CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019414	Salmonella enterica subsp. enterica serovar Manchester str. ST278 chromosome, complete genome	2 crisprs	DinG,cas3,DEDDh,csa3,WYL,PD-DExK,RT	0	8	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019414_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019414_1

2830682-2831016

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACACT	CRISPRCasFinder
CGGTTTATCCCCGCTGNCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

5 spacers

The CRISPR arrays of NZ_CP019414_1

>merge|NZ_CP019414|1|2830682-2831016|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACACGCTTCGAGTGATGGAAAGACAGGAGTTGTCTTCGGTTTATCCCCGCTGGCGCGGGGTACACCCGTTCCGCAGGCGGTAACGCCTGAAACTTCGCGGTTTATCCCCGCTGGCGCGGGGAACACAGCATTGGCGTTTTCCGTTGCGTCAATGGCTTCGGTTTATCCCCGCTGACGCGGGGAACACACCCCTTTAATCTGTTCATTGCTCCAGCCACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTCTTGTCCCGCAGAATTCATCTGGCGTCTCCGGTTTATCCCCGCTGGCGCGGGGAACACT

>NZ_CP019414|1|1|2830682-2831016|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACACG	CTTCGAGTGATGGAAAGACAGGAGTTGTCTT
CGGTTTATCCCCGCTGGCGCGGGGTACACC	CGTTCCGCAGGCGGTAACGCCTGAAACTTCG
CGGTTTATCCCCGCTGGCGCGGGGAACACA	GCATTGGCGTTTTCCGTTGCGTCAATGGCTT
CGGTTTATCCCCGCTGACGCGGGGAACACA	CCCCTTTAATCTGTTCATTGCTCCAGCCACG
CGGTTTATCCCCGCTGGCGCGGGGAACACT	CTCTTGTCCCGCAGAATTCATCTGGCGTCTC
CGGTTTATCCCCGCTGGCGCGGGGAACACT

>NZ_CP019414|1|1|2830682-2831015|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAC	GCTTCGAGTGATGGAAAGACAGGAGTTGTCTT
CGGTTTATCCCCGCTGGCGCGGGGTACAC	CCGTTCCGCAGGCGGTAACGCCTGAAACTTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCATTGGCGTTTTCCGTTGCGTCAATGGCTT
CGGTTTATCCCCGCTGACGCGGGGAACAC	ACCCCTTTAATCTGTTCATTGCTCCAGCCACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCTTGTCCCGCAGAATTCATCTGGCGTCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019414|1|1|2830684-2831015|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACACGC	TTCGAGTGATGGAAAGACAGGAGTTGTCTTCG
GTTTATCCCCGCTGGCGCGGGGTACACCC	GTTCCGCAGGCGGTAACGCCTGAAACTTCGCG
GTTTATCCCCGCTGGCGCGGGGAACACAG	CATTGGCGTTTTCCGTTGCGTCAATGGCTTCG
GTTTATCCCCGCTGACGCGGGGAACACAC	CCCTTTAATCTGTTCATTGCTCCAGCCACGCG
GTTTATCCCCGCTGGCGCGGGGAACACTC	TCTTGTCCCGCAGAATTCATCTGGCGTCTCCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019414.1\|WP_000210861.1\|2842799_2844437_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019414.1\|WP_023233919.1\|2844664_2845465_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019414.1\|WP_000741649.1\|2824815_2825526_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019414.1\|WP_001537530.1\|2826046_2826370_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019414.1\|WP_000490473.1\|2829620_2830667_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019414.1\|WP_001173659.1\|2826420_2827026_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019414.1\|WP_023233920.1\|2839208_2840006_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019414.1\|WP_076737366.1\|2833973_2834708_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019414.1\|WP_001219244.1\|2824336_2824816_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019414.1\|WP_076737369.1\|2836521_2838321_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019414.1\|WP_023227571.1\|2827012_2828452_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019414.1\|WP_000108313.1\|2838756_2839119_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019414.1\|WP_076737368.1\|2834809_2836522_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019414.1\|WP_000372384.1\|2828461_2829370_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019414.1\|WP_000036734.1\|2841418_2842717_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019414.1\|WP_000517480.1\|2825544_2825856_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019414.1\|WP_001221537.1\|2822548_2823310_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019414.1\|WP_000134246.1\|2823290_2824340_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019414.1\|WP_001199961.1\|2840611_2841283_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019414.1\|WP_076737365.1\|2832932_2833886_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NZ_CP019414.1\|WP_000210861.1\|2842799_2844437_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019414.1\|WP_023233919.1\|2844664_2845465_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.92241e-158
NZ_CP019414.1\|WP_000741649.1\|2824815_2825526_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_CP019414.1\|WP_001537530.1\|2826046_2826370_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP019414.1\|WP_000490473.1\|2829620_2830667_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019414.1\|WP_001173659.1\|2826420_2827026_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.2499e-145
NZ_CP019414.1\|WP_023233920.1\|2839208_2840006_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.49245e-101
NZ_CP019414.1\|WP_076737366.1\|2833973_2834708_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.10967e-138
NZ_CP019414.1\|WP_001219244.1\|2824336_2824816_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP019414.1\|WP_076737369.1\|2836521_2838321_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019414.1\|WP_023227571.1\|2827012_2828452_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019414.1\|WP_000108313.1\|2838756_2839119_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP019414.1\|WP_076737368.1\|2834809_2836522_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019414.1\|WP_000372384.1\|2828461_2829370_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019414.1\|WP_000036734.1\|2841418_2842717_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019414.1\|WP_000517480.1\|2825544_2825856_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019414.1\|WP_001221537.1\|2822548_2823310_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NZ_CP019414.1\|WP_000134246.1\|2823290_2824340_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019414.1\|WP_001199961.1\|2840611_2841283_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP019414.1\|WP_076737365.1\|2832932_2833886_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NZ_CP019414.1|WP_000490473.1|2829620_2830667_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019414.1|WP_000372384.1|2828461_2829370_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019414.1|WP_023227571.1|2827012_2828452_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019414.1|WP_001173659.1|2826420_2827026_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019414.1|WP_001537530.1|2826046_2826370_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019414.1|WP_000517480.1|2825544_2825856_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019414.1|WP_000741649.1|2824815_2825526_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019414.1|WP_001219244.1|2824336_2824816_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019414.1|WP_000134246.1|2823290_2824340_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019414.1|WP_001221537.1|2822548_2823310_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP019414.1|WP_076737365.1|2832932_2833886_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDQALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQREVAFSMMHPCISYLLHSYSPFTEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP019414.1|WP_076737366.1|2833973_2834708_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAEINAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAKEETRFFGLKRECGLHEG
>NZ_CP019414.1|WP_076737368.1|2834809_2836522_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSALRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIICPVLDPARDFWE
>NZ_CP019414.1|WP_076737369.1|2836521_2838321_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKLPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVGVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIIENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP019414.1|WP_000108313.1|2838756_2839119_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP019414.1|WP_023233920.1|2839208_2840006_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGSDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019414.1|WP_001199961.1|2840611_2841283_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019414.1|WP_000036734.1|2841418_2842717_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019414.1|WP_000210861.1|2842799_2844437_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP019414.1|WP_023233919.1|2844664_2845465_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLEPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL

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Crispr_ID: NZ_CP019414_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019414_2

2840104-2840316

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
TATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACACC	PILER-CR

3 spacers

cas3

The CRISPR arrays of NZ_CP019414_2

>merge|NZ_CP019414|2|2840104-2840316|CRT,CRISPRCasFinder,PILER-CR
ACGGCTATCCCCGCTGGCGCGGGGAACACTAACTCATCACATCCGCGTCAGACCTCGTGACCGGTTTATCCCCGCTGGCGCGGGGAACACCCGCGTGGTGCAGGGCAAGGATCGGGTTGAGGCGGTTTATCCCCGCTGGCGCGGGGAACACCTGCGCCTCTTTTTGAGCCTCCGCCCCCTCATCGGTTTATCCCCGCTGGCGCGGGGAACACA

>NZ_CP019414|2|2|2840104-2840315|CRT
ACGGCTATCCCCGCTGGCGCGGGGAACAC	TAACTCATCACATCCGCGTCAGACCTCGTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGCGTGGTGCAGGGCAAGGATCGGGTTGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGCGCCTCTTTTTGAGCCTCCGCCCCCTCAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019414|2|2|2840109-2840315|CRISPRCasFinder
TATCCCCGCTGGCGCGGGGAACAC	TAACTCATCACATCCGCGTCAGACCTCGTGACCGGTT
TATCCCCGCTGGCGCGGGGAACAC	CCGCGTGGTGCAGGGCAAGGATCGGGTTGAGGCGGTT
TATCCCCGCTGGCGCGGGGAACAC	CTGCGCCTCTTTTTGAGCCTCCGCCCCCTCATCGGTT
TATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019414|2|2|2840165-2840316|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACACC	CGCGTGGTGCAGGGCAAGGATCGGGTTGAGG
CGGTTTATCCCCGCTGGCGCGGGGAACACC	TGCGCCTCTTTTTGAGCCTCCGCCCCCTCAT
CGGTTTATCCCCGCTGGCGCGGGGAACACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019414.1\|WP_000210861.1\|2842799_2844437_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019414.1\|WP_188317967.1\|2831016_2832549_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP019414.1\|WP_001199961.1\|2840611_2841283_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019414.1\|WP_000186396.1\|2850577_2853334_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP019414.1\|WP_000490473.1\|2829620_2830667_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019414.1\|WP_000226841.1\|2846938_2849173_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP019414.1\|WP_023233920.1\|2839208_2840006_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019414.1\|WP_076737366.1\|2833973_2834708_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019414.1\|WP_010989226.1\|2846497_2846854_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP019414.1\|WP_000107113.1\|2854597_2855938_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP019414.1\|WP_076737369.1\|2836521_2838321_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019414.1\|WP_023227571.1\|2827012_2828452_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019414.1\|WP_000108313.1\|2838756_2839119_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019414.1\|WP_076737368.1\|2834809_2836522_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019414.1\|WP_000372384.1\|2828461_2829370_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019414.1\|WP_000036734.1\|2841418_2842717_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019414.1\|WP_076737371.1\|2853377_2854520_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP019414.1\|WP_023233919.1\|2844664_2845465_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019414.1\|WP_076737370.1\|2849224_2850520_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP019414.1\|WP_076737365.1\|2832932_2833886_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NZ_CP019414.1\|WP_000210861.1\|2842799_2844437_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019414.1\|WP_188317967.1\|2831016_2832549_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	9.4622e-92
NZ_CP019414.1\|WP_001199961.1\|2840611_2841283_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP019414.1\|WP_000186396.1\|2850577_2853334_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP019414.1\|WP_000490473.1\|2829620_2830667_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019414.1\|WP_000226841.1\|2846938_2849173_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP019414.1\|WP_023233920.1\|2839208_2840006_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.49245e-101
NZ_CP019414.1\|WP_076737366.1\|2833973_2834708_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.10967e-138
NZ_CP019414.1\|WP_010989226.1\|2846497_2846854_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	1.00464e-19
NZ_CP019414.1\|WP_000107113.1\|2854597_2855938_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP019414.1\|WP_076737369.1\|2836521_2838321_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019414.1\|WP_023227571.1\|2827012_2828452_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019414.1\|WP_000108313.1\|2838756_2839119_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP019414.1\|WP_076737368.1\|2834809_2836522_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019414.1\|WP_000372384.1\|2828461_2829370_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019414.1\|WP_000036734.1\|2841418_2842717_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019414.1\|WP_076737371.1\|2853377_2854520_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP019414.1\|WP_023233919.1\|2844664_2845465_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.92241e-158
NZ_CP019414.1\|WP_076737370.1\|2849224_2850520_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP019414.1\|WP_076737365.1\|2832932_2833886_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NZ_CP019414.1|WP_023233920.1|2839208_2840006_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGSDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSREVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019414.1|WP_000108313.1|2838756_2839119_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP019414.1|WP_076737369.1|2836521_2838321_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKLPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVGVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIIENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP019414.1|WP_076737368.1|2834809_2836522_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSALRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIICPVLDPARDFWE
>NZ_CP019414.1|WP_076737366.1|2833973_2834708_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVDRVLALAEINAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAKEETRFFGLKRECGLHEG
>NZ_CP019414.1|WP_076737365.1|2832932_2833886_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDQALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQREVAFSMMHPCISYLLHSYSPFTEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP019414.1|WP_188317967.1|2831016_2832549_+|CRISPR-associated-helicase-Cas3'
MAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKVLLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYTDHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>NZ_CP019414.1|WP_000490473.1|2829620_2830667_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019414.1|WP_000372384.1|2828461_2829370_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019414.1|WP_023227571.1|2827012_2828452_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019414.1|WP_001199961.1|2840611_2841283_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019414.1|WP_000036734.1|2841418_2842717_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019414.1|WP_000210861.1|2842799_2844437_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP019414.1|WP_023233919.1|2844664_2845465_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLEPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019414.1|WP_010989226.1|2846497_2846854_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFQVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP019414.1|WP_000226841.1|2846938_2849173_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP019414.1|WP_076737370.1|2849224_2850520_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVILTEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVGIDLQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVDQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP019414.1|WP_000186396.1|2850577_2853334_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP019414.1|WP_076737371.1|2853377_2854520_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATVGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDVGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEVCLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP019414.1|WP_000107113.1|2854597_2855938_-|glucarate-dehydratase
MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019414_1	1.2\|2830773\|31\|NZ_CP019414\|CRISPRCasFinder	2830773-2830803	31	NC_001901	Bacteriophage N15, complete genome	15641-15671	6	0.806
NZ_CP019414_1	1.2\|2830773\|31\|NZ_CP019414\|CRISPRCasFinder	2830773-2830803	31	NZ_CP045204	Citrobacter sp. NMI7904_11 plasmid pCTEL-1, complete sequence	4470-4500	7	0.774
NZ_CP019414_1	1.7\|2830772\|32\|NZ_CP019414\|CRT	2830772-2830803	32	NZ_CP045204	Citrobacter sp. NMI7904_11 plasmid pCTEL-1, complete sequence	4469-4500	7	0.781
NZ_CP019414_1	1.7\|2830772\|32\|NZ_CP019414\|CRT	2830772-2830803	32	NC_001901	Bacteriophage N15, complete genome	15641-15672	7	0.781
NZ_CP019414_1	1.12\|2830774\|32\|NZ_CP019414\|PILER-CR	2830774-2830805	32	NZ_CP045204	Citrobacter sp. NMI7904_11 plasmid pCTEL-1, complete sequence	4469-4500	7	0.781
NZ_CP019414_1	1.12\|2830774\|32\|NZ_CP019414\|PILER-CR	2830774-2830805	32	NC_001901	Bacteriophage N15, complete genome	15641-15672	7	0.781
NZ_CP019414_2	2.7\|2840195\|31\|NZ_CP019414\|PILER-CR	2840195-2840225	31	MH029534	Myoviridae environmental samples clone NHS-Seq2, complete sequence	20720-20750	7	0.774
NZ_CP019414_2	2.1\|2840133\|32\|NZ_CP019414\|CRT	2840133-2840164	32	JX434031	Pseudomonas phage JBD24, complete genome	2242-2273	8	0.75
NZ_CP019414_2	2.7\|2840195\|31\|NZ_CP019414\|PILER-CR	2840195-2840225	31	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	209460-209490	8	0.742
NZ_CP019414_2	2.2\|2840194\|32\|NZ_CP019414\|CRT	2840194-2840225	32	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	301744-301775	9	0.719
NZ_CP019414_2	2.2\|2840194\|32\|NZ_CP019414\|CRT	2840194-2840225	32	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	209459-209490	9	0.719
NZ_CP019414_2	2.7\|2840195\|31\|NZ_CP019414\|PILER-CR	2840195-2840225	31	NZ_CP028970	Aminobacter sp. MSH1 plasmid pUSP2, complete sequence	301744-301774	9	0.71
NZ_CP019414_2	2.8\|2840256\|31\|NZ_CP019414\|PILER-CR	2840256-2840286	31	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	603848-603878	9	0.71
NZ_CP019414_2	2.3\|2840255\|32\|NZ_CP019414\|CRT	2840255-2840286	32	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	603848-603879	10	0.688

1. spacer 1.2|2830773|31|NZ_CP019414|CRISPRCasFinder matches to NC_001901 (Bacteriophage N15, complete genome) position: , mismatch: 6, identity: 0.806

---cgttccgcaggcggtaacgcctgaaacttcg	CRISPR spacer
gtgcgtc---caggcggtagcgcttgaaacttcg	Protospacer
   ***.   *********.***.**********

2. spacer 1.2|2830773|31|NZ_CP019414|CRISPRCasFinder matches to NZ_CP045204 (Citrobacter sp. NMI7904_11 plasmid pCTEL-1, complete sequence) position: , mismatch: 7, identity: 0.774

cgttccgcaggcggtaacgcctgaaacttcg	CRISPR spacer
cgttccgccggcgataacgcctgctacggtg	Protospacer
******** ****.*********  **  .*

3. spacer 1.7|2830772|32|NZ_CP019414|CRT matches to NZ_CP045204 (Citrobacter sp. NMI7904_11 plasmid pCTEL-1, complete sequence) position: , mismatch: 7, identity: 0.781

ccgttccgcaggcggtaacgcctgaaacttcg	CRISPR spacer
ccgttccgccggcgataacgcctgctacggtg	Protospacer
********* ****.*********  **  .*

4. spacer 1.7|2830772|32|NZ_CP019414|CRT matches to NC_001901 (Bacteriophage N15, complete genome) position: , mismatch: 7, identity: 0.781

---ccgttccgcaggcggtaacgcctgaaacttcg	CRISPR spacer
tgtgcgtc---caggcggtagcgcttgaaacttcg	Protospacer
    ***.   *********.***.**********

5. spacer 1.12|2830774|32|NZ_CP019414|PILER-CR matches to NZ_CP045204 (Citrobacter sp. NMI7904_11 plasmid pCTEL-1, complete sequence) position: , mismatch: 7, identity: 0.781

ccgttccgcaggcggtaacgcctgaaacttcg	CRISPR spacer
ccgttccgccggcgataacgcctgctacggtg	Protospacer
********* ****.*********  **  .*

6. spacer 1.12|2830774|32|NZ_CP019414|PILER-CR matches to NC_001901 (Bacteriophage N15, complete genome) position: , mismatch: 7, identity: 0.781

---ccgttccgcaggcggtaacgcctgaaacttcg	CRISPR spacer
tgtgcgtc---caggcggtagcgcttgaaacttcg	Protospacer
    ***.   *********.***.**********

7. spacer 2.7|2840195|31|NZ_CP019414|PILER-CR matches to MH029534 (Myoviridae environmental samples clone NHS-Seq2, complete sequence) position: , mismatch: 7, identity: 0.774

cgcgtggtgcagggcaaggatcgggttgagg	CRISPR spacer
gccaaggagcagggcaaggatcgggttacgg	Protospacer
  *. ** *******************. **

8. spacer 2.1|2840133|32|NZ_CP019414|CRT matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

taact--catcacatccgcgtcagacctcgtgac	CRISPR spacer
--actgccatcacattcgcggcagacctcgccga	Protospacer
  ***  ********.**** *********. .

9. spacer 2.7|2840195|31|NZ_CP019414|PILER-CR matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.742

cgcgtggtgcagggcaaggatcgggttgagg	CRISPR spacer
ggcgtgatgcagggcaaggatgggctggtca	Protospacer
 *****.************** ** * *  .

10. spacer 2.2|2840194|32|NZ_CP019414|CRT matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcgtggtgcagggcaaggatcgggttgagg	CRISPR spacer
ccgcgtcgagcagggcaaggatcgccacgcca	Protospacer
****** * ***************   .*  .

11. spacer 2.2|2840194|32|NZ_CP019414|CRT matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcgtggtgcagggcaaggatcgggttgagg	CRISPR spacer
tggcgtgatgcagggcaaggatgggctggtca	Protospacer
. *****.************** ** * *  .

12. spacer 2.7|2840195|31|NZ_CP019414|PILER-CR matches to NZ_CP028970 (Aminobacter sp. MSH1 plasmid pUSP2, complete sequence) position: , mismatch: 9, identity: 0.71

cgcgtggtgcagggcaaggatcgggttgagg	CRISPR spacer
cgcgtcgagcagggcaaggatcgccacgcca	Protospacer
***** * ***************   .*  .

13. spacer 2.8|2840256|31|NZ_CP019414|PILER-CR matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

tgcgcctctttttgagcctccgccccctcat	CRISPR spacer
tgcgcctccttttgggcctccgcctgtggcg	Protospacer
********.*****.*********. .

14. spacer 2.3|2840255|32|NZ_CP019414|CRT matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ctgcgcctctttttgagcctccgccccctcat	CRISPR spacer
ttgcgcctccttttgggcctccgcctgtggcg	Protospacer
.********.*****.*********. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

912573 : 921262

Dickeya_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076736873.1\|912573_913692_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8
WP_000125880.1\|913688_915635_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|915764_915986_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|916309_916630_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_076736875.1\|916660_918937_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.8e-165	42.3
WP_076737698.1\|919236_920217_-	hypothetical protein	NA	NA	NA	NA
WP_076736877.1\|920386_921262_-	toll/interleukin-1 receptor domain-containing protein	S6BFN8	Thermus_phage	4.3e-05	35.2

DBSCAN-SWA_2

1141756 : 1217791

Salmonella_phage(50.79%)

head,capsid,plate,tRNA,protease,holin,transposase,tail,integrase,portal,terminase

attL 1151149:1151164|attR 1186292:1186307

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000502119.1\|1141756_1142215_+\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_076736959.1\|1142343_1143309_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_001114323.1\|1143456_1146903_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_188317963.1\|1147240_1148440_+	lipoprotein-releasing ABC transporter permease subunit LolC	NA	NA	NA	NA
WP_001033714.1\|1148432_1149134_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	2.4e-35	40.7
WP_000168091.1\|1149133_1150378_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
WP_000291322.1\|1150406_1151318_+	N-acetylglucosamine kinase	NA	NA	NA	NA
1151149:1151164	attL	NA	NA	NA	NA
WP_001191854.1\|1151336_1152158_+	NAD-dependent protein deacylase	A0A2I7S9Y2	Vibrio_phage	1.0e-21	33.5
WP_000759329.1\|1152239_1153286_-	spermidine/putrescine ABC transporter substrate-binding protein PotD	NA	NA	NA	NA
WP_000580299.1\|1153310_1154090_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA
WP_076736961.1\|1154405_1155416_-	SPI-2 type III secretion system effector SifA	NA	NA	NA	NA
WP_076736962.1\|1155744_1156608_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	1.5e-10	25.4
WP_000531607.1\|1156591_1157728_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	G3M9Y6	Bacillus_virus	2.1e-28	34.0
WP_076736963.1\|1157978_1159208_+	peptidase T	NA	NA	NA	NA
WP_076736964.1\|1159211_1160558_+	hypothetical protein	NA	NA	NA	NA
WP_076736965.1\|1160597_1161719_-	cupin domain-containing protein	NA	NA	NA	NA
WP_001031687.1\|1161799_1163263_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001537766.1\|1163262_1163934_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423763.1\|1164060_1165431_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	8.5e-109	45.3
WP_001519653.1\|1165434_1166076_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_000004540.1\|1166162_1167269_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476064.1\|1167322_1167784_-	NUDIX hydrolase	NA	NA	NA	NA
WP_000825956.1\|1167795_1168125_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_023233928.1\|1168121_1168787_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444507.1\|1168958_1170209_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
WP_000741325.1\|1170322_1171465_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21929	Phage_21	8.2e-174	80.3
WP_000089141.1\|1171454_1171691_-	excisionase	NA	NA	NA	NA
WP_000008351.1\|1171834_1172374_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_023227246.1\|1172510_1173338_-	DUF2303 family protein	Q8HAA2	Salmonella_phage	1.9e-151	98.5
WP_000997190.1\|1173395_1173767_-	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
WP_076736966.1\|1174338_1174590_+	bssS family protein	NA	NA	NA	NA
WP_024132396.1\|1174665_1174851_-	hypothetical protein	A0A1C9II97	Salmonella_phage	1.2e-13	73.3
WP_001020636.1\|1175056_1175752_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
WP_001191666.1\|1175849_1176074_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_000509731.1\|1176102_1176657_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_076736968.1\|1176653_1177796_+	Rha family phage regulatory protein	Q8HA97	Salmonella_phage	4.5e-180	86.0
WP_000620702.1\|1177792_1178017_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_076736969.1\|1178013_1178973_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.0e-117	80.6
WP_001669427.1\|1178974_1179457_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	6.0e-86	98.1
WP_076736970.1\|1179456_1180110_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.3e-115	88.9
WP_000779150.1\|1180106_1180496_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.4e-61	86.0
WP_076736971.1\|1180512_1181373_+	KilA-N domain-containing protein	A0A192Y6F8	Salmonella_phage	1.0e-160	98.6
WP_076737702.1\|1181380_1182370_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	1.4e-190	97.3
WP_076736972.1\|1182384_1182657_+	hypothetical protein	A0A1B5FPA6	Escherichia_phage	9.4e-28	77.6
WP_001534776.1\|1182653_1183490_+	antitermination protein	A0A1B5FPA5	Escherichia_phage	3.5e-121	77.4
WP_023227239.1\|1183793_1184489_+	hypothetical protein	NA	NA	NA	NA
WP_023221874.1\|1184793_1184982_+	hypothetical protein	NA	NA	NA	NA
WP_001294873.1\|1185071_1185461_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	4.8e-41	72.5
WP_000226307.1\|1185447_1185729_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001075992.1\|1185728_1186343_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	6.7e-106	92.2
1186292:1186307	attR	NA	NA	NA	NA
WP_000636436.1\|1186339_1186882_+	DUF2514 family protein	NA	NA	NA	NA
WP_023136440.1\|1186984_1187488_+	hypothetical protein	NA	NA	NA	NA
WP_076736973.1\|1187555_1187900_+	HNH endonuclease	K7P7P6	Enterobacteria_phage	2.6e-46	73.0
WP_000919034.1\|1188032_1188497_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.3e-48	62.1
WP_078052818.1\|1188450_1190193_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	9.1e-140	44.5
WP_000002706.1\|1190192_1191497_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	5.1e-220	86.9
WP_076736974.1\|1191510_1192359_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	4.9e-131	88.2
WP_023171046.1\|1192368_1193586_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	4.6e-199	88.9
WP_023233172.1\|1193629_1193818_+	hypothetical protein	K7PHI6	Enterobacteria_phage	1.7e-12	57.6
WP_000886224.1\|1193817_1194141_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	2.2e-31	57.4
WP_023171044.1\|1194152_1194566_+\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	6.0e-50	74.8
WP_023233173.1\|1194537_1195050_+	hypothetical protein	Q8HAC8	Salmonella_phage	6.2e-81	87.1
WP_076736975.1\|1195046_1195607_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	3.0e-97	90.3
WP_023233175.1\|1195610_1195775_+	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	3.8e-24	98.1
WP_001007996.1\|1195764_1197261_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A192Y7L1	Salmonella_phage	2.1e-278	100.0
WP_000515952.1\|1197260_1197617_+\|tail	phage tail tube protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_000588852.1\|1197613_1197940_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_076736976.1\|1198024_1199953_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.5
WP_076736977.1\|1199986_1201327_+	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	9.1e-249	98.9
WP_076736978.1\|1201323_1202382_+\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	3.9e-202	99.7
WP_076736979.1\|1202381_1202915_+\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	9.3e-96	98.9
WP_060633334.1\|1202919_1203333_+	phage GP46 family protein	A0A192Y6D0	Salmonella_phage	2.0e-74	99.3
WP_076736980.1\|1203325_1204405_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	4.2e-204	99.4
WP_057515115.1\|1204407_1204995_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	5.4e-113	98.5
WP_076736981.1\|1204981_1206157_+\|tail	tail fiber protein	Q8HAB4	Salmonella_phage	1.1e-48	93.1
WP_076736982.1\|1206153_1206978_+	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	6.8e-154	95.6
WP_000143155.1\|1206967_1207543_+\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	1.0e-92	86.9
WP_001604825.1\|1208196_1208754_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	2.5e-19	32.3
WP_076736983.1\|1209044_1209245_-	phage virulence factor PagK family protein	NA	NA	NA	NA
WP_071587004.1\|1209424_1209586_+	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	1.5e-09	97.0
WP_000334549.1\|1209706_1210378_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-80	60.4
WP_001521673.1\|1210631_1210844_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-20	92.6
WP_061383022.1\|1211301_1212426_+	type III secretion system effector SopF	NA	NA	NA	NA
WP_023218772.1\|1213377_1213791_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.9e-19	37.7
WP_023218771.1\|1213807_1214536_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.4e-62	53.3
WP_000158843.1\|1214727_1215270_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001277616.1\|1215418_1215796_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_023226907.1\|1215868_1216678_-	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	9.2e-63	50.0
WP_023218769.1\|1217175_1217340_+	hypothetical protein	NA	NA	NA	NA
WP_000497451.1\|1217551_1217791_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

DBSCAN-SWA_3

1960313 : 1967565

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076737151.1\|1960313_1961744_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_023243859.1\|1961817_1962513_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_076737152.1\|1962592_1962904_-	hypothetical protein	NA	NA	NA	NA
WP_076737153.1\|1963553_1964750_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	6.7e-110	56.1
WP_076737711.1\|1965008_1965197_-	cold-shock protein	NA	NA	NA	NA
WP_000208509.1\|1965207_1965420_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_076737154.1\|1965874_1967143_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.6e-226	91.9
WP_000394197.1\|1967145_1967565_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_4

2055893 : 2066400

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076737179.1\|2055893_2057207_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	5.4e-52	35.1
WP_000565903.1\|2057233_2058313_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
WP_000648784.1\|2058317_2059091_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_076737180.1\|2059106_2060081_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973709.1\|2060086_2060638_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_023226689.1\|2060638_2061517_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
WP_001023664.1\|2061564_2062464_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000697846.1\|2062463_2063549_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_000981469.1\|2063925_2064819_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_076737181.1\|2064996_2066400_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	5.2e-21	26.5

DBSCAN-SWA_5

2143086 : 2152257

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195340.1\|2143086_2145120_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
WP_076737208.1\|2145360_2145819_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	4.2e-52	71.9
WP_076737209.1\|2145990_2146521_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2146577_2147045_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2147091_2147811_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|2147807_2149493_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240418.1\|2149715_2150447_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2150506_2150614_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|2150594_2151326_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2151309_2152257_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_6

3117861 : 3173560

Salmonella_phage(53.33%)

head,capsid,plate,tRNA,holin,tail,integrase,portal,terminase,lysis

attL 3113199:3113214|attR 3155644:3155659

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3113199:3113214	attL	NA	NA	NA	NA
WP_001264391.1\|3117861_3118875_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
WP_001144069.1\|3119102_3119318_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_000918865.1\|3119553_3121299_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
WP_001519776.1\|3121448_3123296_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_000237776.1\|3123419_3123926_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_076737424.1\|3124284_3124503_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	6.1e-38	97.2
WP_072142222.1\|3124569_3125739_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	1.1e-210	97.7
WP_000978861.1\|3125735_3126221_-\|tail	phage tail protein	Q6K1G5	Salmonella_virus	1.0e-85	100.0
WP_000069527.1\|3126235_3128677_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	94.1
WP_085984508.1\|3128669_3128825_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_076737425.1\|3128821_3129157_-\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	1.4e-52	99.1
WP_001207675.1\|3129219_3129738_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
WP_016505045.1\|3129753_3130941_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	3.8e-222	99.2
WP_020845008.1\|3131075_3131624_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	8.4e-100	98.9
WP_076737426.1\|3131636_3133613_-\|tail	tail fiber protein	S4TP62	Salmonella_phage	0.0e+00	99.1
WP_023135875.1\|3133623_3134154_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	2.7e-103	99.4
WP_016505041.1\|3134146_3135055_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	3.8e-158	98.3
WP_016505040.1\|3135061_3135409_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	4.7e-56	97.4
WP_016505039.1\|3135405_3136047_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	1.3e-112	98.1
WP_001293096.1\|3136115_3136565_-	phage virion morphogenesis protein	S4TP59	Salmonella_phage	4.2e-73	99.3
WP_001169074.1\|3136557_3137025_-\|tail	phage tail protein	S4TTA5	Salmonella_phage	1.1e-84	100.0
WP_072095626.1\|3136987_3137161_-\|lysis	phage lysis protein	Q6K1H9	Salmonella_virus	3.6e-25	98.2
WP_016505037.1\|3137132_3137546_-\|lysis	LysB family phage lysis regulatory protein	S4TRW3	Salmonella_phage	6.4e-44	98.5
WP_001144116.1\|3137542_3138040_-	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	1.2e-92	99.4
WP_000134659.1\|3138026_3138323_-\|holin	phage holin family protein	S4TP56	Salmonella_phage	4.4e-47	100.0
WP_000870102.1\|3138326_3138530_-\|tail	tail protein X	S4TTA0	Salmonella_phage	8.8e-31	97.0
WP_000214255.1\|3138529_3139036_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
WP_000203475.1\|3139129_3139879_-\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	6.4e-127	96.8
WP_023135431.1\|3139882_3140950_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	2.0e-198	99.4
WP_076737427.1\|3141026_3141881_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	9.5e-151	94.7
WP_076737428.1\|3142046_3143816_+\|terminase	terminase ATPase subunit family protein	S4TT96	Salmonella_phage	0.0e+00	98.3
WP_057520230.1\|3143815_3144862_+\|portal	phage portal protein	S4TNX7	Salmonella_phage	6.3e-189	98.6
WP_000033213.1\|3145200_3145749_-	hypothetical protein	NA	NA	NA	NA
WP_000381894.1\|3145859_3146591_-	hypothetical protein	Q37850	Escherichia_phage	5.1e-129	93.8
WP_000373435.1\|3146673_3147114_-	DinI family protein	A0A218M4I0	Erwinia_phage	2.6e-67	94.2
WP_076737429.1\|3147231_3149451_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	94.8
WP_153259982.1\|3149476_3150070_+	hypothetical protein	NA	NA	NA	NA
WP_000752604.1\|3150091_3150316_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	6.5e-35	100.0
WP_001246237.1\|3150315_3150543_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	6.8e-32	100.0
WP_000085639.1\|3150612_3150813_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	2.3e-31	98.5
WP_000920168.1\|3150799_3151027_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	2.1e-36	97.3
WP_076737430.1\|3151034_3151544_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	5.2e-88	97.6
WP_076737431.1\|3151574_3151838_-	hypothetical protein	A0A218M4I5	Erwinia_phage	2.0e-43	98.9
WP_076737432.1\|3151967_3152543_+	helix-turn-helix domain-containing protein	A0A218M4J1	Erwinia_phage	3.4e-59	57.6
WP_076737433.1\|3152542_3153556_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	6.5e-191	97.6
WP_076737434.1\|3153572_3154892_+	hypothetical protein	NA	NA	NA	NA
WP_076737435.1\|3155213_3155981_-	siderophore-interacting protein	NA	NA	NA	NA
3155644:3155659	attR	NA	NA	NA	NA
WP_086011941.1\|3156212_3156860_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_000478462.1\|3156856_3158425_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.2e-12	33.5
WP_076737436.1\|3158812_3160333_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	8.4e-33	47.8
WP_001576371.1\|3160763_3162143_+	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	1.0e-32	29.3
WP_023232313.1\|3162313_3164332_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_076737438.1\|3164412_3165549_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_000202966.1\|3165634_3166132_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_064000949.1\|3167064_3168063_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_001098833.1\|3168332_3169301_+	TerC family protein	I7HPH5	Enterobacteria_phage	5.0e-39	34.9
WP_000235363.1\|3169555_3170800_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_000422143.1\|3171249_3171912_+	DedA family protein	NA	NA	NA	NA
WP_000917516.1\|3171915_3172299_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_000877297.1\|3172443_3172812_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_000031219.1\|3172853_3173159_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000785626.1\|3173161_3173560_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019414

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection