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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013864 Bordetella pertussis strain J300 chromosome, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 29 0

Results visualization

1. NZ_CP013864
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013864_1 250589-250673 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013864_2 432032-432125 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013864_3 995300-995394 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013864_4 1818755-1818882 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013864_5 3430379-3430488 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 78584 49 Synechococcus_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_2 107426 : 175250 56 Bacillus_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_3 178632 : 236269 48 Klosneuvirus(14.29%) protease,transposase,tRNA NA
DBSCAN-SWA_4 250683 : 303019 47 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_5 390855 : 448364 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_6 589369 : 650560 55 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_7 655884 : 702074 49 uncultured_Caudovirales_phage(18.18%) terminase,tail,transposase,tRNA NA
DBSCAN-SWA_8 708240 : 762170 46 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_9 884759 : 952735 56 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 996264 : 1068781 60 Enterococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_11 1072534 : 1134610 51 Catovirus(20.0%) holin,transposase,tRNA NA
DBSCAN-SWA_12 1152180 : 1218699 53 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_13 1269627 : 1326838 49 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1417071 : 1469224 44 Salmonella_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_15 1513149 : 1581234 57 Streptococcus_virus(11.11%) transposase,tRNA NA
DBSCAN-SWA_16 1617183 : 1672774 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_17 1830541 : 1961602 119 Klosneuvirus(18.75%) protease,transposase,tRNA NA
DBSCAN-SWA_18 1973098 : 2037467 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_19 2168996 : 2226275 49 Synechococcus_phage(14.29%) transposase,tRNA NA
DBSCAN-SWA_20 2474956 : 2533200 53 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_21 2575478 : 2641978 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_22 2670093 : 2707505 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_23 2806632 : 2861149 48 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_24 2869174 : 2925960 40 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_25 2956346 : 3000037 39 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_26 3399843 : 3444915 37 Staphylococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_27 3462659 : 3515064 47 Acinetobacter_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_28 3532182 : 3585983 46 Catovirus(11.11%) transposase,tRNA NA
DBSCAN-SWA_29 4004398 : 4069310 59 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage