CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019408	Salmonella enterica subsp. enterica serovar Crossness str. 1422-74 chromosome, complete genome	2 crisprs	WYL,DinG,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas7,cse2gr11,cas8e,PD-DExK	0	26	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019408_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019408_1

3017705-3018873

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACA	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

19 spacers

cas2,cas1,cas6e,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP019408_1

>merge|NZ_CP019408|1|3017705-3018873|CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACGTTTATTACTGCTTAGTTAATTAATGGGTTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGAATAATCTCTAATAGTCTCAATTCGTTCGGTTTATCCCCGCTGGCGCGGGGAACACTAAATCTGGCGTCGAGACATTCGAAATAGTGCCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTGATTTTGCTGCGATGTTATAACCAGACGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGTTACGTTCGGTAAATGGAAAGCGGCGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGAAAGTGCCGGTAGTGCCTGATGAACGACCGGTTTATCCCCGCTGGCGCGGGGAACACCGCGCCCACTTCCGTAAAATACAGATAATCCACGGTTTATCCCCGCTGGCGCGGGGAACACACCGTTCCGGTATGATCGAAGATACGGCAAACCGGTTTATCCCCGCTGGCGCGGGGAACACGGCAGCGGGCGAGGCAAACACATTCGGGGCGTCGGTTTATCCCCGCTGGCGCGGGGAACACATTTTATTTGACAAATTGGCGGCATCTCACTGCGGTTTATCCCCGCTGGCGCGGGGAACACCACCACACATAATGATTACTCCACTACCCAGCCGGTTTATCCCCGCTGGCGCGGGGAACACACTGCTTATCATTGATTTTATTGATTTTTCCCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019408|1|1|3017705-3018283|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGTTCCGGTATGATCGAAGATACGGCAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTATTTGACAAATTGGCGGCATCTCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCACACATAATGATTACTCCACTACCCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGCTTATCATTGATTTTATTGATTTTTCCC


>NZ_CP019408|1|1|3017705-3018282|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGTTCCGGTATGATCGAAGATACGGCAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTATTTGACAAATTGGCGGCATCTCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCACACATAATGATTACTCCACTACCCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGCTTATCATTGATTTTATTGATTTTTCCC


>NZ_CP019408|1|1|3017707-3018872|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACATT	TTTCAGCCCTTGTCGACTGCGGAACGCCCCTCG
GTTTATCCCCGCTGGCGCGGGGAACACG	CGAAATAGTGGGGAAAAACCCCTGGTTAACCCG
GTTTATCCCCGCTGGCGCGGGAAACACT	AGGCCTTGATACCATCGCTCGCACCTCGTCACG
GTTTATCCCCGCTGGCGCGGGGAACACG	TTTATTACTGCTTAGTTAATTAATGGGTTGCCG
GTTTATCCCCGCTGGCGCGGGGAACACA	GGCGAATAATCTCTAATAGTCTCAATTCGTTCG
GTTTATCCCCGCTGGCGCGGGGAACACT	AAATCTGGCGTCGAGACATTCGAAATAGTGCCG
GTTTATCCCCGCTGGCGCGGGGAACACT	CTTTTGATTTTGCTGCGATGTTATAACCAGACG
GTTTATCCCCGCTGGCGCGGGGAACACT	ATCCACATATACCCGCAATCATATTCAAGAACG
GTTTATCCCCGCTGGCGCGGGGAACACA	ATCACTGCGGGGGTATTTAGCGGAAACGGCTCG
GTTTATCCCCGCTGGCGCGGGGAACACG	ATCGAGTAACGTGCGCTGGAACGCGTCGG
CGCGGGGAACACAATTAAAGCCGAGGGT	GGCACCGCGCCTTATTCGGTTTATCCCCGCTGG
CGCGGGGAACACGTTACGTTCGGTAAAT	GGAAAGCGGCGAATATCGGTTTATCCCCGCTGG
CGCGGGGAACACCCAGAAAGTGCCGGTA	GTGCCTGATGAACGACCGGTTTATCCCCGCTGG
CGCGGGGAACACCGCGCCCACTTCCGTA	AAATACAGATAATCCACGGTTTATCCCCGCTGG
CGCGGGGAACACACCGTTCCGGTATGAT	CGAAGATACGGCAAACCGGTTTATCCCCGCTGG
CGCGGGGAACACGGCAGCGGGCGAGGCA	AACACATTCGGGGCGTCGGTTTATCCCCGCTGG
CGCGGGGAACACATTTTATTTGACAAAT	TGGCGGCATCTCACTGCGGTTTATCCCCGCTGG
CGCGGGGAACACCACCACACATAATGAT	TACTCCACTACCCAGCCGGTTTATCCCCGCTGG
CGCGGGGAACACACTGCTTATCATTGAT	TTTATTGATTTTTCCCCGGTTTATCCCCGCTGG
CGCGGGGAACA

>NZ_CP019408|1|2|3018296-3018873|CRT
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGTTCCGGTATGATCGAAGATACGGCAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTATTTGACAAATTGGCGGCATCTCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCACACATAATGATTACTCCACTACCCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGCTTATCATTGATTTTATTGATTTTTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019408|1|2|3018357-3018873|CRISPRCasFinder
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGTTCCGGTATGATCGAAGATACGGCAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTATTTGACAAATTGGCGGCATCTCACTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCACACATAATGATTACTCCACTACCCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTGCTTATCATTGATTTTATTGATTTTTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019408.1\|WP_000117946.1\|3022639_3023200_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019408.1\|WP_001145540.1\|3027871_3028825_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019408.1\|WP_000490481.1\|3016643_3017690_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019408.1\|WP_000144832.1\|3019262_3020183_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP019408.1\|WP_001518648.1\|3018969_3019263_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP019408.1\|WP_000741653.1\|3011838_3012549_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019408.1\|WP_000134246.1\|3010313_3011363_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019408.1\|WP_000372384.1\|3015484_3016393_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019408.1\|WP_000080390.1\|3029037_3029772_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019408.1\|WP_000281486.1\|3020179_3020830_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP019408.1\|WP_076731089.1\|3024764_3027428_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019408.1\|WP_000517480.1\|3012567_3012879_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019408.1\|WP_001092252.1\|3014035_3015475_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019408.1\|WP_001219244.1\|3011359_3011839_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019408.1\|WP_000368582.1\|3023196_3024753_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019408.1\|WP_001683461.1\|3013069_3013393_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP019408.1\|WP_001221537.1\|3009571_3010333_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019408.1\|WP_001290663.1\|3029847_3031560_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019408.1\|WP_000206416.1\|3021567_3022626_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP019408.1\|WP_001173663.1\|3013443_3014049_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NZ_CP019408.1\|WP_000117946.1\|3022639_3023200_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP019408.1\|WP_001145540.1\|3027871_3028825_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019408.1\|WP_000490481.1\|3016643_3017690_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019408.1\|WP_000144832.1\|3019262_3020183_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
NZ_CP019408.1\|WP_001518648.1\|3018969_3019263_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP019408.1\|WP_000741653.1\|3011838_3012549_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
NZ_CP019408.1\|WP_000134246.1\|3010313_3011363_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019408.1\|WP_000372384.1\|3015484_3016393_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019408.1\|WP_000080390.1\|3029037_3029772_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	8.83466e-139
NZ_CP019408.1\|WP_000281486.1\|3020179_3020830_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NZ_CP019408.1\|WP_076731089.1\|3024764_3027428_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019408.1\|WP_000517480.1\|3012567_3012879_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019408.1\|WP_001092252.1\|3014035_3015475_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019408.1\|WP_001219244.1\|3011359_3011839_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP019408.1\|WP_000368582.1\|3023196_3024753_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP019408.1\|WP_001683461.1\|3013069_3013393_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	5.46686e-48
NZ_CP019408.1\|WP_001221537.1\|3009571_3010333_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NZ_CP019408.1\|WP_001290663.1\|3029847_3031560_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019408.1\|WP_000206416.1\|3021567_3022626_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131
NZ_CP019408.1\|WP_001173663.1\|3013443_3014049_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146

>NZ_CP019408.1|WP_000490481.1|3016643_3017690_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019408.1|WP_000372384.1|3015484_3016393_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019408.1|WP_001092252.1|3014035_3015475_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019408.1|WP_001173663.1|3013443_3014049_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019408.1|WP_001683461.1|3013069_3013393_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATCAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019408.1|WP_000517480.1|3012567_3012879_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019408.1|WP_000741653.1|3011838_3012549_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019408.1|WP_001219244.1|3011359_3011839_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019408.1|WP_000134246.1|3010313_3011363_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019408.1|WP_001221537.1|3009571_3010333_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP019408.1|WP_001518648.1|3018969_3019263_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP019408.1|WP_000144832.1|3019262_3020183_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP019408.1|WP_000281486.1|3020179_3020830_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NZ_CP019408.1|WP_000206416.1|3021567_3022626_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NZ_CP019408.1|WP_000117946.1|3022639_3023200_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP019408.1|WP_000368582.1|3023196_3024753_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP019408.1|WP_076731089.1|3024764_3027428_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPDAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP019408.1|WP_001145540.1|3027871_3028825_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP019408.1|WP_000080390.1|3029037_3029772_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019408.1|WP_001290663.1|3029847_3031560_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPDILASLGELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Crispr_ID: NZ_CP019408_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019408_2

3035130-3036257

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACT	PILER-CR

18 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP019408_2

>merge|NZ_CP019408|2|3035130-3036257|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCCGTTCTGCCTCTTCGCACTCTCGATCAACGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCGTTCGTTGCCGGTATAGACCAGCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCATGTCAAACGCCATCAGCGTTCCGGCATCGGTTTATCCCCGCTAGCGCGGGGAACACAATCGCCAGCCTCGGAAATATTCCATCCTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACAGGAACTAAACAGCCTGACCGTTGAGGATCTGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGGTCCCCGGCCTCAATACCGCGCTGACGCGGTTTATCCCCGCTGGCGCGGGGAACACTTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAAAGCCACACCATTTTTTATTGACCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGACGTGGACGAGGAGTTACTCAACCGCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAAGTCAAACGGTTCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACA

>NZ_CP019408|2|3|3035130-3036256|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019408|2|3|3035130-3036256|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP019408|2|2|3035191-3036012|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGA	CGTGGACGAGGAGTTACTCAACCGCTGCCGG
TTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAA	GTCAAACGGTTCTGGAACGG


>NZ_CP019408|2|3|3036098-3036257|PILER-CR
	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGA	CGTGGACGAGGAGTTACTCAACCGCTGCCGG
TTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAA	GTCAAACGGTTCTGGAACGG
TTTATCCCCGCTGGCGCGGGGAACACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019408.1\|WP_000832395.1\|3046703_3047174_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP019408.1\|WP_001044459.1\|3045389_3046163_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP019408.1\|WP_001145540.1\|3027871_3028825_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019408.1\|WP_000210451.1\|3040605_3041406_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019408.1\|WP_000210863.1\|3038740_3040378_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019408.1\|WP_001208011.1\|3034234_3035032_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019408.1\|WP_000842512.1\|3042010_3042598_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP019408.1\|WP_076936815.1\|3031559_3033359_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019408.1\|WP_000080390.1\|3029037_3029772_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019408.1\|WP_000178265.1\|3046182_3046689_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP019408.1\|WP_000117946.1\|3022639_3023200_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP019408.1\|WP_000981789.1\|3042677_3045377_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP019408.1\|WP_000108313.1\|3033782_3034145_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019408.1\|WP_001199961.1\|3036552_3037224_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019408.1\|WP_001079648.1\|3047170_3047707_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP019408.1\|WP_000368582.1\|3023196_3024753_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP019408.1\|WP_076731089.1\|3024764_3027428_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP019408.1\|WP_000036734.1\|3037359_3038658_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019408.1\|WP_001290663.1\|3029847_3031560_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019408.1\|WP_000206416.1\|3021567_3022626_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP019408.1\|WP_000832395.1\|3046703_3047174_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.31755e-98
NZ_CP019408.1\|WP_001044459.1\|3045389_3046163_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP019408.1\|WP_001145540.1\|3027871_3028825_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019408.1\|WP_000210451.1\|3040605_3041406_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP019408.1\|WP_000210863.1\|3038740_3040378_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019408.1\|WP_001208011.1\|3034234_3035032_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.12831e-101
NZ_CP019408.1\|WP_000842512.1\|3042010_3042598_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP019408.1\|WP_076936815.1\|3031559_3033359_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019408.1\|WP_000080390.1\|3029037_3029772_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	8.83466e-139
NZ_CP019408.1\|WP_000178265.1\|3046182_3046689_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	9.51628e-105
NZ_CP019408.1\|WP_000117946.1\|3022639_3023200_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP019408.1\|WP_000981789.1\|3042677_3045377_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP019408.1\|WP_000108313.1\|3033782_3034145_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP019408.1\|WP_001199961.1\|3036552_3037224_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP019408.1\|WP_001079648.1\|3047170_3047707_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	3.25472e-123
NZ_CP019408.1\|WP_000368582.1\|3023196_3024753_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP019408.1\|WP_076731089.1\|3024764_3027428_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP019408.1\|WP_000036734.1\|3037359_3038658_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019408.1\|WP_001290663.1\|3029847_3031560_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019408.1\|WP_000206416.1\|3021567_3022626_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.35073e-131

>NZ_CP019408.1|WP_001208011.1|3034234_3035032_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019408.1|WP_000108313.1|3033782_3034145_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP019408.1|WP_076936815.1|3031559_3033359_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFTKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAVEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP019408.1|WP_001290663.1|3029847_3031560_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPDILASLGELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019408.1|WP_000080390.1|3029037_3029772_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019408.1|WP_001145540.1|3027871_3028825_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP019408.1|WP_076731089.1|3024764_3027428_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPDAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP019408.1|WP_000368582.1|3023196_3024753_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP019408.1|WP_000117946.1|3022639_3023200_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP019408.1|WP_000206416.1|3021567_3022626_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>NZ_CP019408.1|WP_001199961.1|3036552_3037224_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019408.1|WP_000036734.1|3037359_3038658_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019408.1|WP_000210863.1|3038740_3040378_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP019408.1|WP_000210451.1|3040605_3041406_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019408.1|WP_000842512.1|3042010_3042598_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP019408.1|WP_000981789.1|3042677_3045377_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVISDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGNQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP019408.1|WP_001044459.1|3045389_3046163_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP019408.1|WP_000178265.1|3046182_3046689_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPSTQLAGGDFNASATLVVDYQ
>NZ_CP019408.1|WP_000832395.1|3046703_3047174_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP019408.1|WP_001079648.1|3047170_3047707_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETVAQQRLDINAVQGTAFMLKEGITTINLQARLQKYAGEDVMPGEFKGSATVSFEYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019408_1	1.19\|3018284\|29\|NZ_CP019408\|PILER-CR	3018284-3018312	29	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337986-338014	5	0.828
NZ_CP019408_1	1.22\|3018463\|33\|NZ_CP019408\|PILER-CR	3018463-3018495	33	MT774487	Salmonella phage MG40, complete genome	21746-21778	6	0.818
NZ_CP019408_1	1.31\|3018447\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018447-3018478	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NZ_CP019408_1	1.9\|3018222\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3018222-3018253	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NZ_CP019408_1	1.9\|3018222\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3018222-3018253	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NZ_CP019408_1	1.9\|3018222\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3018222-3018253	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NZ_CP019408_1	1.31\|3018447\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018447-3018478	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NZ_CP019408_1	1.31\|3018447\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018447-3018478	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NZ_CP019408_1	1.31\|3018447\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018447-3018478	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NZ_CP019408_1	1.31\|3018447\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018447-3018478	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NZ_CP019408_1	1.34\|3018630\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018630-3018661	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
NZ_CP019408_1	1.35\|3018691\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018691-3018722	32	DQ838728	Lactococcus phage P335, complete genome	1117-1148	7	0.781
NZ_CP019408_2	2.13\|3035891\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035891-3035922	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NZ_CP019408_2	2.13\|3035891\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035891-3035922	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NZ_CP019408_2	2.13\|3035891\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035891-3035922	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NZ_CP019408_2	2.19\|3036139\|31\|NZ_CP019408\|PILER-CR	3036139-3036169	31	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	406309-406339	7	0.774
NZ_CP019408_2	2.19\|3036139\|31\|NZ_CP019408\|PILER-CR	3036139-3036169	31	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1840543-1840573	7	0.774
NZ_CP019408_2	2.19\|3036139\|31\|NZ_CP019408\|PILER-CR	3036139-3036169	31	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1220925-1220955	7	0.774
NZ_CP019408_2	2.19\|3036139\|31\|NZ_CP019408\|PILER-CR	3036139-3036169	31	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	718851-718881	7	0.774
NZ_CP019408_2	2.19\|3036139\|31\|NZ_CP019408\|PILER-CR	3036139-3036169	31	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	911450-911480	7	0.774
NZ_CP019408_1	1.2\|3017795\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3017795-3017826	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NZ_CP019408_1	1.8\|3018161\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3018161-3018192	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NZ_CP019408_1	1.8\|3018161\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3018161-3018192	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NZ_CP019408_1	1.22\|3018463\|33\|NZ_CP019408\|PILER-CR	3018463-3018495	33	JQ288021	Salmonella phage SPN3UB, complete genome	39451-39483	8	0.758
NZ_CP019408_1	1.22\|3018463\|33\|NZ_CP019408\|PILER-CR	3018463-3018495	33	MH370364	Salmonella phage S107, complete genome	29959-29991	8	0.758
NZ_CP019408_1	1.22\|3018463\|33\|NZ_CP019408\|PILER-CR	3018463-3018495	33	MH370382	Salmonella phage S135, complete genome	29959-29991	8	0.758
NZ_CP019408_1	1.22\|3018463\|33\|NZ_CP019408\|PILER-CR	3018463-3018495	33	MH370383	Salmonella phage S137, complete genome	29959-29991	8	0.758
NZ_CP019408_1	1.35\|3018691\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018691-3018722	32	NC_014754	Sulfuricurvum kujiense DSM 16994 plasmid pSULKU01, complete sequence	76425-76456	8	0.75
NZ_CP019408_2	2.5\|3035403\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035403-3035434	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
NZ_CP019408_2	2.5\|3035403\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035403-3035434	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
NZ_CP019408_2	2.5\|3035403\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035403-3035434	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
NZ_CP019408_2	2.5\|3035403\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035403-3035434	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
NZ_CP019408_2	2.7\|3035525\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035525-3035556	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
NZ_CP019408_2	2.7\|3035525\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035525-3035556	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
NZ_CP019408_2	2.8\|3035586\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035586-3035617	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
NZ_CP019408_2	2.18\|3036196\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3036196-3036227	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
NZ_CP019408_2	2.19\|3036139\|31\|NZ_CP019408\|PILER-CR	3036139-3036169	31	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353299-353329	8	0.742
NZ_CP019408_1	1.11\|3017796\|33\|NZ_CP019408\|PILER-CR	3017796-3017828	33	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10089	9	0.727
NZ_CP019408_1	1.28\|3018829\|33\|NZ_CP019408\|PILER-CR	3018829-3018861	33	NZ_CP034114	Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence	2990-3022	9	0.727
NZ_CP019408_1	1.28\|3018829\|33\|NZ_CP019408\|PILER-CR	3018829-3018861	33	NZ_CP043846	Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence	16198-16230	9	0.727
NZ_CP019408_1	1.28\|3018829\|33\|NZ_CP019408\|PILER-CR	3018829-3018861	33	NZ_CP034117	Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence	10125-10157	9	0.727
NZ_CP019408_1	1.31\|3018447\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018447-3018478	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NZ_CP019408_1	1.35\|3018691\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018691-3018722	32	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	527800-527831	9	0.719
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP043846	Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence	16198-16229	9	0.719
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP034117	Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence	10125-10156	9	0.719
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP034114	Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence	2991-3022	9	0.719
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP017904	Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence	177881-177912	9	0.719
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP017901	Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence	183537-183568	9	0.719
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP026804	Shigella flexneri strain 89-141 plasmid unnamed1	244387-244418	9	0.719
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP017909	Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence	180101-180132	9	0.719
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP017893	Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence	161475-161506	9	0.719
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP017898	Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence	182902-182933	9	0.719
NZ_CP019408_2	2.5\|3035403\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035403-3035434	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
NZ_CP019408_2	2.5\|3035403\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035403-3035434	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
NZ_CP019408_2	2.5\|3035403\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035403-3035434	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
NZ_CP019408_2	2.9\|3035647\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035647-3035678	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
NZ_CP019408_2	2.10\|3035708\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035708-3035739	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NZ_CP019408_2	2.13\|3035891\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035891-3035922	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NZ_CP019408_2	2.13\|3035891\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035891-3035922	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NZ_CP019408_2	2.13\|3035891\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035891-3035922	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NZ_CP019408_2	2.14\|3035952\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035952-3035983	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
NZ_CP019408_2	2.14\|3035952\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035952-3035983	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
NZ_CP019408_2	2.17\|3036135\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3036135-3036166	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
NZ_CP019408_2	2.17\|3036135\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3036135-3036166	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
NZ_CP019408_2	2.17\|3036135\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3036135-3036166	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
NZ_CP019408_2	2.19\|3036139\|31\|NZ_CP019408\|PILER-CR	3036139-3036169	31	AM749121	Streptococcus phage M102 complete genome	7893-7923	9	0.71
NZ_CP019408_2	2.19\|3036139\|31\|NZ_CP019408\|PILER-CR	3036139-3036169	31	NC_012884	Streptococcus phage M102, complete genome	7893-7923	9	0.71
NZ_CP019408_1	1.1\|3017734\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3017734-3017765	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NZ_CP019408_1	1.1\|3017734\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3017734-3017765	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NZ_CP019408_1	1.33\|3018569\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018569-3018600	32	NC_024995	Gluconacetobacter europaeus plasmid pGE3 genomic DNA, complete sequence, strain: KGMA0119	5043-5074	10	0.688
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP044540	Borrelia sp. CA690 plasmid lp17, complete sequence	10481-10512	10	0.688
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_LR215005	Mycoplasma conjunctivae strain NCTC10147 plasmid 9	126578-126609	10	0.688
NZ_CP019408_2	2.1\|3035159\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3035159-3035190	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP019408_2	2.4\|3035342\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035342-3035373	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
NZ_CP019408_2	2.9\|3035647\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035647-3035678	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
NZ_CP019408_2	2.9\|3035647\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035647-3035678	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
NZ_CP019408_2	2.9\|3035647\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035647-3035678	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
NZ_CP019408_2	2.9\|3035647\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035647-3035678	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
NZ_CP019408_2	2.9\|3035647\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035647-3035678	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
NZ_CP019408_2	2.9\|3035647\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035647-3035678	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
NZ_CP019408_2	2.9\|3035647\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035647-3035678	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
NZ_CP019408_2	2.9\|3035647\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035647-3035678	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
NZ_CP019408_2	2.16\|3036074\|32\|NZ_CP019408\|CRISPRCasFinder,CRT	3036074-3036105	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
NZ_CP019408_1	1.37\|3018813\|32\|NZ_CP019408\|CRT,CRISPRCasFinder	3018813-3018844	32	NZ_CP041669	Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence	45678-45709	11	0.656
NZ_CP019408_2	2.13\|3035891\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035891-3035922	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NZ_CP019408_2	2.13\|3035891\|32\|NZ_CP019408\|CRISPRCasFinder,CRT,PILER-CR	3035891-3035922	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 1.19|3018284|29|NZ_CP019408|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.828

cgatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
cgattgaggaacgtgcgctggaacgatta	Protospacer
****.*** ****************  *

2. spacer 1.22|3018463|33|NZ_CP019408|PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.818

cccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
cccagccagtgccggtagtgcctgatgaaatgg	Protospacer
*****  **********************  .

3. spacer 1.31|3018447|32|NZ_CP019408|CRT,CRISPRCasFinder matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  .

4. spacer 1.9|3018222|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

5. spacer 1.9|3018222|32|NZ_CP019408|CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

6. spacer 1.9|3018222|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

7. spacer 1.31|3018447|32|NZ_CP019408|CRT,CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

8. spacer 1.31|3018447|32|NZ_CP019408|CRT,CRISPRCasFinder matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

9. spacer 1.31|3018447|32|NZ_CP019408|CRT,CRISPRCasFinder matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

10. spacer 1.31|3018447|32|NZ_CP019408|CRT,CRISPRCasFinder matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

11. spacer 1.34|3018630|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgggcgaggcaaacacattcggggcgt	CRISPR spacer
gccacggcgcgaggcaaacacattcaggtcgc	Protospacer
* **  * *****************.** **.

12. spacer 1.35|3018691|32|NZ_CP019408|CRT,CRISPRCasFinder matches to DQ838728 (Lactococcus phage P335, complete genome) position: , mismatch: 7, identity: 0.781

attttatttgacaaattggcggcatctcactg-	CRISPR spacer
ttgttatttcagaaattggcggcatc-cgctat	Protospacer
 * ****** * ************** *.**.

13. spacer 2.13|3035891|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

14. spacer 2.13|3035891|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

15. spacer 2.13|3035891|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

16. spacer 2.19|3036139|31|NZ_CP019408|PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

17. spacer 2.19|3036139|31|NZ_CP019408|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

18. spacer 2.19|3036139|31|NZ_CP019408|PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

19. spacer 2.19|3036139|31|NZ_CP019408|PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

20. spacer 2.19|3036139|31|NZ_CP019408|PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.774

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ctcggcggacgaggagttgctcaaccgcgcc	Protospacer
*   *.************.*********  *

21. spacer 1.2|3017795|32|NZ_CP019408|CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

22. spacer 1.8|3018161|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

23. spacer 1.8|3018161|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

24. spacer 1.22|3018463|33|NZ_CP019408|PILER-CR matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 8, identity: 0.758

cccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
agcagccagtgccggtagtgcctgatgaaatgg	Protospacer
  ***  **********************  .

25. spacer 1.22|3018463|33|NZ_CP019408|PILER-CR matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 8, identity: 0.758

cccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
agcagccagtgccggtagtgcctgatgaaatgg	Protospacer
  ***  **********************  .

26. spacer 1.22|3018463|33|NZ_CP019408|PILER-CR matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 8, identity: 0.758

cccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
agcagccagtgccggtagtgcctgatgaaatgg	Protospacer
  ***  **********************  .

27. spacer 1.22|3018463|33|NZ_CP019408|PILER-CR matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 8, identity: 0.758

cccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
agcagccagtgccggtagtgcctgatgaaatgg	Protospacer
  ***  **********************  .

28. spacer 1.35|3018691|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NC_014754 (Sulfuricurvum kujiense DSM 16994 plasmid pSULKU01, complete sequence) position: , mismatch: 8, identity: 0.75

attttatttgacaaattggcggcatctcactg	CRISPR spacer
cctttttttgtcaaattggcggcatacggctg	Protospacer
 .*** **** ************** . .***

29. spacer 2.5|3035403|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************

30. spacer 2.5|3035403|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

31. spacer 2.5|3035403|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

32. spacer 2.5|3035403|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** *******

33. spacer 2.7|3035525|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

34. spacer 2.7|3035525|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

35. spacer 2.8|3035586|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgccagcctcggaaatattccatcctccg	CRISPR spacer
ggttgccagccccggaagtattccatctccca	Protospacer
..*.*******.*****.*********..**.

36. spacer 2.18|3036196|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taatggccacagtaagtcaaacggttctggaa	CRISPR spacer
cggtggccacagtaaggcacacggttcggcag	Protospacer
...************* ** ******* * *.

37. spacer 2.19|3036139|31|NZ_CP019408|PILER-CR matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 8, identity: 0.742

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttcagtggacgaggagttcctcacccgcacc	Protospacer
.   ************** **** ****  *

38. spacer 1.11|3017796|33|NZ_CP019408|PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 9, identity: 0.727

cgcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
ttttcaatattggggaaaaacccctcgttacct	Protospacer
. .  **** *************** **** *.

39. spacer 1.28|3018829|33|NZ_CP019408|PILER-CR matches to NZ_CP034114 (Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence) position: , mismatch: 9, identity: 0.727

cactgcttatcattgattttattgatttttccc	CRISPR spacer
ccttttttagctttgattttattgatttttaga	Protospacer
* .* .*** * ******************

40. spacer 1.28|3018829|33|NZ_CP019408|PILER-CR matches to NZ_CP043846 (Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

cactgcttatcattgattttattgatttttccc	CRISPR spacer
ccttttttagctttgattttattgatttttaga	Protospacer
* .* .*** * ******************

41. spacer 1.28|3018829|33|NZ_CP019408|PILER-CR matches to NZ_CP034117 (Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence) position: , mismatch: 9, identity: 0.727

cactgcttatcattgattttattgatttttccc	CRISPR spacer
ccttttttagctttgattttattgatttttaga	Protospacer
* .* .*** * ******************

42. spacer 1.31|3018447|32|NZ_CP019408|CRT,CRISPRCasFinder matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******

43. spacer 1.35|3018691|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 9, identity: 0.719

attttatttgacaaattggcggcatctcactg	CRISPR spacer
attctatttgacacattggcggcgccgagcca	Protospacer
***.********* *********..*  .*..

44. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP043846 (Staphylococcus epidermidis strain ATCC 12228 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
cttttttagctttgattttattgatttttaga	Protospacer
 .* .*** * ******************

45. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP034117 (Staphylococcus epidermidis strain CDC121 plasmid pSTA482, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
cttttttagctttgattttattgatttttaga	Protospacer
 .* .*** * ******************

46. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP034114 (Staphylococcus epidermidis strain CDC120 plasmid pSTA493, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
cttttttagctttgattttattgatttttaga	Protospacer
 .* .*** * ******************

47. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

48. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

49. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP026804 (Shigella flexneri strain 89-141 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
tgtaataatcaataattttattgatttttcga	Protospacer
  *. * **** *.****************

50. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

51. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

52. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 9, identity: 0.719

actgcttatcattgattttattgatttttccc	CRISPR spacer
gttgcttaccattgattatattgataccagcc	Protospacer
..******.******** ******* ..  **

53. spacer 2.5|3035403|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

54. spacer 2.5|3035403|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

55. spacer 2.5|3035403|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

56. spacer 2.9|3035647|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
tcctcctggacaggctgaccgttgacgatctg	Protospacer
     **..**** *********** ******

57. spacer 2.10|3035708|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

58. spacer 2.13|3035891|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

59. spacer 2.13|3035891|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

60. spacer 2.13|3035891|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

61. spacer 2.14|3035952|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

62. spacer 2.14|3035952|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

63. spacer 2.17|3036135|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
gttcagtggacgaggagttcctcacccgcacc	Protospacer
 .   ************** **** ****  *

64. spacer 2.17|3036135|32|NZ_CP019408|CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

65. spacer 2.17|3036135|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

66. spacer 2.19|3036139|31|NZ_CP019408|PILER-CR matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.71

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
tgggctggaccaggagttactccaccgcctt	Protospacer
.*.  ***** *********** *****. .

67. spacer 2.19|3036139|31|NZ_CP019408|PILER-CR matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.71

cgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
tgggctggaccaggagttactccaccgcctt	Protospacer
.*.  ***** *********** *****. .

68. spacer 1.1|3017734|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

69. spacer 1.1|3017734|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

70. spacer 1.33|3018569|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NC_024995 (Gluconacetobacter europaeus plasmid pGE3 genomic DNA, complete sequence, strain: KGMA0119) position: , mismatch: 10, identity: 0.688

accgttccggtatgatcgaagatacggcaaac	CRISPR spacer
tcccttccgatatgatcgaagatagtcctgtt	Protospacer
 ** *****.**************   * . .

71. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP044540 (Borrelia sp. CA690 plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.688

actgcttatcattgattttattgatttttccc	CRISPR spacer
cattaaagtcatttattttattggtttttccg	Protospacer
  *    .***** *********.*******

72. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_LR215005 (Mycoplasma conjunctivae strain NCTC10147 plasmid 9) position: , mismatch: 10, identity: 0.688

actgcttatcattgattttattgatttttccc	CRISPR spacer
ttctttcatcattgattttcttgatttctcaa	Protospacer
 .. .*.************ *******.**

73. spacer 2.1|3035159|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

74. spacer 2.4|3035342|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..

75. spacer 2.9|3035647|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

76. spacer 2.9|3035647|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

77. spacer 2.9|3035647|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

78. spacer 2.9|3035647|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

79. spacer 2.9|3035647|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

80. spacer 2.9|3035647|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

81. spacer 2.9|3035647|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

82. spacer 2.9|3035647|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

83. spacer 2.16|3036074|32|NZ_CP019408|CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

gtggtggcctcaaataaattcgagcgctggag	CRISPR spacer
aaacttgcctcaaataaattcgcgcggtgttc	Protospacer
. . * **************** *** **

84. spacer 1.37|3018813|32|NZ_CP019408|CRT,CRISPRCasFinder matches to NZ_CP041669 (Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

actgcttatcattgattttattgatttttccc	CRISPR spacer
ttgatttattattgattttattcattttatta	Protospacer
 . ..****.************ ***** ..

85. spacer 2.13|3035891|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

86. spacer 2.13|3035891|32|NZ_CP019408|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

990475 : 997787

Dickeya_phage(16.67%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201751.1\|990475_991594_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125890.1\|991590_993537_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_000447499.1\|993666_993888_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|994211_994532_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934063.1\|994562_996839_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_001117984.1\|997050_997248_-	hypothetical protein	NA	NA	NA	NA
WP_001531374.1\|997409_997787_-	hypothetical protein	A0A077KET4	Ralstonia_phage	1.7e-19	40.2

DBSCAN-SWA_2

1069197 : 1114633

Enterobacteria_phage(30.77%)

tail,head,plate,holin,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001262306.1\|1069197_1070490_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000065276.1\|1070534_1070783_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1070823_1071063_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001539618.1\|1071105_1072263_-	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_076936788.1\|1072225_1075615_-	PD-(D/E)XK nuclease-like domain-containing protein	K7P6V4	Enterobacteria_phage	0.0e+00	93.3
WP_000407050.1\|1075755_1076043_-	hypothetical protein	K7P7B3	Enterobacteria_phage	1.0e-48	100.0
WP_000711201.1\|1076128_1076287_-	hypothetical protein	K7P7H7	Enterobacteria_phage	1.4e-23	100.0
WP_000248003.1\|1076320_1076527_-	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	4.3e-33	100.0
WP_061351284.1\|1076691_1077129_-	hypothetical protein	K7P7N6	Enterobacteria_phage	6.1e-77	98.6
WP_076936789.1\|1077928_1078147_+	hypothetical protein	K7P7I0	Enterobacteria_phage	1.5e-28	92.5
WP_000432054.1\|1078177_1079044_-	hypothetical protein	M9NYX6	Enterobacteria_phage	3.5e-153	100.0
WP_000239214.1\|1079090_1079867_-	helix-turn-helix transcriptional regulator	A0A088CBP2	Shigella_phage	1.2e-115	77.1
WP_001069003.1\|1079951_1080197_+	hypothetical protein	A0A088CE43	Shigella_phage	4.5e-29	82.2
WP_054626097.1\|1080237_1080459_+	transcriptional regulator	NA	NA	NA	NA
WP_076936790.1\|1080541_1081396_+	replication protein	K7PGT1	Enterobacteria_phage	7.5e-63	47.1
WP_076936791.1\|1081398_1082253_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	2.8e-94	68.3
WP_076936792.1\|1082249_1082594_+	winged helix-turn-helix transcriptional regulator	K7PHG5	Enterobacteria_phage	5.0e-50	86.8
WP_076936793.1\|1083817_1084624_+	hypothetical protein	K7P6H7	Enterobacteria_phage	3.7e-80	62.3
WP_059343112.1\|1084620_1084956_+	hypothetical protein	K7P7P8	Enterobacteria_phage	6.5e-55	98.2
WP_032180568.1\|1085169_1085607_+	recombination protein NinB	G8C7V3	Escherichia_phage	2.6e-59	77.9
WP_054626103.1\|1085606_1085777_+	hypothetical protein	G8C7V4	Escherichia_phage	2.9e-11	60.0
WP_054626104.1\|1085769_1086060_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.8e-46	91.7
WP_076936794.1\|1086056_1086419_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	1.5e-57	90.8
WP_078061073.1\|1086415_1086562_+	YlcG family protein	K7PHH3	Enterobacteria_phage	6.0e-13	80.5
WP_076936795.1\|1086558_1087248_+	antiterminator	I6PDF8	Cronobacter_phage	1.8e-59	50.6
WP_020898615.1\|1087737_1087926_+	hypothetical protein	NA	NA	NA	NA
WP_001526513.1\|1088128_1088431_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_020898616.1\|1088408_1088897_+	lysozyme	M9P0E5	Enterobacteria_phage	2.3e-56	67.5
WP_109511103.1\|1088917_1089358_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.8e-52	77.3
WP_001113128.1\|1089583_1089766_+	DUF826 domain-containing protein	NA	NA	NA	NA
WP_052938916.1\|1089836_1090463_+	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	1.8e-106	98.1
WP_023260972.1\|1090465_1092085_+	hypothetical protein	A0A0M5M1R6	Salmonella_phage	9.6e-261	81.2
WP_023260971.1\|1092084_1093605_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	1.5e-106	43.9
WP_023260970.1\|1093645_1094335_+\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	4.9e-57	48.7
WP_016716092.1\|1094331_1095678_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	5.5e-68	36.5
WP_001091402.1\|1095679_1096162_+	hypothetical protein	K4HYQ5	Acinetobacter_phage	5.8e-20	41.2
WP_001031913.1\|1096161_1097190_+	hypothetical protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
WP_000829560.1\|1097193_1097541_+	hypothetical protein	H9C0V9	Aeromonas_phage	3.9e-10	40.2
WP_000521217.1\|1097547_1098003_+	DUF4054 domain-containing protein	A0A068CGG9	Acinetobacter_phage	2.4e-15	40.8
WP_076936796.1\|1097996_1098581_+	hypothetical protein	H9C0W2	Aeromonas_phage	4.7e-16	30.3
WP_001048637.1\|1098577_1098943_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	3.0e-21	40.5
WP_000094504.1\|1098927_1099473_+	hypothetical protein	NA	NA	NA	NA
WP_016716087.1\|1099453_1100938_+	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	3.1e-96	41.0
WP_000016414.1\|1100938_1101385_+	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
WP_000101348.1\|1101384_1101789_+	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
WP_000228831.1\|1101830_1102013_+	hypothetical protein	NA	NA	NA	NA
WP_058651977.1\|1101996_1104168_+	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.4e-49	67.1
WP_076936797.1\|1104164_1104875_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	1.4e-27	34.6
WP_058651976.1\|1104874_1105177_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	2.7e-23	48.5
WP_000122818.1\|1105173_1106043_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	9.1e-32	32.7
WP_060629039.1\|1106023_1106701_+	hypothetical protein	A0A077KAY0	Edwardsiella_phage	3.2e-32	36.4
WP_046376837.1\|1106713_1107070_+	hypothetical protein	A0A077KCA1	Edwardsiella_phage	9.5e-20	49.1
WP_023257605.1\|1107066_1108308_+\|plate	baseplate J/gp47 family protein	A0A077KGW9	Edwardsiella_phage	1.2e-101	49.9
WP_001181748.1\|1108309_1108912_+	DUF2612 domain-containing protein	A0A2R3UAM9	Myoviridae_environmental_samples	4.3e-33	38.9
WP_076936798.1\|1108901_1110353_+\|tail	tail fiber protein	E5G6P0	Salmonella_phage	4.5e-60	85.6
WP_023888900.1\|1110349_1111159_+	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	3.1e-143	93.5
WP_020898635.1\|1111162_1111738_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	7.2e-94	88.4
WP_020898636.1\|1111933_1112671_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_076730937.1\|1113150_1113951_-	hypothetical protein	NA	NA	NA	NA
WP_000497442.1\|1114426_1114633_-	DinI-like family protein	S4TNM0	Salmonella_phage	4.5e-30	98.5

DBSCAN-SWA_3

1292105 : 1341474

Enterobacteria_phage(34.09%)

capsid,tail,head,transposase,terminase,tRNA,holin,portal,integrase,lysis

attL 1284183:1284196|attR 1298721:1298734

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1284183:1284196	attL	NA	NA	NA	NA
WP_000004540.1\|1292105_1293212_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476070.1\|1293265_1293727_-	NUDIX hydrolase	NA	NA	NA	NA
WP_000825956.1\|1293738_1294068_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_001249405.1\|1294064_1294730_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444509.1\|1294901_1296152_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
WP_000741325.1\|1296265_1297408_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21929	Phage_21	8.2e-174	80.3
WP_000089141.1\|1297397_1297634_-	excisionase	NA	NA	NA	NA
WP_057517787.1\|1297776_1298316_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	5.9e-98	99.4
WP_023195414.1\|1298452_1299280_-	DUF2303 family protein	Q8HAA2	Salmonella_phage	9.2e-151	98.2
1298721:1298734	attR	NA	NA	NA	NA
WP_076936799.1\|1299337_1299709_-	hypothetical protein	Q8HAA1	Salmonella_phage	1.9e-63	99.2
WP_071586821.1\|1300249_1300588_+	hypothetical protein	NA	NA	NA	NA
WP_023262052.1\|1300525_1300834_-	hypothetical protein	I6PDF6	Cronobacter_phage	5.0e-09	80.0
WP_001749159.1\|1301008_1301683_-	LexA family transcriptional regulator	U5P0T5	Shigella_phage	1.7e-115	86.9
WP_076166335.1\|1301771_1301972_+	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	3.3e-22	81.5
WP_046093492.1\|1302015_1302570_+	hypothetical protein	A0A1C9II13	Salmonella_phage	7.6e-101	98.9
WP_071587914.1\|1302733_1302913_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	9.2e-16	70.9
WP_000104924.1\|1302902_1303862_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.6e-117	80.9
WP_001669427.1\|1303863_1304346_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	6.0e-86	98.1
WP_076936801.1\|1304345_1304999_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	6.4e-115	89.4
WP_060629020.1\|1304995_1305385_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	1.1e-61	86.0
WP_076936802.1\|1305401_1306262_+	KilA-N domain-containing protein	A0A192Y6F8	Salmonella_phage	2.3e-160	98.6
WP_076936827.1\|1306269_1307259_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	1.3e-191	97.9
WP_076731003.1\|1307272_1308025_+	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-137	94.8
WP_000508329.1\|1308204_1308423_+	hypothetical protein	NA	NA	NA	NA
WP_076936803.1\|1308703_1308892_+	hypothetical protein	NA	NA	NA	NA
WP_023139352.1\|1309060_1309267_+	hypothetical protein	NA	NA	NA	NA
WP_022742726.1\|1309257_1309803_-	hypothetical protein	NA	NA	NA	NA
WP_001526513.1\|1309994_1310297_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_058145134.1\|1310274_1310763_+	lysozyme	M9P0E5	Enterobacteria_phage	2.1e-57	68.8
WP_149866254.1\|1310783_1311224_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	5.2e-52	77.3
WP_000669693.1\|1311460_1311862_-	PPC domain-containing protein	NA	NA	NA	NA
WP_001102153.1\|1312147_1312693_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000623092.1\|1312664_1314596_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.3e-259	65.9
WP_000201415.1\|1314579_1314783_+	gpW family protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_023237960.1\|1314779_1316360_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.3e-189	63.0
WP_047594315.1\|1316349_1317846_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	4.0e-96	52.1
WP_047588326.1\|1317858_1318206_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.4e-20	53.8
WP_000522566.1\|1318260_1319289_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000201485.1\|1319346_1319712_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_000083293.1\|1319722_1320100_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-28	55.6
WP_000677089.1\|1320086_1320665_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000033885.1\|1320661_1321063_+\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000971954.1\|1321070_1321817_+	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000479607.1\|1321867_1322263_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_010989052.1\|1322259_1322598_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_076936805.1\|1322569_1325611_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.0e-284	63.4
WP_000447369.1\|1325613_1325943_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_001152690.1\|1325952_1326651_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	9.3e-104	76.3
WP_000662740.1\|1326657_1327395_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-128	84.6
WP_023196420.1\|1327292_1327940_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.2e-89	78.1
WP_001537444.1\|1328002_1331365_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	80.4
WP_000178851.1\|1331403_1331646_+	hypothetical protein	NA	NA	NA	NA
WP_076936806.1\|1331699_1334141_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	6.2e-86	61.7
WP_000143179.1\|1334140_1334725_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-87	84.8
WP_031609383.1\|1334821_1335022_-	phage virulence factor PagK family protein	NA	NA	NA	NA
WP_076936807.1\|1337251_1339363_+	type III secretion system effector E3 ubiquitin transferase SspH1	Q9MBL9	Phage_Gifsy-2	2.1e-26	46.9
WP_000334551.1\|1339682_1340354_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-80	59.9
WP_012218897.1\|1340607_1340820_+	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
WP_000502119.1\|1341015_1341474_+\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5

DBSCAN-SWA_4

2093093 : 2100345

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157304.1\|2093093_2094524_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	57.4
WP_000377037.1\|2094597_2095293_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	1.6e-07	27.1
WP_000107434.1\|2095372_2095684_-	hypothetical protein	NA	NA	NA	NA
WP_001080662.1\|2096334_2097531_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	56.1
WP_024131109.1\|2097788_2097977_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2097987_2098200_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457664.1\|2098654_2099923_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.2e-226	92.2
WP_000394197.1\|2099925_2100345_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_5

2189701 : 2201273

Enterobacteria_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2189701_2191015_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565905.1\|2191041_2192121_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
WP_000648784.1\|2192125_2192899_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018226.1\|2192895_2193888_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973708.1\|2193893_2194445_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
WP_000857529.1\|2194445_2195324_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
WP_001023662.1\|2195371_2196271_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000697840.1\|2196270_2197356_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_000654812.1\|2198523_2199492_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	2.1e-186	99.7
WP_001111845.1\|2199869_2201273_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	6.8e-21	26.5

DBSCAN-SWA_6

2270615 : 2279786

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195330.1\|2270615_2272649_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2272889_2273348_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197951.1\|2273519_2274050_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2274106_2274574_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2274620_2275340_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|2275336_2277022_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240417.1\|2277244_2277976_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2278035_2278143_+	protein YohO	NA	NA	NA	NA
WP_000824857.1\|2278123_2278855_-	ABC transporter permease	NA	NA	NA	NA
WP_000569165.1\|2278838_2279786_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_7

2299193 : 2365210

Salmonella_phage(28.57%)

tail,transposase,lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000989295.1\|2299193_2299889_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_000553526.1\|2300042_2300927_+	cytidine deaminase	NA	NA	NA	NA
WP_000920081.1\|2301103_2301823_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_000605187.1\|2301819_2302065_+	DUF2542 family protein	NA	NA	NA	NA
WP_000502119.1\|2302840_2303299_-\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_000956097.1\|2304215_2305451_+	NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA	NA	NA	NA
WP_001275101.1\|2305525_2306536_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_000535907.1\|2306551_2308072_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.0e-09	31.9
WP_001036943.1\|2308205_2309204_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_000628631.1\|2309702_2310725_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_001520237.1\|2310874_2312017_-	DUF418 family protein	NA	NA	NA	NA
WP_001139611.1\|2312031_2312700_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	4.1e-56	56.3
WP_000425488.1\|2313029_2313887_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000876817.1\|2313875_2314265_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001531764.1\|2314269_2315637_-	L-serine ammonia-lyase	NA	NA	NA	NA
WP_000022910.1\|2315853_2316741_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_000023807.1\|2316773_2318096_+	MFS transporter	NA	NA	NA	NA
WP_000488244.1\|2318139_2320131_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	6.7e-14	37.9
WP_000535000.1\|2320476_2321946_-	lysine-specific permease	NA	NA	NA	NA
WP_000548316.1\|2322135_2322999_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000137966.1\|2323119_2324169_+	YeiH family protein	NA	NA	NA	NA
WP_000873906.1\|2324247_2325105_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	1.3e-22	28.5
WP_000854395.1\|2325169_2326858_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_000091249.1\|2326874_2327813_-	1-phosphofructokinase	NA	NA	NA	NA
WP_000487287.1\|2327812_2328943_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_000551937.1\|2329310_2330492_+	sugar efflux transporter SetB	NA	NA	NA	NA
WP_001213897.1\|2330555_2331221_-	membrane protein	NA	NA	NA	NA
WP_001519564.1\|2331222_2331345_-	membrane protein	NA	NA	NA	NA
WP_001523448.1\|2331732_2331987_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001136822.1\|2332310_2332883_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_000169346.1\|2333095_2334082_+	GTP-binding protein	NA	NA	NA	NA
WP_000178095.1\|2334111_2334831_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_000241015.1\|2335244_2335817_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	8.1e-13	38.9
WP_000957755.1\|2336142_2337699_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_000561742.1\|2337805_2339611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000501626.1\|2339620_2340715_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_001137747.1\|2340714_2341740_+	ABC transporter permease	NA	NA	NA	NA
WP_000222013.1\|2341741_2343331_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	7.2e-19	32.1
WP_001094639.1\|2343334_2343679_-	hypothetical protein	NA	NA	NA	NA
WP_000213347.1\|2344069_2345260_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.4e-19	22.2
WP_001234834.1\|2345287_2345983_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_000578130.1\|2346134_2347895_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	1.4e-100	41.8
WP_000494192.1\|2348019_2348304_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_000033443.1\|2348412_2349033_-	hypothetical protein	NA	NA	NA	NA
WP_000050806.1\|2349060_2350068_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	4.5e-83	48.3
WP_001135904.1\|2350247_2350475_+	YejL family protein	NA	NA	NA	NA
WP_000256150.1\|2350506_2352267_+	cardiolipin transport protein PbgA	NA	NA	NA	NA
WP_000806401.1\|2352547_2353051_-	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3
WP_000884778.1\|2353078_2353369_+	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_000639473.1\|2353716_2355546_+	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
WP_000022213.1\|2355599_2356043_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
WP_001215679.1\|2356420_2356948_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
WP_000554739.1\|2356950_2358192_-	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
WP_001120499.1\|2358784_2359114_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
WP_000894638.1\|2359410_2360742_+	NTPase	R9TRQ8	Vibrio_phage	4.6e-19	28.5
WP_010989045.1\|2360770_2361139_-	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
WP_001202279.1\|2361153_2362143_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
WP_001115840.1\|2362471_2364838_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
WP_001113462.1\|2365006_2365210_-\|tail	tail protein	NA	NA	NA	NA

DBSCAN-SWA_8

4347653 : 4369703

Burkholderia_phage(40.0%)

holin,tail,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000587740.1\|4347653_4348382_-	hypothetical protein	A0A077SLK3	Escherichia_phage	7.3e-35	37.3
WP_024132246.1\|4348960_4349377_-	serine acetyltransferase	NA	NA	NA	NA
WP_000084336.1\|4349757_4350213_-	hypothetical protein	NA	NA	NA	NA
WP_001151758.1\|4350209_4350824_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000368193.1\|4350830_4352489_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.8e-52	52.7
WP_000359509.1\|4352491_4353124_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	8.6e-24	56.4
WP_000951734.1\|4353116_4354232_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	3.1e-101	52.2
WP_001093501.1\|4354222_4354582_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000632053.1\|4354745_4356293_-	hypothetical protein	B9UDL6	Salmonella_phage	3.8e-49	29.9
WP_000703633.1\|4356292_4357222_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	1.4e-150	84.1
WP_000593182.1\|4357218_4357581_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000679398.1\|4357908_4358631_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
WP_000818154.1\|4358640_4359684_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_001269716.1\|4359671_4359881_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271423.1\|4359880_4360834_-	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262499.1\|4360833_4363188_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
WP_001185654.1\|4363284_4363413_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003642.1\|4363372_4363690_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000654812.1\|4364015_4364984_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	2.1e-186	99.7
WP_000729852.1\|4365331_4366759_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000875314.1\|4366748_4366946_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449433.1\|4366942_4367398_-	Gp37 family protein	NA	NA	NA	NA
WP_000777266.1\|4367557_4367872_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_001270441.1\|4367884_4368490_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_001226442.1\|4368492_4368780_-\|holin	putative holin	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_000615248.1\|4369355_4369703_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019408

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection