CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009245	Corynebacterium aquilae DSM 44791 strain S-613 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,WYL,DinG	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009245_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009245_1

689263-689398

Orphan

Consensus_repeat	Method
CCAGGGTGTCAGAGTGACACCCGGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP009245_1

>merge|NZ_CP009245|1|689263-689398|CRISPRCasFinder
CCAGGGTGTCAGAGTGACACCCGGAAGATTCTTGTGGAAGAAAGCCGCAGGTCAGACCCAGGGTGTCAGAGTGACACCCGGAGCGATTTCCGGGTGTCATCTGAGCAGGTTTCCGGGTGTCAGAGTGACACTCGTA

>NZ_CP009245|1|1|689263-689398|CRISPRCasFinder
CCAGGGTGTCAGAGTGACACCCGGA	AGATTCTTGTGGAAGAAAGCCGCAGGTCAGAC
CCAGGGTGTCAGAGTGACACCCGGA	GCGATTTCCGGGTGTCATCTGAGCAGGTT
TCCGGGTGTCAGAGTGACACTCGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009245.1\|WP_157108875.1\|697549_699292_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_CP009245.1\|WP_075725095.1\|688606_688927_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075728330.1\|687845_688184_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285830
NZ_CP009245.1\|WP_075725084.1\|679573_680119_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320703
NZ_CP009245.1\|WP_157108873.1\|678375_679374_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274832
NZ_CP009245.1\|WP_084562741.1\|684592_687604_+\|UPF0182-family-protein	unknown	unknown	gnl\|CDD\|234609
NZ_CP009245.1\|WP_075725086.1\|680225_681665_-\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|378392
NZ_CP009245.1\|WP_157108874.1\|682954_683668_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075725108.1\|695081_695375_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075725088.1\|681834_682884_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|226011
NZ_CP009245.1\|WP_075725103.1\|691650_692463_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075725107.1\|694433_695045_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_169836019.1\|692529_694326_+\|cutinase-family-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075725101.1\|690570_691599_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP009245.1\|WP_075725092.1\|683692_684208_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075725110.1\|695864_696569_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075725099.1\|690023_690353_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_CP009245.1\|WP_075725111.1\|696572_697493_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075728332.1\|695512_695776_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075725080.1\|676315_678379_+\|ATP-dependent-DNA-helicase-UvrD2	unknown	unknown	gnl\|CDD\|223288

Protein	Function_ID	Function_description	E-value
NZ_CP009245.1\|WP_075725088.1\|681834_682884_+\|PDZ-domain-containing-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	5.0508e-82
NZ_CP009245.1\|WP_075725084.1\|679573_680119_+\|M48-family-metallopeptidase	gnl\|CDD\|320703	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin. M48 YhfN-like protease is considered as a CaaX prenyl protease 1 homolog, with most of the sequences in this family as yet uncharacterized. It contains the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. It is probably associated with the endoplasmic reticulum (ER), regardless of whether its genes possess the conventional signal motif (KKXX) in the C-terminal. Proteins in this family proteolytically remove the C-terminal three residues of farnesylated proteins. This novel family of related proteins consist of the soluble minimal scaffold similar to the catalytic domains of the integral-membrane metallopeptidase M48 and M56, thus called minigluzincins.	2.11217e-20
NZ_CP009245.1\|WP_075728330.1\|687845_688184_-\|hypothetical-protein	gnl\|CDD\|285830	pfam08667, BetR, BetR domain. This family includes an N-terminal helix-turn-helix domain.	3.1358e-05
NZ_CP009245.1\|WP_075725101.1\|690570_691599_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	8.89436e-08
NZ_CP009245.1\|WP_157108873.1\|678375_679374_-\|hypothetical-protein	gnl\|CDD\|274832	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.	0.000551906
NZ_CP009245.1\|WP_075725099.1\|690023_690353_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	0.000150264
NZ_CP009245.1\|WP_157108875.1\|697549_699292_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	9.94944e-11
NZ_CP009245.1\|WP_084562741.1\|684592_687604_+\|UPF0182-family-protein	gnl\|CDD\|234609	PRK00068, PRK00068, hypothetical protein; Validated.	0
NZ_CP009245.1\|WP_075725086.1\|680225_681665_-\|zinc-dependent-metalloprotease	gnl\|CDD\|378392	pfam10103, Zincin_2, Zincin-like metallopeptidase. This family of proteins has a conserved HEXXH motif, suggesting they are putative peptidases of zincin fold. The structure of this family has similarity to Peptidase_M1 (pfam01433, Structure 3CMN).	2.8718e-82
NZ_CP009245.1\|WP_075725080.1\|676315_678379_+\|ATP-dependent-DNA-helicase-UvrD2	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.49085e-116

>NZ_CP009245.1|WP_075725095.1|688606_688927_+|hypothetical-protein
MSEKTYNLVRDHAELYVEHKLPLTVLAVAADDTGAATMSLAELSRKSRYSPLEVSGALETLNALGVIQSVTIHEDVVSCQIDINGLAAGAYAKPLPFVFDDGEVES
>NZ_CP009245.1|WP_075728330.1|687845_688184_-|hypothetical-protein
MTIAQPTGLGLNAAVGVSINDLMFRNRVTRKQLGEALGITGAGMSKKLLGNAAWTIEDLYAIADFFNVPVETLLPRRVQLPDAENKKTPSQTRGGNPNVVAGAGFEPTTSGL
>NZ_CP009245.1|WP_084562741.1|684592_687604_+|UPF0182-family-protein
MAASLKRPRSAKKPTSWVAWIIVIFSILATILPIIIGMSTDWLWFKEVDYTRVFSTVLLARLSLFLGVGLFSALVVWVAIITVYNTRPMDLPELDPEHPVAMSRQVVDNFRKTLFVVLPLVMGLVLGTVAQTNWSTVLLFFNRTSFGKSDPQFGYDYGFYAFTLPLLQLIVGILSMLLIVAFLLGLIGHYLTGGIRIGNRLAGVSGFVSKAARTQLAITAGLWVLVKVAGYWLDRFALLTNNHASFMGGSYRDINATLPAKTIMMVIGVLVALAFFTAVVFKDLRIPALGTVLMLIASILIGQAWPLAVEQFSVAPNRQAKEAEYIGRNIEATRYAFGLTDANVTYEKNWGADGASDEAVASDAATLSNIRLLDPKILSKTFTQQQQLKNFYGFPETLNMDRYTVDGELRDYVVAARELNPKDLSGNQTDWINRHTVYTHGNGYVAAQANKVDEVAKDVGSTRGGYPVYTVADLQTLQRQKDNPEAEKIGIEVTEPRVYFGPVIAGDNPNLDYAVVGNNGGEPVEYDTDTSTYTYQGRGGVPIGNPVSRALFAARYQEMNLLLSDRIGSESKIIFQRDPRTRVKKVAPWLTADSATYPAVIDGRIKWIVDGYTTLDNLPYSQRTSLTDATADSRGAGMNSALLVSQQVGYIRNSVKAVVDAYDGTVDLYEFDDKDPVLKAWEGVFPGSVKPKSEISEELRKHLRYPEDMFKVQRELIAKYHVDDPRTFFTGDAFWSVPKDPTSQDERRETNQPPYYVVAADPKTKQPSFQLISPFRGLEREYLAAHMTVNSDPDNYGHITVRVLPTNTQTQGPKQAQDIMMSSDNIARDQTLWKNTNTLRYGNLLTLPVGGGEILYVEPMYTERKGQASAFPKLLRVLVSYKGRVGYASTSAEALSQVGIDPREANDLEEAIASGATQLGDKREVDENKDDASKKEGGETSLPAGQLPSGDGVERINRAIDALRDAKGKSFEEYGRAIDQLDAAVQDYQRSQGQQPAADLPKP
>NZ_CP009245.1|WP_075725092.1|683692_684208_-|hypothetical-protein
MASAPLSQALNRAVMDVVEFVHAEGWDCPPTLCALVPTSLVEEVLDEEQLDDAPLAAVVQQLPEQLQPGTQELGDYIQRIVWPEQVLGCVLAQEIMFASPDDEDDVRPARLFSGVLASGEELTLVQPRPTDEELEELGPFGQDNIELRGGDGIGRPVIEALLYSLRDRDGE
>NZ_CP009245.1|WP_157108874.1|682954_683668_-|hypothetical-protein
MPVRLAGAVLCVAAGVAGCSADGGEDRSADASVAVSSTVPVTSAAAAASSSVVDASSEVVSPASSVVVSSKPVSSSVSSAATSGLLAEDVRVSAAATSEPSPGGDLSEQAAGSFANSSVEDVFERFGSLAPRSLFERFEVCSPNGVPNSAACSGPSVGQFQFFASDAKAASMTQLLTELRSSRVVKDSGSMVVGWSTLGTTAIVTVVDNDKGVVMQHMITSDKQDPGEVIRDLHLAD
>NZ_CP009245.1|WP_075725088.1|681834_682884_+|PDZ-domain-containing-protein
MNRRLATLVWGLIPVVVATTLINNTHIPGTDYQLTVPLAAEGPGPVFNTLGDVSGEKVVAIDGAPTDATTGTMYMTTVAVRHNMPLSQALSRWIGTNDTIVPLDAVIPQNKTEEEVNEANKVAFASSENSATIAALNYLGKKLTIEVSDTVPDAPAADKLTPGDTITHVDGEKVTTPSQVQKLVRNKKPGDTIDIGYTHQGQPHNALFTLAANPHDDSVPQLGVLMKAVSDDGIDVKYNLQDIGGPSAGLVFTLTVIDKLTPEDLLDGHTIAGTGTIAGDGDVGPIGGIRHKIDAATAAGAEAFLVPAANCDEARRADTNIPLIKVNKLDDAVDSVKAFVAGKPVTTCQ
>NZ_CP009245.1|WP_075725086.1|680225_681665_-|zinc-dependent-metalloprotease
MSNGGFGFSFGNRDDDDRDDDNNRGGQPGDPFSFFFGPGFGSGSQGGGANPLGDMLSGFSNLFGPPQSGEEPDSFIDPEAVRKAVQSRITRMGSQIAKPASKDAAAVEEASRLAELWLDATTELATSGAKGTAWSAGDYALNSLPFWLRVAEPARAAVSETPVLGLGGDAQGAPGELMGAMQQFMRRQNAVMETQRVAEAVVQLSQSIVSGTDLGLPAAPANTLAIMTRTFRDEISSLDIPDQEALVYVCAREAARQRLFKNVPWLAESIVSSVEEWAAGAYVDTSHAEQYMRDNFDGANMENIAEIMQKMQSIDPQEIAPRLVSANENAVPRLEALIALIEGWVDVVVTEAVTDRLPNADKLRAAFKHRRNSGGTAATALEAITGCAIGTPPIDGAITLWERTTNAVGAARRDACWEHPDLAPSHEDIEHPARFIDRLLDDSIDADFDPIAEIEELEKKLGESDVDPESRENPTDEGD
>NZ_CP009245.1|WP_075725084.1|679573_680119_+|M48-family-metallopeptidase
MTRPHVTIIRSPRRRKTVSARHVGDTIEVRLPAGLSASEEQRHIDSLVKKLTNRTTSGARASDADLERRAHTLNAQYLESKARCTSIRWVGNQKTRWGSCTTSTGAIRISDRLKKAPDYVIDAVIVHELVHTFHPGGHDAEFYAWADRVPHAERAKGYLQAYAQFLNHGGPAGNLETFTTD
>NZ_CP009245.1|WP_157108873.1|678375_679374_-|hypothetical-protein
MADRVLRVDPRATPPADHVVDGARRLVCLRDSAVVVVRDAFSVQFGVDAASAGVLLLRQGEDAAGVCRVLRAARQPVGLTALADGLCGCGVPRHRARVMIADLLCAGVLVDWFADPGEVVVLGDGPAVAALVEALGEVCGVVARRVGRGQADAQAIAGAAGVCPVVLVNYWRPTSAVCRALVEHSARVVPVSFVGEVVEVGPLHVDGRGPCVVCAELRRRERDPLWASVAKELVLSPGGAGGVGWEKGWLGRASLVAALLLRPLLVAGVNPPAGGAVGWVPGAVVRAGLGSWEVSASTLPSHPLCPDCFERRSRAAAAGKRVAGRRPDGAGV
>NZ_CP009245.1|WP_075725080.1|676315_678379_+|ATP-dependent-DNA-helicase-UvrD2
MIDLNSLDDDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPQRVLAVTFTSRAAGEMRHRLATMGIGGVQARTFHAAARRQLAYFWPQVAGSLPWKLVDNKFPLVGRAVRGAGLENNTDMVRDVLSEIEWAKASLISADAYPAAVDSSGRTAPADPQKIAQAYRLYEQAKTSEDGMLLDFDDLLVHTAGALENSAAIAEEFRQQYRSFVVDEYQDVTPLQQRVLDAWLGTRDDLTVVGDANQTIYSFTGATPDYLLNFSRKYPHASITRLQRDYRSTPQVTDLANTVIGQAQGRVAGTRLTLEGMRPAGGEPTFTSYDDEPSQARGVAKKIAQLINQGIPAREIAVLYRINAHSALFEQALSEENIPYQVRGGEGFYNRPEIRAAITELVRLSGRDDLPEQAQGAGLVRVVRAALAPLGLSASEPEGAQARERWQSLNALAELVEELASITGDLTLPGLLAELKTRADAKHPPSVDGVTLASLHAAKGLEWDAVFLVGLSEGSLPIKQAIKAGAEHIEEERRLFYVGITRAREHLHLSWALARQEGARASRHRTRFLDGIVKDPEPITSGHSARKTAHCRTCGITLDTPAEKVLGRCLDCPGDTDHDLVEHLRQWRKRTADELNQPAYIVFSDATLLAIAEAQPRTPTELLGITGLGPVKLERFGQSLLDTLEDYLS
>NZ_CP009245.1|WP_075725099.1|690023_690353_+|WhiB-family-transcriptional-regulator
MTAARIAQEVAGAPILNRLPLAPIPPMRGALCADPEIPSELWDWQGPDEPRALAEERYELAREVCAMCPIAARCLQIAEGDPMASGIWGGKLFRPPHRRKNEHRDTHKK
>NZ_CP009245.1|WP_075725101.1|690570_691599_+|hypothetical-protein
MKNLSALALATLSSVAVAAVVSPQAGAAERVVRGPQWEDEDVIVTVTDHTSPAVDSVEHIEVVILPQENPERATSARVVRGPQWESTPEAGTAATTPTGGAQSVPETTTTTPAPAPAAAAPAERQPVSNIHAAAVSPRLVNAVATQPAPAATTTTTAAVEESVAAPQESAVQVNQPQPQAPTTQSRTTESDSFVEIKAEREAANPVAPAAPAAPVAQAEIPELQAPVEGGKRATVTITYPGGVAAANATDNNHGRVEVVTTHTRGGATTTDTWVSQATHTTWNVQRNGHEVVNLTVPAGYEQIAEDLGAKAEAAGMNPFVQPYGRHALRVGGVDIAGELKQA
>NZ_CP009245.1|WP_075725103.1|691650_692463_+|hypothetical-protein
MATNWFDWADAQQQAASDSLSELIEPAEAPEATEQADHALPAAAKPLRGLRLPHRVKKATDQPVVAAEPVEAAAIEESEPSAPRRSRKLTSVMGVTAALALAAMSGAAVMKMTEGDTSSKLLVSSSIAVPSTTVPKAGPQPGVEAIDDDAKVAVAGSHCVPGAGETKVTETDTTLRGALAAFERAYFDRDAAAVKAAFDASTPLASRDWQQVLDKTVVDGTQWCLRMQPVDGDHVDASVTVTDPSGQASTYEQTVTATEVDGKYKLKDFS
>NZ_CP009245.1|WP_169836019.1|692529_694326_+|cutinase-family-protein
MTRTPRRLLALPVAAACLASVVTPVATAQDQTASNTCPQMQIVVVRSQAEASGLDNADSGFLGGIVAPVVNAANDGAVKDPSAGFTAAPGAKFGDVDTAAKVAAEQGNKSWKPDVWGTKPSANETGLETKKDSWKPDVWGTKPSTQATTTTTPVKQAAGPAKVGRTYVNISTGRAGAFIPGVHSETVPDWQQVIQGGVDQVSATLEDIHTKCANTRVALIGEADGAAVVSEVARNIGNGESNFPADLVSGVATFANTARAEGEGIVASHADRPQAVPGTSGAAMSQISAVKPDGAAGGGIAVAAEAAGPHRSYGKLAGRTVSLCAEGDARCATKKDAPLVRLAAATEKKVNFLDDPLGSLQHITDTLGPAVLLGTMETLAQDINYGPRGFSVKSAKNVNSTLIGRIVSNTERNVSDREFEDRLMAAAQTVGGMALNVVGTAVAKSVTPQAIATIGAAFQAAGPQGAGAAALAVFVPNLISEITSAFNPETLNTAQRRLVQEAEAAGLENTDVVQAALASATTRQQATQGYRSTRVGESNTSFEGYAKQWLTAQAADVIGRDGGQMLNTVLAQNNLPQVPPGVFNAENVQNTLNAFLKA
>NZ_CP009245.1|WP_075725107.1|694433_695045_+|hypothetical-protein
MTTPRITRVRERYKLDHATQPLCASEAKDDLPATFAPAFWLVAAHGGAGVTTLEKFWQPAADAQRMWPQADESTACVVVARSTKAGLEAAAQTILNDTGNAEIIGLVVVADVPGKLPKDLAHKLRMFDEQLPVWRIDYLPKLRLVDEEQLACWRPGDDIDTSRKAKKLGLDEQVPAQVARVGEEIFEAVRTHREATGHTSETE
>NZ_CP009245.1|WP_075725108.1|695081_695375_+|hypothetical-protein
MNNVIDRVNTTLILAQMPGENMSPQAPEAFRSKMDMGLNLAFYIGILVAIIGVIVAGSTMVLSRREGSSEEATAMALRIGFGAMIIGSASAIIGAFL
>NZ_CP009245.1|WP_075728332.1|695512_695776_+|hypothetical-protein
MAQSAPPARPWTPPPDVTATAIYWLGIVSFVALAVSILAVIAFGALMILDRDRGEPVSATHPAVRALRIALGVMVISSATSLAAFFA
>NZ_CP009245.1|WP_075725110.1|695864_696569_+|hypothetical-protein
MNALKNAIFFVLNLPGMILRFIFGSIKLILQLLMLWVIVGLGIAACHATTQPPAEEREPVGIQWNAGPAGIQVPSGKAGPNVTSPIPHGYQNTTHGAVLAAMNTQAWLAGADDETYPLVIEYLLAPGDGALQWAQARSLLTVSGEAQDNPPEFVGFQMDEPEGNEAVVVLAVRYPNGVIGAQPVQLDKSSGGWRVVLPTQDQAVDMQEITEEQLKKNFVAFGPHVGKSAEKENK
>NZ_CP009245.1|WP_075725111.1|696572_697493_+|hypothetical-protein
MSENDTATANSGRKNLLLVIAAILLALVLVVGLGIKLFGGHDDDTTAAPATTRPDTAIKTSYVKPGKGEKILRELTLDYPNGFDPHQRHFDRQFFDDSQYEIGKYGTDINGDPILMPVGENGEAFGEFKPTDKLDCTVPDEIDVQQQYVHGRVLGVSDQGPTNFEGFVPTGYAKTAVGAVIAASNAGTMAAPYYDPIALEYYKGYIRSKEADKRVELGVRTPVPHGGILPTYAGFKIENCGGDIVTVVGAMKAINPNTREYYYGLIRTPMRWEDGMWLVVVNDQDAKLADQGTVDNLSGFTLVNKV
>NZ_CP009245.1|WP_157108875.1|697549_699292_+|hypothetical-protein
MALLFLATPAWAQDDADAGNPVETNGSKVSGTFNDCKEWLADSNRRLVGDDPAEADDWAAKLTGWLRNGECGLGAVAAHPIDAVKAAKDKVAGFWNDPVGKFTKAVMEGNTQMLTLAMTFWMDYNYGANGQLDANIRGVLNIVYGLAGFFLIAGFIVGGARLAAARRMGLQEGIEDIGSHVGRWLIYSTLVPAIATGGFWASDALAQAIMDNFGATDPNSFIEMTALEDIKLGPVVMLVLALVALAGSCMQLVALVVRQLMLPIAVGVAALFAAASFSDTGKNGLKHLEGWIIAAIAFKPISALFYSVTLWYVTLPGSGDDMMGAIINALMIALAGFSAPALVRMIVPAVAQAGGGSAGAFAASVGGAAGAMLGATAAMGGGLSALAGGKGGSGSGGAAGGPAGGGGGPSGGGGGGGGVGARTSAGTPSMRGAASTAAAPTGASGGGGRARAGGSSGGAGGGSAAPSGASPGARNTSGAGNSRTSASTSSQPSGARAGAASRARAGAAAAGRGLAGASRAVGGAARSAGAASRSVARGTGAAVAGASRAGAQAAQFMQSTANSGSQIFEGSLGYPGQMHR

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Crispr_ID: NZ_CP009245_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP009245_2

2622972-2623063

Orphan

Consensus_repeat	Method
ACCCGGAGCCGTGGCATTTGTCGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP009245_2

>merge|NZ_CP009245|2|2622972-2623063|CRISPRCasFinder
ACCCGGAGCCGTGGCATTTGTCGCAGGGGGCGCTGAATCCGAAGGCACCTTTGTTTTCACTGGTAAACCCGGAGCCGTTGCATTTGTCGCAG

>NZ_CP009245|2|2|2622972-2623063|CRISPRCasFinder
ACCCGGAGCCGTGGCATTTGTCGCAG	GGGGCGCTGAATCCGAAGGCACCTTTGTTTTCACTGGTAA
ACCCGGAGCCGTTGCATTTGTCGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009245.1\|WP_075727746.1\|2620779_2621886_+\|DUF1648-domain-containing-protein	unknown	unknown	gnl\|CDD\|226657
NZ_CP009245.1\|WP_075727732.1\|2611924_2614483_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP009245.1\|WP_075727758.1\|2627436_2628663_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP009245.1\|WP_075727740.1\|2617240_2618410_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP009245.1\|WP_075727752.1\|2623792_2624374_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237632
NZ_CP009245.1\|WP_075727754.1\|2624377_2626207_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP009245.1\|WP_075727738.1\|2616980_2617247_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_084563261.1\|2628776_2632016_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NZ_CP009245.1\|WP_075727734.1\|2614753_2615959_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99784
NZ_CP009245.1\|WP_075727748.1\|2622008_2622422_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NZ_CP009245.1\|WP_075727730.1\|2610985_2611819_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_CP009245.1\|WP_075727766.1\|2633353_2633773_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075727742.1\|2618544_2620065_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
NZ_CP009245.1\|WP_075727762.1\|2632666_2633065_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075727756.1\|2626926_2627097_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_CP009245.1\|WP_075727760.1\|2632373_2632667_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP009245.1\|WP_075727768.1\|2634316_2637778_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143443
NZ_CP009245.1\|WP_075727744.1\|2620388_2620766_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NZ_CP009245.1\|WP_075728722.1\|2626589_2626826_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_CP009245.1\|WP_075727736.1\|2615986_2616844_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143605

Protein	Function_ID	Function_description	E-value
NZ_CP009245.1\|WP_075727746.1\|2620779_2621886_+\|DUF1648-domain-containing-protein	gnl\|CDD\|226657	COG4194, COG4194, Predicted membrane protein [General function prediction only].	3.12681e-19
NZ_CP009245.1\|WP_075727732.1\|2611924_2614483_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP009245.1\|WP_075727758.1\|2627436_2628663_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	7.94509e-66
NZ_CP009245.1\|WP_075727740.1\|2617240_2618410_+\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	1.9624e-14
NZ_CP009245.1\|WP_075727752.1\|2623792_2624374_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237632	PRK14164, PRK14164, heat shock protein GrpE; Provisional.	8.99046e-65
NZ_CP009245.1\|WP_075727754.1\|2624377_2626207_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP009245.1\|WP_084563261.1\|2628776_2632016_+\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	4.17815e-89
NZ_CP009245.1\|WP_075727734.1\|2614753_2615959_+\|hypothetical-protein	gnl\|CDD\|99784	cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.	9.76046e-49
NZ_CP009245.1\|WP_075727748.1\|2622008_2622422_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.03214e-41
NZ_CP009245.1\|WP_075727730.1\|2610985_2611819_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	1.8663e-77
NZ_CP009245.1\|WP_075727742.1\|2618544_2620065_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP009245.1\|WP_075727756.1\|2626926_2627097_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	8.47462e-17
NZ_CP009245.1\|WP_075727768.1\|2634316_2637778_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
NZ_CP009245.1\|WP_075727744.1\|2620388_2620766_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	4.19459e-28
NZ_CP009245.1\|WP_075728722.1\|2626589_2626826_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	3.03799e-21
NZ_CP009245.1\|WP_075727736.1\|2615986_2616844_-\|hypothetical-protein	gnl\|CDD\|143605	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	2.5835e-89

>NZ_CP009245.1|WP_075727748.1|2622008_2622422_-|helix-turn-helix-transcriptional-regulator
MAENTDNTDNTEVYVISVAAELSGMHAQTLRTYDRIGLVTPQRTRGGGRRYSRSDVETLRTIQRLSQDEGVNLAGIKEILHLKAENERLRRANQQLREENEHLRATSTRPRGELVHVPRSTAVVMWEKRPARKRGSN
>NZ_CP009245.1|WP_075727746.1|2620779_2621886_+|DUF1648-domain-containing-protein
MLSFVLIAELSLLTSTLILLMLGRFRQQRTPYGVPIPKSKVDDPAIAAAARRYRLIVGGAGLVTCVVAAIPPASHTVWPLLLGSFALSIASIIGWKQAASHIRRQGWTVPKQGMVGNVAGTSLNQITPGTISWAPHIMALVVIVATTLMLIAQWSQIPDTFATHFSTSGEPNGFTDKGPGVFFAQFMGFGVTALSLGMSWMQTAGLAYTRSTKGAKDRARLQAMMQASEKGSAWLMCSLSALVAVLGLALALPDTTPLPPGNSNVWVALFVIVGIIGSLAMVAWIMISGERSAGLAEPDLDEPDEQVTFDRTPYLKWGLFYYNPDDPALFVEKTIGMGIDFNYAHWPAKVFGVVIVCLLLAPLSLALL
>NZ_CP009245.1|WP_075727744.1|2620388_2620766_+|GntR-family-transcriptional-regulator
MPIIVDPFSTTPIFTQLHDSIVKAIASGELAPGTKLNSVRMVAAEFGINPATVKKAYDLLQEEGVVVTHPREGTVVARPTRATAVQRKAIAAQVETALALGKAQGMTPAQLASACSSVLASFSAS
>NZ_CP009245.1|WP_075727742.1|2618544_2620065_-|aldehyde-dehydrogenase-family-protein
MTVYARPGTEGAIANYRERYDNYIGGQWVAPVDGEYMDNITPITGEVFCQVARGKAADVELAVEAAEKAKASWGAMSAQKRGNILLQIADRMEQHLEELAVAETWENGKAVRETLAADIPLAIDQFRYFAGVVRTQEGGISEIDEYTVAYHFQEPIGVVGAIIPWNFPLLMAAWKIAPALAAGNCMILKPAEQTPASVLYLLDLIGDLLPAGVLNVVNGIGTEAGAAITANKRIMKVAFTGSTAVGKLIHQAVADRIIPVTLELGGKSPNVFFPDVMDKDDEFLAKAVEGVAMFALNQGEVCTCPSRALIHEDIADEFIAKVVEKVESIRTGDPLDTDTMMGAQASEEQMEKISGYLTSGPAEGAEVLTGGAVAKIDGFEGGYYIQPTILKGDNSMQCFREEIFGPVLAVTTFKDFDEAMEIANDTEYGLGAGVWTRDQNTAYRAGRAIQAGRVWVNNYHSYPAHAAFGGYKESGLGRETHKMMMSHYTQTKCMLVSYSERPTGLF
>NZ_CP009245.1|WP_075727740.1|2617240_2618410_+|hypothetical-protein
MLTQWAGQAADLEHTATQLRQLARSRSPIPALADAVTHHVAGWVDQARRRQEHLEAEALKSFEAIAAVEDTLVSAAAALTQLTGWAELVRRTLPADSPLIAQLHQLVAELGHELDEACAHHIDIATDLLCPNPDPTTRVGLADFGTVSAAHIDAINRQTLQHSALPEAMREVVAAQDVQVLEAGATTAVMAIGDIDTAPAVITIVHGVGSADPARWAGNLDRARHLATLSGAAVVSWFGYHAPPTVLAGIAHDPADTAGRAINDFQQALRARRPDARLVLVGHSYGSVVAGQAASRAADPLAADAIIFAGSPGVGVPNAAELHATPGGSVIASLGTRDAIGVVSGIHGPDPTSAAFAADTVPIAGGHSDYFEDPDFVQAVVDSTKRPPH
>NZ_CP009245.1|WP_075727738.1|2616980_2617247_+|hypothetical-protein
MLTYHPDLDRARDTIASAPAFSSHRFHPTVHSGRTATALSRFATALADADTRSYDGSEDLRADMLAGCDAVRAVEERNAAEIAGRYPC
>NZ_CP009245.1|WP_075727736.1|2615986_2616844_-|hypothetical-protein
MRISLVQMTSGKDVPTNIERACDFIREAAEKGSSLVVFPEATMASFAVGKLDGVAAEYGDTFAARLQATARECGVVAVAGMFSPADTVQRNGKTIHRVENLAGIFGLDAQQFYAKFHCYDAFGFRESDTVRAGEDLVVFEVDGVKVGVAICFDIRFPEQFVRLAQLGAEVIVVPASWAQGPGKAEQWELLARARALDSTSFVLACDQGCPADEDPESPTKVPLGVGRSVVVAPNGQVEHRAGSYEEVVHVDIDLDKVGAMRAQVPVVAMREDMPVVGLHPVSDQQ
>NZ_CP009245.1|WP_075727734.1|2614753_2615959_+|hypothetical-protein
MPTPSVSTVATAIATHPRVFHRAVHTDFASRCPQALTLNKQPAAHEELVLAVVWALRTTVADTGEDNPTTIGEFTQAVISQLGTEHRRSDTDPAHYPLFARSLAAGVDAACRAALLPPNSAAQQAATSLLNQCCQTMAAAAHQADMAGYPAYTGGTVVEVDKRCRRFHVIRVQADAPVKHPAGGALAVCGELDPGVWRTLCPAFPANEYGQLEFHIPIPDIPGADAFITTPKVGDRWRIAAPYEPINVTLDSDLLLISAGAGIAPLRAITADVMMQATPPRIHFFVGADYPGELYDLLSLWHTAATSPLLSVVPVVKHDTDTWWVRPSEHSQPPRGLHVTRVGDVGQVAASFGTWEDRNIIVAGAPAEVDAIVSALTAGGTPVDKIQRLELDNRLPTARPL
>NZ_CP009245.1|WP_075727732.1|2611924_2614483_-|ATP-dependent-chaperone-ClpB
MNAFNPTTKTSEAMQAALQQASSNGNPDIRPAHLLVAVLDQTDGIAAPVLKAAGVEPQEALKKAQALVDSYPKAQGSGMANPNFNRDALNALTAAQELAGELGDEYVSTEVLMAGIARGESDAAKMLAEMGGTYDAIKGAFTTVRGSAKVTTEDPEGQFQALEKYSTDLTKRAREGKIDPVIGRDEEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLARRIVAGDVPESLKGKTLISLDLGSMVAGAKYRGEFEERLKAVLDEIKNADGQIITFIDEIHTIVGAGATGDSAMDAGNMIKPLLARGELRLVGATTLEEYRKYIEKDAALERRFQQVYVGEPSVEDAIGILRGLKERYEVHHGVRIQDSALVAAASLSDRYITSRFLPDKAIDLVDEAASRLRMEIDSSPQEIDALERVVRRLEIEEMALAKESDAASVERLAKLRQELADEREKLGELTARWSNEKNAIDKVRGAKEELERLRQESEIAERDGDYGLVAELRYGKIPELEKEVAEAQAQVEASGGQSMLSEEVTPDTIAEVVSAWTGIPAGKMMQGETEKLLEMESYLAKRVVGQAEAVTAVSDAVRRARAGVADPNRPTGSFLFLGPTGVGKTELAKSLAEFLFDDERAMVRIDMSEYGEKHAVARLVGAPPGYVGYDQGGQLTEAVRRRPYTVVLFDEVEKAHPDVFDILLQVLDEGRLTDGQGRTVDFRNTILILTSNLGAGGTREQMMDAVKAAFKPEFVNRLDDVVIFDALSADQLTSIVDIQIEQLAARLAARRLTLDVDTDAKKWLGERGYDPAYGARPLRRLIQQAIGDTLAKKLLAGDIRDGDTVRVTLAEDGESLELARG
>NZ_CP009245.1|WP_075727730.1|2610985_2611819_-|sulfurtransferase
MGITISAHELAQEIRRGGKNTILASFWLPGEGAGHTKYNSEHIPTSLFCDPATSLSSVPSSRQGRNPLPDADTLQRAFEEWGLDVNHNVIVYDGGKGLFAARAWWILTWAGIENVRILDGGMAAWEAAGYDVVGGPGNLHGHCTRRPNPGQLPVADIDDVKSGKYLLLDTREANRYAGKKEHLDLKAGHIPGAVNVPTRELFNEDNTYRSPEELKKIFRDAGVDDPSKVIVYSGSGIHSAVAIAAMHQAGLEGAAVYIGGWSQWCANPKNPVERGTE
>NZ_CP009245.1|WP_075727752.1|2623792_2624374_-|nucleotide-exchange-factor-GrpE
MTTNPEEQAPTPDEAAEVFEDSQQQEATPADADAETTTDAAEAEAAQSAEPAANDDIEAQLAERTEDLQRVTAEYANFRRRTERDRAAVIDTAKGSVLTELLPILDDLGLAAQHGDLEGPLKSVNDKLHAVLTKFGVQPFGEAGEAFDPERHEAVQDTSTGDDKVLGLVMRQGYAHGERILRTAMVMISDPAE
>NZ_CP009245.1|WP_075727754.1|2624377_2626207_-|molecular-chaperone-DnaK
MGRAVGIDLGTTNSVVSVLEGGEPVVIANAEGARTTPSVVAFAKNGEVLVGQSAKNQAVTNVDRTIRSVKRHIGEDWTVAIDDKKYTPQEISARTLMKLKRDAEAYLGEDVTDAVITVPAYFSDAQRQATKEAGQIAGMNVLRIVNEPTAAALAYGLEKGDKEQTILVFDLGGGTFDVSLLEIGDGVVEVRATSGDNALGGDDWDQRIVDWLVEKFKSANGIDLTKDKMALQRLREAAEKAKIELSSSQSATINLPYITVDADKNPLFLDETLSRAEFQRITQDLLDRCKAPFNQVVKDAGISVGDIDHVVLVGGSTRMPAVSELVKELTGGKEPNKGVNPDEVVAVGAALQAGVLRGEVKDVLLLDVTPLSLGIETKGGVMTKLIERNTTIPTKRSETFTTAEDNQPSVQIQVFQGEREIASANKLLGSFELGGIAPAPRGVPQIEVTFDIDANGIVHVTAKDKGTGKENTIKIQDGSGLSQEEIDRMVKDAEAHAEEDKKRREEQEIRNSAESMAYQTRKFVEDNSDKLSEDRKNKVEEAAKAVDEALKGDDIEAIKTAVETLSKESQEMGSEIYAAQADEGATQADAPADDNVVDAEVVDEDEEKK
>NZ_CP009245.1|WP_075728722.1|2626589_2626826_-|PspC-domain-containing-protein
MKSHGYPADNGYVSISHPHAARLTRDTKNKMIAGVCAGLGRTYNINVTLLRVLFVASLVLPGAQVLLYAVLWAVIPRG
>NZ_CP009245.1|WP_075727756.1|2626926_2627097_-|PspC-domain-containing-protein
MRRDVANGWFFGVCAGIARTYGLNVHLVRLAFVASCLLPGPQILLYLILWMIMPAD
>NZ_CP009245.1|WP_075727758.1|2627436_2628663_+|AI-2E-family-transporter
MTSQSPSDGTVEKLDRASIIGRDGRWLASWALRFIILAIAGYIAFLGLGKVWSGLLPILLAILFCTVLWPPVRWLREHKFPPALAVLTTILGVFAAFGGIFSAMAPSVADQSKELYEKAFVGVDQLQSWIQGPPLNIRTEQVNNALDQLIVRLKSSSSDLASGVVAGVSTASEVVVTGVIALVLSFFFLKDGPKFLPWVRRVSGPTWGWHLTEVLTRTWNTLAGFIRAQAAVSLVDAIFIGIGLVLMKVPLALVLTVLTFFAGFIPIIGAISAGAISVLIALVSNGPTTAIGVLILIIAVQQLESHILSPILQSKAMDLHPVIVLLSVTVGGTLFGIIGAFLAVPVAATLAVWLRYHGDLVSLRAGEKTLEDIEVATKNGSHKHGDSAEGLEAVKSKLRSISRMEKKS
>NZ_CP009245.1|WP_084563261.1|2628776_2632016_+|(Fe-S)-binding-protein
MLDSLIASCPTITAQTMTLGLLGVLLSLPAWGYFLTGAVKLFRFVKAGRPDSFTRTDQLPTRLATLLKEVVFHTELARKPFVAAAHWLVMVGFLLGSIVWFEAYIQTFNPQGSWPIIGDTHAYHLVDELLGLGTVIGVLFLIGVRLSTRGSERNRFYGSNATAAHFVEAVVLLEGLGMLMVKAGRIATWPLLFGNPHTDFFTIQLAKLLPANATMVSVFALIKLLTGMIWLFIVGQQLRWGVAWHRFLAFFNIFLQRNPDGAPALGKLATPDLEADGPVGVGRVGDASWKMLLDSATCTECGRCQDVCPAWNTNKPLSPKKLIMAERDAALSGESAFTLVGNSIHPDELWSCTNCGACVEQCPVDIEHIDHVAALRRYQVLEEADFPQELTGLFKNLENKGNPWGRNASERRTWIDKARDRGLQVPVIGDDATMDNIEYLYWVGCAGVYDDAAQQTTIAVVELLNTAGVPFAVLGDGETCTGDPARRAGNEFLFQMLAEQNVETLNEAFDGVPRGQRKIITTCAHCFNTIRNEYPDFDGHFEVFHHTQLLNRLVREGRLTPVPRTDANRRPITYHDPCFLGRHNKVFDPPRELLGEVGPLNEAPRNKDNAMCCGAGGARMFMEEKLGTRIADARAAELRDTGAGTVAVGCPFCHTMLTGGMKATGSTNDAVDIKDVAVLMRDAVTVDGKLPKPLPLKPLQPLKREPKKADTKTAQASEPTQTPAVTSTQVSAPAAPATATTPTPPAAATPPAPGMKAPGVSTPAASAPAPGASAPVAPQAPGAAAPQAPAAPVASAPAAPQAPGAVPPAPAAPSAPQATAPAAVPPAPSAPRPPSAVAPQAPVAPGASAPTAPQAPGAAAPQAPNTAAPAPAAPTAPGAAVAPGAVPPAPTAPAAPGGSAPAAPQAPGAVPPAPAAPNAPQAATPTAVPPAPSAPRPPSAVAPQVPAAPGASAPTAPQAPGAVPPAPAAPNAPQAAAPTAVPPAPSAPRPPSAAAPAAPQAPSAAAPAPDAPTAPGAVVAPGAVPPAPAAPAAPGAVVAPGAVPPAPVAPKPSSAATPPAKRDSTTSPEDTHPSRGEEE
>NZ_CP009245.1|WP_075727760.1|2632373_2632667_+|hypothetical-protein
MTGELSQRVFPISLALLPLGAIAISLAVAIHIAVGIVVTVLCCAGFSFLHLRQERYPLRTAHFIAGISLFVVICAMSAAAIVWRSAGEGCYGIPAVV
>NZ_CP009245.1|WP_075727762.1|2632666_2633065_+|hypothetical-protein
MSSQTQASHFDHIQWRRRSAWVALAALVHLALLYGFIWLQSPLYKSAEVTTTMGLGIEISNGYFTLAIIGSYLVAGFVVISSYLGWRCKPERVFNGVFLTVYAFLIAVVFVGMFAAELLVGCLTGEGVVYLW
>NZ_CP009245.1|WP_075727766.1|2633353_2633773_+|hypothetical-protein
MSSSSGNAAFDPQLGQSGGLGGSIPPDAANAPGADHTAGFSGLLILSGVYVAVFAFTASFPVLANDTFRQFFIGPFGLRMVSFGLCSLVAITACTHVATAAPWDRGRRVLSGLLVATLSALALCGLGVLWVLQGPVAYC
>NZ_CP009245.1|WP_075727768.1|2634316_2637778_+|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MSSTRNPAAHTPLANSADLDQAVDRAVQLAHTWIDATGKQASKKEAASTEQLAAMVRNADGVAFTMDFVDRVARPEDNKVAARELANLASPLGGRANVPDEIMSTLDYLLLSSGAVVAPWVPGIAMPLARKRLRQLVGHLVLDAEGKQLNALLDRSADEGFRLNVNLLGEAVLGEAEATSRLERTVKLLQNPRVTYVSVKASSVCAQLNPWDIEGNTERLKERLRPLYRQAVSRSPHPFINLDMEEYKDLGLTVKLFKELLSEEEFLNLEAGIVLQAYLPDTFDALQELLEFAHERVKAGGAPVKVRLVKGANLSMEKVEAELHDWEQAPYFTKDDVDANYLRLMDYVLQPENADVLRVGVASQNMFTVAIAHELAKARGVERQLDIEMLQGMAPAQARAVRDVVGDLILYTPVVHSEEFDVAVSYLVRRLEENGASQNFLYALFAPEVAAADGLTPLQDQERVFRNAVANRWETFAGPNRTQDRRDEQGCSSGSVPGHFVGEPDTDPALPQNRQWAIEALAADPGAVQSPRVTDVAAVDEAVARAVAAGEQFGKKTGAERATLLDQAAEALARGRGQLITVMTHEAGKTVGEADPEVSEAIDFARYYAESARKLDNTPGMRFLSPRVVVVTPPWNFPVAIPMGGVFAALAAGASVVIKPAPQVVRCAEVAISLLREAGIGEDLVCLLNADEGEAGKRLVSHPDVDHVILTGASDTARLFTSFKPDMRLSAETSGKNAIIVTPSADPDLAVADVYKSAFGHAGQKCSAASLVILVGSMGQSKRFIGQLKDAVTSLHVGPGTDISTTMNGLIEAPGEKLKRGLTQLEPGETWLVQPKQLDAEGRLWSPGVRDGVKPGSWFHTNECFGPVLGIMRADTLEEAIEIQNTTGYGLTGGLHSLDEDEIAYWKEHVEVGNAYINRGITGAIVQRQSFGGWKDSAVGAGAKAGGPNYVPHLGRWEEVDSALLPQATITLKVAQALKELTATAGLSEQDVVWLRHAASSDAHAWATEFGVEHDPTGLVCESNVFRYRPMLEPLQVRLGRGFNMRDAIRLHLGSLLTGTRLEFTSAEETNVPGIAVNTLSDEAFAARIGARNNARVRVLGEVPAGLYDAAAKSLACILAGPALADGRRELLHQLQEQAVSHTRHRFGVVRGV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2224435 : 2291482

Corynebacterium_phage(56.25%)

tail,portal,terminase,protease,capsid,head,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075727172.1\|2224435_2225599_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_075727174.1\|2225595_2226159_-	hypothetical protein	NA	NA	NA	NA
WP_075727176.1\|2226337_2228008_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	9.8e-51	29.4
WP_075727178.1\|2228175_2229654_-	hypothetical protein	NA	NA	NA	NA
WP_075727180.1\|2229689_2230250_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_075727182.1\|2230536_2231265_+	hypothetical protein	NA	NA	NA	NA
WP_075727184.1\|2231352_2233647_-	bifunctional copper resistance protein CopD/cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_075727186.1\|2234038_2234842_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_075727188.1\|2234847_2235498_+	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	4.1e-29	37.8
WP_157108974.1\|2235775_2235940_-	hypothetical protein	NA	NA	NA	NA
WP_075727190.1\|2236288_2237020_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_084563243.1\|2237138_2238398_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_075727192.1\|2239436_2240651_-\|transposase	IS1249 family transposase	NA	NA	NA	NA
WP_075728654.1\|2240900_2241467_+	isochorismatase family protein	A0A1V0SL12	Klosneuvirus	3.3e-06	23.9
WP_075727194.1\|2241700_2241976_-	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_075727196.1\|2242194_2242683_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_075727198.1\|2243060_2243753_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_157108975.1\|2243774_2244965_+	hypothetical protein	NA	NA	NA	NA
WP_075727201.1\|2244977_2245796_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_075728656.1\|2245815_2246841_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_084563000.1\|2246921_2248031_-	iron ABC transporter permease	NA	NA	NA	NA
WP_157108976.1\|2248154_2249168_-	hypothetical protein	NA	NA	NA	NA
WP_075727205.1\|2249367_2250003_-	hypothetical protein	NA	NA	NA	NA
WP_075727207.1\|2250102_2252433_-	hypothetical protein	NA	NA	NA	NA
WP_075727209.1\|2252465_2253470_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_075727211.1\|2253728_2256020_-	hypothetical protein	NA	NA	NA	NA
WP_075727213.1\|2256479_2256908_-	holo-ACP synthase	NA	NA	NA	NA
WP_075727215.1\|2257001_2266145_-	type I polyketide synthase	NA	NA	NA	NA
WP_157108977.1\|2266715_2266892_+	hypothetical protein	NA	NA	NA	NA
WP_157108978.1\|2266888_2267101_+	hypothetical protein	NA	NA	NA	NA
WP_157108979.1\|2267680_2267857_+	hypothetical protein	NA	NA	NA	NA
WP_157108980.1\|2267853_2268069_+	hypothetical protein	NA	NA	NA	NA
WP_157108981.1\|2268114_2268483_-	hypothetical protein	NA	NA	NA	NA
WP_157108982.1\|2268502_2268664_-	hypothetical protein	NA	NA	NA	NA
WP_075727219.1\|2268891_2269236_-	hypothetical protein	NA	NA	NA	NA
WP_075727221.1\|2269235_2270009_-	N-acetylmuramoyl-L-alanine amidase	G9FH47	Rhodococcus_phage	1.8e-60	47.8
WP_075727223.1\|2270075_2270276_-	hypothetical protein	NA	NA	NA	NA
WP_157108983.1\|2270268_2270622_-	hypothetical protein	NA	NA	NA	NA
WP_075727227.1\|2270639_2271026_-	hypothetical protein	NA	NA	NA	NA
WP_157108984.1\|2271150_2273604_-	hypothetical protein	NA	NA	NA	NA
WP_075727231.1\|2273799_2274669_-	hypothetical protein	A0A1P8D5L4	Corynebacterium_phage	4.5e-23	30.2
WP_075727233.1\|2274674_2275418_-	hypothetical protein	Q37920	Corynephage	1.4e-09	27.8
WP_075727235.1\|2275434_2282310_-\|tail	phage tail tape measure protein	A0A1C9EI83	Rhodococcus_phage	1.4e-95	42.8
WP_157108985.1\|2282330_2282498_-	hypothetical protein	NA	NA	NA	NA
WP_075727239.1\|2282701_2283103_-	hypothetical protein	NA	NA	NA	NA
WP_075727241.1\|2283197_2283869_-	hypothetical protein	A0A2H4PIX5	Corynebacterium_phage	5.3e-40	38.6
WP_084563004.1\|2283891_2284275_-	hypothetical protein	A0A1W6JRI9	Corynebacterium_phage	1.1e-24	43.7
WP_075727245.1\|2284264_2284537_-	hypothetical protein	A0A2H4PIQ4	Corynebacterium_phage	7.7e-14	54.0
WP_075727249.1\|2284894_2285377_-	hypothetical protein	A0A1W6JQB2	Corynebacterium_phage	5.6e-23	39.1
WP_157108986.1\|2285397_2285565_-	hypothetical protein	NA	NA	NA	NA
WP_075727251.1\|2285570_2286794_-\|capsid	phage major capsid protein	A0A1W6JRF1	Corynebacterium_phage	3.4e-117	54.1
WP_084563245.1\|2286790_2287510_-\|head,protease	HK97 family phage prohead protease	Q9MBK0	Corynebacterium_phage	2.4e-54	66.3
WP_075727255.1\|2288285_2289527_-\|portal	phage portal protein	A0A1W6JRE1	Corynebacterium_phage	6.9e-134	57.9
WP_075728662.1\|2289552_2291016_-\|terminase	terminase	Q9MBK3	Corynebacterium_phage	5.6e-127	49.6
WP_075727257.1\|2291131_2291482_-	hypothetical protein	A0A2R4A2A4	Microbacterium_phage	9.0e-07	40.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP009245

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection