CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP019164	Listeria monocytogenes strain HPB2088 chromosome, complete genome	4 crisprs	DinG,cas3,csa3,WYL,DEDDh,casR	3	10	8	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019164_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019164_1

213603-213754

Unclear

Consensus_repeat	Method
CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP019164_1

>merge|NZ_CP019164|1|213603-213754|CRISPRCasFinder
CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTCATTCGAATTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGACGCCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTC

>NZ_CP019164|1|1|213603-213754|CRISPRCasFinder
CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTC	ATTCGAATTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGACG
CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCGGAACCGAGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019164.1\|WP_012952055.1\|211028_212561_+\|zinc-metalloproteinase-Mpl	unknown	unknown	gnl\|CDD\|225768
NZ_CP019164.1\|WP_003722740.1\|219010_219634_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NZ_CP019164.1\|WP_009931069.1\|201490_202699_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NZ_CP019164.1\|WP_003722739.1\|217775_218717_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_CP019164.1\|WP_012952053.1\|214714_215584_+\|phosphatidylcholine-phospholipase-C	unknown	unknown	gnl\|CDD\|214813
NZ_CP019164.1\|WP_003722742.1\|220414_220975_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP019164.1\|WP_010989376.1\|221089_224629_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_CP019164.1\|WP_012952056.1\|207913_208867_-\|phosphatidylinositol-specific-phospholipase-C	unknown	unknown	gnl\|CDD\|176497
NZ_CP019164.1\|WP_003722735.1\|215655_215979_+\|DUF5502-family-protein	unknown	unknown	gnl\|CDD\|340321
NZ_CP019164.1\|WP_009930499.1\|217024_217699_-\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NZ_CP019164.1\|WP_003722729.1\|206929_207643_-\|listeriolysin-O-transcriptional-regulator-PrfA	unknown	unknown	gnl\|CDD\|223736
NZ_CP019164.1\|WP_003722726.1\|203811_204120_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_CP019164.1\|WP_003722723.1\|200801_201494_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP019164.1\|WP_012952052.1\|216113_216575_+\|YehR-family-lipoprotein	unknown	unknown	gnl\|CDD\|227145
NZ_CP019164.1\|WP_003722728.1\|205930_206887_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP019164.1\|WP_003722725.1\|203383_203692_+\|septation-regulator-SpoVG	unknown	unknown	gnl\|CDD\|237321
NZ_CP019164.1\|WP_003722731.1\|209108_210698_+\|cholesterol-dependent-cytolysin-listeriolysin-O	unknown	unknown	gnl\|CDD\|366559
NZ_CP019164.1\|WP_003722727.1\|204506_205880_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184643
NZ_CP019164.1\|WP_012952051.1\|219723_220308_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP019164.1\|WP_003725735.1\|216625_216958_-\|putative-heavy-metal-binding-protein	unknown	unknown	gnl\|CDD\|179228

Protein	Function_ID	Function_description	E-value
NZ_CP019164.1\|WP_012952055.1\|211028_212561_+\|zinc-metalloproteinase-Mpl	gnl\|CDD\|225768	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism].	9.42667e-139
NZ_CP019164.1\|WP_003722740.1\|219010_219634_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	2.38585e-63
NZ_CP019164.1\|WP_009931069.1\|201490_202699_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	2.47504e-62
NZ_CP019164.1\|WP_003722739.1\|217775_218717_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NZ_CP019164.1\|WP_012952053.1\|214714_215584_+\|phosphatidylcholine-phospholipase-C	gnl\|CDD\|214813	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.	7.07052e-87
NZ_CP019164.1\|WP_003722742.1\|220414_220975_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	4.98809e-109
NZ_CP019164.1\|WP_010989376.1\|221089_224629_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP019164.1\|WP_012952056.1\|207913_208867_-\|phosphatidylinositol-specific-phospholipase-C	gnl\|CDD\|176497	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated PI-analogues, PIP2 and PIP, to generate two important second messengers, InsP3 and DAG. InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. In contrast, bacterial PI-PLCs contain a single catalytic domain. Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. They participate in Ca2+-independent PI metabolism. They are characterized as phosphatidylinositol-specific phospholipase C (EC 4.6.1.13) that selectively hydrolyze PI, not PIP or PIP2. The TIM-barrel type catalytic domain in bacterial PI-PLCs is very similar to the one in eukaryotic PI-PLCs, in which the catalytic domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. The catalytic mechanism of both prokaryotic and eukaryotic PI-PLCs is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes a distinctly different type of eukaryotic PLC, glycosylphosphatidylinositol-specific phospholipase C (GPI-PLC), an integral membrane protein characterized in the protozoan parasite Trypanosoma brucei. T. brucei GPI-PLC hydrolyzes the GPI-anchor on the variant specific glycoprotein (VSG), releasing dimyristyl glycerol (DMG), which may facilitate the evasion of the protozoan to the host#s immune system. It does not require Ca2+ for its activity and is more closely related to bacterial PI-PLCs, but not mammalian PI-PLCs.	6.12448e-116
NZ_CP019164.1\|WP_003722735.1\|215655_215979_+\|DUF5502-family-protein	gnl\|CDD\|340321	pfam17606, DUF5502, Family of unknown function (DUF5502). This is a family of unknown function found in Listeria.	5.76244e-49
NZ_CP019164.1\|WP_009930499.1\|217024_217699_-\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	1.81561e-21
NZ_CP019164.1\|WP_003722729.1\|206929_207643_-\|listeriolysin-O-transcriptional-regulator-PrfA	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.59942e-12
NZ_CP019164.1\|WP_003722726.1\|203811_204120_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	5.03804e-54
NZ_CP019164.1\|WP_003722723.1\|200801_201494_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	7.27113e-121
NZ_CP019164.1\|WP_012952052.1\|216113_216575_+\|YehR-family-lipoprotein	gnl\|CDD\|227145	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown].	1.58576e-57
NZ_CP019164.1\|WP_003722728.1\|205930_206887_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP019164.1\|WP_003722725.1\|203383_203692_+\|septation-regulator-SpoVG	gnl\|CDD\|237321	PRK13259, PRK13259, septation regulator SpoVG.	2.92652e-53
NZ_CP019164.1\|WP_003722731.1\|209108_210698_+\|cholesterol-dependent-cytolysin-listeriolysin-O	gnl\|CDD\|366559	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin.	1.50399e-178
NZ_CP019164.1\|WP_003722727.1\|204506_205880_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184643	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_CP019164.1\|WP_012952051.1\|219723_220308_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	9.33654e-10
NZ_CP019164.1\|WP_003725735.1\|216625_216958_-\|putative-heavy-metal-binding-protein	gnl\|CDD\|179228	PRK01119, PRK01119, putative heavy metal-binding protein.	8.98192e-61

>NZ_CP019164.1|WP_012952055.1|211028_212561_+|zinc-metalloproteinase-Mpl
MKSKLICIIMVIAFQAHFTMTVKADSVGEEKLQNNTQAKKTPADLKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSGGYLTDNDEIKVHVTPDNKITFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYVGNPVKEKEIILNSRTKRLVYNIKLIFAEPEVASWIVQVDVETGAILKKQNMLSEVERADTHKDFQALGKGANRLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLKHNTDTSFGKVVSNKTNMFTDPEFSSAVDAHFYASEVYEYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGQEILYGDGDKKNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGEDVCVRGSRDGRIRSIKDPDKYNQAAHMKDYESLPITEEGDWGGVHYNSGIPNKAAYNTITKLGKEKTEQLYFRALKYYLTKKSQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVGVN
>NZ_CP019164.1|WP_003722731.1|209108_210698_+|cholesterol-dependent-cytolysin-listeriolysin-O
MKKIMLVFITLILVSLPIAQQTEAKDASAFNKENSISSMAPPASPPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEKKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGMTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLIAKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKEQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELTNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLKDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEVNYDPEGNEIVQHKNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNISIWGTTLYPKYSNKVDNPIE
>NZ_CP019164.1|WP_012952056.1|207913_208867_-|phosphatidylinositol-specific-phospholipase-C
MYKIYLRRTLVLVLCFILCFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN
>NZ_CP019164.1|WP_003722729.1|206929_207643_-|listeriolysin-O-transcriptional-regulator-PrfA
MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKLDEWFYLACPATWGKLN
>NZ_CP019164.1|WP_003722728.1|205930_206887_+|ribose-phosphate-diphosphokinase
MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDGEIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYARQDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDYFSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEGKVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVVTNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE
>NZ_CP019164.1|WP_003722727.1|204506_205880_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTLNVDKVVTIVGHGAEKVQEHLAGKSEFVKQDEQLGTAHAVLQAKAELAGKDGVTLVVCGDTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDATEKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRMESFEESLGVNDRIALAEASKLMQRRINENHMRNGVTLVNPESTYIDIDVKIGQDTVIEPGVMLRGKTVIGDDCVVTSGSEIVNSVIGERVHVRTSSIFESKVGDDVQIGPYAHLRPESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNKAKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPEDALGIARAKQDNKLGYAKHLNHGK
>NZ_CP019164.1|WP_003722726.1|203811_204120_+|septation-regulator-SpoVG
MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
>NZ_CP019164.1|WP_003722725.1|203383_203692_+|septation-regulator-SpoVG
MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLFVAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
>NZ_CP019164.1|WP_009931069.1|201490_202699_+|ABC-transporter-permease
MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNGVTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNATFDYKNSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGDPIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETKSAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTLTTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVISVCGGVIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASKLRPIDALRSE
>NZ_CP019164.1|WP_003722723.1|200801_201494_+|ABC-transporter-ATP-binding-protein
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA
>NZ_CP019164.1|WP_012952053.1|214714_215584_+|phosphatidylcholine-phospholipase-C
MKFKKVVLGMCLTASVLVFPVTIKANACCDEYLQTPAAPHDIDSKLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVNHMRANLMNELKKFDKQIAQGIYDADHKNPYYDTSTFLSHFYNPDRDNTYLPGFANAKITGAKYFNQSVTDYREGKFDTAFYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVAKRFCSDDVKDWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVKPTGARLRDSQQTLAGFLEFWSKKTNE
>NZ_CP019164.1|WP_003722735.1|215655_215979_+|DUF5502-family-protein
MYIKGRLIFFFVMFVIALCSVLILLIIKISVWKDEPFHLSDAKEIECLGSCEIKNTNQKIHFFSIKENLFEEKGDIAGILNEDEQKVADKSIFIVILDDEKGIANEE
>NZ_CP019164.1|WP_012952052.1|216113_216575_+|YehR-family-lipoprotein
MKMLKKGTAVLFVMIMAVMLVACGDKEETKTYTLSQKGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKAIETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK
>NZ_CP019164.1|WP_003725735.1|216625_216958_-|putative-heavy-metal-binding-protein
MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQDY
>NZ_CP019164.1|WP_009930499.1|217024_217699_-|DNA-alkylation-repair-protein
MITFDQLDTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVKLIESNNSDLIYLGLLAINPNKITTEQIEKWNIAFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEAETLLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK
>NZ_CP019164.1|WP_003722739.1|217775_218717_-|L-lactate-dehydrogenase
MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIGDAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKGIVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADYLKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAYEIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQGVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID
>NZ_CP019164.1|WP_003722740.1|219010_219634_+|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVDSLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVETDVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLPENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE
>NZ_CP019164.1|WP_012952051.1|219723_220308_+|GNAT-family-N-acetyltransferase
MLDKSVPHISVIMVNHDATNYPEFHLPAGYFFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLTKRCIFVKAPNGEIIGTAMLWDGNTFGKMESRIHWVAVLDSHGGKGIAKALLSKILGLNKSKFVYLTTQTGSYQAIYLYRKFGFEKYVGKTPENWKTVNFQEEKETAWQIIENKIAEHQA
>NZ_CP019164.1|WP_003722742.1|220414_220975_+|aminoacyl-tRNA-hydrolase
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVINYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
>NZ_CP019164.1|WP_010989376.1|221089_224629_+|transcription-repair-coupling-factor
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIVKRLEKKMMLTLNELKEQEDKQALIENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDYLPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEGNHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMRDLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADAYIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKVRALEVGIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITINVQNKPLKEWLYQVKSLAEKLRGAMKEKASTEN

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Crispr_ID: NZ_CP019164_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019164_2

380871-381027

Orphan

Consensus_repeat	Method
ATTTAGGTAAATTTTGAAAATCAGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP019164_2

>merge|NZ_CP019164|2|380871-381027|CRISPRCasFinder
ATTTAGGTAAATTTTGAAAATCAGGTGTATTGGTTAATAAATTTGCATTTAAATCTAAAAATACGAGATTTGGTAAATTTTGAAAATCAGGAATAGTTGTCAATTGGTTAGAACTTAGATCTAACGTAATAAGTAAAGGAATATTATTAAAATTAGG

>NZ_CP019164|2|2|380871-381027|CRISPRCasFinder
ATTTAGGTAAATTTTGAAAATCAGG	TGTATTGGTTAATAAATTTGCATTTAAATCTAAAAATACGA
GATTTGGTAAATTTTGAAAATCAGG	AATAGTTGTCAATTGGTTAGAACTTAGATCTAACGTAATAA
GTAAAGGAATATTATTAAAATTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019164.1\|WP_009924964.1\|379361_380378_+\|NADPH-dehydrogenase-NamA	unknown	unknown	gnl\|CDD\|184110
NZ_CP019164.1\|WP_003732491.1\|381814_383206_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP019164.1\|WP_009930948.1\|369937_371413_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP019164.1\|WP_012952008.1\|392461_393508_+\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP019164.1\|WP_012952009.1\|390675_392019_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|274109
NZ_CP019164.1\|WP_003722600.1\|383251_383848_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP019164.1\|WP_003722612.1\|369354_369852_+\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP019164.1\|WP_012952018.1\|373569_374631_+\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_CP019164.1\|WP_003722610.1\|371491_372451_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP019164.1\|WP_012952012.1\|386247_386646_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019164.1\|WP_003722604.1\|378363_379335_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NZ_CP019164.1\|WP_003722596.1\|386662_387271_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP019164.1\|WP_012952013.1\|385685_386021_-\|membrane-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP019164.1\|WP_012952019.1\|372569_373553_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NZ_CP019164.1\|WP_003732488.1\|389590_390517_+\|dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP019164.1\|WP_003722605.1\|377387_378356_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_CP019164.1\|WP_012952010.1\|387349_389512_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_CP019164.1\|WP_003722606.1\|376510_377386_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NZ_CP019164.1\|WP_012952014.1\|384004_385438_+\|polysaccharide-monooxygenase	unknown	unknown	gnl\|CDD\|225932
NZ_CP019164.1\|WP_012952017.1\|374672_376403_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092

Protein	Function_ID	Function_description	E-value
NZ_CP019164.1\|WP_009924964.1\|379361_380378_+\|NADPH-dehydrogenase-NamA	gnl\|CDD\|184110	PRK13523, PRK13523, NADPH dehydrogenase NamA; Provisional.	0
NZ_CP019164.1\|WP_003732491.1\|381814_383206_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	7.80162e-139
NZ_CP019164.1\|WP_009930948.1\|369937_371413_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.99642e-10
NZ_CP019164.1\|WP_012952008.1\|392461_393508_+\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	4.57723e-90
NZ_CP019164.1\|WP_012952009.1\|390675_392019_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|274109	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., ). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations [Transcription, Transcription factors].	0
NZ_CP019164.1\|WP_003722600.1\|383251_383848_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.30261e-143
NZ_CP019164.1\|WP_003722612.1\|369354_369852_+\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	1.81171e-27
NZ_CP019164.1\|WP_012952018.1\|373569_374631_+\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	4.99806e-149
NZ_CP019164.1\|WP_003722610.1\|371491_372451_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	3.0648e-149
NZ_CP019164.1\|WP_012952010.1\|387349_389512_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	3.79318e-131
NZ_CP019164.1\|WP_003722604.1\|378363_379335_+\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	7.47224e-145
NZ_CP019164.1\|WP_003722596.1\|386662_387271_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.34543e-18
NZ_CP019164.1\|WP_012952013.1\|385685_386021_-\|membrane-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	6.49883e-05
NZ_CP019164.1\|WP_012952019.1\|372569_373553_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	0
NZ_CP019164.1\|WP_003732488.1\|389590_390517_+\|dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	7.63415e-121
NZ_CP019164.1\|WP_003722605.1\|377387_378356_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.06416e-165
NZ_CP019164.1\|WP_003722606.1\|376510_377386_+\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.97711e-175
NZ_CP019164.1\|WP_012952014.1\|384004_385438_+\|polysaccharide-monooxygenase	gnl\|CDD\|225932	COG3397, COG3397, Uncharacterized protein conserved in bacteria [Function unknown].	1.28928e-100
NZ_CP019164.1\|WP_012952017.1\|374672_376403_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0

>NZ_CP019164.1|WP_009924964.1|379361_380378_+|NADPH-dehydrogenase-NamA
MSKLFSEYKLKDVTLKNRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVILEATAVQEVGRISEFDLGLWNDEQVPALKKLVDGLHYHGAKAGIQLAHAGRKAVLPGEIVAPSAIAFDEKSDKPVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQFLSPITNRREDNYGGPAGNRYKILSDIIKAVKEVWDGPIIVRVSATDYAHGGLQLEDHIPFAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGALGLITRGEQAEEILCNERADLIIVGRELLRNPYFAKDAAKQLGETIEAPKQYSRAWK
>NZ_CP019164.1|WP_003722604.1|378363_379335_+|DNA-binding-protein-WhiA
MSFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSSQLVIMDVQTENAAIARRMYQLLKDLYEVPIELLVRRKMKLKKNNVYIVRLKSGTRGILEDLRILEPPMTFTKSIDRGFVKKRSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEAICALMNQFDLNARTLERKNGFITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRNSVNRLVNCETANLNKTINAAVRQIDNIKYIQSTVGLEALPERLREIAALRIANEDVTLKELGEMLTTGQVSKSGINHRLRKLDQIAERLRSGETPAQVGLKISNS
>NZ_CP019164.1|WP_003722605.1|377387_378356_+|YvcK-family-protein
MKKETKPRVVVIGGGTGLPVILKGLKKKDIHLTAIVTVADDGGSSGKIREQMDVLPPGDIRNVMLALSNVDPRVVDLFQYRFAVDGDLSGHVIGNLILTALSQLNDSYVDAINVLATVLKIRGKVIPATDQPLILNAEMEDGSIVHGESLIPLQGKHINRVYIEPENVKPYPTAVEAVKEADLIVIGPGSLYTSILPNLLLTELADEITASKAPKVYITNILTQIGETDFFSDADHIKVIHEHVGKSFIDKTLINTTTVPKELLFPEDVAQVEHNAKGMEELGVEAIYQDFLSTEDGLVRHAAEKVADALLAMLPNQTNEKE
>NZ_CP019164.1|WP_003722606.1|376510_377386_+|RNase-adapter-RapZ
MASKQLKLVIITGMSGAGKTVAMQSLEDLGYFCVDNLPPSLLPKFWELMKESDKMDKIALVMDLRGREFFDSIEPALDELDNTNFITTKILFLEADDKVLVSRYKETRRHHPLEPNGSVLDGINAERELLSDLKGRSQLVINTSNMAPRELRERINNEFQTEDKDIFNVQLMSFGFKYGIPIDADLVFDVRFLPNPHYIDKMRPLTGLDEDVYEYVMKWPETQTFLDKLVDLLMFTLPFYKREGKTQLVIAIGCTGGQHRSVALTEFVGKAIQQKYETTISHRDMKRRKGR
>NZ_CP019164.1|WP_012952017.1|374672_376403_+|phospho-sugar-mutase
MNWQEEYQKWVANDKLDSTLRKQLTNMETNEKELEDSFYRNMEFGTAGMRGVLGAGTNRMNIYTIRKASLGLAQFVAENGEEAKKRGIVIAYDPRHMSREFAFESAAVLGHHGVKSYVFDALRPTPELSFAVRHLNAFGGIVITASHNPPEYNGYKIYGEDGGQMPPTGASAVIEYINAVEDIFSVEVANQELLIENGLLEVISEKVDRPYLEKLKEVIVNKELVQERGEDLKIVFTPLHGTGGILGVPALESVGFTNIVKVDEQFVNDPDFGTVKSPNPENREAFLLAIEYGKKFGGDILVGTDPDADRLGVAVRNADGEYEVLSGNQIGAIILHYLLKQKKAQNELPANAAVLKSIVTSNLGTEIAKHYGAEMIEVLTGFKFIAEQIKHFEETGKHTFEFGYEESNGYMVKPFTRDKDAIQAVLAVAEVALVSKVAGRTLLEDLDQIYDEFGYYNEDLVSLTLSGKDGSRRIKEITSSFREQLPTSMGGFVVERAEDYLRSETTWIATGKTEAIHLPTADVIKCYFEDGSWFCLRPSGTEPKIKFYFSIRGENKEESTAKLEKVKADLMQHIEA
>NZ_CP019164.1|WP_012952018.1|373569_374631_+|galactose-mutarotase
MIFIEVMKERFGEFEGETVWKWTMINDHDMRMSVLNYGAIVTSLETKDKFGDFANINLGFTNLDDYLAHSPYFGATLGPVAGRITNGQFSLDGKQFQLIQNEGSNHRHGGKFNFSKKLWDVSVEKSLDQIVMTFEYCWADGENGYPGKIDAKMTYTLNNKNEWLIDYEARSNQPTIYNPSNHIYFNLSGEAGSTVLQHQLWVNSDSFLPIDEEFLPIGEKRLAENTIFDLRAGREVAEITQSQDQQVKLVGAGLDHTFILKHENGRPDAVLFDPKSGRRLEMETKADSVLIYTANSLDGSFEIDERAVPKYAGITMETQGLVDAINHDGFGDIVLRPEKPFTSRTAFRFTVES
>NZ_CP019164.1|WP_012952019.1|372569_373553_+|UDP-glucose-4-epimerase-GalE
MGIAVLGGAGYIGSHAVDELITRGYEVVVIDNLRTGHRESIHKKAKFYEGDIRDKAFLSSVFEKEKVDGVIHFAASSLVGESMEVPLDYLNNNVYGTQIVLEVMEEFDVKHIVFSSSAATYGEPERVPITEDMPTNPESTYGETKLIMEKMMKWCDKAYGMKFVALRYFNVAGAKADGSIGEDHKPESHLVPIILQVALGQREKLAIYGDDYNTPDGTCIRDYVQVEDLIDAHIRALEYLKNGGESNIFNLGSSNGFSVKEMLEAARTVTGKEIPAEVVPRRAGDPGTLIASSDKASEILGWEPTYTDVKDIIATAWKWHVSHPNGY
>NZ_CP019164.1|WP_003722610.1|371491_372451_+|thioredoxin-disulfide-reductase
MASEEKIYDVIIIGAGPAGMTAALYTSRADLDTLMIERGVPGGQMVNTAEVENYPGFDSILGPDLSDKMLSGAKQFGAEYAYGDIKEVVDGKEFKTVTAGSKTYKARAIIIATGAEHRKLGAAGEEELSGRGVSYCAVCDGAFFKNRELIVVGGGDSAVEEGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGDGKKVTGAKLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLNLGITDDEGYIVTDEEMRTNLPGIFAAGDVRAKSLRQIVTATGDGGLAGQNAQKYVEELKESLEAEAAK
>NZ_CP019164.1|WP_009930948.1|369937_371413_+|hypothetical-protein
MEKDKKIPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRASELEPGEAVILCQLAICYTEIGQFHKSNQLLREVLEQRNGNMEYCYYFIANNFAYMKDYRRALQYANRYLDSSTDGEYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKEINRYLAEEDSASACDILRKVIDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRNPGNLLGICDLFIYHFYKGNRKEADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEADDLLEQVADLEVTERSKYYYFRAKSSYYLGDVEGAKMFWHSFLECDLYEDVRFPWEQEPDLTNDTRLVLEMLQEEDDLTHMLGVYALTISGNRPELVLFHPLLDMSDWSYMEHLMFTNFDYFPDGAIEQNGYLIAKAMIILKENGILLNEEYMALYKQMFSLVLIDAGKDLILGRYTIETVASAIAKLFLPHLKLQLVEEFECSKCARDIERVLSR
>NZ_CP019164.1|WP_003722612.1|369354_369852_+|acyltransferase
MRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLSEYRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
>NZ_CP019164.1|WP_003732491.1|381814_383206_+|amino-acid-permease
MTKVNSFFRKKSFHNPATDKHHLNKSLGAFDLTMLGVGAVVGGGIFILPGQVASVIAGPGIIISFIIAGIACCLAALCYSEFASKLPVAGSAYTYSYHVFGEGVAWILGWSLILEYGLAVAAIASGWSSYMKSLLAGFDLHIPTAISSAYDPSAGTYFDLLAFVVVMVIGILLSFGIRESTRVNNIMVLVKIAVVVLFILVGAFYVKPDNWTPFLPFGVQGVITGASTVFFAYIGFDAVSSAAEEVKNPQKNMPIGIISSLAVCTLLYILLSAVLTGVVPYTDLVDVSAPVAFALQAINQNWIAGLLSVGAIVGMTTVVLVMSYGGTRLLFAMGRDGLLPKSFSKISKNDTPVRNTMIFATVMGLIASTVPMADLAQLINIGTLFAFAMVSIGIFFLRRNPDLNQKGFKTPFYPVVPALSFLLCVYLMINLSKTTWIAFGIWFVIGILVYTFYGRKHSALRIK
>NZ_CP019164.1|WP_003722600.1|383251_383848_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKG
>NZ_CP019164.1|WP_012952014.1|384004_385438_+|polysaccharide-monooxygenase
MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKGINVGVGSAQYEPQSVEAPKGFPISGPADGSIAGGGKYSLLDEQSASRWAKVDIEPGPLTVEWTLTAPHKTSSWQYFITKKGWDPNKPLTRSSLEPLATIEADGSVPNALAKQEINIPNDRSGYYVILGVWNIADTGNAFYQVIDANIINSDITPVADTEAPTKPTNLAATTTKTVSLAWNASTDNVGIKGYEILRDGVVIGESQTASYEDTTVESNTAYTYTVRAKDFAGNKSTLSNSINVTTKEVPAVDNEAPTAPKSLMSHGQTDTTIALCWQASTDNVEVKNYEIYRNNTKIATSTKTMFEDTKLASNTSYNYKVYAVDTSGNRSLVSNEITIKTKTLDPLNTWKSDQIYNAGDQVYYNGVAYTAKWWTKGNTPDTSDVWQTASTDIQTWNVQKAYNGGDKVTYNGKTYQAKWWVRGEKPDSSSIWTLLN
>NZ_CP019164.1|WP_012952013.1|385685_386021_-|membrane-protein
MVEQNYMETRNGRTSFFDGGLLQYIGWTILGTLVTLCTFGICYPWALCMVYGWKINHTVIEGRRLKFQGSAVSLFGHWVKWLLLTIITIGIYGFWVFIKLEDWKVKNTIFN
>NZ_CP019164.1|WP_012952012.1|386247_386646_+|hypothetical-protein
MAASLKDRLEEEVKTYSADNNLTVQTIDFLYAGPHMRGRHSLVLAFTEAGIFTFVFKLSDAEMHFLDGKTVQQIALEKKKLVYRLYIRAVTEEGELEEGKYLVSKRVLGRKWHKETLEKLINKNLPLLTATK
>NZ_CP019164.1|WP_003722596.1|386662_387271_+|TetR/AcrR-family-transcriptional-regulator
MEKKRTRAEELGITRRKILDTARDLFMEKGYRAVSTREIAKIANITQPALYHHFEDKESLYIEVVRELTQNIQVEMHPIMQTNKAKEEQLHDMLIMLIEEHPTNILLMIHDILNEMKPENQFLLYKLWQKTYLEPFQQFFERLENAGELRNGISAETAARYCLSTISPLFSGKGSFAQKQTTTEQIDELINLMMFGICKKEV
>NZ_CP019164.1|WP_012952010.1|387349_389512_+|MMPL-family-transporter
MKDGFLSKIASGVGGKKGRFITLGIWIIAIIILQFFFPKAADYKDDAAKDLPNSEPSVVAQKLIDDKFAGTDGVPALITWYRSTGLTNEDLVNIQKYSKELTENPVDYQKMAVPYDKMPPVVLKQQVSKDGTTFIQTVIMKDSATSDQLTESFKQLESAAKTTIGEDPFAQKVSADDTLVARTTGPAGISVDASGLFKDADVSLLIGTVLLVLVFLLVIYRSPILALIPLIAVGFAYLVITPILGLLAKEGIITYGSQGLSIMTVLLFGAGTDYCLFLISRFRSHLHTEKNRFQAFKEAFSGTAGAIALSGLTVMAALLLLLAAEYGSFHNFAVPFSLAIFIMMISSLTLVPALLGIFGRVSFWPFVPRTVEMEETRAKKKGKTPKHHKENRFWHKIGEMSAKHPVRILIITLIILIGCGIFTTQVKYTYDTLSTFPEDMPSREGFTLISDHFGAGMLAPMEVVVNSKESMKSSLENVDGVASVTGPERSKGYQKYTLILKDNPYSNEAMDVVPKVRAAADKGNDVYIAGQTATQYDDRAVTEHDEKVIIPLVIALIAILLLCYLRSITAMLYLVATVLLSFVGALGLGWVIIHYAMGVEAISGLIPLYAFVFIVALGEDYNIFMISSIWKNSKKMPIRKAITEGVGQTGGVITSAGLILAGTFGVLTTLPIQLLVQFGLITAIGVLLDTFIVRPFLVPSITVLLGKWAFWPGKQHKMTK
>NZ_CP019164.1|WP_003732488.1|389590_390517_+|dipeptidase
MRVIDTHCDALYKLQAGKGKYTFQDAEELDVNFERLIEAKMLLQGFAIFLDEDIPVEHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCDLENLPEDKIGAMLTLEGIEPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADGIMEERGAGLTRFGKDIIHLLNERKVFTDVSHLSVKAFWETLEQAEFVIASHSSAKAICAHPRNLDDEQIKAMIEHDAMIHVIFHPLFTTNDGVADIEDVIRHIDHICELGGMKNIGFGSDFDGIPDHVKGLEHAGKYQNFLETLGKHYTKEEVEGFASRNFLNHLPK
>NZ_CP019164.1|WP_012952009.1|390675_392019_+|RNA-polymerase-factor-sigma-54
MRLESNFVQKQQQKQSQKLNMTQQLSQSIAMLQFATADLVAFLEDKALENPLIEVIPGSDFATDFSYSSRKSAGSSDDTDWLEQIADNKMTLADALKEQLHLMDVTQTQKIIVLYLIESLNDNGYLQIDLKDVSAALLMDDSSVLEGLEILQSMEPAGVGARDARECILLQIERSPDAPYIAYDVIQKFFTEFAEKKWKKIASEMDVSLQDIQEVSDYIQTLNPKPGSEFESERVQYVVPDLILLQHEDEFAVSLAKQFLPQVRFQEAYYETMRATEEKDVAQFLREKAGEFDWIKKGIEQRESTLQRVGEAIVSHQKAYFLDNSAHLQPLTLKEVAEELGVHESTVSRAVNGKYMETTNGVYELKRFFASGLQKKSSENENIGDISSTTIKMLVQEFVAAEDKLKPLSDQKIVDMLAEKEIQVSRRAIAKYRLELNIPSSSKRKRF
>NZ_CP019164.1|WP_012952008.1|392461_393508_+|sugar-binding-transcriptional-regulator
MSDLINIQKKLLPDVLLIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLESVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLGKIIHRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK

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Crispr_ID: NZ_CP019164_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019164_3

2464497-2464974

Orphan

I-A

Consensus_repeat	Method
ATTTACATTTCACAATAAGTAACTAAAA	PILER-CR
ATTTACATTTCACAATAAGTAACTAAAA	CRISPRCasFinder
ATTTACATTTCACAATAAGTAACTAAAAC	CRT

7 spacers

The CRISPR arrays of NZ_CP019164_3

>merge|NZ_CP019164|3|2464497-2464974|PILER-CR,CRISPRCasFinder,CRT
ATTTACATTTCACAATAAGTAACTAAAACGAAATTGTAAAATCTATATCCGTTGATTCAACAAAATTTACATTTCACAATAAGTAACTAAAACTTAATTTGATAGTCATAATTTATTTCCTCCTATTTTATTTACATTTCACAATAAGTAACTAAAATATAGAAAGGAGTTGATACAGTGAAGGATGTTTTAGATTTACATTTCACAATAAGTAACTAAAACTTATAAACGACATTTTAGAAGCAGGAGTAGAAAAATTTACATTTCACAATAAGTAACTAAAACTTGTAACCCATCGCTGTCCCTTTGACAAAAATCGCATTTACATTTCACAATAAGTAACTAAAACGCTACATGCTTGATGTGCTTTACACAAAAGAGAGCAATTTACATTTCACAATAAGTAACTAAAACGCCATTTACAATCACCCTTCCGGAGTTTGATCTGTATTTACATTTCACAATAAGTAACTAAAAC

>NZ_CP019164|3|1|2464497-2464973|PILER-CR
ATTTACATTTCACAATAAGTAACTAAAA	CGAAATTGTAAAATCTATATCCGTTGATTCAACAAA
ATTTACATTTCACAATAAGTAACTAAAA	CTTAATTTGATAGTCATAATTTATTTCCTCCTATTTT
ATTTACATTTCACAATAAGTAACTAAAA	TATAGAAAGGAGTTGATACAGTGAAGGATGTTTTAG
ATTTACATTTCACAATAAGTAACTAAAA	CTTATAAACGACATTTTAGAAGCAGGAGTAGAAAA
ATTTACATTTCACAATAAGTAACTAAAA	CTTGTAACCCATCGCTGTCCCTTTGACAAAAATCGC
ATTTACATTTCACAATAAGTAACTAAAA	CGCTACATGCTTGATGTGCTTTACACAAAAGAGAGCA
ATTTACATTTCACAATAAGTAACTAAAA	CGCCATTTACAATCACCCTTCCGGAGTTTGATCTGT
ATTTACATTTCACAATAAGTAACTAAAA

>NZ_CP019164|3|3|2464497-2464973|CRISPRCasFinder
ATTTACATTTCACAATAAGTAACTAAAA	CGAAATTGTAAAATCTATATCCGTTGATTCAACAAA
ATTTACATTTCACAATAAGTAACTAAAA	CTTAATTTGATAGTCATAATTTATTTCCTCCTATTTT
ATTTACATTTCACAATAAGTAACTAAAA	TATAGAAAGGAGTTGATACAGTGAAGGATGTTTTAG
ATTTACATTTCACAATAAGTAACTAAAA	CTTATAAACGACATTTTAGAAGCAGGAGTAGAAAA
ATTTACATTTCACAATAAGTAACTAAAA	CTTGTAACCCATCGCTGTCCCTTTGACAAAAATCGC
ATTTACATTTCACAATAAGTAACTAAAA	CGCTACATGCTTGATGTGCTTTACACAAAAGAGAGCA
ATTTACATTTCACAATAAGTAACTAAAA	CGCCATTTACAATCACCCTTCCGGAGTTTGATCTGT
ATTTACATTTCACAATAAGTAACTAAAA

>NZ_CP019164|3|1|2464497-2464974|CRT
ATTTACATTTCACAATAAGTAACTAAAAC	GAAATTGTAAAATCTATATCCGTTGATTCAACAAA
ATTTACATTTCACAATAAGTAACTAAAAC	TTAATTTGATAGTCATAATTTATTTCCTCCTATTTT
ATTTACATTTCACAATAAGTAACTAAAAT	ATAGAAAGGAGTTGATACAGTGAAGGATGTTTTAG
ATTTACATTTCACAATAAGTAACTAAAAC	TTATAAACGACATTTTAGAAGCAGGAGTAGAAAA
ATTTACATTTCACAATAAGTAACTAAAAC	TTGTAACCCATCGCTGTCCCTTTGACAAAAATCGC
ATTTACATTTCACAATAAGTAACTAAAAC	GCTACATGCTTGATGTGCTTTACACAAAAGAGAGCA
ATTTACATTTCACAATAAGTAACTAAAAC	GCCATTTACAATCACCCTTCCGGAGTTTGATCTGT
ATTTACATTTCACAATAAGTAACTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019164.1\|WP_003721297.1\|2462739_2463420_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP019164.1\|WP_003721294.1\|2466286_2467558_-\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP019164.1\|WP_003733191.1\|2470000_2470468_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP019164.1\|WP_003721303.1\|2456728_2457544_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP019164.1\|WP_012951245.1\|2468924_2469575_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP019164.1\|WP_012951246.1\|2467881_2468928_-\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CP019164.1\|WP_012951244.1\|2470495_2471098_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_CP019164.1\|WP_003721301.1\|2459141_2459573_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP019164.1\|WP_003721293.1\|2467572_2467866_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CP019164.1\|WP_012951243.1\|2473270_2473921_-\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_CP019164.1\|WP_014601718.1\|2462355_2462715_+\|Lin0512-family-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CP019164.1\|WP_003733187.1\|2461890_2462349_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP019164.1\|WP_003733193.1\|2471101_2473162_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP019164.1\|WP_003727295.1\|2454517_2455933_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP019164.1\|WP_012951247.1\|2463526_2464105_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019164.1\|WP_012951252.1\|2456079_2456448_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282
NZ_CP019164.1\|WP_012951250.1\|2459673_2461509_-\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_CP019164.1\|WP_003733190.1\|2465211_2466147_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP019164.1\|WP_012951251.1\|2457664_2459095_+\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CP019164.1\|WP_003721290.1\|2469585_2469984_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP019164.1\|WP_003721297.1\|2462739_2463420_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_CP019164.1\|WP_003721294.1\|2466286_2467558_-\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_CP019164.1\|WP_003733191.1\|2470000_2470468_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
NZ_CP019164.1\|WP_003721303.1\|2456728_2457544_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP019164.1\|WP_012951245.1\|2468924_2469575_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	8.25352e-108
NZ_CP019164.1\|WP_012951246.1\|2467881_2468928_-\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_CP019164.1\|WP_012951244.1\|2470495_2471098_-\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	5.57544e-75
NZ_CP019164.1\|WP_014601718.1\|2462355_2462715_+\|Lin0512-family-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	4.36834e-66
NZ_CP019164.1\|WP_003721293.1\|2467572_2467866_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_CP019164.1\|WP_012951243.1\|2473270_2473921_-\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.0547e-61
NZ_CP019164.1\|WP_003721301.1\|2459141_2459573_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_CP019164.1\|WP_003733187.1\|2461890_2462349_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	1.03599e-12
NZ_CP019164.1\|WP_003733193.1\|2471101_2473162_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	3.95572e-80
NZ_CP019164.1\|WP_003727295.1\|2454517_2455933_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.97112e-80
NZ_CP019164.1\|WP_012951252.1\|2456079_2456448_+\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	8.73125e-42
NZ_CP019164.1\|WP_012951250.1\|2459673_2461509_-\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	8.58129e-120
NZ_CP019164.1\|WP_003733190.1\|2465211_2466147_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.26262e-153
NZ_CP019164.1\|WP_012951251.1\|2457664_2459095_+\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	7.01384e-100

>NZ_CP019164.1|WP_012951247.1|2463526_2464105_-|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTNTIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_CP019164.1|WP_003721297.1|2462739_2463420_-|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_CP019164.1|WP_014601718.1|2462355_2462715_+|Lin0512-family-protein
MEQILFIQTGFGVDVHGQNITNAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_CP019164.1|WP_003733187.1|2461890_2462349_+|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTAAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_CP019164.1|WP_012951250.1|2459673_2461509_-|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSISGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPEIKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_CP019164.1|WP_003721301.1|2459141_2459573_-|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_CP019164.1|WP_012951251.1|2457664_2459095_+|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASISDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNADAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_CP019164.1|WP_003721303.1|2456728_2457544_+|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP019164.1|WP_012951252.1|2456079_2456448_+|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGMAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVAVLLV
>NZ_CP019164.1|WP_003727295.1|2454517_2455933_-|multidrug-efflux-MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_CP019164.1|WP_003733190.1|2465211_2466147_-|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CP019164.1|WP_003721294.1|2466286_2467558_-|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_CP019164.1|WP_003721293.1|2467572_2467866_-|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_CP019164.1|WP_012951246.1|2467881_2468928_-|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKILFFPE
>NZ_CP019164.1|WP_012951245.1|2468924_2469575_-|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNAELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_CP019164.1|WP_003721290.1|2469585_2469984_-|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_CP019164.1|WP_003733191.1|2470000_2470468_-|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_CP019164.1|WP_012951244.1|2470495_2471098_-|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVYSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_CP019164.1|WP_003733193.1|2471101_2473162_-|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_CP019164.1|WP_012951243.1|2473270_2473921_-|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALVGADFVAPYVNRMSAANIDPFKEIRQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYLQMTNKVLAVEAIRVFNEDAVLYEK

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Crispr_ID: NZ_CP019164_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019164_4

2841928-2842036

Orphan

Consensus_repeat	Method
AGAACTTTCAAAATGTACTTTATTTTGATTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019164_4

>merge|NZ_CP019164|4|2841928-2842036|CRISPRCasFinder
AGAACTTTCAAAATGTACTTTATTTTGATTTAGTTCTTCAATATAAATCTGAGCGCAGCGATGATTTAATCCTTCCCAGAACTTTCAAAATGTACTTTATTTTGATTTA

>NZ_CP019164|4|4|2841928-2842036|CRISPRCasFinder
AGAACTTTCAAAATGTACTTTATTTTGATTTA	GTTCTTCAATATAAATCTGAGCGCAGCGATGATTTAATCCTTCCC
AGAACTTTCAAAATGTACTTTATTTTGATTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019164.1\|WP_009931159.1\|2837930_2838773_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|223729
NZ_CP019164.1\|WP_003722062.1\|2839078_2839675_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP019164.1\|WP_012951102.1\|2834920_2835517_+\|dihydroxyacetone-kinase-subunit-L	unknown	unknown	gnl\|CDD\|274099
NZ_CP019164.1\|WP_003728590.1\|2842827_2843049_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019164.1\|WP_009925039.1\|2845717_2846359_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019164.1\|WP_012951100.1\|2836970_2837810_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP019164.1\|WP_003722065.1\|2842160_2842625_-\|DUF3284-domain-containing-protein	unknown	unknown	gnl\|CDD\|378692
NZ_CP019164.1\|WP_003732087.1\|2847056_2848571_-\|gluconokinase	unknown	unknown	gnl\|CDD\|212659
NZ_CP019164.1\|WP_003728591.1\|2843183_2844548_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP019164.1\|WP_003722074.1\|2849667_2850615_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP019164.1\|WP_012951101.1\|2836000_2836852_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP019164.1\|WP_003722073.1\|2848686_2849625_-\|GW-domain-containing-glycosaminoglycan-binding-protein	unknown	unknown	gnl\|CDD\|226309
NZ_CP019164.1\|WP_003722063.1\|2839783_2840101_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP019164.1\|WP_003732089.1\|2850755_2852495_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP019164.1\|WP_009931588.1\|2844990_2845146_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP019164.1\|WP_003728589.1\|2842642_2842825_-\|DUF3188-domain-containing-protein	unknown	unknown	gnl\|CDD\|371501
NZ_CP019164.1\|WP_003732079.1\|2833909_2834899_+\|dihydroxyacetone-kinase-subunit-DhaK	unknown	unknown	gnl\|CDD\|237724
NZ_CP019164.1\|WP_003722061.1\|2838818_2839064_-\|YaaL-family-protein	unknown	unknown	gnl\|CDD\|378478
NZ_CP019164.1\|WP_003732084.1\|2840130_2841870_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_CP019164.1\|WP_009913205.1\|2835520_2835895_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	unknown	unknown	gnl\|CDD\|184702

Protein	Function_ID	Function_description	E-value
NZ_CP019164.1\|WP_009931159.1\|2837930_2838773_+\|aldo/keto-reductase	gnl\|CDD\|223729	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only].	6.97706e-130
NZ_CP019164.1\|WP_003722062.1\|2839078_2839675_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.77001e-132
NZ_CP019164.1\|WP_012951102.1\|2834920_2835517_+\|dihydroxyacetone-kinase-subunit-L	gnl\|CDD\|274099	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.	1.69543e-82
NZ_CP019164.1\|WP_012951100.1\|2836970_2837810_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.59066e-84
NZ_CP019164.1\|WP_003722065.1\|2842160_2842625_-\|DUF3284-domain-containing-protein	gnl\|CDD\|378692	pfam11687, DUF3284, Domain of unknown function (DUF3284). This family of proteins with unknown function appears to be restricted to Firmicutes.	5.35099e-31
NZ_CP019164.1\|WP_003728591.1\|2843183_2844548_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	1.91509e-162
NZ_CP019164.1\|WP_003722074.1\|2849667_2850615_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.13667e-05
NZ_CP019164.1\|WP_012951101.1\|2836000_2836852_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.97147e-62
NZ_CP019164.1\|WP_003722073.1\|2848686_2849625_-\|GW-domain-containing-glycosaminoglycan-binding-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	6.39605e-99
NZ_CP019164.1\|WP_003722063.1\|2839783_2840101_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.53269e-41
NZ_CP019164.1\|WP_003732089.1\|2850755_2852495_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP019164.1\|WP_003732087.1\|2847056_2848571_-\|gluconokinase	gnl\|CDD\|212659	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain.	0
NZ_CP019164.1\|WP_003728589.1\|2842642_2842825_-\|DUF3188-domain-containing-protein	gnl\|CDD\|371501	pfam11384, DUF3188, Protein of unknown function (DUF3188). This bacterial family of proteins has no known function.	4.70726e-11
NZ_CP019164.1\|WP_003732079.1\|2833909_2834899_+\|dihydroxyacetone-kinase-subunit-DhaK	gnl\|CDD\|237724	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional.	0
NZ_CP019164.1\|WP_003722061.1\|2838818_2839064_-\|YaaL-family-protein	gnl\|CDD\|378478	pfam10704, DUF2508, Protein of unknown function (DUF2508). This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.	2.68189e-15
NZ_CP019164.1\|WP_003732084.1\|2840130_2841870_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP019164.1\|WP_009913205.1\|2835520_2835895_+\|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM	gnl\|CDD\|184702	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional.	2.28713e-49

>NZ_CP019164.1|WP_003732084.1|2840130_2841870_-|DNA-polymerase-III-subunit-gamma/tau
MAYQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSVAGGGNVPADAASGSDVSDLKRQMEQMHQEIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQLIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETITSSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDADAEDGANPEAKKPAEDPFVAEAAKLVGEDLLEIKD
>NZ_CP019164.1|WP_003722063.1|2839783_2840101_-|YbaB/EbfC-family-nucleoid-associated-protein
MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTVKATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNIPGM
>NZ_CP019164.1|WP_003722062.1|2839078_2839675_-|recombination-protein-RecR
MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFAKALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHGLYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLLKPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV
>NZ_CP019164.1|WP_003722061.1|2838818_2839064_-|YaaL-family-protein
MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQENWHKQKVLMRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK
>NZ_CP019164.1|WP_009931159.1|2837930_2838773_+|aldo/keto-reductase
MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDQIDLYLVHWPKQDTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPVVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI
>NZ_CP019164.1|WP_012951100.1|2836970_2837810_+|Cof-type-HAD-IIB-family-hydrolase
MTTQAIILDIDGTLLNDDKQISPETKKALITAQENGVKLILASGRPTTGMHVYAEQLEMEKHHGLLVSYNGAKVVDCATNEELFNQALTVEEGKAVLEHMKQFEVKVMIDKEDYMYTNDVYDCYVPYRGEEINIIQYESRGGNFKLCEKDDLAAFLDYRLSKILTAGDPAYMQKNYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMGIHAENIVAFGDGHNDITMVEYAGTGIAMQNAVVELKAAASSVTLSNNEDGIAHVLNSLIPS
>NZ_CP019164.1|WP_012951101.1|2836000_2836852_+|MurR/RpiR-family-transcriptional-regulator
MNILIKIRELTNLTNSEKELANYILVNPKKTLQFKPKELAAAAFVSAATIYRLINKLGLNGIGELKIEIASSLRETNAEKDINYDYPILESDTPYQIMTNLNQIYKGTIDETLNNADPEELVKIGEKLINAKTIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNPLVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQKMNTELE
>NZ_CP019164.1|WP_009913205.1|2835520_2835895_+|PTS-dependent-dihydroxyacetone-kinase-phosphotransferase-subunit-DhaM
MTKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRIGTSFDAVNEAIESNEADKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATAAQVQMDEKPEVIAANLKTIEIK
>NZ_CP019164.1|WP_012951102.1|2834920_2835517_+|dihydroxyacetone-kinase-subunit-L
MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMARGLSELKKVFTEKEPADLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVDADTIDAVGLTKVIEAGLEGIEKRGKSHAGEKTMIDVWEPVVHALHQEDLTDDVVDAALQKTKDLKATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVS
>NZ_CP019164.1|WP_003732079.1|2833909_2834899_+|dihydroxyacetone-kinase-subunit-DhaK
MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPGKVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLIVKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKIIGAAAEAGASLDELKALGEKVIASVKTLGVALSPCTVPEVGHPGFELGDDEIELGIGIHGEPGFTREKIMPSASLAKQLYERISNESKLLAGDKVVVLVNGMGATPLMEQYVFANDVHELLKNAGVQVAKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW
>NZ_CP019164.1|WP_003722065.1|2842160_2842625_-|DUF3284-domain-containing-protein
MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKYQRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIETEKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ
>NZ_CP019164.1|WP_003728589.1|2842642_2842825_-|DUF3188-domain-containing-protein
MKIVNALFIISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIGCVFIVLKIRKDKKEKN
>NZ_CP019164.1|WP_003728590.1|2842827_2843049_-|hypothetical-protein
MIILNCPMKRDYITELLETHDKDGVTFKKIAEQGMKLTFETNIEDEEKAAKIAKETIKATEIGSVLYFQVSVG
>NZ_CP019164.1|WP_003728591.1|2843183_2844548_-|PTS-sugar-transporter-subunit-IIC
MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSIAVLLNAFFRDFPTDWGWTGFVEAMQPLIDINGYVYNGTLAIVSIIFAFSLGYNLSKAYEVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDVATLPKEFAGIYGFFSLSQVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVVGIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVLAPVLESLWGTAQLQNISAAQDGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSKRADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGIVGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEEEMKA
>NZ_CP019164.1|WP_009931588.1|2844990_2845146_+|hypothetical-protein
MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPATVEEKKKQDAEKKTDDN
>NZ_CP019164.1|WP_009925039.1|2845717_2846359_-|hypothetical-protein
MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEVAYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNIDYLFRLAYKQYEINEPSTNKYYSGLIDYSVADNAYVTQKDVYITNNESYATYDFFDKNGKKIYTYNPEETSNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVNVRIDEDKEMVIFSIK
>NZ_CP019164.1|WP_003732087.1|2847056_2848571_-|gluconokinase
MTSKPYIMGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETGKAEESPTEIFDAVLTSIQAVMKNINTEELAGISFSSAMHSLIMVGSNGELLTECITWADGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIKSYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDFLPKVVPETYQLAGVKKEYAELMGIPENLPFIIGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTDQFQIDSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVPPGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEAVSAPDDIIYVTGGISAHDAWCKLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKDLNLKHTLPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS
>NZ_CP019164.1|WP_003722073.1|2848686_2849625_-|GW-domain-containing-glycosaminoglycan-binding-protein
MKKLLSGLIVVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVNQSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGWIDSRAFTNIGKPTIADTVPALWNSKKAIITTKPKSTTATTYFFQKNSAGNWYEVRHFTSHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDKAYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGCVAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN
>NZ_CP019164.1|WP_003722074.1|2849667_2850615_-|LPXTG-cell-wall-anchor-domain-containing-protein
MKKFHGLILTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTDTTENIITEEKTEPAEPTKDTTVTPPQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTATLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDNEDGKTTAVKLNYLVKEKTAQLTITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQITAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATTKPTDVTKVTKDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK
>NZ_CP019164.1|WP_003732089.1|2850755_2852495_-|thiol-reductant-ABC-exporter-subunit-CydC
MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLISKSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEPQALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFAALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKTFISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTMIAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPALPTFEEETKEIERINTENVVLKAENLTFAYDEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLPTAGKVTMNDVEVEKLRPQIPELTSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAKKVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDPITERDLLATIFETLADKSLIWVTHHLVGAEKMDRVLFLEEGKTLMEGPHAELMAEEPRYKRLYQLDRPIEL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP019164_3	3.8\|2464526\|35\|NZ_CP019164\|CRT	2464526-2464560	35	NZ_CP019164.1	553675-553709	0	1.0
NZ_CP019164_3	3.14\|2464911\|35\|NZ_CP019164\|CRT	2464911-2464945	35	NZ_CP019164.1	1719750-1719784	0	1.0
NZ_CP019164_3	3.9\|2464590\|36\|NZ_CP019164\|CRT	2464590-2464625	36	NZ_CP019164.1	1720897-1720932	1	0.972

1. spacer 3.8|2464526|35|NZ_CP019164|CRT matches to position: 553675-553709, mismatch: 0, identity: 1.0

gaaattgtaaaatctatatccgttgattcaacaaa	CRISPR spacer
gaaattgtaaaatctatatccgttgattcaacaaa	Protospacer
***********************************

2. spacer 3.14|2464911|35|NZ_CP019164|CRT matches to position: 1719750-1719784, mismatch: 0, identity: 1.0

gccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
gccatttacaatcacccttccggagtttgatctgt	Protospacer
***********************************

3. spacer 3.9|2464590|36|NZ_CP019164|CRT matches to position: 1720897-1720932, mismatch: 1, identity: 0.972

ttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
ttaatttgatagtcataatctatttcctcctatttt	Protospacer
*******************.****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019164_3	3.8\|2464526\|35\|NZ_CP019164\|CRT	2464526-2464560	35	DQ003642	Listeria phage A006, complete genome	15712-15746	0	1.0
NZ_CP019164_3	3.9\|2464590\|36\|NZ_CP019164\|CRT	2464590-2464625	36	MT500540	Listeria phage LP-HM00113468, complete genome	683-718	0	1.0
NZ_CP019164_3	3.9\|2464590\|36\|NZ_CP019164\|CRT	2464590-2464625	36	NC_009812	Listeria phage B025, complete genome	3896-3931	0	1.0
NZ_CP019164_3	3.9\|2464590\|36\|NZ_CP019164\|CRT	2464590-2464625	36	KJ094023	Listeria phage LP-101, complete genome	3936-3971	0	1.0
NZ_CP019164_3	3.14\|2464911\|35\|NZ_CP019164\|CRT	2464911-2464945	35	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	214611-214645	0	1.0
NZ_CP019164_3	3.14\|2464911\|35\|NZ_CP019164\|CRT	2464911-2464945	35	MT500540	Listeria phage LP-HM00113468, complete genome	39834-39868	0	1.0
NZ_CP019164_3	3.14\|2464911\|35\|NZ_CP019164\|CRT	2464911-2464945	35	KJ094023	Listeria phage LP-101, complete genome	5084-5118	0	1.0
NZ_CP019164_3	3.1\|2464525\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464525-2464560	36	DQ003642	Listeria phage A006, complete genome	15711-15746	1	0.972
NZ_CP019164_3	3.2\|2464589\|37\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464589-2464625	37	NC_009812	Listeria phage B025, complete genome	3896-3932	1	0.973
NZ_CP019164_3	3.2\|2464589\|37\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464589-2464625	37	KJ094023	Listeria phage LP-101, complete genome	3936-3972	1	0.973
NZ_CP019164_3	3.2\|2464589\|37\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464589-2464625	37	MT500540	Listeria phage LP-HM00113468, complete genome	682-718	1	0.973
NZ_CP019164_3	3.3\|2464654\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464654-2464689	36	NC_021539	Listeria phage LP-030-2, complete genome	18926-18961	1	0.972
NZ_CP019164_3	3.3\|2464654\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464654-2464689	36	KJ094023	Listeria phage LP-101, complete genome	22882-22917	1	0.972
NZ_CP019164_3	3.5\|2464781\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464781-2464816	36	MH341453	Listeria phage PSU-VKH-LP041, complete genome	10139-10174	1	0.972
NZ_CP019164_3	3.7\|2464910\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464910-2464945	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	214611-214646	1	0.972
NZ_CP019164_3	3.7\|2464910\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464910-2464945	36	MT500540	Listeria phage LP-HM00113468, complete genome	39833-39868	1	0.972
NZ_CP019164_3	3.7\|2464910\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464910-2464945	36	KJ094023	Listeria phage LP-101, complete genome	5084-5119	1	0.972
NZ_CP019164_3	3.9\|2464590\|36\|NZ_CP019164\|CRT	2464590-2464625	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213463-213498	1	0.972
NZ_CP019164_3	3.10\|2464655\|35\|NZ_CP019164\|CRT	2464655-2464689	35	NC_021539	Listeria phage LP-030-2, complete genome	18926-18960	1	0.971
NZ_CP019164_3	3.10\|2464655\|35\|NZ_CP019164\|CRT	2464655-2464689	35	KJ094023	Listeria phage LP-101, complete genome	22882-22916	1	0.971
NZ_CP019164_3	3.12\|2464782\|35\|NZ_CP019164\|CRT	2464782-2464816	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	10139-10173	1	0.971
NZ_CP019164_3	3.2\|2464589\|37\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464589-2464625	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	213463-213499	2	0.946
NZ_CP019164_3	3.3\|2464654\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464654-2464689	36	NC_009812	Listeria phage B025, complete genome	23381-23416	2	0.944
NZ_CP019164_3	3.5\|2464781\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464781-2464816	36	NC_009813	Listeria phage B054, complete genome	10139-10174	2	0.944
NZ_CP019164_3	3.10\|2464655\|35\|NZ_CP019164\|CRT	2464655-2464689	35	NC_009812	Listeria phage B025, complete genome	23381-23415	2	0.943
NZ_CP019164_3	3.12\|2464782\|35\|NZ_CP019164\|CRT	2464782-2464816	35	NC_009813	Listeria phage B054, complete genome	10139-10173	2	0.943
NZ_CP019164_3	3.14\|2464911\|35\|NZ_CP019164\|CRT	2464911-2464945	35	NC_009812	Listeria phage B025, complete genome	5044-5078	2	0.943
NZ_CP019164_3	3.7\|2464910\|36\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464910-2464945	36	NC_009812	Listeria phage B025, complete genome	5044-5079	3	0.917
NZ_CP019164_3	3.9\|2464590\|36\|NZ_CP019164\|CRT	2464590-2464625	36	JN700520	Staphylococcus phage StB12, complete genome	6832-6867	5	0.861
NZ_CP019164_3	3.2\|2464589\|37\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464589-2464625	37	JN700520	Staphylococcus phage StB12, complete genome	6832-6868	6	0.838
NZ_CP019164_3	3.9\|2464590\|36\|NZ_CP019164\|CRT	2464590-2464625	36	MW084976	Bacillus phage Kirov, complete genome	27565-27600	8	0.778
NZ_CP019164_3	3.2\|2464589\|37\|NZ_CP019164\|PILER-CR,CRISPRCasFinder	2464589-2464625	37	MW084976	Bacillus phage Kirov, complete genome	27565-27601	9	0.757
NZ_CP019164_3	3.8\|2464526\|35\|NZ_CP019164\|CRT	2464526-2464560	35	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	130632-130666	11	0.686
NZ_CP019164_3	3.8\|2464526\|35\|NZ_CP019164\|CRT	2464526-2464560	35	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	17622-17656	11	0.686
NZ_CP019164_3	3.8\|2464526\|35\|NZ_CP019164\|CRT	2464526-2464560	35	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	31860-31894	11	0.686
NZ_CP019164_3	3.8\|2464526\|35\|NZ_CP019164\|CRT	2464526-2464560	35	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	338888-338922	11	0.686

1. spacer 3.8|2464526|35|NZ_CP019164|CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

gaaattgtaaaatctatatccgttgattcaacaaa	CRISPR spacer
gaaattgtaaaatctatatccgttgattcaacaaa	Protospacer
***********************************

2. spacer 3.9|2464590|36|NZ_CP019164|CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

ttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
ttaatttgatagtcataatttatttcctcctatttt	Protospacer
************************************

3. spacer 3.9|2464590|36|NZ_CP019164|CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 0, identity: 1.0

ttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
ttaatttgatagtcataatttatttcctcctatttt	Protospacer
************************************

4. spacer 3.9|2464590|36|NZ_CP019164|CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

ttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
ttaatttgatagtcataatttatttcctcctatttt	Protospacer
************************************

5. spacer 3.14|2464911|35|NZ_CP019164|CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

gccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
gccatttacaatcacccttccggagtttgatctgt	Protospacer
***********************************

6. spacer 3.14|2464911|35|NZ_CP019164|CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

gccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
gccatttacaatcacccttccggagtttgatctgt	Protospacer
***********************************

7. spacer 3.14|2464911|35|NZ_CP019164|CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

gccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
gccatttacaatcacccttccggagtttgatctgt	Protospacer
***********************************

8. spacer 3.1|2464525|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

cgaaattgtaaaatctatatccgttgattcaacaaa	CRISPR spacer
agaaattgtaaaatctatatccgttgattcaacaaa	Protospacer
 ***********************************

9. spacer 3.2|2464589|37|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.973

cttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
tttaatttgatagtcataatttatttcctcctatttt	Protospacer
.************************************

10. spacer 3.2|2464589|37|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

cttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
tttaatttgatagtcataatttatttcctcctatttt	Protospacer
.************************************

11. spacer 3.2|2464589|37|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 1, identity: 0.973

cttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
tttaatttgatagtcataatttatttcctcctatttt	Protospacer
.************************************

12. spacer 3.3|2464654|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.972

tatagaaaggagttgatacagtgaaggatgttttag	CRISPR spacer
tatagaaaggagttgagacagtgaaggatgttttag	Protospacer
**************** *******************

13. spacer 3.3|2464654|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

tatagaaaggagttgatacagtgaaggatgttttag	CRISPR spacer
tatagaaaggagttgagacagtgaaggatgttttag	Protospacer
**************** *******************

14. spacer 3.5|2464781|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.972

cttgtaacccatcgctgtccctttgacaaaaatcgc	CRISPR spacer
cttgtaacccatcgctgttcctttgacaaaaatcgc	Protospacer
******************.*****************

15. spacer 3.7|2464910|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.972

cgccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
agccatttacaatcacccttccggagtttgatctgt	Protospacer
 ***********************************

16. spacer 3.7|2464910|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 1, identity: 0.972

cgccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
agccatttacaatcacccttccggagtttgatctgt	Protospacer
 ***********************************

17. spacer 3.7|2464910|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

cgccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
agccatttacaatcacccttccggagtttgatctgt	Protospacer
 ***********************************

18. spacer 3.9|2464590|36|NZ_CP019164|CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.972

ttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
ttaatttgatagtcataatctatttcctcctatttt	Protospacer
*******************.****************

19. spacer 3.10|2464655|35|NZ_CP019164|CRT matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 1, identity: 0.971

atagaaaggagttgatacagtgaaggatgttttag	CRISPR spacer
atagaaaggagttgagacagtgaaggatgttttag	Protospacer
*************** *******************

20. spacer 3.10|2464655|35|NZ_CP019164|CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.971

atagaaaggagttgatacagtgaaggatgttttag	CRISPR spacer
atagaaaggagttgagacagtgaaggatgttttag	Protospacer
*************** *******************

21. spacer 3.12|2464782|35|NZ_CP019164|CRT matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.971

ttgtaacccatcgctgtccctttgacaaaaatcgc	CRISPR spacer
ttgtaacccatcgctgttcctttgacaaaaatcgc	Protospacer
*****************.*****************

22. spacer 3.2|2464589|37|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.946

cttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
tttaatttgatagtcataatctatttcctcctatttt	Protospacer
.*******************.****************

23. spacer 3.3|2464654|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.944

tatagaaaggagttgatacagtgaaggatgttttag	CRISPR spacer
tatagaaaggagttgagatagtgaaggatgttttag	Protospacer
**************** *.*****************

24. spacer 3.5|2464781|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.944

cttgtaacccatcgctgtccctttgacaaaaatcgc	CRISPR spacer
cttgtaacccatcgccgttcctttgacaaaaatcgc	Protospacer
***************.**.*****************

25. spacer 3.10|2464655|35|NZ_CP019164|CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

atagaaaggagttgatacagtgaaggatgttttag	CRISPR spacer
atagaaaggagttgagatagtgaaggatgttttag	Protospacer
*************** *.*****************

26. spacer 3.12|2464782|35|NZ_CP019164|CRT matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

ttgtaacccatcgctgtccctttgacaaaaatcgc	CRISPR spacer
ttgtaacccatcgccgttcctttgacaaaaatcgc	Protospacer
**************.**.*****************

27. spacer 3.14|2464911|35|NZ_CP019164|CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.943

gccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
gccatttacaatcacccttccggagtttgttctgc	Protospacer
***************************** ****.

28. spacer 3.7|2464910|36|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 3, identity: 0.917

cgccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
agccatttacaatcacccttccggagtttgttctgc	Protospacer
 ***************************** ****.

29. spacer 3.9|2464590|36|NZ_CP019164|CRT matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 5, identity: 0.861

ttaatttga-tagtcataatttatttcctcctatttt	CRISPR spacer
-tagtttgattagtcattatttacttcctcctattta	Protospacer
 **.***** ******* *****.************

30. spacer 3.2|2464589|37|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 6, identity: 0.838

cttaatttga-tagtcataatttatttcctcctatttt	CRISPR spacer
-atagtttgattagtcattatttacttcctcctattta	Protospacer
  **.***** ******* *****.************

31. spacer 3.9|2464590|36|NZ_CP019164|CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 8, identity: 0.778

ttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
ttcttacgatagccattatttatttcctcctattaa	Protospacer
**  * .*****.*** *****************

32. spacer 3.2|2464589|37|NZ_CP019164|PILER-CR,CRISPRCasFinder matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.757

cttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
tttcttacgatagccattatttatttcctcctattaa	Protospacer
.**  * .*****.*** *****************

33. spacer 3.8|2464526|35|NZ_CP019164|CRT matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 11, identity: 0.686

gaaattgtaaaatctatatccgttgattcaacaaa	CRISPR spacer
aagattttaaaatctatatcggttgatttttttct	Protospacer
.*.*** ************* *******.  .

34. spacer 3.8|2464526|35|NZ_CP019164|CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 11, identity: 0.686

gaaattgtaaaatctatatccgttgattcaacaaa	CRISPR spacer
aagattttaaaatctatatcggttgattttttctt	Protospacer
.*.*** ************* *******.  .

35. spacer 3.8|2464526|35|NZ_CP019164|CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

gaaattgtaaaatctatatccgttgattcaacaaa	CRISPR spacer
aagattttaaaatctatatcggttgatttttttct	Protospacer
.*.*** ************* *******.  .

36. spacer 3.8|2464526|35|NZ_CP019164|CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

gaaattgtaaaatctatatccgttgattcaacaaa	CRISPR spacer
aagattttaaaatctatatcggttgatttttttct	Protospacer
.*.*** ************* *******.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

123987 : 130512

Listeria_phage(33.33%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721739.1\|123987_124440_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	4.0e-31	47.9
WP_003721740.1\|124445_124781_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003732219.1\|124997_125426_+	hypothetical protein	NA	NA	NA	NA
WP_003732220.1\|125437_125854_+	hypothetical protein	A8ASQ1	Listeria_phage	1.3e-20	39.3
WP_012952083.1\|126131_126521_+	DUF5072 family protein	NA	NA	NA	NA
WP_003721744.1\|126533_127046_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003721745.1\|127093_127396_+	hypothetical protein	NA	NA	NA	NA
WP_012952082.1\|127437_127842_+	hypothetical protein	NA	NA	NA	NA
WP_012952081.1\|127828_129697_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_003734720.1\|129693_130512_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	7.2e-39	35.0

DBSCAN-SWA_2

371491 : 379335

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722610.1\|371491_372451_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7
WP_012952019.1\|372569_373553_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	5.8e-51	37.2
WP_012952018.1\|373569_374631_+	galactose mutarotase	NA	NA	NA	NA
WP_012952017.1\|374672_376403_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.0e-175	54.0
WP_003722606.1\|376510_377386_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.9e-08	29.7
WP_003722605.1\|377387_378356_+	YvcK family protein	A1IMD5	Streptococcus_phage	6.7e-68	43.3
WP_003722604.1\|378363_379335_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4

DBSCAN-SWA_3

521539 : 560770

Listeria_phage(98.18%)

tail,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012951970.1\|521539_522898_-	recombinase family protein	Q8LTD8	Listeria_phage	1.1e-257	99.8
WP_012951969.1\|522958_524473_-	putative DNA binding domain-containing protein	NA	NA	NA	NA
WP_012951968.1\|524677_525112_-	hypothetical protein	NA	NA	NA	NA
WP_012951967.1\|525170_525878_-	hypothetical protein	A0A0B5CTT6	Listeria_phage	5.3e-123	99.1
WP_012951966.1\|525904_526396_-	hypothetical protein	A8ATX4	Listeria_phage	2.9e-91	99.4
WP_012951965.1\|526426_526732_-	helix-turn-helix transcriptional regulator	A8ASM2	Listeria_phage	1.8e-27	68.5
WP_012951964.1\|526894_527146_+	helix-turn-helix transcriptional regulator	A8ASM3	Listeria_phage	9.3e-22	76.7
WP_003733687.1\|527149_527344_+	hypothetical protein	A0A059T6E5	Listeria_phage	1.4e-25	95.3
WP_012951963.1\|527302_527662_-	DUF2513 domain-containing protein	A0A2H4J4K9	uncultured_Caudovirales_phage	2.1e-06	26.3
WP_012951962.1\|527726_527963_+	hypothetical protein	A0A059T5E9	Listeria_phage	2.8e-36	97.4
WP_012951961.1\|527959_528241_+	hypothetical protein	A8ATX8	Listeria_phage	3.6e-38	96.7
WP_003733684.1\|528242_528440_-	hypothetical protein	Q9T179	Listeria_phage	4.0e-20	96.0
WP_012951960.1\|528503_529280_+	phage antirepressor KilAC domain-containing protein	A0A0B5D0I2	Listeria_phage	9.6e-142	99.2
WP_012951959.1\|529403_529937_+	hypothetical protein	A0A059T5F0	Listeria_phage	1.5e-77	87.9
WP_012951958.1\|529933_530149_+	hypothetical protein	Q9T176	Listeria_phage	9.7e-28	93.0
WP_003722564.1\|530257_530446_+	hypothetical protein	Q9T175	Listeria_phage	1.8e-22	82.3
WP_157862701.1\|530515_530656_+	hypothetical protein	A0A059T7Q6	Listeria_phage	9.4e-16	97.6
WP_003734953.1\|530751_530946_+	hypothetical protein	A0A059T6E8	Listeria_phage	1.6e-29	100.0
WP_012951957.1\|530942_531419_+	siphovirus Gp157 family protein	A0A059T5F1	Listeria_phage	9.5e-76	100.0
WP_012951956.1\|531424_532084_+	ERF family protein	A8ASN3	Listeria_phage	5.3e-93	94.1
WP_012951955.1\|532100_533084_+	phage replisome organizer N-terminal domain-containing protein	A8ASN4	Listeria_phage	1.4e-166	91.7
WP_012951954.1\|533080_533368_+	hypothetical protein	A0A059T7V3	Listeria_phage	1.7e-40	88.4
WP_012951953.1\|533364_533895_+	hypothetical protein	A0A059T5F9	Listeria_phage	8.4e-97	95.5
WP_031645470.1\|534030_534261_+	DUF3850 domain-containing protein	A0A059T699	Listeria_phage	1.1e-18	73.8
WP_012951951.1\|534282_534642_+	hypothetical protein	A0A059T801	Listeria_phage	6.6e-45	92.0
WP_012951950.1\|534638_535040_+	hypothetical protein	A8ATZ6	Listeria_phage	1.4e-48	75.9
WP_012951949.1\|535036_535516_+	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	1.4e-74	91.2
WP_012951948.1\|535537_535915_+	hypothetical protein	NA	NA	NA	NA
WP_031645468.1\|535942_536125_+	hypothetical protein	A8ASP6	Listeria_phage	2.9e-17	81.0
WP_012951947.1\|536069_536474_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	1.9e-61	89.6
WP_012951946.1\|536477_536861_+	DUF2481 family protein	A0A0B5CYS3	Listeria_phage	5.7e-63	96.1
WP_012951945.1\|537001_537436_+	hypothetical protein	A8AU03	Listeria_phage	1.6e-74	97.2
WP_012951944.1\|537721_537949_+	hypothetical protein	A8AU06	Listeria_phage	1.5e-34	100.0
WP_012951943.1\|537988_538729_+	hypothetical protein	A0A0B5CTX0	Listeria_phage	2.4e-134	99.6
WP_047934348.1\|538694_540041_+\|terminase	PBSX family phage terminase large subunit	A8ATU6	Listeria_phage	1.1e-262	99.1
WP_012951941.1\|540055_541612_+	hypothetical protein	A8ATU7	Listeria_phage	9.4e-298	97.9
WP_012951940.1\|541616_542660_+	hypothetical protein	A0A0B5D111	Listeria_phage	1.9e-193	96.5
WP_003744996.1\|542755_543310_+	hypothetical protein	A8ATU9	Listeria_phage	1.1e-88	99.5
WP_012951939.1\|543332_544205_+	hypothetical protein	A8ATV0	Listeria_phage	3.0e-160	99.0
WP_012951938.1\|544218_544386_+	hypothetical protein	A8ATV1	Listeria_phage	6.4e-11	97.1
WP_012951937.1\|544386_544740_+	hypothetical protein	A8ATV2	Listeria_phage	7.6e-62	100.0
WP_003733695.1\|544739_545105_+	hypothetical protein	A8ATV3	Listeria_phage	9.9e-65	99.2
WP_012951936.1\|545094_545412_+	HK97 gp10 family phage protein	A8ATV4	Listeria_phage	2.4e-51	98.1
WP_010991155.1\|545408_545780_+	hypothetical protein	A0A0B5CTY4	Listeria_phage	5.5e-63	99.2
WP_012951935.1\|545784_546471_+	Ig domain-containing protein	A0A0B5CYK8	Listeria_phage	2.6e-114	97.4
WP_012951934.1\|546526_546958_+	hypothetical protein	A8ATV7	Listeria_phage	3.2e-70	95.8
WP_074046934.1\|546954_547266_+	hypothetical protein	A0A0B5D116	Listeria_phage	1.3e-41	96.7
WP_012951932.1\|547270_552070_+\|tail	phage tail tape measure protein	A8ATV9	Listeria_phage	0.0e+00	89.1
WP_012951931.1\|552066_553635_+\|tail	phage tail family protein	A8ATW0	Listeria_phage	2.0e-303	99.2
WP_012951930.1\|553647_555810_+\|tail	phage tail protein	A8ATW1	Listeria_phage	0.0e+00	98.8
WP_003722523.1\|555848_556214_+	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_003722522.1\|556226_556508_+\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_012951929.1\|556507_557353_+	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	1.4e-133	92.6
WP_003722520.1\|557393_558167_-	DUF3825 domain-containing protein	A8ATW5	Listeria_phage	9.5e-150	100.0
WP_012951928.1\|558441_558939_-	AP2 domain-containing protein	A8ATW6	Listeria_phage	4.9e-83	90.9
WP_012951927.1\|558950_559379_-	transcriptional regulator	A8ATJ2	Listeria_phage	3.9e-28	87.3
WP_012951926.1\|559380_559785_-	hypothetical protein	NA	NA	NA	NA
WP_012951925.1\|559886_560096_-	hypothetical protein	A0A059T7Z0	Listeria_phage	5.5e-28	97.1
WP_012951924.1\|560536_560770_+	hypothetical protein	A0A059T6E1	Listeria_phage	8.0e-36	94.8

DBSCAN-SWA_4

1074035 : 1082321

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003729814.1\|1074035_1075328_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.5e-17	33.0
WP_012951773.1\|1075408_1076122_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	1.2e-42	38.3
WP_003722248.1\|1076133_1076379_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_003722247.1\|1076382_1077066_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_012951772.1\|1077058_1079278_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.0e-159	41.1
WP_003722245.1\|1079262_1080690_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-53	34.6
WP_012951771.1\|1080708_1081758_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.6e-62	43.5
WP_003722243.1\|1081754_1082321_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9

DBSCAN-SWA_5

1622998 : 1684184

Bacillus_virus(17.65%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003732816.1\|1622998_1624705_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_003723454.1\|1624744_1626007_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_010989733.1\|1626020_1627163_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003732813.1\|1627177_1627966_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_003732812.1\|1627979_1628738_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003723450.1\|1628967_1629525_-	ribosome recycling factor	NA	NA	NA	NA
WP_003723449.1\|1629524_1630253_-	UMP kinase	NA	NA	NA	NA
WP_003723448.1\|1630545_1630920_+	hypothetical protein	NA	NA	NA	NA
WP_072217143.1\|1630897_1632103_+	helicase SNF2	L0P6E9	Lactobacillus_phage	3.7e-92	47.1
WP_003723446.1\|1632092_1633397_+	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	9.5e-134	52.1
WP_003723445.1\|1633406_1633913_+	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	4.0e-56	66.7
WP_003723443.1\|1634684_1635527_+	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_003723442.1\|1635577_1635817_-	YneF family protein	NA	NA	NA	NA
WP_003732809.1\|1636037_1638032_-	transketolase	NA	NA	NA	NA
WP_003723440.1\|1638178_1638406_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003723439.1\|1638497_1638827_-	cell division suppressor protein YneA	NA	NA	NA	NA
WP_003723438.1\|1638984_1639599_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003723437.1\|1639628_1640150_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012951579.1\|1640193_1641489_-	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	2.8e-146	61.9
WP_003723435.1\|1641632_1642967_-	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003719570.1\|1643037_1643406_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_010989728.1\|1643608_1644835_-	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003733804.1\|1644827_1646051_-	GTPase HflX	NA	NA	NA	NA
WP_003719566.1\|1646161_1646395_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_012951578.1\|1646517_1647435_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003723738.1\|1647560_1649237_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_012951577.1\|1649469_1650168_-	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	9.9e-13	32.4
WP_012951576.1\|1650380_1652249_+	peptidoglycan O-acetyltransferase OatA	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_012951575.1\|1652282_1654079_-	class 1 internalin InlK	NA	NA	NA	NA
WP_012951574.1\|1654410_1656144_-	LapB repeat-containing protein	NA	NA	NA	NA
WP_009913867.1\|1656470_1656938_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_010989723.1\|1657020_1659480_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	4.7e-102	31.6
WP_003723731.1\|1659476_1661444_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_003732802.1\|1661624_1662032_-	CoA-binding protein	NA	NA	NA	NA
WP_003724132.1\|1662189_1662786_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_009932949.1\|1662827_1663700_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724130.1\|1663702_1664014_-	hypothetical protein	NA	NA	NA	NA
WP_012951573.1\|1664036_1664456_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003726695.1\|1664558_1665338_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003732800.1\|1665358_1666768_-\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	3.7e-43	28.7
WP_003724001.1\|1666781_1667321_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_009911635.1\|1667341_1668244_-	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
WP_009924616.1\|1668526_1669831_-\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_012951572.1\|1669893_1671972_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.2e-107	37.5
WP_003723892.1\|1672243_1673104_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003723891.1\|1673237_1674023_-	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723890.1\|1674019_1674883_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003723889.1\|1674892_1675435_-	type I signal peptidase SipZ	NA	NA	NA	NA
WP_009924619.1\|1675536_1676106_-	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723887.1\|1676140_1676707_-	type I signal peptidase SipX	NA	NA	NA	NA
WP_003723886.1\|1676825_1678085_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_003723884.1\|1678269_1679553_-	trigger factor	NA	NA	NA	NA
WP_003732796.1\|1679667_1680606_-	hypothetical protein	NA	NA	NA	NA
WP_003732795.1\|1680867_1681533_-	hypothetical protein	NA	NA	NA	NA
WP_010989719.1\|1681550_1682084_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003727524.1\|1682202_1682418_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003723563.1\|1682568_1682964_+	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003723562.1\|1683044_1684184_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_6

1703326 : 1746337

Listeria_phage(91.23%)

protease,portal,holin,terminase,capsid,tail,integrase

attL 1703040:1703061|attR 1746433:1746454

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1703040:1703061	attL	NA	NA	NA	NA
WP_012951563.1\|1703326_1703560_-	hypothetical protein	A8ATC5	Listeria_phage	1.6e-36	98.7
WP_012951561.1\|1704000_1704183_+	hypothetical protein	A0A059T7Z0	Listeria_phage	2.3e-22	96.6
WP_012951560.1\|1704407_1705406_-	DUF3644 domain-containing protein	A0A0N9RUA4	Staphylococcus_phage	3.9e-71	44.8
WP_012951559.1\|1705509_1706355_-	M15 family metallopeptidase	A0A059T7Y8	Listeria_phage	5.4e-130	83.7
WP_012951558.1\|1706354_1706612_-\|holin	phage holin	A8ATB7	Listeria_phage	3.2e-25	69.0
WP_012951557.1\|1706611_1706914_-	hypothetical protein	A0A059T5E6	Listeria_phage	1.7e-38	93.0
WP_031644619.1\|1706961_1708056_-	hypothetical protein	A0A059T7R4	Listeria_phage	2.2e-184	87.9
WP_012951555.1\|1708045_1710340_-\|tail	phage tail protein	A0A059T7Y6	Listeria_phage	0.0e+00	94.0
WP_012951554.1\|1710352_1712002_-\|tail	phage tail family protein	A0A059T682	Listeria_phage	0.0e+00	99.1
WP_012951553.1\|1711989_1716921_-\|tail	phage tail tape measure protein	A0A059T5F4	Listeria_phage	0.0e+00	95.1
WP_009914372.1\|1716924_1717086_-	hypothetical protein	A0A059T6F4	Listeria_phage	2.1e-19	97.9
WP_012951552.1\|1717136_1717469_-	hypothetical protein	A8ATA5	Listeria_phage	2.8e-50	96.4
WP_012951551.1\|1717539_1718127_-\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	1.7e-106	99.0
WP_009931623.1\|1718147_1718531_-	hypothetical protein	A0A059T681	Listeria_phage	6.1e-65	96.1
WP_012951550.1\|1718527_1718929_-	hypothetical protein	A0A059T5F3	Listeria_phage	2.1e-68	100.0
WP_009934006.1\|1718925_1719291_-	hypothetical protein	A0A059T6F2	Listeria_phage	1.6e-62	96.7
WP_012951549.1\|1719274_1719574_-	hypothetical protein	A8ATA0	Listeria_phage	8.4e-46	97.0
WP_012951548.1\|1719583_1719754_-	hypothetical protein	A0A059T7Y2	Listeria_phage	6.3e-22	100.0
WP_012951547.1\|1719760_1720912_-\|capsid	phage major capsid protein	A0A059T678	Listeria_phage	3.1e-213	99.5
WP_012951546.1\|1720938_1721655_-\|protease	Clp protease ClpP	A0A1S5SFF8	Streptococcus_phage	9.3e-67	59.0
WP_012951545.1\|1721651_1722782_-\|portal	phage portal protein	A0A059T6F0	Listeria_phage	2.8e-214	99.5
WP_009917707.1\|1722832_1723222_+	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	3.7e-17	39.8
WP_012951544.1\|1723231_1724875_-\|terminase	terminase large subunit	A0A059T7Q8	Listeria_phage	0.0e+00	99.3
WP_012951543.1\|1724871_1725228_-\|terminase	P27 family phage terminase small subunit	A0A059T7Y1	Listeria_phage	2.0e-46	98.0
WP_009931610.1\|1725277_1725592_-	HNH endonuclease	A8ATF8	Listeria_phage	5.0e-57	98.1
WP_014930130.1\|1725591_1725918_-	hypothetical protein	A0A059T5G5	Listeria_phage	2.2e-55	100.0
WP_012951542.1\|1726386_1727130_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_009917712.1\|1727227_1727653_-	DUF722 domain-containing protein	A0A059T6H4	Listeria_phage	8.0e-74	100.0
WP_012951541.1\|1727694_1727844_-	hypothetical protein	NA	NA	NA	NA
WP_003731657.1\|1727872_1728142_-	hypothetical protein	NA	NA	NA	NA
WP_012951540.1\|1728138_1728678_-	DUF3310 domain-containing protein	A8ATF5	Listeria_phage	9.2e-75	77.1
WP_003731659.1\|1729125_1729338_-	hypothetical protein	NA	NA	NA	NA
WP_012951539.1\|1729339_1729657_-	VRR-NUC domain-containing protein	A8ATF4	Listeria_phage	7.3e-48	89.3
WP_031645568.1\|1729990_1732279_-	DNA primase	R4IBW2	Listeria_phage	0.0e+00	95.8
WP_031645567.1\|1732301_1732787_-	DUF669 domain-containing protein	A0A059T5G4	Listeria_phage	2.5e-87	98.8
WP_031645565.1\|1732811_1734068_-	DEAD/DEAH box helicase	Q8W5V9	Listeria_phage	1.6e-231	95.9
WP_003743935.1\|1734131_1734821_-	AAA family ATPase	A0A059T7T3	Listeria_phage	2.6e-130	100.0
WP_014929535.1\|1734833_1735313_-	siphovirus Gp157 family protein	A0A059T803	Listeria_phage	5.4e-79	100.0
WP_031645564.1\|1735314_1735698_-	hypothetical protein	A0A059T6A2	Listeria_phage	5.9e-60	90.6
WP_009933642.1\|1735694_1735868_-	hypothetical protein	A0A059T5G3	Listeria_phage	5.2e-24	100.0
WP_023548953.1\|1735900_1736335_-	hypothetical protein	A8ATS7	Listeria_phage	2.5e-38	52.8
WP_031645563.1\|1736331_1736550_-	hypothetical protein	NA	NA	NA	NA
WP_003731705.1\|1736546_1736819_-	hypothetical protein	A8ATE2	Listeria_phage	2.0e-46	100.0
WP_003731704.1\|1736815_1737145_-	hypothetical protein	A8ATE1	Listeria_phage	1.1e-57	100.0
WP_031645562.1\|1737145_1737355_-	hypothetical protein	A0A059T6C7	Listeria_phage	6.6e-13	59.1
WP_031645561.1\|1737351_1737567_-	hypothetical protein	NA	NA	NA	NA
WP_031645560.1\|1737670_1738129_-	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	1.7e-42	92.3
WP_031645558.1\|1738187_1738367_-	hypothetical protein	A0A059T5G0	Listeria_phage	1.7e-22	89.8
WP_031645557.1\|1738363_1738807_-	hypothetical protein	NA	NA	NA	NA
WP_031645556.1\|1738809_1739004_-	hypothetical protein	A0A0B5CU49	Listeria_phage	2.4e-25	93.5
WP_031645555.1\|1739006_1739606_-	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	1.7e-58	60.5
WP_031645554.1\|1739602_1739812_-	hypothetical protein	A8ASN7	Listeria_phage	5.7e-25	89.9
WP_031645553.1\|1739808_1740093_-	hypothetical protein	A0A059T7N1	Listeria_phage	2.3e-45	94.7
WP_023546294.1\|1740108_1740276_-	hypothetical protein	A8ASN5	Listeria_phage	1.5e-20	92.7
WP_031645551.1\|1740286_1740817_-	hypothetical protein	A0A059T5F9	Listeria_phage	2.7e-95	94.9
WP_031645550.1\|1740813_1741065_-	hypothetical protein	Q8W5X5	Listeria_phage	6.6e-36	95.2
WP_009931096.1\|1741201_1741354_-	hypothetical protein	A0A059T7S2	Listeria_phage	3.4e-19	98.0
WP_031645549.1\|1741588_1741774_-	hypothetical protein	A0A059T7Z3	Listeria_phage	1.9e-27	95.1
WP_014929519.1\|1741776_1742019_-	hypothetical protein	A8ATD2	Listeria_phage	2.0e-42	97.5
WP_023548969.1\|1742307_1743078_-	phage antirepressor KilAC domain-containing protein	A0A1Q1PVU2	Staphylococcus_phage	5.0e-66	49.4
WP_023548970.1\|1743091_1743268_-	helix-turn-helix transcriptional regulator	D2IZW2	Enterococcus_phage	1.1e-05	46.6
WP_023548971.1\|1743540_1743864_+	helix-turn-helix transcriptional regulator	A0A059T6G1	Listeria_phage	1.2e-34	66.4
WP_023548973.1\|1743880_1744333_+	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	7.7e-83	96.7
WP_012951517.1\|1744384_1745041_+	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_012951516.1\|1745182_1746337_+\|integrase	site-specific integrase	A0A059T688	Listeria_phage	1.6e-209	95.8
1746433:1746454	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1867867 : 1877420

Hokovirus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012951455.1\|1867867_1869781_-	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	1.3e-59	36.9
WP_012951454.1\|1869998_1871555_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.0e-17	28.1
WP_003730540.1\|1871683_1872088_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_012951453.1\|1872147_1872456_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003727000.1\|1872468_1873293_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_003721509.1\|1873304_1874795_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_010989660.1\|1875003_1876017_-	glycosyltransferase	A0A1V0SAH6	Catovirus	7.9e-11	32.0
WP_003732709.1\|1876031_1877015_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.1e-12	34.6
WP_003721506.1\|1877036_1877420_-	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7

DBSCAN-SWA_8

2896085 : 2906117

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012951084.1\|2896085_2898239_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	6.7e-44	34.1
WP_003732117.1\|2898262_2900035_-	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	6.3e-80	37.1
WP_003722118.1\|2900195_2901662_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.0e-97	40.0
WP_012951083.1\|2901949_2902480_-	ADP-ribose-binding protein	A0A0K1L687	Scale_drop_disease_virus	3.4e-29	49.3
WP_012951082.1\|2902537_2904148_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.2e-45	29.5
WP_072215787.1\|2904326_2904635_+	hypothetical protein	NA	NA	NA	NA
WP_009924391.1\|2904662_2906117_+	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	1.9e-50	30.3

Anti-CRISPR protein detection

Acr_ID: NZ_CP019164.1|WP_009914372.1|1716924_1717086_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP019164.1|WP_009914372.1|1716924_1717086_-|hypothetical-protein

1716924_1717086_-

53 aa aa

1703326-1746337

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP019164_3	Orphan	3.9\|2464590\|36\|NZ_CP019164\|CRT	2464590-2464625	36	1720897-1720932	1
NZ_CP019164_3	Orphan	3.14\|2464911\|35\|NZ_CP019164\|CRT	2464911-2464945	35	1719750-1719784	0

1. spacer 3.9|2464590|36|NZ_CP019164|CRT matches to NZ_CP019164 position: 1720897-1720932, mismatch: 1

ttaatttgatagtcataatttatttcctcctatttt	CRISPR spacer
ttaatttgatagtcataatctatttcctcctatttt	Protospacer
*******************.****************

2. spacer 3.14|2464911|35|NZ_CP019164|CRT matches to NZ_CP019164 position: 1719750-1719784, mismatch: 0

gccatttacaatcacccttccggagtttgatctgt	CRISPR spacer
gccatttacaatcacccttccggagtttgatctgt	Protospacer
***********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019164

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information