUF975-family-protein	unknown	unknown	gnl\|CDD\|283754
NZ_CP014201.1\|WP_077069683.1\|2124651_2124990_-\|iron-sulfur-cluster-biosynthesis-family-protein	unknown	unknown	gnl\|CDD\|366687
NZ_CP014201.1\|WP_077069685.1\|2127955_2128732_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226425

Protein	Function_ID	Function_description	E-value
NZ_CP014201.1\|WP_005687891.1\|2125946_2126417_+\|PH-domain-containing-protein	gnl\|CDD\|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	2.11149e-26
NZ_CP014201.1\|WP_005690614.1\|2109195_2110467_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.51199e-26
NZ_CP014201.1\|WP_077069674.1\|2112597_2113473_-\|Rgg/GadR/MutR-family-transcriptional-regulator	gnl\|CDD\|273772	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis. [Regulatory functions, DNA interactions].	1.07785e-13
NZ_CP014201.1\|WP_077069680.1\|2119153_2120761_+\|ABC-transporter-permease-subunit	gnl\|CDD\|270345	cd13627, PBP2_AA_binding_like_2, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold. This putative amino acid-binding protein belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.5699e-125
NZ_CP014201.1\|WP_077069687.1\|2132322_2133783_-\|ABC-transporter-permease-subunit	gnl\|CDD\|270337	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily. Periplasmic glutamine binding domain GlnP serves as an initial receptor in the ABC transport of glutamine in eubacteria. GlnP belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.48147e-107
NZ_CP014201.1\|WP_005687898.1\|2129848_2130589_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	8.19044e-150
NZ_CP014201.1\|WP_077069672.1\|2110557_2111577_+\|Rgg/GadR/MutR-family-transcriptional-regulator	gnl\|CDD\|273772	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis. [Regulatory functions, DNA interactions].	2.15469e-07
NZ_CP014201.1\|WP_077069686.1\|2128842_2129709_+\|fructosamine-kinase-family-protein	gnl\|CDD\|225547	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown].	1.81104e-86
NZ_CP014201.1\|WP_077069681.1\|2120764_2121511_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.69234e-133
NZ_CP014201.1\|WP_005714239.1\|2130585_2132040_-\|ABC-transporter-permease-subunit	gnl\|CDD\|270337	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily. Periplasmic glutamine binding domain GlnP serves as an initial receptor in the ABC transport of glutamine in eubacteria. GlnP belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.7104e-111
NZ_CP014201.1\|WP_014571718.1\|2121927_2123205_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.73061e-85
NZ_CP014201.1\|WP_077069684.1\|2126409_2127924_+\|PH-domain-containing-protein	gnl\|CDD\|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	4.81079e-65
NZ_CP014201.1\|WP_077069673.1\|2111752_2112601_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.31453e-07
NZ_CP014201.1\|WP_077069682.1\|2123863_2124580_-\|DUF975-family-protein	gnl\|CDD\|283754	pfam06161, DUF975, Protein of unknown function (DUF975). Family of uncharacterized bacterial proteins.	1.69367e-18
NZ_CP014201.1\|WP_077069683.1\|2124651_2124990_-\|iron-sulfur-cluster-biosynthesis-family-protein	gnl\|CDD\|366687	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis. This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins.	1.2408e-19
NZ_CP014201.1\|WP_077069685.1\|2127955_2128732_+\|AAA-family-ATPase	gnl\|CDD\|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	1.56922e-57

>NZ_CP014201.1|WP_014571718.1|2121927_2123205_-|ABC-transporter-substrate-binding-protein
MMKRRWLLGIATGLMALALTACSSGGSSTSKSSKGPVTITFWHRMTGNYNKALESYIKTFNSSQKQYKVVATSQGSYDNLQKKYLASAKSRTLPTIGQVTDTIIPEYVHDGMLVNIDQQVKDQFSSAELKSIYPGIATNLKYHGSYYQIPFATGTRIMFYNKDILDKYHLSVPKTWSELEKIGQQLKGDGITGVAFNKSYDFEFETLAYDAGNRLITPKYQAKIDTPASIKAMTAITSMLQDKTAVTAGLDNYFNVPFVQGKIFAGFGSSATIQQIASTAPKDMHWGTAVMPSFEGKASSVLGNNGISVFKGASAAQIKGAVKFMKFLMSKKIQTQWAKASGYVPVVSTATKSSAYQAYLKANPPYQAAIKAYDDAFSSTPFIGYNTYRNNLLDAVDQTVSKKAAPKTVLTQLQKQAETILKDNR
>NZ_CP014201.1|WP_033572088.1|2121624_2121900_-|hypothetical-protein
MTTFKRILKRTLIYTLLVLGLAVLMTFGYVGYQDVTAGKGYLALRYLVLTAESVVGGFFLFLIVVSLDTWREHREKKREQAASKSNKPVKR
>NZ_CP014201.1|WP_077069681.1|2120764_2121511_+|amino-acid-ABC-transporter-ATP-binding-protein
MANEPLIQVKNLKKAFGNHEVLTDINLDVQAGEVVSIIGRSGSGKSTLLRNINLLETPTGGDILFHGKSILGDDVKLSTYRAKVGMVFQSFNLFNNMTVLQNVMVPQQTVLKRDAAAAKTHALELLKQVGMDPFVAAKPDQLSGGQEQRVAIARAEAMDPEVLLFDEPTSALDPEMVDDVLNTMTALAHTGLTMIIVTHEMAFAREVSDRVVFMNNGVIAESGTPDQIFGNPQQKATKEFLKRYLNRV
>NZ_CP014201.1|WP_077069680.1|2119153_2120761_+|ABC-transporter-permease-subunit
MSLMRKHWVARLGVLGFALSLLLGSFAATPVSAASDDNTFKVGMEAGYAPFNWTQTTSANNAVKIQGSQEYANGYDVQIARKVAKALHKKVVVVKTSWDGLPPALTSGKIDAIIAGMSPTPDRRKTIDFSNPYYISNLTMVVRKDSKYAKAKSIADFKGAKITAQLSTYHYQAINQIKGVVKEPAMNDFPAMRVALESGTIDGYVSEVPEGITAERANPNLMYIHFAKGQGFKTDASDTNLAIGLRKNDPNKAKINELLATISTKERAQLMNEAVDNQPSTEKSGNWFMAIMKQYGPMLLRGTGMTLLISLVGTLVGFIIGLLVGIIRTTPKPKKLGQRGLRAVINWLLSVYIEVFRGTPMIVQAAVLYYGAAQAWHLNMDRTTAALLIVSINTGAYISEIIRGGIISVDEGQFEAANALGMTHLQTMMKVILPQAVRNSLPAVTNEFIVNIKDTSVLSVISVSELFFSGETIAGQSFQFFHTYLIVSGIYLIMTFTISRLFRLIEKHLDGPKDYNVMNNQMQVETPKISTAKED
>NZ_CP014201.1|WP_077069679.1|2115964_2116576_+|hypothetical-protein
MFSLYSWVIYAILFLIASFCCAFYSLFIRHKFKLHDRLLTKAFGDPLHNPYRFLETEDDQIARLSQAFKFTTFIGIGCYFIGLFLFFKNLNDFSNQINLGLIAITICFMLIGIISLILAQLTDQQKMIRQIKAYHQQKYKLKFCDFFDSAKPSASIRRNQANIVGLLFLLAMLFCIFMFFNSVNSSPLSTSRITPTYLLLGKH
>NZ_CP014201.1|WP_077069676.1|2114303_2114876_+|hypothetical-protein
MGLVENWFPFIWLLLLGSGSLSVYTFYLRRKFHYNAYSLKKAFSNSPTNPFQFGKQSNSKIRQLITWSKVTLLLFVLTDIATFVLLIMTITDVISNNSIDDPWPIIIVTSFTVGLGILFNVIAQKKMTLQIKHYQQIKHKATFAMPIQSFFDSQAPSVGFRILSLSIINLVCVWSTVCATVMLLAIPNFH
>NZ_CP014201.1|WP_077069674.1|2112597_2113473_-|Rgg/GadR/MutR-family-transcriptional-regulator
MTEEAIKIGAYLRTLRLEENDSLEEIAAGITTAATLSRFERGETQLSAAVVLKLLTRFDQDVASIQQGYRALNQENFFQEVERATVAGKSALQALAQKQYQLWRQTGFIFYRLNQINILAHNEFSDPSFQTTMKMKHDVIKYLKRIRHWGLYELDLFAATLMLYDSEQLVNLVTGMVLDLPDTKSHPVRDQYLWAILTNSIALLIHRREFADATRLWHIAMNLAIPPDDLYSRLMLSYQHQLLMYHRGQHRAAKAEIEKLLTTLALLDSPFFAQLLAKSWQRFLEEEVRSN
>NZ_CP014201.1|WP_077069673.1|2111752_2112601_-|helix-turn-helix-transcriptional-regulator
MTIGKQFKLMRKERKLTLKEAAGDILSVSSLSKFENGTSQLAADRFFLLLDRLNLDWDTFTQPQSDNKRPFLHRYLVAVRHGDVQTLAGILRQLPLANTNQRLLLHLTLHNLAPERFSILAREQMQAQTLLLKTAAWSLLLRLIALQLAAVVSLSDLTQLTQAFSVQVQSPNTPQDHLNLANRTFLTATLRYIDAGRRKEAQQTLAFIRQATVGDLGVEFQIACTKRLLMIDAPDRRVSVRGQQELDALIAMLQKIATPEWTSSWLPALEALAEAKRCGKDA
>NZ_CP014201.1|WP_077069672.1|2110557_2111577_+|Rgg/GadR/MutR-family-transcriptional-regulator
MVEKIDPTDGAVFRQLRLNHHQTLAQVADEQNSIAFISKFEQGKSNISFSRLSHLLFRINMSVEEFLFIRDLQAGIVPPLKDSEFTYNTLIHRDFEAVLAFQDRFSSEEPTLADYHYLLKQEKIWQQRYAQDHNRQTQFEFITIRIFRLTMIDRVKPPDQSSPFTNVEDAMAQLQALAKPVVSYLYTVEVWNYFELYWFRHLMVALPIETIHNLLPLAIKRSEKYRAFNQIGTLRVKTLFSAFTVFINARQLPDAKKALTTAEQLLYDANDLANSALLLFLRGWYQAVAGQTAAGFELCQQAISLEHILDQPRQERWLRYLLKFIHQNIADPESSALFL
>NZ_CP014201.1|WP_005690614.1|2109195_2110467_-|MFS-transporter
MHEYMNNHGYRAILNASLLSGIGDSLYNIVFIIYAATMPFKSLAVTLAAMATSLPTMLSMITGSLADRTQAKTRHMVAARIGQMLLFCGLAGMIVLPASLPLFLGLLAINIISDTLGQYGNGLTLPILHRLIPAKELNTAISFQSATGTTVQMVFQAVGASLIVLLDHNYALFGAINAVTFLLAAVVLIRQNKRLKQAEPPVATHVHQPIFKNIRNVIRFLTTNHFLLAVIIFAMLVNTLGSSVDGLMSVTLVQQPMMWLRNFGTTVAIMNIIFSVGLILGALFAKDGLQRLSTFKLLGLLMAAMIGLSCSFFLLRSLWAAMIFSFATAYLMGKINPRLSTVMMRLVPERQMGTTAGVINLVALLGMPVGQVVFFTIANVVSAAVSWMVMAGLSLILCLALLVMGNRIADPIFTDFESDPSKA
>NZ_CP014201.1|WP_077069682.1|2123863_2124580_-|DUF975-family-protein
MDRTALKDQAKAELNPNFSYYLLISLPALLLTGLAAIVPFPTIQEAHHGEWQILVKSRLDTVTGSHMNEYLNMWQSILIFVSLLGGLLMIGVGFAMIDGLRGRSDHRFGWRQMFKIFERGEYFLGSLLIGLLQWVWIFLWTLLLIVPGIVKALAYSQAQWLYRDAIDRGQPIGYTEAITQSRQLMDGYKWEFFVLILSFLGWWLLELITFGLAAIWVMPYRTMTFANFYLKLKDKQAA
>NZ_CP014201.1|WP_077069683.1|2124651_2124990_-|iron-sulfur-cluster-biosynthesis-family-protein
MELNISAQAAARLAPLLRADRVLVLDLNDGIGPYSRSYHDPTQAKFSLLILPRRNVPDVFDAHLDSPVGPVLIKSYTCGLFDTKIELTVNGDEFTLLRGKPQLNPKVPLKFV
>NZ_CP014201.1|WP_005687889.1|2125141_2125465_+|hypothetical-protein
MNIYSALKFVQIDHAPVNHLQVVVTDQSGKPDAGMTDLLIDCLNKIDIFVDLSTTDRVSDVIDDLNLLTPLPYDVLEEYQKILEQPITGINIAMKKQLIEFVYAPLV
>NZ_CP014201.1|WP_005687891.1|2125946_2126417_+|PH-domain-containing-protein
MEQTGQALPATIQRIWRASAAIWALVILIAGLLLIAAWHFWHWSLWLAIGAMGFAILQLIFRLALVPYRYRFWRYNITPTAVFLQKGFFFQKNEAIPIARIQNVTLEAGPLLQWQELQQVNIETASTAHVIDGVTRSVADQLRNQILQLAQEARNE
>NZ_CP014201.1|WP_077069684.1|2126409_2127924_+|PH-domain-containing-protein
MNDKPKRLAPIAIPIHWLMSFIAWWPIFVSGGFSILKNDMKPKEFLFWISLVLGILVLTLLWSIVHYLRFTYLVAPDGLTINSGVFIRKINHIPYGRIQTVQRRQWFFLKPLGLEQVSIETAGKESKKAEGMLAAVPTTVADAINRYRQGLTDTPTASASDPTTEGAQTEVTPAAKTPDAAYKINAHDLNQYALTSLGFIPIITGILWLVQKVQEYLPDSWYKQAEHALTGLAIYLIIALTVIVLVLGFAISYLNILQRYYHFTLDRTGNELQTSRGFFQTNTVSAQLSRVQAVRFKQSVLRQWFHLSTVQALLASSAADDEKNDDLVLMPVIRQRQALTTMQTFISWLPTAAPEIEPIPTRHRWYYVRNIVLGNFGLIVLPAILASTLWLHLSWWLWLLPVGLLWLVIVALQGQYAGANAAIGIAAPDQLVIQVGETWTRQRYFVRRKDIQAMSFKQSLWMKPRKMAHLEIHIRKGNNDQSVSSRYMKADLAKRIMSWYQPLP
>NZ_CP014201.1|WP_077069685.1|2127955_2128732_+|AAA-family-ATPase
MLLTKIEYAPPRHHSDYPFNLPWQADFHELTLTSPVTILTGDNGSGKSTLLNAIAANYNAILMSGAALEDDPEYDNSRALARHLKLTWTYRTKAGFFFRADDFISFIRATRGRIKYAQTQLEHLAPQSLERLPYLNTLSAIKHLYQVDLDTLSHGQAFLALFRARLHANALYLLDEPESPLTPENQLSLLALIHAAVANGAQFIISTHSPTLMAYPDAQLLALGDTLAPVRYDQIDHITFLRNFLDDPQRFVYHLLND
>NZ_CP014201.1|WP_077069686.1|2128842_2129709_+|fructosamine-kinase-family-protein
MLTAAWTKQLPLQHITAITPVGGGDVNQAYRVDTAEKPYFLLVQPGYPASFYAGEIAGLKAFEQADILAPRVIANDTIEGDGYLLLSFLTSGSGSQRDLGHLVAHLHQHHEPSGRFGFDYPYAGTSVSFANDWTDSWADLFIHQRLDKLAAHLRQKGLWQAADQTTFQQVRTIIQKTLNQHHSEASLLHGDLWGGNYMFTADGQPALIDPAALYGDRELDIGVTTVFGGFTQDFYTGYQEVYPLDPGYQFRLEFYRLYYLMVHLDKFGMGYAGSVAAVMDRILDHGLA
>NZ_CP014201.1|WP_005687898.1|2129848_2130589_-|amino-acid-ABC-transporter-ATP-binding-protein
MSQYRVEMKNVHKSFGDNDVVKGVNLNVANNEVVVMIGASGAGKSTVLRMINGLETVTSGEILIDGEDIAHKGTNINKVREKIGMVFQHFNLFPNMSVMGNITLAPIELGIASKEEATQQAKEMLEVVGLTDKADAMPAQLSGGQQQRVAIARALAMHPDIMLFDEPTSALDPEMVGDVLGVMRRLAKQGMTMVIVTHEMGFAKEVADRVVFFDNGTILEQGTPTDIFEHPKEERTKSFLNKVLNA
>NZ_CP014201.1|WP_005714239.1|2130585_2132040_-|ABC-transporter-permease-subunit
MKRKWLLSLLIALPLMLGALIPGKTVAAAQKTYTIGTDVTFAPFEFANQDNKYVGIDLDLIKAIAKEEGFKVEIKPLGFNAAVQALEAKQIDGVIAGMSITPERKQKFLMSDPYYKSGVVMAVAKKSTIKSLKDLRGKRVAIKTGTDSADYANSIKQKYGFTTVTFDDSNNMYQDVITGNSAACFEDQPVMQYGINNGMALKLVGKPAREGSYGFAASKNNQALISKFNTGLKKLRANGQYDKIIEHYLGNGSAESQKTAAGNSQTTDRSFIGLLKANWSTLMDGLRETMVLTIVAIFFATLVGILIGFLGVIPNKLCQGIATTFIYIFRGLPLMVLALFIYTGVPSLIGSKVPAFIAGIVTLTLNEGAYTAAFVKGGIQAVDPGQMEAARSLGLPFGKAMRKVILPQGIKIMIPSFINQFIITLKDTSILSIIGLLELTQTGKIIIARNMEGFKIWTMVALIYLIIITLLTWLSNWVQKKVKA
>NZ_CP014201.1|WP_077069687.1|2132322_2133783_-|ABC-transporter-permease-subunit
MKRVWKWCVAGVAALILTLSLAMPVSTQAAKKTYVIGTDVTYAPFEFADKHNQYVGIDIDLMQAIAKAEGFRVDIKPLGFNAAVQALEAHQIDGVIAGMQITPERKQKFAMSDPYYKTAVAMAVAKNSGVNQLKDLRGKRVALKTGTAAADFAMSLKSKYGFSTVTFDDSNNMYQDVITGNSVACFDDKPVLQYAIATGLKLKLAGPESKASYYGFATQKGRSDELDQKFNAGLKKVKADGTYAKIVAKYLGNGTQAAQKQTSAKTQDTDRSFLGLLRENWGTLINGLRETMVVTIVAIFFATAVGILVGLLGVLPNRFARGVATTFIYIFRGLPLLVLALFIYTGVPSLIGSKIPAFVAGIITLTLNEGAYTAAFVKGGIQAVDVGQMEAARSLGLPFGKAMRKVILPQGIKIMIPSFINQFIITLKDTSILSIIGILELTQTGKIIIARNMEGFKIWTMVALIYLIIITVLTWLSNWVQRRMEA

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Crispr_ID: NZ_CP014201_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014201_9

2207513-2207626

Orphan

Consensus_repeat	Method
ACGGCTCCGAAACGCGCTCTCCAGCGCAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014201_9

>merge|NZ_CP014201|9|2207513-2207626|CRISPRCasFinder
ACGGCTCCGAAACGCGCTCTCCAGCGCAGAAGTCTACGTGTAAGGACCTGAGCCGCAATGGCCAAAACCCGGCCGACCTTATCACGGCTCCGAAACGCGCTCACCAGCGCAGAA

>NZ_CP014201|9|8|2207513-2207626|CRISPRCasFinder
ACGGCTCCGAAACGCGCTCTCCAGCGCAGAA	GTCTACGTGTAAGGACCTGAGCCGCAATGGCCAAAACCCGGCCGACCTTATC
ACGGCTCCGAAACGCGCTCACCAGCGCAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014201.1\|WP_005685697.1\|2205156_2205924_-\|protein-jag	unknown	unknown	gnl\|CDD\|224760
NZ_CP014201.1\|WP_005685708.1\|2197286_2197775_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|378960
NZ_CP014201.1\|WP_077069722.1\|2212009_2213128_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP014201.1\|WP_064657112.1\|2201353_2203255_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NZ_CP014201.1\|WP_077069724.1\|2217868_2218573_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP014201.1\|WP_005690389.1\|2213159_2215121_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|235542
NZ_CP014201.1\|WP_005685694.1\|2206807_2207164_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234782
NZ_CP014201.1\|WP_077069723.1\|2215183_2217796_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP014201.1\|WP_005714273.1\|2198745_2198952_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_077069718.1\|2205941_2206778_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|179508
NZ_CP014201.1\|WP_077069720.1\|2210167_2211307_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP014201.1\|WP_005685692.1\|2208644_2209994_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|234667
NZ_CP014201.1\|WP_077069717.1\|2203295_2204684_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_CP014201.1\|WP_005685677.1\|2219237_2219534_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP014201.1\|WP_003568442.1\|2207758_2207899_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP014201.1\|WP_048482760.1\|2199091_2199310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014201.1\|WP_077069725.1\|2218682_2219111_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180915
NZ_CP014201.1\|WP_005690417.1\|2197776_2198541_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|377697
NZ_CP014201.1\|WP_077069716.1\|2199608_2201228_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP014201.1\|WP_077069721.1\|2211800_2212013_+\|S4-domain-containing-protein-YaaA	unknown	unknown	gnl\|CDD\|379097

Protein	Function_ID	Function_description	E-value
NZ_CP014201.1\|WP_005685697.1\|2205156_2205924_-\|protein-jag	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	8.34344e-65
NZ_CP014201.1\|WP_005685708.1\|2197286_2197775_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|378960	pfam12821, ThrE_2, Threonine/Serine exporter, ThrE. ThrE_2 is a family of membrane proteins involved in the export of threonine and serine. L-threonine, L-serine are both substrates for the exporter. The exporter exhibits nine-ten predicted transmembrane-spanning helices with long charged C and N termini and an amphipathic helix present within the N-terminus. L-Threonine can be made by the amino acid-producing bacterium Corynebacterium glutamicum, but the potential for amino acid formation can be considerably improved by reducing its intracellular degradation into glycine and increasing its export by this exporter. Members of the family are found in Bacteria, Archaea, and the fungal kingdoms, and the family can exist either as a single long polypeptide chain or as two short polypeptides. All family members show an extended hydrophilic N-terminal domain with weak sequence similarity to portions of hydrolases (proteases, peptidases, and glycosidases); this suggests that since this region is cytoplasmic to the membrane it may be generating the transport substrate, so may imply that threonine may not be the primary substrate and the ThrE has a subsidiary function.	4.14589e-37
NZ_CP014201.1\|WP_077069722.1\|2212009_2213128_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	1.74531e-160
NZ_CP014201.1\|WP_064657112.1\|2201353_2203255_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NZ_CP014201.1\|WP_077069724.1\|2217868_2218573_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	2.00759e-100
NZ_CP014201.1\|WP_077069723.1\|2215183_2217796_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP014201.1\|WP_005685694.1\|2206807_2207164_-\|ribonuclease-P-protein-component	gnl\|CDD\|234782	PRK00499, rnpA, ribonuclease P; Reviewed.	1.76624e-58
NZ_CP014201.1\|WP_005690389.1\|2213159_2215121_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NZ_CP014201.1\|WP_077069718.1\|2205941_2206778_-\|membrane-protein-insertase-YidC	gnl\|CDD\|179508	PRK02944, PRK02944, YidC family membrane integrase SpoIIIJ.	4.69938e-75
NZ_CP014201.1\|WP_003568442.1\|2207758_2207899_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	1.25443e-10
NZ_CP014201.1\|WP_005685692.1\|2208644_2209994_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|234667	PRK00149, dnaA, chromosomal replication initiator protein DnaA.	0
NZ_CP014201.1\|WP_077069717.1\|2203295_2204684_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_CP014201.1\|WP_005685677.1\|2219237_2219534_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	7.63145e-37
NZ_CP014201.1\|WP_077069720.1\|2210167_2211307_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	9.09712e-145
NZ_CP014201.1\|WP_077069725.1\|2218682_2219111_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|180915	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional.	5.93424e-38
NZ_CP014201.1\|WP_005690417.1\|2197776_2198541_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	5.25924e-66
NZ_CP014201.1\|WP_077069716.1\|2199608_2201228_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.18882e-57
NZ_CP014201.1\|WP_077069721.1\|2211800_2212013_+\|S4-domain-containing-protein-YaaA	gnl\|CDD\|379097	pfam13275, S4_2, S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4.	4.68521e-31

>NZ_CP014201.1|WP_005685694.1|2206807_2207164_-|ribonuclease-P-protein-component
MRKSYRIKKEVEFQNVFDHGDSVANRNFVIYHMKRDQPHFRVGISVGKKVGHTAVMRNQIKRYIRQSLLELKPEIDPQTDFLVIARKSANQLDMAETKKNLIHVMRLAGILNEDIEVI
>NZ_CP014201.1|WP_077069718.1|2205941_2206778_-|membrane-protein-insertase-YidC
MKNRQFKRLLVIVSMLSLVFLLTACGTAPVSENSTGFWDRYVVYTAGQFVIWLANLFGGNPGVGIIAFTLIIRILIFPLSYLSIKSMAKQQEIAPQLKELQKKYSSKDTETQTKLRDETQKLYASAGVNPVMGCLPIVIQMPFLIALYQAILRTSSLQSGTFLWMNLSQPDPLWIMQILATLFTLGTSILSMMAQPTRNSSSWVMMIISPVMIFVFSVTLPSALAIYWVVTNAFSMVQQLLIQNPFKIRREREEKARAEKEKERALRKAYKKATKRRK
>NZ_CP014201.1|WP_005685697.1|2205156_2205924_-|protein-jag
MPTFQGSTIQRAIEAGLKQLGLPRDAVSVQVVQENKNGFLGFMRKPAIVNLKPLEPPADPAPDPKAKEPATGKSSAGKLAVALTDSAGKKIASAFNDITTKKRDNQTALAMVQSYLEDITSGMGIKTQVSSERQGNTVTFQLKTDEEGLLIGKHGKIINAIQYLAQTEFNHYGKSKWTIMLDVGDYRERRQATVTRLAERTAREVLATGKAIYLDPMPSFERKAIHTTLADNQYVDTHSEGVDPRRYVVVTPKRP
>NZ_CP014201.1|WP_077069717.1|2203295_2204684_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MATSITAYDTIAAISTPPGEGAISIVRLSGEAAVATANKVFKGKDLTQVKSHTIHYGHIVDPETGDLIDEVMVSVMLAPKTFTREDVVEINCHGGIVATNRILQLLLGEGARMAEPGEFTKRAFLNGRIDLTEAESVMDLIRAKTDRAMQVAVNQLDGNLHHLIKQLRQEILEVLAQVEVNIDYPEYDTDEMTTKMLLEKAQTVKKAIEQLLTTASQGKVLREGLATAIVGRPNVGKSSLLNHMLHEDKAIVTDVAGTTRDVLEEYVNVRGVPLKLVDTAGIHDTTDKVEKIGVERSRQAITQADLILLVLDQSEPLTTEDKQLLAATADKKRIIVLNKQDLPARLDTAALLQLVDADEIIKTAIPTSDGMDALDERIAKLFFGGIENSQGTVMVSNARQIGLLRQASKSLDAVIAGIHAGMPIDLVQIDMTAAWDKLGEITGESAPDELITQLFSQFCLGK
>NZ_CP014201.1|WP_064657112.1|2201353_2203255_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MPEVKKFEAGTYDVIVVGAGHAGCEAALAAARMGEKTLLLTISLEMLAFMPCNPSLGGPAKGIVVREIDALGGEMGKNIDRTYIQMRMLNTGKGPAVRALRAQADKAAYHRSMKHVIEDTPHLDLRQGLATEVLVEDGKAVGIVAATGAIYRAKSIVLTAGTSSRGKIIIGELMYSSGPNNSLPSIKLSENLEQLGFKLRRFKTGTPPRVNGNTIDFSKTEEQPGDKTPNHFSFTTPDSVYLKDQLSCWMTYTNATTHQIIRENLDRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQLFLEPEGRDTSEYYVGDFSTSMPEEIQLKMLHSVAGLEHAELMRAGYAIEYDVIEPWQLKATLETKVVENLYTAGQMNGTSGYEEAAGQGIVAGINAARRAQGKGPFTLKRSDAYIGVMIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTPMGHELGLISDQRYADFLAKRQAITDELARLEHTRLKPKDVNPWLEAHHFAPLKDGVLASDFLKRPEINYQTLAQFLPENPTLDHRVIEQVEIQIKYAGYIAKEEASVAKLKRLEGKKIPARIDYEAINGLATEARQKLVKIQPETIAQASRISGVNPADVAILSVYIEQGRISKVAQ
>NZ_CP014201.1|WP_077069716.1|2199608_2201228_+|ABC-transporter-ATP-binding-protein
MKTYRKINLRWVSHQLPALLKVKLVCFALASAFQQLLSGLVLGQLVELDFSDNLKLAEFIFFAVGSFAITAVAEYYFVKAGQRAIRLLNQALKKDYFDDALSKSLSESSEVSDVINRVDGVAKQVEQSYFESLLTVLQSSITLIGSVIVLLKLNFVLSLIYLLFSLISLLPSAFGRNKLTRQTDKWTHANADLMLIIKDLFRGRFDIINFGAGPAFYARFKNKLNHEEAEYERMNTYQYWIQFVSWSFAIFAYLSPIFIGIIFLRNGWFGVTKGIIVTLTLTADSVISGIRQLTQIQTKIVSTEKLRRVPIVQNVFLTPNATESQPAAREPKTLAINNLSVQRDQHVIFNHLNLTLAPGEKIIVTGPSGIGKSTLLKTITGRIKPTNGSIRFQGRPITTGDFVLVSQDVWLFNATLRENITLYQNYSDETLHHILNLVGLDRELGNNALETHIRDNGSNLSGGQAQRIAIARGLLRQSPIFLFDEISANLDDANAYKIRKLMYSLPSIVIEVAHHYDSALAKENGIHVKKNLLGASLTS
>NZ_CP014201.1|WP_048482760.1|2199091_2199310_-|hypothetical-protein
MKQSLVQSVWFVFLLILAFVPIFGILPGVYLLVTSQHAVNLQPMKGWIKGALVTQGCYVVALLLIAFFFVPR
>NZ_CP014201.1|WP_005714273.1|2198745_2198952_-|hypothetical-protein
MIAFLPRILLSGLMLLMVVMLVLWLFAIWKKSQFSLLLKCALTLLIVVLMLATFYVILGILLFAVNTP
>NZ_CP014201.1|WP_005690417.1|2197776_2198541_-|threonine/serine-exporter-family-protein
MSQPDTEEILEVCGKVGEIMLNAGAETSRIETTVEYIGHAAGAKVACYATITAVFVSLENESRTRLIKSSLGGFNLQKVDELNQLSREFVAHQITFDALKQEVARIERQVINFPWWARILGAGWVSVAPMLLFKATNGDLAWAFFVGIFGYLAAELVARKTTTPYFKEATGAFVVAILAELLANIGWGASSGNIIISALMPLVPGVAITNAIREILSRQIISGIVRTVDAVFVAGAIGSGVVIAIVLTQVVGGR
>NZ_CP014201.1|WP_005685708.1|2197286_2197775_-|threonine/serine-exporter-family-protein
MRLLVEFIVSVLSSIGFGVITNIPKRALLPAGITGGVSWCAYWLISLQDHSLVLPNFTATVVIGLLGNYFAIRHRVPVNTIYIPSLVSLVPGGIAYLGARSFTMGKAASAAQQIYNVILIAMALAVGFVVAEVIFKAMRPFLIRFIAKLPKVQTKSRRGKSA
>NZ_CP014201.1|WP_003568442.1|2207758_2207899_-|50S-ribosomal-protein-L34
MTTKRTFQPKKRHRERVHGFMKRMSTKNGRKVLARRRAKGRKVLSA
>NZ_CP014201.1|WP_005685692.1|2208644_2209994_+|chromosomal-replication-initiator-protein-DnaA
MPNLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTQDKLEIEVPASLHKAYWEKNLVTKVVEGVYEFAQLEVDPVIMTKDELQPASTHQHQVTDDDDDQQLTFKAKTHLNPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLMQAIGNLVLENNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGDKEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETRIAILRNKANAEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTSLAADALKALKLDDRSGQLTIPQILDAVAKYFQVTVQDLKGKKRVKQIVIPRQIAMYLAREMTDNSLPKIGQEIGGKDHTTVIHAHEKIMAAMTTNEDLKAHVVELRNILKNRG
>NZ_CP014201.1|WP_077069720.1|2210167_2211307_+|DNA-polymerase-III-subunit-beta
MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAADESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDNFQTVITSGASEFTIRGEDANNYPRLPEITADEALSVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGDQLVAVATDSHRLSQRTLTLPAASNTDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFGQTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNIGEQKATIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQGFGQTAIEVDFTAPLRPFTLVPTEDKEKFIQLITPVRTF
>NZ_CP014201.1|WP_077069721.1|2211800_2212013_+|S4-domain-containing-protein-YaaA
MTTIKITTAFLTLGQFLKEAGLIDSGGAAKWYLGEHPVTVNGAVEDRRGRKLYPDDQIKVADQTYVIVSA
>NZ_CP014201.1|WP_077069722.1|2212009_2213128_+|DNA-replication/repair-protein-RecF
MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKELIRFGSDFARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVILFAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDLVYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAYQTQVAADLRQDSEQVYEALGALFAKQQSREIEQGTSLVGPHRDDVLFIVNDKDVANFGSQGQQRTTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDTIRQTHLLKAIQAKVQTFLTTTSLDGIQKEIITAPAIFQVQDGVLTKQA
>NZ_CP014201.1|WP_005690389.1|2213159_2215121_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MTDKKESAEEKKEELAAEYDASQIQVLSGLEAVRKRPGMYIGSTSSQGLHHLVWEIIDNGIDEALAGFATRIEVEVNPDNSVTVTDDGRGIPVDIQAKTGRPALETVYTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTNLDVTVVRGGKRYYIDFVRGKVNTPMKELGPAPEHEHGTKVHFQPDPDIFTETTTFDDKVLTTRIRELAFLNKGLKLTFTDKRAATHEKLVFHYEGGLKSYVDFLTKKKENLLQEPIYVEGQDKGITVEVALQYTNDYHSTLLTFANNIHTYEGGTHETGFKTALTRVINDYARRSGALKDSDDPLSGDDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTVVDRTFSDHFNKFLMEHPADGKLIIDKAMLASKARLAAKRAREVTRKKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKSGRSRLTQAILPIRGKILNVEKASMERILANEEIRTLFTAMGTGFGQDFDISKARYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPVLDAGYVYIAQPPLYRLRQGKMMRYIDSDEELQDILGQLPPSPKPDIQRYKGLGEMDASQLWETTMDPDTRRLLRVSPKDAEQADGIFEMLMGDHVEPRRKFIEENAVFVDPNNIDV
>NZ_CP014201.1|WP_077069723.1|2215183_2217796_+|DNA-gyrase-subunit-A
MDDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTIVLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENVIRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDHDYVVGSDILKPDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDSSKPEQPTDPQAGPTDSHAQPADGQYAGNADEQVNKLLDRAETDKPADDDGNEA
>NZ_CP014201.1|WP_077069724.1|2217868_2218573_-|deoxyribose-phosphate-aldolase
MPVYTLDQFSRMIDHTNLHADATHADLERLCQEARQYHFKMVAINQVQSAFCAKQLAGTDIDVGAAIAFPLGQTSIAAKVFETKDALQNGANEIDYVINITALKERQYGYLENEMRQMVATCHAVNVPCKVIFETCYLTKAEIVKMAEIAKDVQPDFIKTSTGFGSAGATIEDVALMKTTVGEQVQVKAAGGIRDADTFLAMIKAGATRIGTSSGVKINHELKARMGNQSTLNV
>NZ_CP014201.1|WP_077069725.1|2218682_2219111_+|single-stranded-DNA-binding-protein
MLNNVSLTGRLTKEPEVFKTAADLELVRFTLAVDRVFKSKTGQRETDFIECVIFGKRALTFASSTTKGSLIGIAGRISNNHFENKQGEQQWRTSVVVDNFAWLESRAMTESRRSGSMQATGTDGMPGAPAEPAEIATDDLPF
>NZ_CP014201.1|WP_005685677.1|2219237_2219534_+|30S-ribosomal-protein-S6
MAETKYEVTYIIRPDLDEAAKTELVERFDNILKENGASIIDSKDWQKRKLAYEINKYNEGLYHIVNLSAEDDKAINEFDRLAKINNDILRHMIVKRED

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP014201_6	6.9\|1389852\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389852-1389881	30	NZ_CP014201.1	297736-297765	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP014201.1	1800449-1800478	0	1.0
NZ_CP014201_7	7.13\|1392876\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392876-1392905	30	NZ_CP014201.1	3048957-3048986	0	1.0
NZ_CP014201_7	7.14\|1392942\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392942-1392971	30	NZ_CP014201.1	3041886-3041915	0	1.0
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	NZ_CP014201.1	302669-302698	1	0.967
NZ_CP014201_6	6.10\|1389918\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389918-1389947	30	NZ_CP014201.1	3052754-3052783	1	0.967
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP014202.1	20447-20476	1	0.967
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP014202.1	24207-24236	1	0.967
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	NZ_CP014201.1	3049310-3049339	2	0.933
NZ_CP014201_8	8.2\|2123530\|66\|NZ_CP014201\|PILER-CR	2123530-2123595	66	NZ_CP014201.1	2123638-2123703	7	0.894

1. spacer 6.9|1389852|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to position: 297736-297765, mismatch: 0, identity: 1.0

atcatcgtcttcaaatccgcaagtgttacc	CRISPR spacer
atcatcgtcttcaaatccgcaagtgttacc	Protospacer
******************************

2. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to position: 1800449-1800478, mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

3. spacer 7.13|1392876|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to position: 3048957-3048986, mismatch: 0, identity: 1.0

agcaaaaaatatttggcagttgatgcagaa	CRISPR spacer
agcaaaaaatatttggcagttgatgcagaa	Protospacer
******************************

4. spacer 7.14|1392942|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to position: 3041886-3041915, mismatch: 0, identity: 1.0

acgggcttagacacactcacgtttcctatt	CRISPR spacer
acgggcttagacacactcacgtttcctatt	Protospacer
******************************

5. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to position: 302669-302698, mismatch: 1, identity: 0.967

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
agtaagcaaatcgatgacaataagaatggg	Protospacer
************.*****************

6. spacer 6.10|1389918|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to position: 3052754-3052783, mismatch: 1, identity: 0.967

tggcggctgccaaatctgcaatgctacttt	CRISPR spacer
tggccgctgccaaatctgcaatgctacttt	Protospacer
**** *************************

7. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to position: 20447-20476, mismatch: 1, identity: 0.967

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccagcatgaa	Protospacer
*********************** ******

8. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to position: 24207-24236, mismatch: 1, identity: 0.967

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccagcatgaa	Protospacer
*********************** ******

9. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to position: 3049310-3049339, mismatch: 2, identity: 0.933

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgacccacgatcac	Protospacer
********************* *.******

10. spacer 8.2|2123530|66|NZ_CP014201|PILER-CR matches to position: 2123638-2123703, mismatch: 7, identity: 0.894

caaggccacttacactccggtccctaaccgcaccggctcgcgatcactttctataacgcg	CRISPR spacer
caaggccacttacactccggtccctaaccgcgccggctcgcgatcactttctataacgcg	Protospacer
*******************************.****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014201_1	1.1\|73123\|30\|NZ_CP014201\|CRISPRCasFinder	73123-73152	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	41533-41562	0	1.0
NZ_CP014201_1	1.1\|73123\|30\|NZ_CP014201\|CRISPRCasFinder	73123-73152	30	NC_004112	Lactobacillus phage A2, complete genome	41533-41562	0	1.0
NZ_CP014201_6	6.7\|1389720\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389720-1389749	30	KR905069	Lactobacillus phage iLp84, complete genome	2732-2761	0	1.0
NZ_CP014201_6	6.7\|1389720\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389720-1389749	30	KU848186	Lactobacillus phage PLE3, complete genome	2702-2731	0	1.0
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	MN830259	Lactobacillus phage JNU_P10, complete genome	4860-4889	0	1.0
NZ_CP014201_6	6.9\|1389852\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389852-1389881	30	MN830259	Lactobacillus phage JNU_P10, complete genome	41886-41915	0	1.0
NZ_CP014201_7	7.1\|1392084\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392084-1392113	30	NC_012530	Lactobacillus phage Lb338-1, complete genome	22750-22779	0	1.0
NZ_CP014201_7	7.3\|1392216\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392216-1392245	30	MN830258	Lactobacillus phage JNU_P9, complete genome	4933-4962	0	1.0
NZ_CP014201_7	7.3\|1392216\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392216-1392245	30	AP018361	Lactobacillus phage T25 DNA, complete genome	4651-4680	0	1.0
NZ_CP014201_7	7.5\|1392348\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392348-1392377	30	MN830258	Lactobacillus phage JNU_P9, complete genome	4933-4962	0	1.0
NZ_CP014201_7	7.5\|1392348\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392348-1392377	30	AP018361	Lactobacillus phage T25 DNA, complete genome	4651-4680	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP038154	Lactobacillus paracasei strain TCS plasmid unnamed, complete sequence	11937-11966	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	ARNV02000014	Lactobacillus paracasei strain LcY plasmid pYAK, complete sequence, whole genome shotgun sequence	48306-48335	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP029549	Lactobacillus paracasei strain EG9 plasmid pEG9C, complete sequence	5697-5726	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NC_017475	Lactobacillus paracasei plasmid pLC2W, complete sequence	28765-28794	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NC_015429	Lactobacillus buchneri NRRL B-30929 plasmid pLBUC02, complete sequence	10358-10387	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP047122	Lactobacillus hilgardii strain FLUB plasmid unnamed1	15678-15707	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP039709	Lactobacillus paracasei strain Lp02 plasmid pLp02-2, complete sequence	34789-34818	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_AP012545	Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence	3568-3597	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_AP012545	Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence	24744-24773	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	AQPP01000018	Lactobacillus paracasei strain LcA plasmid pACT, complete sequence, whole genome shotgun sequence	48306-48335	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP025498	Lactobacillus paracasei subsp. tolerans strain 7112-2 plasmid p7112201, complete sequence	74341-74370	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP012188	Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence	215-244	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP012188	Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence	43045-43074	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP012188	Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence	46806-46835	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP012190	Lactobacillus paracasei strain CAUH35 plasmid unnamed3, complete sequence	1311-1340	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP012190	Lactobacillus paracasei strain CAUH35 plasmid unnamed3, complete sequence	32539-32568	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP012190	Lactobacillus paracasei strain CAUH35 plasmid unnamed3, complete sequence	44910-44939	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP017997	Lactobacillus crustorum strain MN047 plasmid unnamed1, complete sequence	28028-28057	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NC_020057	Lactobacillus casei W56 plasmid pW56, complete sequence	46474-46503	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_AP018394	Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2	8896-8925	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_AP018394	Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2	47483-47512	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP017263	Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.22, complete sequence	3513-3542	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP017263	Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.22, complete sequence	7109-7138	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NC_017476	Lactobacillus paracasei plasmid pBD-II, complete sequence	47520-47549	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP019982	Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence	16904-16933	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP041658	Lactobacillus paracasei strain CBA3611 plasmid pLP1, complete sequence	11678-11707	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP044363	Lactobacillus paracasei strain TD 062 plasmid unnamed2, complete sequence	15357-15386	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP044365	Lactobacillus paracasei strain TD 062 plasmid unnamed4, complete sequence	12444-12473	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP014986	Lactobacillus paracasei strain IIA plasmid unnamed1, complete sequence	17127-17156	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP018179	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-3, complete sequence	5989-6018	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP018182	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-2, complete sequence	3793-3822	0	1.0
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP012189	Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence	34473-34502	0	1.0
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	EU246945	Lactobacillus phage Lrm1, complete sequence	27302-27331	0	1.0
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	NC_011104	Lactobacillus phage Lrm1, complete genome	27302-27331	0	1.0
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	MF999224	Lactobacillus phage LJ, complete genome	418-447	0	1.0
NZ_CP014201_7	7.11\|1392744\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392744-1392773	30	NZ_CP025078	Enterococcus faecium strain LS170308 plasmid unnamed, complete sequence	38996-39025	0	1.0
NZ_CP014201_7	7.11\|1392744\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392744-1392773	30	NC_009751	Lactococcus lactis subsp. lactis K214 plasmid pK214, complete sequence	20901-20930	0	1.0
NZ_CP014201_7	7.11\|1392744\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392744-1392773	30	NZ_CP038167	Enterococcus faecium strain SC3-1 plasmid pSC3-1, complete sequence	31864-31893	0	1.0
NZ_CP014201_7	7.11\|1392744\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392744-1392773	30	NZ_CP028728	Enterococcus faecium strain FSIS1608820 plasmid pFSIS1608820, complete sequence	10451-10480	0	1.0
NZ_CP014201_7	7.13\|1392876\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392876-1392905	30	EU246945	Lactobacillus phage Lrm1, complete sequence	26949-26978	0	1.0
NZ_CP014201_7	7.13\|1392876\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392876-1392905	30	NC_011104	Lactobacillus phage Lrm1, complete genome	26949-26978	0	1.0
NZ_CP014201_7	7.13\|1392876\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392876-1392905	30	MH983004	Lactobacillus phage BH1, complete genome	26761-26790	0	1.0
NZ_CP014201_7	7.14\|1392942\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392942-1392971	30	MH983004	Lactobacillus phage BH1, complete genome	21741-21770	0	1.0
NZ_CP014201_6	6.6\|1389654\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389654-1389683	30	MN830259	Lactobacillus phage JNU_P10, complete genome	1976-2005	1	0.967
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	NC_028835	Lactobacillus phage CL2, complete genome	12964-12993	1	0.967
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	KR905066	Lactobacillus phage CL1, complete genome	11949-11978	1	0.967
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	NC_028911	Lactobacillus phage iLp1308, complete genome	11657-11686	1	0.967
NZ_CP014201_6	6.10\|1389918\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389918-1389947	30	MF999224	Lactobacillus phage LJ, complete genome	4868-4897	1	0.967
NZ_CP014201_6	6.13\|1390116\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390116-1390145	30	MN830258	Lactobacillus phage JNU_P9, complete genome	38460-38489	1	0.967
NZ_CP014201_7	7.2\|1392150\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392150-1392179	30	NC_007501	Lactobacillus phage Lc-Nu, complete genome	26357-26386	1	0.967
NZ_CP014201_7	7.2\|1392150\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392150-1392179	30	AY131267	Bacteriophage Lc-Nu, complete genome	26357-26386	1	0.967
NZ_CP014201_7	7.2\|1392150\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392150-1392179	30	KC171647	Lactobacillus phage PL-1, complete genome	28318-28347	1	0.967
NZ_CP014201_7	7.2\|1392150\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392150-1392179	30	NC_022756	Lactobacillus phage J-1, complete genome	30369-30398	1	0.967
NZ_CP014201_7	7.2\|1392150\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392150-1392179	30	MF999224	Lactobacillus phage LJ, complete genome	4011-4040	1	0.967
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_AP012545	Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence	11884-11913	1	0.967
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_AP012545	Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence	20424-20453	1	0.967
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP014202	Lactobacillus rhamnosus strain BFE5264 plasmid, complete sequence	20447-20476	1	0.967
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP014202	Lactobacillus rhamnosus strain BFE5264 plasmid, complete sequence	24207-24236	1	0.967
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	KR905066	Lactobacillus phage CL1, complete genome	25063-25092	1	0.967
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	AP018361	Lactobacillus phage T25 DNA, complete genome	17854-17883	1	0.967
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	NC_028835	Lactobacillus phage CL2, complete genome	25498-25527	1	0.967
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	NC_005893	Lactobacillus phage phiAT3, complete genome	27480-27509	1	0.967
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	AY605066	Bacteriophage phi AT3, complete sequence	27480-27509	1	0.967
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	MN830258	Lactobacillus phage JNU_P9, complete genome	30172-30201	1	0.967
NZ_CP014201_7	7.9\|1392612\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392612-1392641	30	MN830258	Lactobacillus phage JNU_P9, complete genome	4473-4502	1	0.967
NZ_CP014201_7	7.14\|1392942\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392942-1392971	30	EU246945	Lactobacillus phage Lrm1, complete sequence	22766-22795	1	0.967
NZ_CP014201_7	7.14\|1392942\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392942-1392971	30	NC_011104	Lactobacillus phage Lrm1, complete genome	22766-22795	1	0.967
NZ_CP014201_6	6.6\|1389654\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389654-1389683	30	NC_028835	Lactobacillus phage CL2, complete genome	10077-10106	2	0.933
NZ_CP014201_6	6.6\|1389654\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389654-1389683	30	KR905066	Lactobacillus phage CL1, complete genome	9062-9091	2	0.933
NZ_CP014201_6	6.6\|1389654\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389654-1389683	30	NC_028911	Lactobacillus phage iLp1308, complete genome	8770-8799	2	0.933
NZ_CP014201_6	6.7\|1389720\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389720-1389749	30	NC_028835	Lactobacillus phage CL2, complete genome	3666-3695	2	0.933
NZ_CP014201_6	6.7\|1389720\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389720-1389749	30	KR905066	Lactobacillus phage CL1, complete genome	2651-2680	2	0.933
NZ_CP014201_6	6.7\|1389720\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389720-1389749	30	NC_028911	Lactobacillus phage iLp1308, complete genome	2747-2776	2	0.933
NZ_CP014201_6	6.10\|1389918\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389918-1389947	30	NC_007501	Lactobacillus phage Lc-Nu, complete genome	27214-27243	2	0.933
NZ_CP014201_6	6.10\|1389918\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389918-1389947	30	AY131267	Bacteriophage Lc-Nu, complete genome	27214-27243	2	0.933
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	KC171647	Lactobacillus phage PL-1, complete genome	25782-25811	2	0.933
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	NC_022756	Lactobacillus phage J-1, complete genome	27833-27862	2	0.933
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	MF999224	Lactobacillus phage LJ, complete genome	1533-1562	2	0.933
NZ_CP014201_6	6.13\|1390116\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390116-1390145	30	MF999224	Lactobacillus phage LJ, complete genome	7862-7891	2	0.933
NZ_CP014201_6	6.13\|1390116\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390116-1390145	30	MH983004	Lactobacillus phage BH1, complete genome	32723-32752	2	0.933
NZ_CP014201_7	7.1\|1392084\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392084-1392113	30	MT758689	Lactobacillus phage Lbab1, complete genome	48033-48062	2	0.933
NZ_CP014201_7	7.1\|1392084\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392084-1392113	30	MT758689	Lactobacillus phage Lbab1, complete genome	67199-67228	2	0.933
NZ_CP014201_7	7.1\|1392084\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392084-1392113	30	MK504443	Lactobacillus phage 521B, complete genome	30749-30778	2	0.933
NZ_CP014201_7	7.1\|1392084\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392084-1392113	30	MK504443	Lactobacillus phage 521B, complete genome	38220-38249	2	0.933
NZ_CP014201_7	7.4\|1392282\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392282-1392311	30	EU246945	Lactobacillus phage Lrm1, complete sequence	37470-37499	2	0.933
NZ_CP014201_7	7.4\|1392282\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392282-1392311	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	40437-40466	2	0.933
NZ_CP014201_7	7.4\|1392282\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392282-1392311	30	NC_011104	Lactobacillus phage Lrm1, complete genome	37470-37499	2	0.933
NZ_CP014201_7	7.4\|1392282\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392282-1392311	30	NC_028911	Lactobacillus phage iLp1308, complete genome	33313-33342	2	0.933
NZ_CP014201_7	7.4\|1392282\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392282-1392311	30	NC_004112	Lactobacillus phage A2, complete genome	40437-40466	2	0.933
NZ_CP014201_7	7.6\|1392414\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392414-1392443	30	EU246945	Lactobacillus phage Lrm1, complete sequence	37470-37499	2	0.933
NZ_CP014201_7	7.6\|1392414\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392414-1392443	30	AJ251789	Lactobacillus casei bacteriophage A2 complete genome	40437-40466	2	0.933
NZ_CP014201_7	7.6\|1392414\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392414-1392443	30	NC_011104	Lactobacillus phage Lrm1, complete genome	37470-37499	2	0.933
NZ_CP014201_7	7.6\|1392414\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392414-1392443	30	NC_028911	Lactobacillus phage iLp1308, complete genome	33313-33342	2	0.933
NZ_CP014201_7	7.6\|1392414\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392414-1392443	30	NC_004112	Lactobacillus phage A2, complete genome	40437-40466	2	0.933
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	KC171647	Lactobacillus phage PL-1, complete genome	24667-24696	2	0.933
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	NC_022756	Lactobacillus phage J-1, complete genome	26718-26747	2	0.933
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	MH983004	Lactobacillus phage BH1, complete genome	27114-27143	2	0.933
NZ_CP014201_7	7.11\|1392744\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392744-1392773	30	NC_020237	Staphylococcus hyicus plasmid pSTE1 complete sequence	2653-2682	2	0.933
NZ_CP014201_7	7.11\|1392744\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392744-1392773	30	NZ_CP013627	Staphylococcus aureus strain RIVM1183 plasmid pRIVM1183, complete sequence	2073-2102	2	0.933
NZ_CP014201_7	7.15\|1393008\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393008-1393037	30	NC_012530	Lactobacillus phage Lb338-1, complete genome	59720-59749	2	0.933
NZ_CP014201_7	7.16\|1393074\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393074-1393103	30	NC_012530	Lactobacillus phage Lb338-1, complete genome	16725-16754	2	0.933
NZ_CP014201_1	1.1\|73123\|30\|NZ_CP014201\|CRISPRCasFinder	73123-73152	30	NC_005893	Lactobacillus phage phiAT3, complete genome	38862-38891	3	0.9
NZ_CP014201_1	1.1\|73123\|30\|NZ_CP014201\|CRISPRCasFinder	73123-73152	30	AY605066	Bacteriophage phi AT3, complete sequence	38862-38891	3	0.9
NZ_CP014201_6	6.7\|1389720\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389720-1389749	30	MN830259	Lactobacillus phage JNU_P10, complete genome	37131-37160	3	0.9
NZ_CP014201_6	6.9\|1389852\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389852-1389881	30	KR905069	Lactobacillus phage iLp84, complete genome	7780-7809	3	0.9
NZ_CP014201_6	6.9\|1389852\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389852-1389881	30	KU848186	Lactobacillus phage PLE3, complete genome	7750-7779	3	0.9
NZ_CP014201_7	7.4\|1392282\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392282-1392311	30	MN830258	Lactobacillus phage JNU_P9, complete genome	1443-1472	3	0.9
NZ_CP014201_7	7.4\|1392282\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392282-1392311	30	KR905069	Lactobacillus phage iLp84, complete genome	38534-38563	3	0.9
NZ_CP014201_7	7.4\|1392282\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392282-1392311	30	KU848186	Lactobacillus phage PLE3, complete genome	40110-40139	3	0.9
NZ_CP014201_7	7.6\|1392414\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392414-1392443	30	MN830258	Lactobacillus phage JNU_P9, complete genome	1443-1472	3	0.9
NZ_CP014201_7	7.6\|1392414\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392414-1392443	30	KR905069	Lactobacillus phage iLp84, complete genome	38534-38563	3	0.9
NZ_CP014201_7	7.6\|1392414\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392414-1392443	30	KU848186	Lactobacillus phage PLE3, complete genome	40110-40139	3	0.9
NZ_CP014201_7	7.15\|1393008\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393008-1393037	30	MT758689	Lactobacillus phage Lbab1, complete genome	53523-53552	3	0.9
NZ_CP014201_7	7.8\|1392546\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392546-1392575	30	KR905068	Lactobacillus phage iA2, complete genome	26344-26373	4	0.867
NZ_CP014201_7	7.9\|1392612\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392612-1392641	30	NZ_CP014925	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-1, complete sequence	17072-17101	4	0.867
NZ_CP014201_7	7.9\|1392612\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392612-1392641	30	NZ_CP014913	Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-1, complete sequence	14079-14108	4	0.867
NZ_CP014201_7	7.10\|1392678\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392678-1392707	30	NZ_CP023440	Thauera sp. K11 plasmid pTX1, complete sequence	29375-29404	5	0.833
NZ_CP014201_6	6.5\|1389588\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389588-1389617	30	NZ_CP041067	Bacillus megaterium strain KNU-01 plasmid pKNU_01_3, complete sequence	23168-23197	6	0.8
NZ_CP014201_6	6.7\|1389720\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389720-1389749	30	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	784572-784601	6	0.8
NZ_CP014201_6	6.10\|1389918\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389918-1389947	30	MN694114	Marine virus AFVG_250M252, complete genome	20957-20986	6	0.8
NZ_CP014201_7	7.3\|1392216\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392216-1392245	30	MN694015	Marine virus AFVG_250M337, complete genome	31216-31245	6	0.8
NZ_CP014201_7	7.3\|1392216\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392216-1392245	30	MN694354	Marine virus AFVG_250M116, complete genome	31351-31380	6	0.8
NZ_CP014201_7	7.3\|1392216\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392216-1392245	30	MN694608	Marine virus AFVG_250M55, complete genome	30450-30479	6	0.8
NZ_CP014201_7	7.3\|1392216\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392216-1392245	30	MN694542	Marine virus AFVG_250M54, complete genome	8775-8804	6	0.8
NZ_CP014201_7	7.3\|1392216\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392216-1392245	30	MN694156	Marine virus AFVG_250M53, complete genome	8772-8801	6	0.8
NZ_CP014201_7	7.5\|1392348\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392348-1392377	30	MN694015	Marine virus AFVG_250M337, complete genome	31216-31245	6	0.8
NZ_CP014201_7	7.5\|1392348\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392348-1392377	30	MN694354	Marine virus AFVG_250M116, complete genome	31351-31380	6	0.8
NZ_CP014201_7	7.5\|1392348\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392348-1392377	30	MN694608	Marine virus AFVG_250M55, complete genome	30450-30479	6	0.8
NZ_CP014201_7	7.5\|1392348\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392348-1392377	30	MN694542	Marine virus AFVG_250M54, complete genome	8775-8804	6	0.8
NZ_CP014201_7	7.5\|1392348\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392348-1392377	30	MN694156	Marine virus AFVG_250M53, complete genome	8772-8801	6	0.8
NZ_CP014201_6	6.3\|1389456\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389456-1389485	30	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	222055-222084	7	0.767
NZ_CP014201_6	6.3\|1389456\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389456-1389485	30	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	324618-324647	7	0.767
NZ_CP014201_6	6.3\|1389456\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389456-1389485	30	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	33556-33585	7	0.767
NZ_CP014201_6	6.3\|1389456\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389456-1389485	30	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	53807-53836	7	0.767
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	AP014143	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S24-C76, * SEQUENCING IN PROGRESS *	4430-4459	7	0.767
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	MN855594	Siphoviridae sp. isolate 197, complete genome	8956-8985	7	0.767
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	AP014148	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S32-C91, * SEQUENCING IN PROGRESS *	25864-25893	7	0.767
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	AP014144	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S25-C77, * SEQUENCING IN PROGRESS *	4430-4459	7	0.767
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	AP014147	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S30-C164, * SEQUENCING IN PROGRESS *	4430-4459	7	0.767
NZ_CP014201_6	6.9\|1389852\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389852-1389881	30	MT325768	Psychrobacillus phage Perkons, complete genome	54239-54268	7	0.767
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	649719-649748	7	0.767
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	315642-315671	7	0.767
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	NZ_CP015739	Shinella sp. HZN7 plasmid pShin-03, complete sequence	210521-210550	7	0.767
NZ_CP014201_6	6.14\|1390182\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390182-1390211	30	NC_021559	Prochlorococcus phage P-SSM3 genomic sequence	41483-41512	7	0.767
NZ_CP014201_6	6.19\|1389456\|29\|NZ_CP014201\|PILER-CR	1389456-1389484	29	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	33557-33585	7	0.759
NZ_CP014201_6	6.19\|1389456\|29\|NZ_CP014201\|PILER-CR	1389456-1389484	29	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	222055-222083	7	0.759
NZ_CP014201_6	6.19\|1389456\|29\|NZ_CP014201\|PILER-CR	1389456-1389484	29	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	324618-324646	7	0.759
NZ_CP014201_6	6.19\|1389456\|29\|NZ_CP014201\|PILER-CR	1389456-1389484	29	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	53808-53836	7	0.759
NZ_CP014201_7	7.3\|1392216\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392216-1392245	30	MN694052	Marine virus AFVG_250M52, complete genome	8264-8293	7	0.767
NZ_CP014201_7	7.5\|1392348\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392348-1392377	30	MN694052	Marine virus AFVG_250M52, complete genome	8264-8293	7	0.767
NZ_CP014201_7	7.10\|1392678\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392678-1392707	30	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	342077-342106	7	0.767
NZ_CP014201_7	7.16\|1393074\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393074-1393103	30	NZ_CP016746	Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence	13958-13987	7	0.767
NZ_CP014201_7	7.16\|1393074\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393074-1393103	30	MN582058	Caudovirales sp. ctOwN3, complete genome	56135-56164	7	0.767
NZ_CP014201_6	6.7\|1389720\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389720-1389749	30	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	410514-410543	8	0.733
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	NZ_CP015507	Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence	236594-236623	8	0.733
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	AB012573	Vibrio phage Vf33 DNA, complete genome	2522-2551	8	0.733
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	NC_005948	Vibrio phage Vf33, complete genome	2522-2551	8	0.733
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	NC_005949	Vibrio phage Vf12 DNA, complete genome	2522-2551	8	0.733
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	445457-445486	8	0.733
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	NC_001956	Vibrio phage fs2, complete genome	3102-3131	8	0.733
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	AB002632	Vibrio phage fs2 DNA, complete genome	3102-3131	8	0.733
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	NC_021562	Vibrio phage VFJ, complete genome	2814-2843	8	0.733
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	NZ_CP040048	Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence	213039-213068	8	0.733
NZ_CP014201_7	7.1\|1392084\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392084-1392113	30	NC_041925	Proteus phage VB_PmiS-Isfahan, complete genome	1225-1254	8	0.733
NZ_CP014201_7	7.1\|1392084\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392084-1392113	30	MG575420	Proteus phage vB_PmiP_RS10pmA, complete genome	38387-38416	8	0.733
NZ_CP014201_7	7.1\|1392084\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392084-1392113	30	MN840487	Proteus phage 2207-N35, complete genome	5873-5902	8	0.733
NZ_CP014201_7	7.4\|1392282\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392282-1392311	30	NZ_CP039224	Piscirickettsia salmonis strain NVI 5692 plasmid unnamed5, complete sequence	20758-20787	8	0.733
NZ_CP014201_7	7.6\|1392414\|30\|NZ_CP014201\|PILER-CR,CRISPRCasFinder,CRT	1392414-1392443	30	NZ_CP039224	Piscirickettsia salmonis strain NVI 5692 plasmid unnamed5, complete sequence	20758-20787	8	0.733
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	MN585195	Pseudomonas phage AUS531phi, complete genome	8973-9002	8	0.733
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP009649	Bacillus pseudomycoides strain BTZ plasmid pBTZ_2, complete sequence	67902-67931	8	0.733
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	13064-13093	8	0.733
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	336450-336479	8	0.733
NZ_CP014201_7	7.9\|1392612\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392612-1392641	30	NZ_CP022492	Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence	80447-80476	8	0.733
NZ_CP014201_7	7.9\|1392612\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392612-1392641	30	NZ_CP019193	Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717 plasmid pATCC10717, complete sequence	134770-134799	8	0.733
NZ_CP014201_7	7.10\|1392678\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392678-1392707	30	KX898400	Pseudomonas phage JG054, complete genome	26868-26897	8	0.733
NZ_CP014201_7	7.13\|1392876\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392876-1392905	30	NZ_CP017944	Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence	168721-168750	8	0.733
NZ_CP014201_7	7.16\|1393074\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393074-1393103	30	AY301284	Enterobacteria phage RB69 gp59 (59), gp32 (32), Frd.3 (frd.3), Frd.2 (frd.2), Frd.1 (frd.1), and Frd (frd) genes, complete cds	1225-1254	8	0.733
NZ_CP014201_7	7.16\|1393074\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393074-1393103	30	NC_041863	Escherichia coli O157 typing phage 3, complete genome	3863-3892	8	0.733
NZ_CP014201_7	7.16\|1393074\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393074-1393103	30	GU071095	Synechococcus phage S-SM2, complete genome	117229-117258	8	0.733
NZ_CP014201_7	7.16\|1393074\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393074-1393103	30	KP869111	Escherichia coli O157 typing phage 13, partial genome	137874-137903	8	0.733
NZ_CP014201_7	7.16\|1393074\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393074-1393103	30	KP869104	Escherichia coli O157 typing phage 6, complete genome	156670-156699	8	0.733
NZ_CP014201_7	7.16\|1393074\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1393074-1393103	30	AY303349	Enterobacteria phage RB69, complete genome	146473-146502	8	0.733
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	NC_002473	Vibrio parahaemolyticus plasmid pO3K6 DNA, complete sequence	2132-2161	9	0.7
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	AB043678	Vibrio phage VfO3K6 DNA, complete genome	2610-2639	9	0.7
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	AB043679	Vibrio phage VfO4K68 DNA, complete genome	2610-2639	9	0.7
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	NC_002363	Vibrio phage VfO4K68, complete genome	2610-2639	9	0.7
NZ_CP014201_6	6.8\|1389786\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389786-1389815	30	NC_002362	Vibrio phage VfO3K6, complete genome	2610-2639	9	0.7
NZ_CP014201_6	6.11\|1389984\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1389984-1390013	30	NZ_CP013633	Rhizobium sp. N324 plasmid pRspN324c, complete sequence	23027-23056	9	0.7
NZ_CP014201_6	6.12\|1390050\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390050-1390079	30	NZ_CP044976	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence	18545-18574	9	0.7
NZ_CP014201_6	6.14\|1390182\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390182-1390211	30	MK448851	Streptococcus phage Javan14, complete genome	16060-16089	9	0.7
NZ_CP014201_6	6.17\|1390381\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390381-1390410	30	JB137888	Sequence 7 from Patent WO2012159774	15079-15108	9	0.7
NZ_CP014201_6	6.17\|1390381\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390381-1390410	30	KJ094025	Listeria phage LP-032 contig 2, partial genome	4719-4748	9	0.7
NZ_CP014201_6	6.17\|1390381\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390381-1390410	30	NC_021787	Listeria phage LP-037, complete genome	55184-55213	9	0.7
NZ_CP014201_6	6.17\|1390381\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390381-1390410	30	MN904502	Listeria phage LP-018, complete genome	32270-32299	9	0.7
NZ_CP014201_6	6.17\|1390381\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1390381-1390410	30	KJ094020	Listeria phage LP-026, complete genome	15274-15303	9	0.7
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	297381-297410	9	0.7
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	297380-297409	9	0.7
NZ_CP014201_7	7.13\|1392876\|30\|NZ_CP014201\|CRISPRCasFinder,CRT,PILER-CR	1392876-1392905	30	NZ_CP032486	Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence	1981-2010	9	0.7
NZ_CP014201_6	6.1\|1389324\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389324-1389353	30	MH940212	Salmonella phage PS5, complete genome	87981-88010	10	0.667
NZ_CP014201_6	6.1\|1389324\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389324-1389353	30	NC_022772	Salmonella phage Marshall, complete genome	43523-43552	10	0.667
NZ_CP014201_6	6.1\|1389324\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389324-1389353	30	MH688040	Salmonella phage Mooltan, complete genome	43621-43650	10	0.667
NZ_CP014201_6	6.1\|1389324\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389324-1389353	30	KF669654	Salmonella phage Maynard, complete genome	41777-41806	10	0.667
NZ_CP014201_6	6.1\|1389324\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1389324-1389353	30	MN066127	Salmonella phage Matapan, complete genome	43609-43638	10	0.667
NZ_CP014201_7	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	NZ_CP009266	Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence	226483-226512	10	0.667

1. spacer 1.1|73123|30|NZ_CP014201|CRISPRCasFinder matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 0, identity: 1.0

ttagctatggctacgttagccgcacggagc	CRISPR spacer
ttagctatggctacgttagccgcacggagc	Protospacer
******************************

2. spacer 1.1|73123|30|NZ_CP014201|CRISPRCasFinder matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 0, identity: 1.0

ttagctatggctacgttagccgcacggagc	CRISPR spacer
ttagctatggctacgttagccgcacggagc	Protospacer
******************************

3. spacer 6.7|1389720|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KR905069 (Lactobacillus phage iLp84, complete genome) position: , mismatch: 0, identity: 1.0

taccaagcctgatggcgatgccattcaaga	CRISPR spacer
taccaagcctgatggcgatgccattcaaga	Protospacer
******************************

4. spacer 6.7|1389720|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KU848186 (Lactobacillus phage PLE3, complete genome) position: , mismatch: 0, identity: 1.0

taccaagcctgatggcgatgccattcaaga	CRISPR spacer
taccaagcctgatggcgatgccattcaaga	Protospacer
******************************

5. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MN830259 (Lactobacillus phage JNU_P10, complete genome) position: , mismatch: 0, identity: 1.0

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
agtaagcaaatcaatgacaataagaatggg	Protospacer
******************************

6. spacer 6.9|1389852|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MN830259 (Lactobacillus phage JNU_P10, complete genome) position: , mismatch: 0, identity: 1.0

atcatcgtcttcaaatccgcaagtgttacc	CRISPR spacer
atcatcgtcttcaaatccgcaagtgttacc	Protospacer
******************************

7. spacer 7.1|1392084|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_012530 (Lactobacillus phage Lb338-1, complete genome) position: , mismatch: 0, identity: 1.0

agggtttacagtgactaactgtttcccata	CRISPR spacer
agggtttacagtgactaactgtttcccata	Protospacer
******************************

8. spacer 7.3|1392216|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 0, identity: 1.0

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
tagtagcatcgattaattacaagcaaaccg	Protospacer
******************************

9. spacer 7.3|1392216|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to AP018361 (Lactobacillus phage T25 DNA, complete genome) position: , mismatch: 0, identity: 1.0

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
tagtagcatcgattaattacaagcaaaccg	Protospacer
******************************

10. spacer 7.5|1392348|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 0, identity: 1.0

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
tagtagcatcgattaattacaagcaaaccg	Protospacer
******************************

11. spacer 7.5|1392348|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to AP018361 (Lactobacillus phage T25 DNA, complete genome) position: , mismatch: 0, identity: 1.0

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
tagtagcatcgattaattacaagcaaaccg	Protospacer
******************************

12. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP038154 (Lactobacillus paracasei strain TCS plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

13. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to ARNV02000014 (Lactobacillus paracasei strain LcY plasmid pYAK, complete sequence, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

14. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP029549 (Lactobacillus paracasei strain EG9 plasmid pEG9C, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

15. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_017475 (Lactobacillus paracasei plasmid pLC2W, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

16. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_015429 (Lactobacillus buchneri NRRL B-30929 plasmid pLBUC02, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

17. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP047122 (Lactobacillus hilgardii strain FLUB plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

18. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP039709 (Lactobacillus paracasei strain Lp02 plasmid pLp02-2, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

19. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_AP012545 (Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

20. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_AP012545 (Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

21. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to AQPP01000018 (Lactobacillus paracasei strain LcA plasmid pACT, complete sequence, whole genome shotgun sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

22. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP025498 (Lactobacillus paracasei subsp. tolerans strain 7112-2 plasmid p7112201, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

23. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP012188 (Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

24. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP012188 (Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

25. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP012188 (Lactobacillus paracasei strain CAUH35 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

26. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP012190 (Lactobacillus paracasei strain CAUH35 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

27. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP012190 (Lactobacillus paracasei strain CAUH35 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

28. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP012190 (Lactobacillus paracasei strain CAUH35 plasmid unnamed3, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

29. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP017997 (Lactobacillus crustorum strain MN047 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

30. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_020057 (Lactobacillus casei W56 plasmid pW56, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

31. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_AP018394 (Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

32. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_AP018394 (Lactobacillus paracasei strain IJH-SONE68 plasmid pLPS-2) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

33. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP017263 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.22, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

34. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP017263 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.22, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

35. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_017476 (Lactobacillus paracasei plasmid pBD-II, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

36. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP019982 (Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

37. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP041658 (Lactobacillus paracasei strain CBA3611 plasmid pLP1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

38. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP044363 (Lactobacillus paracasei strain TD 062 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

39. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP044365 (Lactobacillus paracasei strain TD 062 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

40. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP014986 (Lactobacillus paracasei strain IIA plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

41. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP018179 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-3, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

42. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP018182 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-2, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

43. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP012189 (Lactobacillus paracasei strain CAUH35 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

44. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to EU246945 (Lactobacillus phage Lrm1, complete sequence) position: , mismatch: 0, identity: 1.0

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgaccaatgatcac	Protospacer
******************************

45. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_011104 (Lactobacillus phage Lrm1, complete genome) position: , mismatch: 0, identity: 1.0

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgaccaatgatcac	Protospacer
******************************

46. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 0, identity: 1.0

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgaccaatgatcac	Protospacer
******************************

47. spacer 7.11|1392744|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP025078 (Enterococcus faecium strain LS170308 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

taaattcatgtcgcagcttaccaatcccaa	CRISPR spacer
taaattcatgtcgcagcttaccaatcccaa	Protospacer
******************************

48. spacer 7.11|1392744|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_009751 (Lactococcus lactis subsp. lactis K214 plasmid pK214, complete sequence) position: , mismatch: 0, identity: 1.0

taaattcatgtcgcagcttaccaatcccaa	CRISPR spacer
taaattcatgtcgcagcttaccaatcccaa	Protospacer
******************************

49. spacer 7.11|1392744|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP038167 (Enterococcus faecium strain SC3-1 plasmid pSC3-1, complete sequence) position: , mismatch: 0, identity: 1.0

taaattcatgtcgcagcttaccaatcccaa	CRISPR spacer
taaattcatgtcgcagcttaccaatcccaa	Protospacer
******************************

50. spacer 7.11|1392744|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP028728 (Enterococcus faecium strain FSIS1608820 plasmid pFSIS1608820, complete sequence) position: , mismatch: 0, identity: 1.0

taaattcatgtcgcagcttaccaatcccaa	CRISPR spacer
taaattcatgtcgcagcttaccaatcccaa	Protospacer
******************************

51. spacer 7.13|1392876|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to EU246945 (Lactobacillus phage Lrm1, complete sequence) position: , mismatch: 0, identity: 1.0

agcaaaaaatatttggcagttgatgcagaa	CRISPR spacer
agcaaaaaatatttggcagttgatgcagaa	Protospacer
******************************

52. spacer 7.13|1392876|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_011104 (Lactobacillus phage Lrm1, complete genome) position: , mismatch: 0, identity: 1.0

agcaaaaaatatttggcagttgatgcagaa	CRISPR spacer
agcaaaaaatatttggcagttgatgcagaa	Protospacer
******************************

53. spacer 7.13|1392876|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 0, identity: 1.0

agcaaaaaatatttggcagttgatgcagaa	CRISPR spacer
agcaaaaaatatttggcagttgatgcagaa	Protospacer
******************************

54. spacer 7.14|1392942|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 0, identity: 1.0

acgggcttagacacactcacgtttcctatt	CRISPR spacer
acgggcttagacacactcacgtttcctatt	Protospacer
******************************

55. spacer 6.6|1389654|30|NZ_CP014201|CRISPRCasFinder,CRT matches to MN830259 (Lactobacillus phage JNU_P10, complete genome) position: , mismatch: 1, identity: 0.967

taggcgactgatgacaagtctcttatgctg	CRISPR spacer
taggcgactgatgacaagcctcttatgctg	Protospacer
******************.***********

56. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_028835 (Lactobacillus phage CL2, complete genome) position: , mismatch: 1, identity: 0.967

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
agtaagcaaatcgatgacaataagaatggg	Protospacer
************.*****************

57. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KR905066 (Lactobacillus phage CL1, complete genome) position: , mismatch: 1, identity: 0.967

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
agtaagcaaatcgatgacaataagaatggg	Protospacer
************.*****************

58. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_028911 (Lactobacillus phage iLp1308, complete genome) position: , mismatch: 1, identity: 0.967

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
agtaagcaaatcgatgacaataagaatggg	Protospacer
************.*****************

59. spacer 6.10|1389918|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 1, identity: 0.967

tggcggctgccaaatctgcaatgctacttt	CRISPR spacer
tggccgctgccaaatctgcaatgctacttt	Protospacer
**** *************************

60. spacer 6.13|1390116|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 1, identity: 0.967

gcacagtgaatgtgatgccgcatagcaaag	CRISPR spacer
gcacagtaaatgtgatgccgcatagcaaag	Protospacer
*******.**********************

61. spacer 7.2|1392150|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_007501 (Lactobacillus phage Lc-Nu, complete genome) position: , mismatch: 1, identity: 0.967

aaagcttttcaaagtcactctctaacgtgc	CRISPR spacer
aaagcttttcaaaatcactctctaacgtgc	Protospacer
*************.****************

62. spacer 7.2|1392150|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to AY131267 (Bacteriophage Lc-Nu, complete genome) position: , mismatch: 1, identity: 0.967

aaagcttttcaaagtcactctctaacgtgc	CRISPR spacer
aaagcttttcaaaatcactctctaacgtgc	Protospacer
*************.****************

63. spacer 7.2|1392150|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 1, identity: 0.967

aaagcttttcaaagtcactctctaacgtgc	CRISPR spacer
agagcttttcaaagtcactctctaacgtgc	Protospacer
*.****************************

64. spacer 7.2|1392150|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 1, identity: 0.967

aaagcttttcaaagtcactctctaacgtgc	CRISPR spacer
agagcttttcaaagtcactctctaacgtgc	Protospacer
*.****************************

65. spacer 7.2|1392150|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 1, identity: 0.967

aaagcttttcaaagtcactctctaacgtgc	CRISPR spacer
agagcttttcaaagtcactctctaacgtgc	Protospacer
*.****************************

66. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_AP012545 (Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence) position: , mismatch: 1, identity: 0.967

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccagcatgaa	Protospacer
*********************** ******

67. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_AP012545 (Lactobacillus casei DSM 20011 = JCM 1134 = ATCC 393 plasmid pLBCZ-1, complete sequence) position: , mismatch: 1, identity: 0.967

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccagcatgaa	Protospacer
*********************** ******

68. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP014202 (Lactobacillus rhamnosus strain BFE5264 plasmid, complete sequence) position: , mismatch: 1, identity: 0.967

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccagcatgaa	Protospacer
*********************** ******

69. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP014202 (Lactobacillus rhamnosus strain BFE5264 plasmid, complete sequence) position: , mismatch: 1, identity: 0.967

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccagcatgaa	Protospacer
*********************** ******

70. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to KR905066 (Lactobacillus phage CL1, complete genome) position: , mismatch: 1, identity: 0.967

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgaccaacgatcac	Protospacer
***********************.******

71. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to AP018361 (Lactobacillus phage T25 DNA, complete genome) position: , mismatch: 1, identity: 0.967

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtgacctaagcagtgaccaatgatcac	Protospacer
******.***********************

72. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_028835 (Lactobacillus phage CL2, complete genome) position: , mismatch: 1, identity: 0.967

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgaccaacgatcac	Protospacer
***********************.******

73. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 1, identity: 0.967

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtgacctaagcagtgaccaatgatcac	Protospacer
******.***********************

74. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 1, identity: 0.967

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtgacctaagcagtgaccaatgatcac	Protospacer
******.***********************

75. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 1, identity: 0.967

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgaccaacgatcac	Protospacer
***********************.******

76. spacer 7.9|1392612|30|NZ_CP014201|CRISPRCasFinder,CRT matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 1, identity: 0.967

acgctgataagccccaagaacatcatggga	CRISPR spacer
tcgctgataagccccaagaacatcatggga	Protospacer
 *****************************

77. spacer 7.14|1392942|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to EU246945 (Lactobacillus phage Lrm1, complete sequence) position: , mismatch: 1, identity: 0.967

acgggcttagacacactcacgtttcctatt	CRISPR spacer
atgggcttagacacactcacgtttcctatt	Protospacer
*.****************************

78. spacer 7.14|1392942|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_011104 (Lactobacillus phage Lrm1, complete genome) position: , mismatch: 1, identity: 0.967

acgggcttagacacactcacgtttcctatt	CRISPR spacer
atgggcttagacacactcacgtttcctatt	Protospacer
*.****************************

79. spacer 6.6|1389654|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_028835 (Lactobacillus phage CL2, complete genome) position: , mismatch: 2, identity: 0.933

taggcgactgatgacaagtctcttatgctg	CRISPR spacer
taggcgactgatgacaagcctcttctgctg	Protospacer
******************.***** *****

80. spacer 6.6|1389654|30|NZ_CP014201|CRISPRCasFinder,CRT matches to KR905066 (Lactobacillus phage CL1, complete genome) position: , mismatch: 2, identity: 0.933

taggcgactgatgacaagtctcttatgctg	CRISPR spacer
taggcgactgatgacaagcctcttctgctg	Protospacer
******************.***** *****

81. spacer 6.6|1389654|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_028911 (Lactobacillus phage iLp1308, complete genome) position: , mismatch: 2, identity: 0.933

taggcgactgatgacaagtctcttatgctg	CRISPR spacer
taggcgactgatgacaagcctcttctgctg	Protospacer
******************.***** *****

82. spacer 6.7|1389720|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_028835 (Lactobacillus phage CL2, complete genome) position: , mismatch: 2, identity: 0.933

taccaagcctgatggcgatgccattcaaga	CRISPR spacer
gaccaaacctgatggcgatgccattcaaga	Protospacer
 *****.***********************

83. spacer 6.7|1389720|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KR905066 (Lactobacillus phage CL1, complete genome) position: , mismatch: 2, identity: 0.933

taccaagcctgatggcgatgccattcaaga	CRISPR spacer
gaccaaacctgatggcgatgccattcaaga	Protospacer
 *****.***********************

84. spacer 6.7|1389720|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_028911 (Lactobacillus phage iLp1308, complete genome) position: , mismatch: 2, identity: 0.933

taccaagcctgatggcgatgccattcaaga	CRISPR spacer
gaccaaacctgatggcgatgccattcaaga	Protospacer
 *****.***********************

85. spacer 6.10|1389918|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_007501 (Lactobacillus phage Lc-Nu, complete genome) position: , mismatch: 2, identity: 0.933

tggcggctgccaaatctgcaatgctacttt	CRISPR spacer
tgtccgctgccaaatctgcaatgctacttt	Protospacer
** * *************************

86. spacer 6.10|1389918|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AY131267 (Bacteriophage Lc-Nu, complete genome) position: , mismatch: 2, identity: 0.933

tggcggctgccaaatctgcaatgctacttt	CRISPR spacer
tgtccgctgccaaatctgcaatgctacttt	Protospacer
** * *************************

87. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 2, identity: 0.933

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
gatgcagtgcatcaatcgcggcttgcgctt	Protospacer
*******.*****************.****

88. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 2, identity: 0.933

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
gatgcagtgcatcaatcgcggcttgcgctt	Protospacer
*******.*****************.****

89. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 2, identity: 0.933

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
gatgcagtgcatcaatcgcggcttgcgctt	Protospacer
*******.*****************.****

90. spacer 6.13|1390116|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MF999224 (Lactobacillus phage LJ, complete genome) position: , mismatch: 2, identity: 0.933

gcacagtgaatgtgatgccgcatagcaaag	CRISPR spacer
gcacagtaaatgtgatgccacatagcaaag	Protospacer
*******.***********.**********

91. spacer 6.13|1390116|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 2, identity: 0.933

gcacagtgaatgtgatgccgcatagcaaag	CRISPR spacer
gcacagtaaatgtgatgccgcacagcaaag	Protospacer
*******.**************.*******

92. spacer 7.1|1392084|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MT758689 (Lactobacillus phage Lbab1, complete genome) position: , mismatch: 2, identity: 0.933

agggtttacagtgactaactgtttcccata	CRISPR spacer
agggtttacagtgactagctgttttccata	Protospacer
*****************.******.*****

93. spacer 7.1|1392084|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MT758689 (Lactobacillus phage Lbab1, complete genome) position: , mismatch: 2, identity: 0.933

agggtttacagtgactaactgtttcccata	CRISPR spacer
agggttcacagtgactaactgtttgccata	Protospacer
******.***************** *****

94. spacer 7.1|1392084|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 2, identity: 0.933

agggtttacagtgactaactgtttcccata	CRISPR spacer
aggattaacagtgactaactgtttcccata	Protospacer
***.** ***********************

95. spacer 7.1|1392084|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MK504443 (Lactobacillus phage 521B, complete genome) position: , mismatch: 2, identity: 0.933

agggtttacagtgactaactgtttcccata	CRISPR spacer
aggattaacagtgactaactgtttcccata	Protospacer
***.** ***********************

96. spacer 7.4|1392282|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to EU246945 (Lactobacillus phage Lrm1, complete sequence) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

97. spacer 7.4|1392282|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

98. spacer 7.4|1392282|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_011104 (Lactobacillus phage Lrm1, complete genome) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

99. spacer 7.4|1392282|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_028911 (Lactobacillus phage iLp1308, complete genome) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

100. spacer 7.4|1392282|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

101. spacer 7.6|1392414|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to EU246945 (Lactobacillus phage Lrm1, complete sequence) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

102. spacer 7.6|1392414|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to AJ251789 (Lactobacillus casei bacteriophage A2 complete genome) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

103. spacer 7.6|1392414|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_011104 (Lactobacillus phage Lrm1, complete genome) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

104. spacer 7.6|1392414|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_028911 (Lactobacillus phage iLp1308, complete genome) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

105. spacer 7.6|1392414|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_004112 (Lactobacillus phage A2, complete genome) position: , mismatch: 2, identity: 0.933

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggtcgagttg	Protospacer
**************************.**.

106. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to KC171647 (Lactobacillus phage PL-1, complete genome) position: , mismatch: 2, identity: 0.933

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgacccacgatcac	Protospacer
********************* *.******

107. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_022756 (Lactobacillus phage J-1, complete genome) position: , mismatch: 2, identity: 0.933

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgacccacgatcac	Protospacer
********************* *.******

108. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to MH983004 (Lactobacillus phage BH1, complete genome) position: , mismatch: 2, identity: 0.933

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
gctgtggcctaagcagtgacccacgatcac	Protospacer
********************* *.******

109. spacer 7.11|1392744|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_020237 (Staphylococcus hyicus plasmid pSTE1 complete sequence) position: , mismatch: 2, identity: 0.933

taaattcatgtcgcagcttaccaatcccaa	CRISPR spacer
taaattcatgtcgcaacttaccaataccaa	Protospacer
***************.********* ****

110. spacer 7.11|1392744|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP013627 (Staphylococcus aureus strain RIVM1183 plasmid pRIVM1183, complete sequence) position: , mismatch: 2, identity: 0.933

taaattcatgtcgcagcttaccaatcccaa	CRISPR spacer
taaattcatgtcgcaacttaccaataccaa	Protospacer
***************.********* ****

111. spacer 7.15|1393008|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_012530 (Lactobacillus phage Lb338-1, complete genome) position: , mismatch: 2, identity: 0.933

gactactagccacttgactaacctgctgcg	CRISPR spacer
gactactagctacttgactaacctgctgtg	Protospacer
**********.*****************.*

112. spacer 7.16|1393074|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_012530 (Lactobacillus phage Lb338-1, complete genome) position: , mismatch: 2, identity: 0.933

ctttactttcaccaatttcagtatcaaaat	CRISPR spacer
ctttactttcaccaatttcagtaccaaagt	Protospacer
***********************.****.*

113. spacer 1.1|73123|30|NZ_CP014201|CRISPRCasFinder matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 3, identity: 0.9

ttagctatggctacgttagccgcacggagc	CRISPR spacer
taagttatggatacgttagccgcacggagc	Protospacer
* **.***** *******************

114. spacer 1.1|73123|30|NZ_CP014201|CRISPRCasFinder matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 3, identity: 0.9

ttagctatggctacgttagccgcacggagc	CRISPR spacer
taagttatggatacgttagccgcacggagc	Protospacer
* **.***** *******************

115. spacer 6.7|1389720|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MN830259 (Lactobacillus phage JNU_P10, complete genome) position: , mismatch: 3, identity: 0.9

taccaagcctgatggcgatgccattcaaga	CRISPR spacer
gaccaaacctgatggtgatgccattcaaga	Protospacer
 *****.********.**************

116. spacer 6.9|1389852|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KR905069 (Lactobacillus phage iLp84, complete genome) position: , mismatch: 3, identity: 0.9

atcatcgtcttcaaatccgcaagtgttacc	CRISPR spacer
atcatcgtcttcaaatccgcaagttttatt	Protospacer
************************ ***..

117. spacer 6.9|1389852|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KU848186 (Lactobacillus phage PLE3, complete genome) position: , mismatch: 3, identity: 0.9

atcatcgtcttcaaatccgcaagtgttacc	CRISPR spacer
atcatcgtcttcaaatccgcaagttttatt	Protospacer
************************ ***..

118. spacer 7.4|1392282|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 3, identity: 0.9

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggttgagttg	Protospacer
***********************.**.**.

119. spacer 7.4|1392282|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to KR905069 (Lactobacillus phage iLp84, complete genome) position: , mismatch: 3, identity: 0.9

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggttgagttg	Protospacer
***********************.**.**.

120. spacer 7.4|1392282|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to KU848186 (Lactobacillus phage PLE3, complete genome) position: , mismatch: 3, identity: 0.9

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggttgagttg	Protospacer
***********************.**.**.

121. spacer 7.6|1392414|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN830258 (Lactobacillus phage JNU_P9, complete genome) position: , mismatch: 3, identity: 0.9

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggttgagttg	Protospacer
***********************.**.**.

122. spacer 7.6|1392414|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to KR905069 (Lactobacillus phage iLp84, complete genome) position: , mismatch: 3, identity: 0.9

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggttgagttg	Protospacer
***********************.**.**.

123. spacer 7.6|1392414|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to KU848186 (Lactobacillus phage PLE3, complete genome) position: , mismatch: 3, identity: 0.9

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
agctgtgtgccctttgctgtggttgagttg	Protospacer
***********************.**.**.

124. spacer 7.15|1393008|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MT758689 (Lactobacillus phage Lbab1, complete genome) position: , mismatch: 3, identity: 0.9

gactactagccacttgactaacctgctgcg	CRISPR spacer
gactactagctacttggctaacctgctgtg	Protospacer
**********.*****.***********.*

125. spacer 7.8|1392546|30|NZ_CP014201|CRISPRCasFinder,CRT matches to KR905068 (Lactobacillus phage iA2, complete genome) position: , mismatch: 4, identity: 0.867

gctgtggcctaagcagtgaccaatgatcac	CRISPR spacer
tttgtggcctaagcagtgaccaacaatcac	Protospacer
 .*********************..*****

126. spacer 7.9|1392612|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP014925 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-1, complete sequence) position: , mismatch: 4, identity: 0.867

acgc-tgataagccccaagaacatcatggga	CRISPR spacer
-cgcttgataagctccaataacatcatgggt	Protospacer
 *** ********.**** ***********

127. spacer 7.9|1392612|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP014913 (Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-1, complete sequence) position: , mismatch: 4, identity: 0.867

acgc-tgataagccccaagaacatcatggga	CRISPR spacer
-cgcttgataagctccaataacatcatgggt	Protospacer
 *** ********.**** ***********

128. spacer 7.10|1392678|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP023440 (Thauera sp. K11 plasmid pTX1, complete sequence) position: , mismatch: 5, identity: 0.833

-tgtcttgcttgtccgcgaacgccttgatcc	CRISPR spacer
ctaccttg-ttgtccgcgaacgcgttgatca	Protospacer
 *..**** ************** ******

129. spacer 6.5|1389588|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP041067 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_3, complete sequence) position: , mismatch: 6, identity: 0.8

aagaagagtgatattgcttccatgacactt	CRISPR spacer
aatcagagtgatattgcttccaggaagttt	Protospacer
**  ****************** ** ..**

130. spacer 6.7|1389720|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

taccaag----cctgatggcgatgccattcaaga	CRISPR spacer
----aaggcgccctgaaggcgatgccaatcaaga	Protospacer
    ***    ***** ********** ******

131. spacer 6.10|1389918|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MN694114 (Marine virus AFVG_250M252, complete genome) position: , mismatch: 6, identity: 0.8

tggcggctgccaaatctgcaatgctacttt	CRISPR spacer
ttgcggttgccaaatcttcaatgctttctt	Protospacer
* ****.********** ******* ..**

132. spacer 7.3|1392216|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694015 (Marine virus AFVG_250M337, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

133. spacer 7.3|1392216|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694354 (Marine virus AFVG_250M116, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

134. spacer 7.3|1392216|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694608 (Marine virus AFVG_250M55, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

135. spacer 7.3|1392216|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694542 (Marine virus AFVG_250M54, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

136. spacer 7.3|1392216|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694156 (Marine virus AFVG_250M53, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

137. spacer 7.5|1392348|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694015 (Marine virus AFVG_250M337, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

138. spacer 7.5|1392348|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694354 (Marine virus AFVG_250M116, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

139. spacer 7.5|1392348|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694608 (Marine virus AFVG_250M55, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

140. spacer 7.5|1392348|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694542 (Marine virus AFVG_250M54, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

141. spacer 7.5|1392348|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694156 (Marine virus AFVG_250M53, complete genome) position: , mismatch: 6, identity: 0.8

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcaatcgc	Protospacer
* *********** ** ********* *

142. spacer 6.3|1389456|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 7, identity: 0.767

aatacaccgtaatcaatttctttcagggct	CRISPR spacer
cttacaccttcatcaatttctttcagcttt	Protospacer
  ****** * ***************  .*

143. spacer 6.3|1389456|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 7, identity: 0.767

aatacaccgtaatcaatttctttcagggct	CRISPR spacer
cttacaccttcatcaatttctttcagcttt	Protospacer
  ****** * ***************  .*

144. spacer 6.3|1389456|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 7, identity: 0.767

aatacaccgtaatcaatttctttcagggct	CRISPR spacer
cttacaccttcatcaatttctttcagcttt	Protospacer
  ****** * ***************  .*

145. spacer 6.3|1389456|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 7, identity: 0.767

aatacaccgtaatcaatttctttcagggct	CRISPR spacer
cttacaccttcatcaatttctttcagcttt	Protospacer
  ****** * ***************  .*

146. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AP014143 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S24-C76, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
aataagcagatcaatgacaataatgattta	Protospacer
*.******.************** .**  .

147. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MN855594 (Siphoviridae sp. isolate 197, complete genome) position: , mismatch: 7, identity: 0.767

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
aaaaatcatatcaatgacaataagaaagat	Protospacer
*. ** ** ***************** *.

148. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AP014148 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S32-C91, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
aataagcagatcaatgacaataatgattta	Protospacer
*.******.************** .**  .

149. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AP014144 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S25-C77, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
aataagcagatcaatgacaataatgattta	Protospacer
*.******.************** .**  .

150. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AP014147 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C4B-MedDCM-OCT-S30-C164, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
aataagcagatcaatgacaataatgattta	Protospacer
*.******.************** .**  .

151. spacer 6.9|1389852|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MT325768 (Psychrobacillus phage Perkons, complete genome) position: , mismatch: 7, identity: 0.767

atcatcgtcttcaaatccgcaagtgttacc---	CRISPR spacer
ttcatcttcttcaaatccgcaa---taaactaa	Protospacer
 ***** ***************   * * *

152. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
ttttcagcgcatcaatcgctgcttctgtct	Protospacer
  * *************** **** **..*

153. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 7, identity: 0.767

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
gtcgacgcgcatcaaccgcgccttgtgctg	Protospacer
* .*  *********.**** ********

154. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015739 (Shinella sp. HZN7 plasmid pShin-03, complete sequence) position: , mismatch: 7, identity: 0.767

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
gccgcagcgcatcgatcgcggcatgtacga	Protospacer
* .**********.******** ***.*

155. spacer 6.14|1390182|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_021559 (Prochlorococcus phage P-SSM3 genomic sequence) position: , mismatch: 7, identity: 0.767

tctatttctggaattaacgtcatcggtagg	CRISPR spacer
tctatttctggaactaacgtgatcacaaca	Protospacer
*************.****** ***.  * .

156. spacer 6.19|1389456|29|NZ_CP014201|PILER-CR matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 7, identity: 0.759

aatacaccgtaatcaatttctttcagggc	CRISPR spacer
cttacaccttcatcaatttctttcagctt	Protospacer
  ****** * ***************  .

157. spacer 6.19|1389456|29|NZ_CP014201|PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 7, identity: 0.759

aatacaccgtaatcaatttctttcagggc	CRISPR spacer
cttacaccttcatcaatttctttcagctt	Protospacer
  ****** * ***************  .

158. spacer 6.19|1389456|29|NZ_CP014201|PILER-CR matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 7, identity: 0.759

aatacaccgtaatcaatttctttcagggc	CRISPR spacer
cttacaccttcatcaatttctttcagctt	Protospacer
  ****** * ***************  .

159. spacer 6.19|1389456|29|NZ_CP014201|PILER-CR matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 7, identity: 0.759

aatacaccgtaatcaatttctttcagggc	CRISPR spacer
cttacaccttcatcaatttctttcagctt	Protospacer
  ****** * ***************  .

160. spacer 7.3|1392216|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694052 (Marine virus AFVG_250M52, complete genome) position: , mismatch: 7, identity: 0.767

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcagtcgc	Protospacer
* *********** ** ********. *

161. spacer 7.5|1392348|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN694052 (Marine virus AFVG_250M52, complete genome) position: , mismatch: 7, identity: 0.767

tagtagcatcgattaattacaagcaaaccg	CRISPR spacer
ttgtagcatcgatgaaatacaagcagtcgc	Protospacer
* *********** ** ********. *

162. spacer 7.10|1392678|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 7, identity: 0.767

tgtcttgcttgtccgcgaacgccttgatcc	CRISPR spacer
tggacgccttgtccgcgaacgccgtgaccc	Protospacer
**  .  **************** ***.**

163. spacer 7.16|1393074|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016746 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pMPJM1, complete sequence) position: , mismatch: 7, identity: 0.767

ctttactttcaccaatttcagtatcaaaat	CRISPR spacer
ttttactttcagcaatttcagtgggaacaa	Protospacer
.********** **********.  ** *

164. spacer 7.16|1393074|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MN582058 (Caudovirales sp. ctOwN3, complete genome) position: , mismatch: 7, identity: 0.767

ctttactttcaccaatttcagtatcaaaat	CRISPR spacer
cagtactttcaccattttcagtatacactt	Protospacer
*  *********** *********  *  *

165. spacer 6.7|1389720|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

taccaagcctgatggcgatgccattcaaga	CRISPR spacer
aaagcgccctgaaggcgatgccaatcaaga	Protospacer
 *   . ***** ********** ******

166. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015507 (Bacillus oceanisediminis 2691 plasmid pBO1, complete sequence) position: , mismatch: 8, identity: 0.733

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
gcatatcaaataaatgacaataaaaatggc	Protospacer
.   * ***** ***********.*****

167. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AB012573 (Vibrio phage Vf33 DNA, complete genome) position: , mismatch: 8, identity: 0.733

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
aagcagcaaatcaacgacaataagatttac	Protospacer
*.  **********.********** * .

168. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_005948 (Vibrio phage Vf33, complete genome) position: , mismatch: 8, identity: 0.733

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
aagcagcaaatcaacgacaataagatttac	Protospacer
*.  **********.********** * .

169. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_005949 (Vibrio phage Vf12 DNA, complete genome) position: , mismatch: 8, identity: 0.733

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
aagcagcaaatcaacgacaataagatttac	Protospacer
*.  **********.********** * .

170. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 8, identity: 0.733

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
cgaccagcgcatcaatcgccacttgtgcag	Protospacer
 .  *************** .*******

171. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_001956 (Vibrio phage fs2, complete genome) position: , mismatch: 8, identity: 0.733

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
ccccaaccgcatcaagggcggcttgtgctt	Protospacer
  .  * ********  *************

172. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AB002632 (Vibrio phage fs2 DNA, complete genome) position: , mismatch: 8, identity: 0.733

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
ccccaaccgcatcaagggcggcttgtgctt	Protospacer
  .  * ********  *************

173. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_021562 (Vibrio phage VFJ, complete genome) position: , mismatch: 8, identity: 0.733

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
ccccaaccgcatcaagggcggcttgtgctt	Protospacer
  .  * ********  *************

174. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040048 (Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
tacgcagtgcatcaatcgcagcttgtttag	Protospacer
 *.****.***********.****** .

175. spacer 7.1|1392084|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NC_041925 (Proteus phage VB_PmiS-Isfahan, complete genome) position: , mismatch: 8, identity: 0.733

agggtttacagtgactaactgtttcccata	CRISPR spacer
aatatttacagtgactacctgtttcaagtg	Protospacer
*. .************* *******  .*.

176. spacer 7.1|1392084|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MG575420 (Proteus phage vB_PmiP_RS10pmA, complete genome) position: , mismatch: 8, identity: 0.733

agggtttacagtgactaactgtttcccata	CRISPR spacer
aatatttacagtgactacctgtttcaagtg	Protospacer
*. .************* *******  .*.

177. spacer 7.1|1392084|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to MN840487 (Proteus phage 2207-N35, complete genome) position: , mismatch: 8, identity: 0.733

agggtttacagtgactaactgtttcccata	CRISPR spacer
aatatttacagtgactacctgtttcaagtg	Protospacer
*. .************* *******  .*.

178. spacer 7.4|1392282|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039224 (Piscirickettsia salmonis strain NVI 5692 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
tattcattgcactttgctgtggtcgattta	Protospacer
 ..*   *** *************** ***

179. spacer 7.6|1392414|30|NZ_CP014201|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039224 (Piscirickettsia salmonis strain NVI 5692 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

agctgtgtgccctttgctgtggtcgaatta	CRISPR spacer
tattcattgcactttgctgtggtcgattta	Protospacer
 ..*   *** *************** ***

180. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to MN585195 (Pseudomonas phage AUS531phi, complete genome) position: , mismatch: 8, identity: 0.733

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ggccagcgaaagcttcgttgccatcaccca	Protospacer
    ************ *********.  *

181. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP009649 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_2, complete sequence) position: , mismatch: 8, identity: 0.733

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
agtgtttgaaaacttctttggcatcatgaa	Protospacer
   *  .****.******** *********

182. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
gcccatggaaagcttctttggcagcatgaa	Protospacer
 .  *  ************* ** ******

183. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
gcccatggaaagcttctttggcagcatgaa	Protospacer
 .  *  ************* ** ******

184. spacer 7.9|1392612|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP022492 (Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

acgctgataagccccaagaacatcatggga	CRISPR spacer
ctgctgataagcctcaagcacatcaccaaa	Protospacer
 .***********.**** ******. ..*

185. spacer 7.9|1392612|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP019193 (Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717 plasmid pATCC10717, complete sequence) position: , mismatch: 8, identity: 0.733

acgctgataagccccaagaacatcatggga	CRISPR spacer
ctgctgataagcctcaagcacatcaccaaa	Protospacer
 .***********.**** ******. ..*

186. spacer 7.10|1392678|30|NZ_CP014201|CRISPRCasFinder,CRT matches to KX898400 (Pseudomonas phage JG054, complete genome) position: , mismatch: 8, identity: 0.733

tgtcttgcttgtccgcgaacgccttgatcc	CRISPR spacer
gacccagcttgtccgcgaaaggcttgatca	Protospacer
 ..*. ************* * *******

187. spacer 7.13|1392876|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017944 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

agcaaaaaatatttggcagttgatgcagaa	CRISPR spacer
cgatccaaatatttggcaggcgatgcagac	Protospacer
 *    ************* .********

188. spacer 7.16|1393074|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AY301284 (Enterobacteria phage RB69 gp59 (59), gp32 (32), Frd.3 (frd.3), Frd.2 (frd.2), Frd.1 (frd.1), and Frd (frd) genes, complete cds) position: , mismatch: 8, identity: 0.733

ctttactttcaccaatttcagtatcaaaat	CRISPR spacer
caggagtttcacccatttcagtatcaactg	Protospacer
*   * ******* *************

189. spacer 7.16|1393074|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_041863 (Escherichia coli O157 typing phage 3, complete genome) position: , mismatch: 8, identity: 0.733

ctttactttcaccaatttcagtatcaaaat	CRISPR spacer
caggagtttcacccatttcagtatcaactg	Protospacer
*   * ******* *************

190. spacer 7.16|1393074|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to GU071095 (Synechococcus phage S-SM2, complete genome) position: , mismatch: 8, identity: 0.733

ctttactttcaccaatttcagtatcaaaat----	CRISPR spacer
acttactttcatcaatttcagt----agatccct	Protospacer
 .*********.**********    *.**

191. spacer 7.16|1393074|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KP869111 (Escherichia coli O157 typing phage 13, partial genome) position: , mismatch: 8, identity: 0.733

ctttactttcaccaatttcagtatcaaaat	CRISPR spacer
caggagtttcacccatttcagtatcaactg	Protospacer
*   * ******* *************

192. spacer 7.16|1393074|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KP869104 (Escherichia coli O157 typing phage 6, complete genome) position: , mismatch: 8, identity: 0.733

ctttactttcaccaatttcagtatcaaaat	CRISPR spacer
caggagtttcacccatttcagtatcaactg	Protospacer
*   * ******* *************

193. spacer 7.16|1393074|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AY303349 (Enterobacteria phage RB69, complete genome) position: , mismatch: 8, identity: 0.733

ctttactttcaccaatttcagtatcaaaat	CRISPR spacer
caggagtttcacccatttcagtatcaactg	Protospacer
*   * ******* *************

194. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_002473 (Vibrio parahaemolyticus plasmid pO3K6 DNA, complete sequence) position: , mismatch: 9, identity: 0.7

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
gagcagcaaatcaatgacaacaagatttat	Protospacer
..  ****************.**** * .

195. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AB043678 (Vibrio phage VfO3K6 DNA, complete genome) position: , mismatch: 9, identity: 0.7

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
gagcagcaaatcaatgacaacaagatttat	Protospacer
..  ****************.**** * .

196. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to AB043679 (Vibrio phage VfO4K68 DNA, complete genome) position: , mismatch: 9, identity: 0.7

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
gagcagcaaatcaatgacaacaagatttat	Protospacer
..  ****************.**** * .

197. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_002363 (Vibrio phage VfO4K68, complete genome) position: , mismatch: 9, identity: 0.7

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
gagcagcaaatcaatgacaacaagatttat	Protospacer
..  ****************.**** * .

198. spacer 6.8|1389786|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_002362 (Vibrio phage VfO3K6, complete genome) position: , mismatch: 9, identity: 0.7

agtaagcaaatcaatgacaataagaatggg	CRISPR spacer
gagcagcaaatcaatgacaacaagatttat	Protospacer
..  ****************.**** * .

199. spacer 6.11|1389984|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013633 (Rhizobium sp. N324 plasmid pRspN324c, complete sequence) position: , mismatch: 9, identity: 0.7

tgagacgtcttccgtggctcaagcaaggcg	CRISPR spacer
attcccgtcttccgtgtctcatgcaaggtc	Protospacer
     *********** **** ******.

200. spacer 6.12|1390050|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044976 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence) position: , mismatch: 9, identity: 0.7

gatgcagcgcatcaatcgcggcttgtgctt	CRISPR spacer
tgggcagcgcatcgatggcggcttgtttga	Protospacer
 . **********.** ********* .

201. spacer 6.14|1390182|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MK448851 (Streptococcus phage Javan14, complete genome) position: , mismatch: 9, identity: 0.7

tctatttctggaattaacgtcatcggtagg	CRISPR spacer
tctatttctggaaaaaacgtcatgaaagcc	Protospacer
*************  ******** .. .

202. spacer 6.17|1390381|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 9, identity: 0.7

gaacagcagaagacatcacaatcaacactg	CRISPR spacer
gccaagcaggagacatcacaatcaagtaca	Protospacer
*   *****.***************   ..

203. spacer 6.17|1390381|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KJ094025 (Listeria phage LP-032 contig 2, partial genome) position: , mismatch: 9, identity: 0.7

gaacagcagaagacatcacaatcaacactg	CRISPR spacer
gccaagcaggagacatcacaatcaagtaca	Protospacer
*   *****.***************   ..

204. spacer 6.17|1390381|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 9, identity: 0.7

gaacagcagaagacatcacaatcaacactg	CRISPR spacer
gccaagcaggagacatcacaatcaagtaca	Protospacer
*   *****.***************   ..

205. spacer 6.17|1390381|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 9, identity: 0.7

gaacagcagaagacatcacaatcaacactg	CRISPR spacer
gccaagcaggagacatcacaatcaagtaca	Protospacer
*   *****.***************   ..

206. spacer 6.17|1390381|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 9, identity: 0.7

gaacagcagaagacatcacaatcaacactg	CRISPR spacer
gccaagcaggagacatcacaatcaagtaca	Protospacer
*   *****.***************   ..

207. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 9, identity: 0.7

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ggctgccgaaagctgctttgccatcacgat	Protospacer
    . ******** ***********.**

208. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 9, identity: 0.7

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ggctgccgaaagctgctttgccatcacgat	Protospacer
    . ******** ***********.**

209. spacer 7.13|1392876|30|NZ_CP014201|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032486 (Neokomagataea tanensis strain AH13 = NBRC 106556 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

agcaaaaaatatttggcagttgatgcagaa	CRISPR spacer
tctgggaaatatttagcagctgatgcagat	Protospacer
  ....********.****.*********

210. spacer 6.1|1389324|30|NZ_CP014201|CRISPRCasFinder,CRT matches to MH940212 (Salmonella phage PS5, complete genome) position: , mismatch: 10, identity: 0.667

tgccgcgtcgatctttgtcaatacccgagt	CRISPR spacer
aattcaaaagacctttgtcaatacccgagt	Protospacer
 ...  .  **.******************

211. spacer 6.1|1389324|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NC_022772 (Salmonella phage Marshall, complete genome) position: , mismatch: 10, identity: 0.667

tgccgcgtcgatctttgtcaatacccgagt	CRISPR spacer
aattcaaaagacctttgtcaatacccgagt	Protospacer
 ...  .  **.******************

212. spacer 6.1|1389324|30|NZ_CP014201|CRISPRCasFinder,CRT matches to MH688040 (Salmonella phage Mooltan, complete genome) position: , mismatch: 10, identity: 0.667

tgccgcgtcgatctttgtcaatacccgagt	CRISPR spacer
aattcaaaagacctttgtcaatacccgagt	Protospacer
 ...  .  **.******************

213. spacer 6.1|1389324|30|NZ_CP014201|CRISPRCasFinder,CRT matches to KF669654 (Salmonella phage Maynard, complete genome) position: , mismatch: 10, identity: 0.667

tgccgcgtcgatctttgtcaatacccgagt	CRISPR spacer
aattcaaaagacctttgtcaatacccgagt	Protospacer
 ...  .  **.******************

214. spacer 6.1|1389324|30|NZ_CP014201|CRISPRCasFinder,CRT matches to MN066127 (Salmonella phage Matapan, complete genome) position: , mismatch: 10, identity: 0.667

tgccgcgtcgatctttgtcaatacccgagt	CRISPR spacer
aattcaaaagacctttgtcaatacccgagt	Protospacer
 ...  .  **.******************

215. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP009266 (Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence) position: , mismatch: 10, identity: 0.667

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
gaaacgcgaaagcttctgtgccatcaaagt	Protospacer
  .. ************ ******** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3542 : 57318

Lactobacillus_phage(61.54%)

holin,tail,transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155772823.1\|3542_4124_+\|tail	phage tail protein	A0A2D1GPC8	Lactobacillus_phage	2.7e-96	95.1
WP_081395908.1\|4134_4350_+	Ig-like domain-containing protein	A0A2D1GPF6	Lactobacillus_phage	9.1e-18	88.1
WP_033571039.1\|4419_4833_+	hypothetical protein	U5U4K9	Lactobacillus_phage	2.4e-51	99.3
WP_049175116.1\|8193_9210_-\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	9.3e-36	33.4
WP_077069244.1\|11009_12917_+\|tail	phage tail family protein	B4XYQ4	Lactobacillus_phage	1.3e-293	79.3
WP_077069245.1\|12916_15856_+\|tail	phage tail protein	B4XYQ5	Lactobacillus_phage	0.0e+00	88.0
WP_077069246.1\|15852_16140_+	hypothetical protein	Q3L0S1	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	3.2e-18	48.9
WP_077069247.1\|16293_16584_+	hypothetical protein	B4XYQ7	Lactobacillus_phage	6.1e-41	89.6
WP_077069248.1\|16576_17023_+\|holin	phage holin	B4XYQ8	Lactobacillus_phage	2.0e-67	98.6
WP_077069249.1\|17033_18332_+	LysM peptidoglycan-binding domain-containing protein	A8YQK7	Lactobacillus_phage	5.6e-203	89.1
WP_019896508.1\|18491_19175_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_016383081.1\|19205_19379_+	hypothetical protein	NA	NA	NA	NA
WP_014569323.1\|20266_20920_-	hypothetical protein	NA	NA	NA	NA
WP_005713641.1\|21098_22283_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.1e-141	66.0
WP_014569324.1\|22405_23899_+	MFS transporter	NA	NA	NA	NA
WP_005688608.1\|24075_24546_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_005687221.1\|24768_26247_+	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_005713248.1\|26243_26969_+	DUF4811 domain-containing protein	NA	NA	NA	NA
WP_014569326.1\|27024_27705_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_014569327.1\|28125_30537_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	69.1
WP_014569330.1\|31153_32797_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_014569331.1\|32801_33512_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_005688621.1\|33597_33813_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_077069250.1\|33945_34776_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_005687236.1\|34772_35273_-	NUDIX hydrolase	NA	NA	NA	NA
WP_005688627.1\|35668_36142_+	glutathione peroxidase	NA	NA	NA	NA
WP_014569332.1\|36248_37457_+	putative C-S lyase	NA	NA	NA	NA
WP_014569335.1\|39116_39383_+	ACT domain-containing protein	NA	NA	NA	NA
WP_014569336.1\|39656_41000_+	PFL family protein	NA	NA	NA	NA
WP_015764885.1\|41165_42233_+	competence protein	NA	NA	NA	NA
WP_005687248.1\|42473_43109_-	DsbA family protein	NA	NA	NA	NA
WP_005713275.1\|43178_43772_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_014569338.1\|43938_44616_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_005687253.1\|44617_45415_+	NAD kinase	NA	NA	NA	NA
WP_014569340.1\|45414_46317_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_014569341.1\|46460_47519_-	FAD:protein FMN transferase	NA	NA	NA	NA
WP_005687259.1\|47734_48373_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_005687260.1\|48392_49211_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_014569342.1\|49414_50455_-	lactonase family protein	NA	NA	NA	NA
WP_077069251.1\|50698_51073_+	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA
WP_003564153.1\|51122_51392_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_014569343.1\|51506_52496_-	GMP reductase	Q4ZCY7	Staphylococcus_virus	6.9e-137	71.3
WP_005688655.1\|52679_53627_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_014568964.1\|54645_56049_+\|transposase	ISLre2-like element ISLrh4 family transposase	NA	NA	NA	NA
WP_005688659.1\|56808_57318_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA

DBSCAN-SWA_2

265104 : 328453

Lactobacillus_phage(82.98%)

tail,head,integrase,portal,capsid,holin,terminase,transposase

attL 266825:266840|attR 299682:299697

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014569018.1\|265104_266601_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_005685821.1\|266803_267373_-	hypothetical protein	NA	NA	NA	NA
266825:266840	attL	NA	NA	NA	NA
WP_005685825.1\|267382_268129_-	hypothetical protein	NA	NA	NA	NA
WP_005685827.1\|268213_270472_-	LTA synthase family protein	W6LM83	Streptococcus_phage	2.6e-155	44.5
WP_005685829.1\|271216_271822_+	VanZ family protein	NA	NA	NA	NA
WP_005685830.1\|272102_272960_+	glucose transporter GlcU	NA	NA	NA	NA
WP_005685831.1\|273156_274497_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_077069286.1\|274623_275808_-\|integrase	site-specific integrase	A0A0P0I3D2	Lactobacillus_phage	1.5e-226	99.7
WP_077069287.1\|275918_276599_-	hypothetical protein	NA	NA	NA	NA
WP_077069288.1\|276614_277013_-	hypothetical protein	NA	NA	NA	NA
WP_077069289.1\|277055_277259_-	hypothetical protein	A0A0P0IQK8	Lactobacillus_phage	8.3e-29	89.6
WP_047676162.1\|277282_277708_-	pyridoxamine 5'-phosphate oxidase family protein	A0A0P0I7K6	Lactobacillus_phage	1.4e-62	98.6
WP_077069290.1\|277911_278598_-	hypothetical protein	NA	NA	NA	NA
WP_032800991.1\|278671_279037_-	hypothetical protein	NA	NA	NA	NA
WP_077069291.1\|279092_279662_-	hypothetical protein	A0A1B0Y834	Lactobacillus_phage	9.1e-41	47.9
WP_077069292.1\|279677_280361_-	LexA family transcriptional regulator	A6M973	Geobacillus_virus	6.5e-09	36.4
WP_077069293.1\|280490_280736_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064656586.1\|280780_281260_-	hypothetical protein	NA	NA	NA	NA
WP_015764912.1\|281681_281912_+	helix-turn-helix domain-containing protein	A0A1B0Y6A3	Lactobacillus_phage	5.5e-37	98.6
WP_005716154.1\|282274_282445_+	hypothetical protein	NA	NA	NA	NA
WP_005711348.1\|282456_283332_+	recombinase RecT	A0A1X9I5N6	Streptococcus_phage	2.0e-58	52.2
WP_077069295.1\|283351_284116_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A0P0IZH9	Lactobacillus_phage	7.6e-75	53.6
WP_077069296.1\|284131_285088_+	DnaD domain protein	A0A1B0Y2R2	Lactobacillus_phage	1.2e-122	89.0
WP_077069297.1\|285100_285586_+	single-stranded DNA-binding protein	U5U726	Lactobacillus_phage	2.6e-60	87.6
WP_077069298.1\|285893_286109_+	helix-turn-helix transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	1.3e-19	65.7
WP_077069299.1\|286105_286555_+	hypothetical protein	B4XYT0	Lactobacillus_phage	1.3e-66	89.2
WP_077069300.1\|286557_286941_+	DUF1064 domain-containing protein	B4XYT1	Lactobacillus_phage	2.7e-65	96.9
WP_077069301.1\|286952_287135_+	hypothetical protein	A8YQM8	Lactobacillus_phage	5.9e-26	93.3
WP_077069302.1\|287131_287341_+	hypothetical protein	D6PSV2	Lactobacillus_phage	7.2e-28	91.3
WP_064535077.1\|287412_287724_+	hypothetical protein	NA	NA	NA	NA
WP_077069303.1\|287713_288079_+	hypothetical protein	C1KFE5	Lactobacillus_virus	1.7e-32	59.5
WP_077069304.1\|288075_288495_+	hypothetical protein	A0A2D1GPA7	Lactobacillus_phage	1.0e-36	56.4
WP_077069305.1\|288491_288674_+	hypothetical protein	A0A0P0I365	Lactobacillus_phage	7.2e-16	63.3
WP_077069306.1\|288752_288938_+	hypothetical protein	A0A0N7IR95	Lactobacillus_phage	1.8e-14	83.0
WP_005711378.1\|289132_289561_+	hypothetical protein	NA	NA	NA	NA
WP_077069307.1\|290082_291216_+	hypothetical protein	A0A2D1GPQ9	Lactobacillus_phage	3.9e-91	46.5
WP_077069908.1\|291208_291532_+	ribonucleoside-diphosphate reductase	A0A0N7IRA2	Lactobacillus_phage	1.0e-49	86.9
WP_191981984.1\|291565_292057_+	sigma-70 region 4 domain-containing protein	A0A0P0IZC1	Lactobacillus_phage	6.6e-72	88.3
WP_077069909.1\|292040_293294_+\|terminase	PBSX family phage terminase large subunit	A0A0P0I3B0	Lactobacillus_phage	1.9e-248	99.3
WP_077069308.1\|293298_294726_+\|portal	phage portal protein	A0A0P0IJV3	Lactobacillus_phage	1.3e-248	93.9
WP_077069309.1\|294691_295684_+\|capsid	minor capsid protein	A0A0P0ID43	Lactobacillus_phage	4.8e-178	95.5
WP_077069310.1\|295808_296462_+	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	1.3e-62	87.8
WP_077069311.1\|296477_297491_+\|capsid	capsid protein	A0A0A7RVZ1	Clostridium_phage	9.0e-23	26.2
WP_077069312.1\|297718_298093_+\|head,tail	phage head-tail connector protein	A0A0P0IZF6	Lactobacillus_phage	1.3e-56	87.9
WP_016386765.1\|298097_298400_+	hypothetical protein	A0A0N7IR97	Lactobacillus_phage	1.1e-48	92.0
WP_077069313.1\|298396_298762_+\|tail	phage tail protein	A0A0P0IUZ3	Lactobacillus_phage	7.6e-57	95.0
WP_003582636.1\|298762_299167_+	DUF3168 domain-containing protein	A0A0P0I3C8	Lactobacillus_phage	6.0e-71	99.3
WP_077069314.1\|299178_299781_+\|tail	phage tail protein	A0A0P0ID88	Lactobacillus_phage	1.4e-100	93.5
299682:299697	attR	NA	NA	NA	NA
WP_048482132.1\|299866_300199_+\|tail	tail assembly chaperone	A0A0P0IQQ6	Lactobacillus_phage	2.5e-51	97.3
WP_077069315.1\|300303_300657_+	hypothetical protein	A0A0P0I7N9	Lactobacillus_phage	6.9e-55	96.6
WP_077069316.1\|300649_303739_+	tape measure protein	A0A0N7IR83	Lactobacillus_phage	2.4e-252	88.5
WP_077069317.1\|303741_305721_+\|tail	phage tail family protein	B4XYQ4	Lactobacillus_phage	3.5e-241	68.8
WP_077069318.1\|305720_308660_+\|tail	phage tail protein	B4XYQ5	Lactobacillus_phage	0.0e+00	90.6
WP_077069246.1\|308656_308944_+	hypothetical protein	Q3L0S1	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	3.2e-18	48.9
WP_077069247.1\|309097_309388_+	hypothetical protein	B4XYQ7	Lactobacillus_phage	6.1e-41	89.6
WP_077069248.1\|309380_309827_+\|holin	phage holin	B4XYQ8	Lactobacillus_phage	2.0e-67	98.6
WP_077069319.1\|309837_311022_+	LysM peptidoglycan-binding domain-containing protein	A0A0P0HRN9	Lactobacillus_phage	3.2e-205	90.1
WP_077069320.1\|311157_311547_+	hypothetical protein	B4XYR0	Lactobacillus_phage	2.4e-64	95.3
WP_081395885.1\|311565_312159_+	hypothetical protein	B4XYR1	Lactobacillus_phage	7.2e-97	93.9
WP_077069321.1\|312155_312398_+	hypothetical protein	B4XYR2	Lactobacillus_phage	4.6e-34	88.8
WP_077069322.1\|312820_314065_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	5.1e-12	22.9
WP_005685833.1\|314460_314748_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_005685835.1\|315043_315895_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_032960936.1\|315894_316638_-	hypothetical protein	NA	NA	NA	NA
WP_005713749.1\|316766_317930_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_077069323.1\|318387_319305_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_005685839.1\|319405_319873_+	nucleoside deaminase	NA	NA	NA	NA
WP_005685842.1\|321305_321443_+	hypothetical protein	NA	NA	NA	NA
WP_005685844.1\|321523_322717_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.0e-54	35.8
WP_005685846.1\|323149_324580_-	C69 family dipeptidase	NA	NA	NA	NA
WP_005685847.1\|324962_325148_-	hypothetical protein	NA	NA	NA	NA
WP_005707453.1\|325140_325476_-	hypothetical protein	NA	NA	NA	NA
WP_005684929.1\|326138_326873_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_070543786.1\|327034_328453_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1110002 : 1127341

Helicoverpa_zea_nudivirus(50.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005685966.1\|1110002_1110761_+\|protease	matrixin family metalloprotease	G9I094	Helicoverpa_zea_nudivirus	2.2e-05	54.3
WP_005685964.1\|1111015_1114618_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_005685962.1\|1115274_1115601_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_077069471.1\|1116277_1117864_+	reverse transcriptase	NA	NA	NA	NA
WP_005685956.1\|1117962_1118343_+\|transposase	transposase	NA	NA	NA	NA
WP_076638878.1\|1118359_1119088_+\|transposase	transposase	NA	NA	NA	NA
WP_070543786.1\|1120024_1121443_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014569018.1\|1121585_1123082_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_005687345.1\|1123195_1123459_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_077069473.1\|1125400_1125919_-	hypothetical protein	NA	NA	NA	NA
WP_077069474.1\|1125959_1126496_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_155772831.1\|1126447_1127341_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.1e-37	33.7

DBSCAN-SWA_4

1163222 : 1232164

Escherichia_phage(21.05%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014569018.1\|1163222_1164719_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_077069482.1\|1164832_1165756_-	glucosyltransferase domain-containing protein	NA	NA	NA	NA
WP_070707012.1\|1166319_1166829_+	hypothetical protein	NA	NA	NA	NA
WP_077069483.1\|1166825_1168202_+	hypothetical protein	NA	NA	NA	NA
WP_081395890.1\|1168305_1168968_-	C39 family peptidase	NA	NA	NA	NA
WP_070543786.1\|1168982_1170401_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_070707009.1\|1171175_1172018_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.9e-34	40.2
WP_032961565.1\|1172077_1173103_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.2e-72	43.9
WP_064656404.1\|1173105_1173678_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.4e-35	44.1
WP_070707007.1\|1173691_1174564_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.6e-97	56.9
WP_077069484.1\|1174858_1176805_-	SH3-like domain-containing protein	F7V9F0	Lactobacillus_virus	4.9e-17	31.0
WP_049175116.1\|1176934_1177951_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	9.3e-36	33.4
WP_070707004.1\|1178189_1179590_-	sugar transferase	NA	NA	NA	NA
WP_005687208.1\|1179857_1180793_-	NAD-dependent epimerase/dehydratase family protein	A0A1V0SKV4	Klosneuvirus	1.5e-35	33.2
WP_005687206.1\|1181230_1181893_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_005687204.1\|1181908_1182553_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_014571459.1\|1182554_1183379_-	glutamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005712878.1\|1183572_1184304_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-37	41.3
WP_047677298.1\|1184617_1185577_-	hypothetical protein	NA	NA	NA	NA
WP_047677299.1\|1185597_1186041_-	hypothetical protein	NA	NA	NA	NA
WP_047677300.1\|1186297_1186750_-	transcriptional repressor	NA	NA	NA	NA
WP_005687187.1\|1186858_1186972_+	putative metal homeostasis protein	NA	NA	NA	NA
WP_005687185.1\|1187172_1187775_-	guanylate kinase	U5J9X2	Bacillus_phage	8.0e-11	29.7
WP_077069485.1\|1187884_1188292_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_048488274.1\|1188687_1189887_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.4e-19	45.5
WP_014571463.1\|1190188_1191460_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	7.2e-86	43.7
WP_077069486.1\|1191865_1192804_-	cation transporter	NA	NA	NA	NA
WP_005687178.1\|1192978_1193314_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024305663.1\|1193464_1194394_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_024305664.1\|1194776_1196555_-	glycoside hydrolase family 13 protein	NA	NA	NA	NA
WP_064658815.1\|1196576_1198988_-	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	4.5e-12	39.8
WP_005692826.1\|1199135_1200581_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_005687171.1\|1200573_1201743_-	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA
WP_005687169.1\|1201739_1202882_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_077069487.1\|1202911_1204975_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_077069488.1\|1205335_1206367_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_077069489.1\|1206518_1207421_-	sortase	NA	NA	NA	NA
WP_061713386.1\|1207794_1208625_-	YitT family protein	M1Q1P6	Streptococcus_phage	3.8e-19	28.2
WP_064658967.1\|1208728_1210660_-	fructose-bisphosphatase class III	NA	NA	NA	NA
WP_005697320.1\|1210961_1211363_-	transcriptional regulator Spx	NA	NA	NA	NA
WP_077069490.1\|1212003_1214154_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A0A8J958	Klebsiella_phage	1.2e-120	36.5
WP_024129339.1\|1214544_1215309_-	tyrosine protein phosphatase	NA	NA	NA	NA
WP_024305672.1\|1215465_1216359_+	LCP family protein	NA	NA	NA	NA
WP_064658965.1\|1217178_1217847_-	sugar transferase	NA	NA	NA	NA
WP_070543786.1\|1218216_1219635_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_077069491.1\|1220244_1221087_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-33	39.1
WP_064520401.1\|1221162_1222188_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.1e-67	42.9
WP_064520402.1\|1222190_1222763_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.3e-34	43.6
WP_064520403.1\|1222802_1223678_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	1.4e-96	59.6
WP_064520404.1\|1223721_1225134_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_191981975.1\|1225226_1226351_-	hypothetical protein	NA	NA	NA	NA
WP_064520406.1\|1226506_1227502_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_077069492.1\|1227511_1228501_-	Stealth CR1 domain-containing protein	NA	NA	NA	NA
WP_064520407.1\|1228543_1229698_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_155736824.1\|1229723_1230983_-	DUF1972 domain-containing protein	NA	NA	NA	NA
WP_155736825.1\|1231231_1232164_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	3.1e-22	34.5

DBSCAN-SWA_5

1504293 : 1570183

Staphylococcus_phage(20.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005686169.1\|1504293_1505475_-\|transposase	transposase	C1KFS0	Lactobacillus_virus	2.1e-100	49.1
WP_005686167.1\|1506427_1507336_-	FMN-binding protein	NA	NA	NA	NA
WP_005686165.1\|1507623_1509522_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005686164.1\|1509694_1510138_+	NusG domain II-containing protein	NA	NA	NA	NA
WP_005686161.1\|1510134_1510722_+	Gx transporter family protein	NA	NA	NA	NA
WP_005686160.1\|1510696_1511674_+	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	2.8e-05	24.8
WP_077069546.1\|1512118_1512616_+	hypothetical protein	NA	NA	NA	NA
WP_077069548.1\|1513435_1514311_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.4e-18	32.0
WP_077069549.1\|1514304_1515543_-	hypothetical protein	NA	NA	NA	NA
WP_077069550.1\|1515532_1516648_-	ABC transporter permease	NA	NA	NA	NA
WP_155772835.1\|1517106_1517793_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_049174661.1\|1517789_1518845_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_005686136.1\|1519072_1519612_-	NYN domain-containing protein	NA	NA	NA	NA
WP_005692356.1\|1519612_1520395_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_005692354.1\|1520366_1520795_-	Mini-ribonuclease 3	NA	NA	NA	NA
WP_033571717.1\|1520791_1522198_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	1.0e-53	31.3
WP_077069552.1\|1522334_1523729_-	FAD-binding protein	NA	NA	NA	NA
WP_077069553.1\|1523851_1524421_-	hypothetical protein	NA	NA	NA	NA
WP_077069554.1\|1524598_1525780_-\|transposase	transposase	C1KFS0	Lactobacillus_virus	3.1e-99	48.6
WP_005686122.1\|1527169_1528663_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_077069555.1\|1529334_1530165_-\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA
WP_077069556.1\|1530178_1531195_-	hypothetical protein	NA	NA	NA	NA
WP_077069557.1\|1531191_1531578_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_077069558.1\|1531769_1533086_-	MucBP domain-containing protein	NA	NA	NA	NA
WP_077069559.1\|1533398_1534514_-	hypothetical protein	NA	NA	NA	NA
WP_077069560.1\|1534534_1535899_-	DNA repair protein RadA	NA	NA	NA	NA
WP_005686110.1\|1535918_1536458_-	dUTP diphosphatase	J9PV85	Bacillus_phage	4.4e-37	48.0
WP_005686109.1\|1537106_1537397_+	N-acetyltransferase	NA	NA	NA	NA
WP_077069562.1\|1537691_1539011_+	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	1.0e-63	35.8
WP_005686106.1\|1539155_1540502_+	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	4.8e-72	35.7
WP_005686104.1\|1540718_1541819_+	ABC transporter	NA	NA	NA	NA
WP_077069563.1\|1541815_1543012_+	ABC transporter permease	NA	NA	NA	NA
WP_005686102.1\|1543025_1543901_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.1e-12	25.9
WP_077069564.1\|1544052_1546107_+	KUP/HAK/KT family potassium transporter	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	7.3e-64	33.5
WP_077069565.1\|1546313_1548944_-	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	2.4e-83	38.7
WP_077069566.1\|1549243_1549831_-	CBS domain-containing protein	NA	NA	NA	NA
WP_077069567.1\|1550002_1550674_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_077069568.1\|1550831_1551950_+	low temperature requirement protein A	NA	NA	NA	NA
WP_005686095.1\|1551968_1552253_+	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_047677419.1\|1552498_1553614_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_077069569.1\|1553776_1553986_-	CsbD family protein	NA	NA	NA	NA
WP_005686089.1\|1555305_1555563_-	hypothetical protein	NA	NA	NA	NA
WP_005686086.1\|1555752_1555959_-	hypothetical protein	NA	NA	NA	NA
WP_005686084.1\|1556158_1556413_-	hypothetical protein	NA	NA	NA	NA
WP_095691935.1\|1557086_1557874_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_003582473.1\|1558248_1558797_-	DNA-binding protein	NA	NA	NA	NA
WP_003582479.1\|1558806_1559028_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_077069571.1\|1559069_1560968_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.9e-104	37.2
WP_005688111.1\|1561173_1561845_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_031547128.1\|1561849_1563097_-	ABC transporter permease	NA	NA	NA	NA
WP_005688112.1\|1563074_1563818_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-27	33.5
WP_003587210.1\|1564064_1564532_-	DNA starvation/stationary phase protection protein	A0A222Z0F3	Streptomyces_phage	1.6e-06	29.2
WP_005688131.1\|1564652_1565336_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.6e-60	53.3
WP_005688133.1\|1565350_1565533_-	hypothetical protein	NA	NA	NA	NA
WP_003589707.1\|1565653_1565932_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003589709.1\|1565933_1566293_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_003589711.1\|1566446_1567316_-	hypothetical protein	NA	NA	NA	NA
WP_031547137.1\|1567318_1568557_-	ATP-binding protein	NA	NA	NA	NA
WP_155772837.1\|1569395_1570183_-\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1588900 : 1629526

Bacillus_phage(25.0%)

transposase,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005687851.1\|1588900_1589191_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005686876.1\|1590700_1592056_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_005686874.1\|1592235_1592646_-	hypothetical protein	NA	NA	NA	NA
WP_031547267.1\|1592706_1594086_-\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_077069577.1\|1594098_1596291_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	6.2e-37	25.6
WP_005686869.1\|1596566_1596719_-	hypothetical protein	NA	NA	NA	NA
WP_005686867.1\|1596905_1598201_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_005686865.1\|1598205_1598982_+	LytTR family transcriptional regulator DNA-binding domain-containing protein	NA	NA	NA	NA
WP_005686864.1\|1600095_1600341_-	hypothetical protein	NA	NA	NA	NA
WP_031546828.1\|1600590_1600890_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005686855.1\|1601067_1601226_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_005686851.1\|1601694_1601880_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_005686849.1\|1601939_1602125_-	hypothetical protein	NA	NA	NA	NA
WP_005686847.1\|1602510_1602696_-	hypothetical protein	NA	NA	NA	NA
WP_077069580.1\|1602745_1603552_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_005686843.1\|1603872_1604313_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_005686841.1\|1604367_1605795_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	6.1e-33	26.7
WP_005686839.1\|1605967_1606300_-	hypothetical protein	NA	NA	NA	NA
WP_005686837.1\|1606590_1606932_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_005686835.1\|1607106_1608060_-	aldo/keto reductase	NA	NA	NA	NA
WP_077069581.1\|1608529_1609264_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_005686831.1\|1609293_1610439_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_077069582.1\|1610463_1610781_-	hypothetical protein	NA	NA	NA	NA
WP_005686828.1\|1610830_1612210_-	class II fumarate hydratase	NA	NA	NA	NA
WP_005686826.1\|1612385_1613129_-	hypothetical protein	NA	NA	NA	NA
WP_005686824.1\|1613654_1613792_-	hypothetical protein	NA	NA	NA	NA
WP_099981497.1\|1613775_1615353_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_005686820.1\|1615782_1618500_+	HAD-IC family P-type ATPase	M1HJQ2	Paramecium_bursaria_Chlorella_virus	1.9e-59	27.5
WP_005686819.1\|1618788_1619154_+	hypothetical protein	NA	NA	NA	NA
WP_005686817.1\|1619468_1620839_-	MFS transporter	NA	NA	NA	NA
WP_005686815.1\|1620872_1622402_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_005692195.1\|1622505_1622700_+	hypothetical protein	NA	NA	NA	NA
WP_005686811.1\|1622846_1623455_+	cation transporter	NA	NA	NA	NA
WP_005686809.1\|1623574_1623907_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005686806.1\|1623997_1624939_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005686804.1\|1624935_1625829_-	metal ABC transporter permease	NA	NA	NA	NA
WP_005686802.1\|1625825_1626569_-	metal ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.6e-16	31.2
WP_005686799.1\|1626908_1627178_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_005686796.1\|1627262_1627382_-	putative metal homeostasis protein	NA	NA	NA	NA
WP_070543786.1\|1628107_1629526_-\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1755775 : 1764097

Streptococcus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031546590.1\|1755775_1757143_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	5.2e-151	61.3
WP_010491202.1\|1757153_1757429_+	hypothetical protein	NA	NA	NA	NA
WP_031546588.1\|1757425_1757686_+	hypothetical protein	NA	NA	NA	NA
WP_031546586.1\|1758001_1759192_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	1.1e-93	43.4
WP_031546584.1\|1759181_1759508_+	hypothetical protein	NA	NA	NA	NA
WP_031546582.1\|1759638_1760373_+	site-specific DNA-methyltransferase	A0A2K8IKC3	Lactococcus_phage	1.1e-67	53.6
WP_003606383.1\|1760471_1760693_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	1.7e-27	83.6
WP_031546580.1\|1760696_1761194_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-35	45.2
WP_010491186.1\|1761255_1761648_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	6.5e-46	73.6
WP_031546577.1\|1761631_1764097_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	64.4

DBSCAN-SWA_8

1775149 : 1867998

Lactobacillus_phage(15.0%)

holin,transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002816285.1\|1775149_1775401_-\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	9.2e-38	96.4
WP_031547201.1\|1777200_1777917_-	trehalose operon repressor	NA	NA	NA	NA
WP_031547198.1\|1779455_1780562_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_022669518.1\|1780755_1781136_+	DUF1722 domain-containing protein	NA	NA	NA	NA
WP_032962076.1\|1782593_1782803_-	hypothetical protein	NA	NA	NA	NA
WP_077069597.1\|1783080_1783638_-	hypothetical protein	NA	NA	NA	NA
WP_003591692.1\|1783838_1785167_-	MFS transporter	NA	NA	NA	NA
WP_032962027.1\|1785334_1785922_-	recombinase family protein	A0A1V0E035	Clostridioides_phage	5.9e-19	39.5
WP_003582348.1\|1786083_1786512_+	hypothetical protein	NA	NA	NA	NA
WP_003572054.1\|1788058_1788301_+\|transposase	transposase	Q6J1X3	Lactobacillus_phage	4.0e-06	36.1
WP_032962024.1\|1788347_1788998_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.2e-22	31.1
WP_003572050.1\|1788994_1789750_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_032962113.1\|1790909_1791140_+	hypothetical protein	NA	NA	NA	NA
WP_012537722.1\|1791159_1791663_+	hypothetical protein	NA	NA	NA	NA
WP_003586220.1\|1791775_1792426_+	recombinase family protein	M9Q1K0	Clostridium_phage	1.5e-18	37.6
WP_002819966.1\|1792431_1792716_+	BRCT domain-containing protein	NA	NA	NA	NA
WP_077069598.1\|1793139_1794558_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_014571624.1\|1796088_1797000_+	cysteine synthase family protein	A0A1W6JIM2	Lactococcus_phage	5.4e-59	41.2
WP_032953848.1\|1797041_1798226_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_014571622.1\|1798191_1798701_+	serine acetyltransferase	NA	NA	NA	NA
WP_031547296.1\|1798916_1800092_-\|transposase	IS256 family transposase	NA	NA	NA	NA
WP_123021480.1\|1800276_1801439_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.3e-29	32.5
WP_016386516.1\|1803123_1803633_-	DUF308 domain-containing protein	NA	NA	NA	NA
WP_003554840.1\|1805242_1806151_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_014569018.1\|1807895_1809392_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_032962056.1\|1809718_1811833_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	1.4e-118	39.0
WP_032962051.1\|1812137_1812527_+	hypothetical protein	NA	NA	NA	NA
WP_014568964.1\|1812650_1814054_+\|transposase	ISLre2-like element ISLrh4 family transposase	NA	NA	NA	NA
WP_002816607.1\|1814513_1815197_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.1e-60	51.8
WP_021353390.1\|1815758_1815848_+\|holin	putative holin-like toxin	NA	NA	NA	NA
WP_031546167.1\|1816002_1817127_-	hypothetical protein	NA	NA	NA	NA
WP_010491013.1\|1817130_1817346_-	hypothetical protein	NA	NA	NA	NA
WP_031546164.1\|1819610_1820021_-	hypothetical protein	NA	NA	NA	NA
WP_002816285.1\|1821390_1821642_-\|transposase	IS3 family transposase	Q6J1X3	Lactobacillus_phage	9.2e-38	96.4
WP_077069603.1\|1823572_1823971_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_019899265.1\|1823991_1824249_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010490992.1\|1824598_1824871_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_070543786.1\|1826136_1827555_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_005691061.1\|1827887_1828139_-	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_005686643.1\|1828235_1829495_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_155772852.1\|1829572_1829806_-	ATP-dependent nuclease subunit B	NA	NA	NA	NA
WP_005686647.1\|1829985_1831590_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	7.1e-139	48.8
WP_032961799.1\|1831852_1833310_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_005685266.1\|1833675_1834863_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005685263.1\|1835555_1836431_-	DUF1211 domain-containing protein	NA	NA	NA	NA
WP_005713414.1\|1836657_1837338_-	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
WP_005685261.1\|1837381_1837828_-	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_032964331.1\|1838198_1839047_+	lipoate--protein ligase	NA	NA	NA	NA
WP_077069606.1\|1839036_1840389_+	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	3.5e-30	32.5
WP_005685256.1\|1840400_1840853_-	NUDIX hydrolase	NA	NA	NA	NA
WP_014569018.1\|1841896_1843393_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_191981983.1\|1843426_1843564_+	hypothetical protein	NA	NA	NA	NA
WP_005714120.1\|1843626_1844007_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_005716693.1\|1844158_1844593_-	hypothetical protein	NA	NA	NA	NA
WP_077069607.1\|1844681_1845011_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_005691037.1\|1845107_1846082_-	ribose-phosphate diphosphokinase	A0A2K9L8D8	Tupanvirus	2.0e-43	36.1
WP_064520135.1\|1846179_1847568_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L140	Tupanvirus	1.5e-28	33.6
WP_049173594.1\|1847901_1849107_-	VanZ family protein	NA	NA	NA	NA
WP_049173596.1\|1849103_1849952_-	pur operon repressor	A0A1V0SKE5	Klosneuvirus	1.1e-05	26.4
WP_005685245.1\|1850173_1850824_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.1e-16	32.2
WP_005685244.1\|1850820_1851582_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_005685242.1\|1851674_1852553_-	cation transporter	NA	NA	NA	NA
WP_005716698.1\|1852608_1853487_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_005685240.1\|1853732_1853984_-	Veg family protein	NA	NA	NA	NA
WP_077069608.1\|1854329_1855214_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_005685238.1\|1855206_1855776_-	ribonuclease M5	NA	NA	NA	NA
WP_077069609.1\|1855772_1856552_-	TatD family hydrolase	NA	NA	NA	NA
WP_014570140.1\|1856558_1857035_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_005685235.1\|1857264_1858263_+	tagatose 1,6-diphosphate aldolase	NA	NA	NA	NA
WP_005685233.1\|1858684_1859566_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_005685232.1\|1859701_1860406_+	response regulator transcription factor	NA	NA	NA	NA
WP_005685231.1\|1860392_1861304_+	sensor histidine kinase	NA	NA	NA	NA
WP_005685229.1\|1861357_1863184_+	ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	9.8e-20	31.1
WP_005716716.1\|1863170_1865084_+	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	2.7e-20	30.0
WP_005685226.1\|1865247_1865460_+	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	1.8e-05	40.9
WP_005685225.1\|1865510_1865957_+	hypothetical protein	NA	NA	NA	NA
WP_005685224.1\|1866015_1867998_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	3.5e-95	37.3

DBSCAN-SWA_9

1887859 : 1952708

Bacillus_virus(11.11%)

transposase,tRNA,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005685198.1\|1887859_1888876_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_077069941.1\|1891529_1892855_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005690949.1\|1892860_1893820_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.2e-26	32.0
WP_077069611.1\|1893819_1895352_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_077069612.1\|1895489_1896893_-\|transposase	ISLre2-like element ISLrh4 family transposase	NA	NA	NA	NA
WP_077069613.1\|1897045_1897246_+	Malolactic regulator	NA	NA	NA	NA
WP_077069614.1\|1897348_1899637_+	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_077069615.1\|1899766_1900594_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_077069616.1\|1900662_1901634_-	TDT family transporter	NA	NA	NA	NA
WP_005685184.1\|1902038_1902686_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_077069617.1\|1903017_1904619_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	6.2e-26	31.8
WP_077069618.1\|1904829_1905474_-	HD domain-containing protein	S4W232	Pandoravirus	5.2e-16	33.6
WP_005714141.1\|1905625_1906042_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_077069619.1\|1906210_1908739_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.3e-110	33.9
WP_049170740.1\|1908844_1909849_-	aldo/keto reductase	NA	NA	NA	NA
WP_005717288.1\|1909957_1910770_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_005685172.1\|1910960_1911305_-	hypothetical protein	NA	NA	NA	NA
WP_077069620.1\|1912000_1912264_+	DUF2187 domain-containing protein	NA	NA	NA	NA
WP_077069621.1\|1912553_1913243_+	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_005685162.1\|1913239_1913929_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_077069622.1\|1913972_1914785_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_077069623.1\|1914878_1915361_+	ribonuclease HI	A0A0H3UZB5	Geobacillus_virus	2.3e-21	37.7
WP_005685159.1\|1915366_1916269_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_077069624.1\|1916557_1917760_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	5.3e-22	26.3
WP_077069625.1\|1918133_1918439_-	hypothetical protein	NA	NA	NA	NA
WP_093997732.1\|1918610_1919397_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_115656753.1\|1919531_1919900_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	4.7e-14	42.6
WP_070651016.1\|1920212_1921169_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003569650.1\|1921352_1922210_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_077069626.1\|1922212_1923571_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_070651021.1\|1923624_1924857_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_070651023.1\|1924948_1926556_-	alpha-glucosidase	NA	NA	NA	NA
WP_070651025.1\|1926568_1927696_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.3e-19	31.3
WP_003569641.1\|1927688_1928369_-	beta-phosphoglucomutase	NA	NA	NA	NA
WP_070651026.1\|1928361_1930620_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_077069627.1\|1930738_1932478_-	alpha-glycosidase	NA	NA	NA	NA
WP_070543888.1\|1932480_1934148_-	alpha-glucosidase	NA	NA	NA	NA
WP_172493494.1\|1934515_1935302_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_077069628.1\|1935581_1935908_+	hypothetical protein	NA	NA	NA	NA
WP_077069629.1\|1936099_1937287_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.4e-106	58.6
WP_005690907.1\|1937535_1938237_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_005688159.1\|1938300_1938774_-	hypothetical protein	NA	NA	NA	NA
WP_077069630.1\|1939614_1941597_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_077069631.1\|1941600_1942530_-	1-phosphofructokinase	NA	NA	NA	NA
WP_049173471.1\|1942678_1943431_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_049173472.1\|1943493_1945026_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_005688149.1\|1945310_1945430_-	hypothetical protein	NA	NA	NA	NA
WP_077069632.1\|1945751_1946192_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014571670.1\|1946324_1947707_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_005690883.1\|1947935_1948664_-	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_005714162.1\|1948660_1948897_-	hypothetical protein	NA	NA	NA	NA
WP_077069633.1\|1948889_1950458_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_005690878.1\|1950530_1950851_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_077069634.1\|1950872_1951352_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_077069635.1\|1951557_1952352_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_005690873.1\|1952444_1952708_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_10

2155811 : 2168616

Lactobacillus_phage(30.0%)

tail,head,integrase,portal,capsid,terminase

attL 2155694:2155714|attR 2169687:2169707

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2155694:2155714	attL	NA	NA	NA	NA
WP_064520395.1\|2155811_2156969_-\|integrase	site-specific integrase	A0A2P0ZL94	Lactobacillus_phage	7.8e-47	33.3
WP_005690523.1\|2157086_2157698_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_029944073.1\|2157812_2158025_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014570223.1\|2158049_2158325_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_077069698.1\|2158392_2158614_+	hypothetical protein	NA	NA	NA	NA
WP_077069699.1\|2158724_2158916_+	hypothetical protein	NA	NA	NA	NA
WP_077069700.1\|2158964_2159237_+	hypothetical protein	NA	NA	NA	NA
WP_003586080.1\|2159233_2159422_+	hypothetical protein	NA	NA	NA	NA
WP_077069701.1\|2159405_2160233_+	bifunctional DNA primase/polymerase	A0A1B3B066	Gordonia_phage	7.3e-15	28.1
WP_077069702.1\|2160225_2161650_+	virulence protein	A0A1W6JQD6	Staphylococcus_phage	1.5e-63	37.6
WP_077069703.1\|2161929_2162352_+	hypothetical protein	A0A2H4JHE6	uncultured_Caudovirales_phage	6.0e-13	44.1
WP_191981971.1\|2162433_2162808_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	7.6e-12	41.7
WP_077069704.1\|2162932_2163403_+\|terminase	phage terminase small subunit P27 family	M1PKP2	Streptococcus_phage	2.1e-06	29.3
WP_077069705.1\|2163399_2165103_+\|terminase	terminase	E9LUI0	Lactobacillus_phage	1.7e-119	40.0
WP_003604811.1\|2165068_2165248_+	hypothetical protein	NA	NA	NA	NA
WP_077069706.1\|2165252_2166437_+\|portal	phage portal protein	A0A2H4J5A4	uncultured_Caudovirales_phage	1.7e-60	34.2
WP_077069707.1\|2166423_2167938_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	3.5e-39	25.9
WP_003577144.1\|2168000_2168291_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_077069708.1\|2168274_2168616_+\|head	phage head closure protein	I7AUE6	Enterococcus_phage	1.2e-08	38.4
2169687:2169707	attR	NA	NA	NA	NA

DBSCAN-SWA_11

2313807 : 2384402

Streptococcus_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014569018.1\|2313807_2315304_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_005687012.1\|2315363_2316245_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
WP_005687014.1\|2316344_2317112_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_005687015.1\|2317108_2318014_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_005687017.1\|2318214_2319366_-	N-acetyldiaminopimelate deacetylase	NA	NA	NA	NA
WP_005687018.1\|2319372_2320077_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA	NA	NA	NA
WP_005687019.1\|2320086_2321430_-	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_077069948.1\|2321867_2321972_-	Malolactic regulator	NA	NA	NA	NA
WP_049173210.1\|2322499_2323879_+	aspartate kinase	NA	NA	NA	NA
WP_077069753.1\|2323881_2324889_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_077069754.1\|2324896_2325955_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_077069755.1\|2326170_2326548_+	hypothetical protein	NA	NA	NA	NA
WP_077069756.1\|2326716_2327130_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_077069757.1\|2327122_2328001_+	DMT family transporter	NA	NA	NA	NA
WP_014569018.1\|2328213_2329710_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_077069758.1\|2330324_2330966_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005690235.1\|2331202_2332159_-	ABC transporter permease	NA	NA	NA	NA
WP_005690233.1\|2332161_2332902_-	ABC transporter permease	NA	NA	NA	NA
WP_005690231.1\|2332915_2333851_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.8e-25	33.5
WP_005687033.1\|2334175_2336182_+	DHH family phosphoesterase	NA	NA	NA	NA
WP_005687035.1\|2336198_2336654_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_005690229.1\|2337063_2338449_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	2.9e-125	52.6
WP_032965241.1\|2338511_2339675_+	hypothetical protein	NA	NA	NA	NA
WP_077069759.1\|2339797_2341789_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_005687044.1\|2341775_2342708_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_005687045.1\|2342748_2343795_-	DUF871 domain-containing protein	NA	NA	NA	NA
WP_014568958.1\|2344001_2344871_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_005687049.1\|2344977_2345583_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_005687051.1\|2345878_2346583_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.2e-35	35.7
WP_032960672.1\|2346593_2349899_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_005687056.1\|2350090_2351146_+	amidohydrolase family protein	NA	NA	NA	NA
WP_005687058.1\|2351360_2352653_+	adenylosuccinate synthase	L7Y4J5	Megavirus	9.6e-62	34.6
WP_014568961.1\|2352977_2354876_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.0e-87	34.2
WP_005687062.1\|2354971_2355316_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005687063.1\|2355668_2356883_+	MFS transporter	NA	NA	NA	NA
WP_005687066.1\|2357245_2359429_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	1.3e-255	59.7
WP_005687068.1\|2359611_2360307_+	hypothetical protein	NA	NA	NA	NA
WP_005688296.1\|2361721_2361988_+	hypothetical protein	NA	NA	NA	NA
WP_029943751.1\|2362005_2362614_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_076638900.1\|2362968_2363100_-	alpha-galactosidase	NA	NA	NA	NA
WP_077069760.1\|2363316_2364720_-\|transposase	ISLre2-like element ISLrh4 family transposase	NA	NA	NA	NA
WP_005688236.1\|2366428_2367409_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_005688238.1\|2367509_2368586_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_005688240.1\|2368842_2369094_+	hypothetical protein	NA	NA	NA	NA
WP_014568966.1\|2369223_2370306_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_005710972.1\|2370595_2370862_+	hypothetical protein	NA	NA	NA	NA
WP_005688248.1\|2371291_2371936_-	hypothetical protein	NA	NA	NA	NA
WP_048516665.1\|2371953_2373345_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_081395903.1\|2373952_2375449_+\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_005688325.1\|2376337_2378164_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.0e-60	29.1
WP_003597460.1\|2378524_2379208_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.6e-60	51.8
WP_005688376.1\|2379436_2380699_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_005688360.1\|2381563_2382718_-	cation:proton antiporter	NA	NA	NA	NA
WP_014569018.1\|2382905_2384402_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

3041736 : 3068082

Lactobacillus_phage(90.32%)

terminase,transposase,integrase,portal

attL 3034771:3034785|attR 3056718:3056732

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3034771:3034785	attL	NA	NA	NA	NA
WP_077069875.1\|3041736_3042864_-\|integrase	site-specific integrase	B4XYR4	Lactobacillus_phage	2.8e-211	98.4
WP_077069876.1\|3042971_3043235_-	hypothetical protein	B4XYT0	Lactobacillus_phage	5.5e-09	40.2
WP_010489722.1\|3043332_3043590_-	hypothetical protein	NA	NA	NA	NA
WP_070543786.1\|3043751_3045170_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010489720.1\|3045365_3046043_-	tcdA-E operon negative regulator	A0A2D1GPN7	Lactobacillus_phage	1.7e-86	97.3
WP_025014107.1\|3046104_3046752_-	LexA family transcriptional regulator	B4XYR6	Lactobacillus_phage	9.7e-39	43.1
WP_020752157.1\|3046900_3047167_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020752159.1\|3047543_3048284_+	phage regulatory protein/antirepressor Ant	B4XYR8	Lactobacillus_phage	7.8e-109	84.8
WP_015764320.1\|3048284_3048545_+	hypothetical protein	NA	NA	NA	NA
WP_015764321.1\|3048537_3048843_-	hypothetical protein	NA	NA	NA	NA
WP_005712707.1\|3048917_3049274_+	DUF771 domain-containing protein	B4XYS0	Lactobacillus_phage	1.1e-63	100.0
WP_005712709.1\|3049358_3049511_+	hypothetical protein	A0A0P0HRK6	Lactobacillus_phage	2.4e-20	100.0
WP_005712711.1\|3049515_3049719_+	hypothetical protein	Q6J1W0	Lactobacillus_phage	2.7e-27	89.6
WP_077069878.1\|3049737_3050223_+	siphovirus Gp157 family protein	B4XYS3	Lactobacillus_phage	7.7e-81	97.5
WP_049152790.1\|3050223_3050931_+	AAA family ATPase	Q6J1V8	Lactobacillus_phage	8.2e-132	98.7
WP_021354142.1\|3050934_3051492_+	DUF669 domain-containing protein	A8YQL6	Lactobacillus_phage	1.5e-104	99.5
WP_077069879.1\|3051508_3052336_+	helix-turn-helix domain-containing protein	U5U793	Lactobacillus_phage	1.0e-112	75.1
WP_077069880.1\|3052332_3053595_+	DNA helicase	A8YQM1	Lactobacillus_phage	8.6e-233	96.9
WP_077069881.1\|3053596_3053941_+	hypothetical protein	A8YQM2	Lactobacillus_phage	9.0e-60	96.5
WP_077069882.1\|3053982_3054384_+	RusA family crossover junction endodeoxyribonuclease	A8YQM5	Lactobacillus_phage	1.2e-50	71.5
WP_077069883.1\|3054399_3054882_+	hypothetical protein	A8ATW6	Listeria_phage	3.2e-26	43.9
WP_077069884.1\|3054896_3055082_+	hypothetical protein	Q6J1V0	Lactobacillus_phage	1.2e-26	93.4
WP_077069885.1\|3055078_3055363_+	hypothetical protein	NA	NA	NA	NA
WP_077069886.1\|3055359_3055923_+	DUF1642 domain-containing protein	A0A2D1GPC7	Lactobacillus_phage	8.8e-36	50.0
WP_077069887.1\|3055912_3056092_+	hypothetical protein	NA	NA	NA	NA
WP_077069888.1\|3056078_3056297_+	hypothetical protein	NA	NA	NA	NA
WP_077069889.1\|3056286_3056595_+	hypothetical protein	C1KFE8	Lactobacillus_virus	1.0e-38	79.2
WP_077069891.1\|3057007_3057364_+	hypothetical protein	C1KFE7	Lactobacillus_virus	1.4e-26	59.5
3056718:3056732	attR	NA	NA	NA	NA
WP_077069892.1\|3057360_3057780_+	hypothetical protein	A0A2D1GPA7	Lactobacillus_phage	7.4e-40	60.0
WP_077069894.1\|3058174_3058393_+	helix-turn-helix transcriptional regulator	A0A0P0IK26	Lactobacillus_phage	1.7e-24	75.0
WP_005686946.1\|3058745_3059189_+	hypothetical protein	A0A0P0IZI6	Lactobacillus_phage	2.3e-76	96.6
WP_005686948.1\|3059476_3060337_+	hypothetical protein	NA	NA	NA	NA
WP_003582255.1\|3060587_3060806_-	CsbD family protein	NA	NA	NA	NA
WP_077069896.1\|3061215_3062364_+	hypothetical protein	B4XYU0	Lactobacillus_phage	3.5e-217	95.5
WP_077069897.1\|3062376_3062907_+	HNH endonuclease	Q8LTA0	Lactobacillus_phage	3.1e-67	67.8
WP_077069898.1\|3062910_3063234_+	ribonucleoside-diphosphate reductase	U5U741	Lactobacillus_phage	4.1e-46	84.8
WP_155772846.1\|3063235_3063400_+	hypothetical protein	NA	NA	NA	NA
WP_077069899.1\|3063436_3064231_+	HNH endonuclease	B4XYU4	Lactobacillus_phage	7.0e-148	97.3
WP_005686963.1\|3064431_3064887_+\|terminase	P27 family phage terminase small subunit	B4XYP1	Lactobacillus_phage	6.7e-79	98.0
WP_077069900.1\|3064908_3066621_+\|terminase	terminase large subunit	B4XYP2	Lactobacillus_phage	0.0e+00	97.9
WP_003661399.1\|3066632_3066824_+	hypothetical protein	A0A2D1GPE7	Lactobacillus_phage	3.0e-28	100.0
WP_077069901.1\|3066828_3068082_+\|portal	phage portal protein	B4XYP4	Lactobacillus_phage	2.3e-230	97.4

Anti-CRISPR protein detection

Acr_ID: NZ_CP014201.1|WP_032962113.1|1790909_1791140_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP014201.1|WP_012537722.1|1791159_1791663_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP014201.1|WP_032962113.1|1790909_1791140_+|hypothetical-protein

1790909_1791140_+

76 aa aa

HTH_Hin_like

Identity	Hit_domain_coverage
0.4166666666666667	0.7142857142857143

1775149-1867998

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP014201_7	TypeII	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	1800478-1800449	0

1. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP014201 position: 1800478-1800449, mismatch: 0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

NZ_CP014201.1|WP_012537722.1|1791159_1791663_+|hypothetical-protein

1791159_1791663_+

167 aa aa

HTH_Hin_like

Identity	Hit_domain_coverage
0.4166666666666667	0.7142857142857143

1775149-1867998

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP014201_7	TypeII	7.7\|1392480\|30\|NZ_CP014201\|CRISPRCasFinder,CRT	1392480-1392509	30	1800478-1800449	0

1. spacer 7.7|1392480|30|NZ_CP014201|CRISPRCasFinder,CRT matches to NZ_CP014201 position: 1800478-1800449, mismatch: 0

ttggagcgaaagcttctttgccatcatgaa	CRISPR spacer
ttggagcgaaagcttctttgccatcatgaa	Protospacer
******************************

2. NZ_CP014202

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP014201

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

2. NZ_CP014202

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection