CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013908	Streptococcus agalactiae strain GBS-M002, complete genome	3 crisprs	cas3,DinG,csa3,cas9,cas1,cas2,csn2,csm6,DEDDh	2	5	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013908_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013908_1

943680-943781

TypeII

II-A

Consensus_repeat	Method
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACA	CRISPRCasFinder

1 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP013908_1

>merge|NZ_CP013908|1|943680-943781|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAAAATTAATGACGCAATTGCTAAGTCAAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACA

>NZ_CP013908|1|1|943680-943781|CRISPRCasFinder
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACA	AAAATTAATGACGCAATTGCTAAGTCAA
GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013908.1\|WP_000438314.1\|944403_944820_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP013908.1\|WP_000900526.1\|943832_944093_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013908.1\|WP_000159234.1\|933061_933433_+\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_CP013908.1\|WP_000523795.1\|935063_935801_+\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_CP013908.1\|WP_001040087.1\|937605_941718_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NZ_CP013908.1\|WP_000180007.1\|949667_950327_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224336
NZ_CP013908.1\|WP_000929489.1\|941719_942589_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP013908.1\|WP_011058334.1\|944100_944271_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013908.1\|WP_000914664.1\|933929_935060_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
NZ_CP013908.1\|WP_000665410.1\|950799_951234_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692
NZ_CP013908.1\|WP_075316602.1\|951385_954178_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|223550
NZ_CP013908.1\|WP_000323544.1\|935801_936572_+\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP013908.1\|WP_001241816.1\|933457_933838_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131381
NZ_CP013908.1\|WP_001019133.1\|944955_946788_+\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP013908.1\|WP_000653357.1\|936561_937218_+\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_CP013908.1\|WP_000590706.1\|942913_943579_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	pfam09711_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP013908.1\|WP_000621142.1\|950335_950800_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP013908.1\|WP_000122194.1\|942585_942927_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP013908.1\|WP_029662276.1\|947034_947502_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367890
NZ_CP013908.1\|WP_000251570.1\|947408_949568_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380193

Protein	Function_ID	Function_description	E-value
NZ_CP013908.1\|WP_000438314.1\|944403_944820_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	4.64422e-78
NZ_CP013908.1\|WP_000159234.1\|933061_933433_+\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	6.08694e-28
NZ_CP013908.1\|WP_000523795.1\|935063_935801_+\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	3.68196e-111
NZ_CP013908.1\|WP_001040087.1\|937605_941718_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	0
NZ_CP013908.1\|WP_000180007.1\|949667_950327_+\|HD-domain-containing-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	2.66997e-33
NZ_CP013908.1\|WP_000929489.1\|941719_942589_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.54315e-139
NZ_CP013908.1\|WP_000914664.1\|933929_935060_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
NZ_CP013908.1\|WP_000665410.1\|950799_951234_+\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	6.40832e-86
NZ_CP013908.1\|WP_075316602.1\|951385_954178_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|223550	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_CP013908.1\|WP_000323544.1\|935801_936572_+\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.19143e-132
NZ_CP013908.1\|WP_001241816.1\|933457_933838_+\|hypothetical-protein	gnl\|CDD\|131381	TIGR02328, TIGR02328, conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown. [Hypothetical proteins, Conserved].	6.45558e-80
NZ_CP013908.1\|WP_001019133.1\|944955_946788_+\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP013908.1\|WP_000653357.1\|936561_937218_+\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	9.75792e-52
NZ_CP013908.1\|WP_000590706.1\|942913_943579_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.61399e-122
NZ_CP013908.1\|WP_000621142.1\|950335_950800_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91796e-19
NZ_CP013908.1\|WP_000122194.1\|942585_942927_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.38084e-52
NZ_CP013908.1\|WP_029662276.1\|947034_947502_+\|hypothetical-protein	gnl\|CDD\|367890	pfam04270, Strep_his_triad, Streptococcal histidine triad protein. All members of this family are proteins from Streptococcal species. The proteins are characterized by having a HxxHxH motif that usually occurs multiple times throughout the protein. The histidine triad is predicted to bind metal cations, in particular Zn2+. The zinc is transferred, on the surface of the streptococcus from the Strep_his_triad protein, a zinc scavenger, to apo-ADCAII, a cell-surface lipoprotein transporter that leads to Zn2+ uptake into the bacterium.	4.91407e-07
NZ_CP013908.1\|WP_000251570.1\|947408_949568_+\|hypothetical-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	1.27191e-21

>NZ_CP013908.1|WP_000590706.1|942913_943579_+|type-II-A-CRISPR-associated-protein-Csn2
MIKINFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSLKATELMLVTDILGYDVNSAPILKLIHGDLENQFNEKPEVKSMVEKLAATITELIAFECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPRRLYDLPQYVIDKDYFLIGENMV
>NZ_CP013908.1|WP_000122194.1|942585_942927_+|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNTANNAMIGRLKVNNPKKGNITLLTVTEKQFARMVYLHGERNTSVANSDSRLVFLGDSYDQD
>NZ_CP013908.1|WP_000929489.1|941719_942589_+|type-II-CRISPR-associated-endonuclease-Cas1
MAGWRTVVVNTHSKLSYKNNHLIFKDSYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIFCDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSFFEKSQSIMNLYHDLEPFDPSNREGHAARIYFNTLFGNDFSREQDNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIIYENRQSDFVKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVIKSLNSDGNGIPEFRI
>NZ_CP013908.1|WP_001040087.1|937605_941718_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNKPYSIGLDIGTNSVGWSIITDDYKVPAKKMRVLGNTDKEYIKKNLIGALLFDGGNTAADRRLKRTARRRYTRRRNRILYLQEIFAEEMSKVDDSFFHRLEDSFLVEEDKRGSKYPIFATLQEEKDYHEKFSTIYHLRKELADKKEKADLRLIYIALAHIIKFRGHFLIEDDSFDVRNTDISKQYQDFLEIFNTTFENNDLLSQNVDVEAILTDKISKSAKKDRILAQYPNQKSTGIFAEFLKLIVGNQADFKKYFNLEDKTPLQFAKDSYDEDLENLLGQIGDEFADLFSAAKKLYDSVLLSGILTVIDLSTKAPLSASMIQRYDEHREDLKQLKQFVKASLPEKYQEIFADSSKDGYAGYIEGKTNQEAFYKYLSKLLTKQEDSENFLEKIKNEDFLRKQRTFDNGSIPHQVHLTELKAIIRRQSEYYPFLKENQDRIEKILTFRIPYYIGPLAREKSDFAWMTRKTDDSIRPWNFEDLVDKEKSAEAFIHRMTNNDFYLPEEKVLPKHSLIYEKFTVYNELTKVRYKNEQGETYFFDSNIKQEIFDGVFKEHRKVSKKKLLDFLAKEYEEFRIVDVIGLDKENKAFNASLGTYHDLEKILDKDFLDNPDNESILEDIVQTLTLFEDREMIKKRLENYKDLFTESQLKKLYRRHYTGWGRLSAKLINGIRDKESQKTILDYLIDDGRSNRNFMQLINDDGLSFKSIISKAQAGSHSDNLKEVVGELAGSPAIKKGILQSLKIVDELVKVMGYEPEQIVVEMARENQTTNQGRRNSRQRYKLLDDGVKNLASDLNGNILKEYPTDNQALQNERLFLYYLQNGRDMYTGEALDIDNLSQYDIDHIIPQAFIKDDSIDNRVLVSSAKNRGKSDDVPSLEIVKDCKVFWKKLLDAKLMSQRKYDNLTKAERGGLTSDDKARFIQRQLVETRQITKHVARILDERFNNELDSKGRRIRKVKIVTLKSNLVSNFRKEFGFYKIREVNNYHHAHDAYLNAVVAKAILTKYPQLEPEFVYGDYPKYNSYKTRKSATEKLFFYSNIMNFFKTKVTLADGTVVVKDDIEVNNDTGEIVWDKKKHFATVRKVLSYPQNNIVKKTEIQTGGFSKESILAHGNSDKLIPRKTKDIYLDPKKYGGFDSPIVAYSVLVVADIKKGKAQKLKTVTELLGITIMERSRFEKNPSAFLESKGYLNIRADKLIILPKYSLFELENGRRRLLASAGELQKGNELALPTQFMKFLYLASRYNESKGKPEEIEKKQEFVNQHVSYFDDILQLINDFSKRVILADANLEKINKLYQDNKENISVDELANNIINLFTFTSLGAPAAFKFFDKIVDRKRYTSTKEVLNSTLIHQSITGLYETRIDLGKLGED
>NZ_CP013908.1|WP_000653357.1|936561_937218_+|TIGR01906-family-membrane-protein
MKDKLLVVLTWIWIISLATLATIYIAWLIYPIEIQFLKLEKVVYLKAETIYYNFNKLMIYLTHPFISDLNMPSFPSSEDGLKHFADVKYLFTLAHGLFVILTFPVIYFLRRGWKQKSIFLYEGFFKIAIMLPIFIVVCAFLLGFDQFFTLFHEVLFPGDSTWQFNPLTDPVIWILPETFFLHCFIIFLLIYETITIILLIIGRKHLKLRKYKNKMQAL
>NZ_CP013908.1|WP_000323544.1|935801_936572_+|TIGR01457-family-HAD-type-hydrolase
MAYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFNEG
>NZ_CP013908.1|WP_000523795.1|935063_935801_+|acyl-ACP-thioesterase
MGLLYRETYEVPFYESDTNHYMKLPQLLALALQISAKQSLKLGIGDDIVFKRYGLVWVVTDYIIDIERLPKHAEKIVIETEAKAHNKLLCYRYFYIYGEDGQKIITISSAFVLMDFKTRKIHPVLDDITSIYQSQRIKKVIRGPKYHPIGDSKVKQYHVRYFDLDMNGHVNNSKYLEWMYDVLDLDFLSSHIPKKIDLKYIKEIQYGTDIKSHWYQDGLVTRHDIIGGDAIHAQARIEWQEKKED
>NZ_CP013908.1|WP_000914664.1|933929_935060_+|oxygen-independent-coproporphyrinogen-III-oxidase
MLKKPTSAYVHIPFCTQICYYCDFSKVFIKNQPVDAYLQALIREFRSYDITELRTLYIGGGTPTSISAVQLDYLLTELSRDLNLNTLEEFTIEANPGDLTVDKIEVLQKSAVNRVSLGVQTFNDKHLKRIGRSHNEAQIYSTIDALKTAGFQNISIDLIYALPGQTMDDVRSNVAKALSLNIPHLSLYSLILEHHTVFMNKMRRGKLHLPTEDLEAEMFEYIISEMERNGFEHYEISNFTKPGFESRHNLMYWDNVEYYGVGAGASGYLDGIRYRNRGPIQHYLKGVSEGNARLSEEVLSKNEMMEEELFLGLRKKEGVSIGKFEQKFGTSFEKRYGQIVQELQSDGLLKENNGFIQMTKKGLFLGDTVAEKFIVE
>NZ_CP013908.1|WP_001241816.1|933457_933838_+|hypothetical-protein
MRLWHQDIIELLPRQQLLGQHRECCALRGNGWGRKHETVDYVFRYSPYRLFAYHQLVMEEMMERGYRVSKEWLIAEYRGMKCPRYDTLNPVDLETPIYPEHNQDYLQECLWNLKAKGIDLPINKIK
>NZ_CP013908.1|WP_000159234.1|933061_933433_+|YbgA-family-protein
MTKEAELLWAKHKYLVLSKSQKIYLDIRQTLKSPNCTVLDVQSLIDQAVLLEESPSQVTNAYMHIWGYFKNKAERQEKEEFLTLLEKYRKTGYQRRKLLAFLKQLLAKYPNSYLQNSSIFEEE
>NZ_CP013908.1|WP_000900526.1|943832_944093_+|hypothetical-protein
MLGHHCGVLVFCYTEINFQRMWGKAVIRLIQDVIQNLVGQANEITPIYQFDWETYILATKKYERHLEVCLLVENSNCFSDSKRMCQ
>NZ_CP013908.1|WP_011058334.1|944100_944271_+|hypothetical-protein
MKGYNSNLMVKGLGCSTLYLIISLTALVLLVIAGVFFVINTCKLTRKAVENLSIIN
>NZ_CP013908.1|WP_000438314.1|944403_944820_+|nucleoside-diphosphate-kinase
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRYADADILKRHYAELTDRPFFPTLVDYMTSGPVIIGVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
>NZ_CP013908.1|WP_001019133.1|944955_946788_+|elongation-factor-4
MNIEDLKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRAEVEDVIGLDASEAVLASAKAGIGIEEILEQIVEKVPAPTGEVDAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQMMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTITLANNPAIEPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTRVDSIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDDNRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRRSQLVKMDILLNGDKVDALSFIVHKEFAYERGKLIVDKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDDKK
>NZ_CP013908.1|WP_029662276.1|947034_947502_+|hypothetical-protein
MKGQKIIALAGLVLSCHFALTACHTQEHKNSHHIKTKQVAKKKANKKKVSVKESHKKRKGVAGVDFPTDDGFLLTKDSKILSHTDSGIVVAHGNHSHFIFYSDLKGSKFSYLIPQILFQKMLMATWSDMVIISTIFQKQVYLSKSKYKQVELFHV
>NZ_CP013908.1|WP_000251570.1|947408_949568_+|hypothetical-protein
MVRHGDHFHYIPKASLSQQKQVQASRAVSRLGNQSNSHYRVNSSKIAGLHYPTSNGFLFNGRGIKGTTPTGILVEHHNHLHFISFADLRKGGWGSIADRYQPQKKADSKKQSPSSKKPRTENTLPKDIKDKLAYLARELHLDISRIRVLKTLNGEIGFEYPHDDHTHVIMAKDIDLSKPIPNPHHDDEDHHKGHHHDESDHKHEEHEHTKSNKLSDEDQKKLIYLAEKLGLNPNQIEVLTSEDGSIIFKYPHDDHSHTIASKDIEIGKPIPDGHHDHSHAKDKVGMATLKQIGFDDEIIQDILHADAPTPFPSNETNPEKMRQWLATVTKINIGQRTNPFQRFGLSLMPNIEVLGIGFTPINDMTPVLQFKKLKQLWMTNTGITDYSFLDKMPLLEGLDISQNGIKDLSFLTKYKQLSLIAAANNGITSLKPLAELPNLQFLVLSHNNISDLTPLSNLTKLQELHLDHNNVKNLSALSGKKDLKVLDLSNNKSADLSTLKTTSLETLLLNETNTSNLSFLKQNPKVSNLTINNAKLASLDGIEESDEIVKVEAEGNQIKSLVLKNKQGSLKFLNVTNNQLTSLEGVNNYTSLETLSVSKNKLESLDIKTPNKTVTNLDFSHNNVPTSQLKLNEKNIPEAVAKNFPAVVEGSMVGNGSLAEKAAMASKEDKQVSDNTNHQKNTEKSAQANADSKKENPKTHDEHHDHEETDHAHVGHHHH
>NZ_CP013908.1|WP_000180007.1|949667_950327_+|HD-domain-containing-protein
MTMVKREDVILNATENMVHHKLKNDPSGHDWFHIVRVRNLAVELAHKEGANTFICQMAALLHDIIDDKICQDSKQASYELTQWLYSQDLAIAEVEHILDILENISFKAGTGLTMKTLEGQIVQDADRLDAMGAIGIARTMAYSGSKGRLIHDPNLKPRENLTLEEYRNGQDTAIMHFYEKLLKLKDLMNTKQGKMLAQKRHDFLELYLAEFYAEWNGKR
>NZ_CP013908.1|WP_000621142.1|950335_950800_+|GNAT-family-N-acetyltransferase
MIRRAKEKDLPDIAELLKQILMLHHEVRPDIFHTRGSKFSKEQLKEMLIDESKPIFVYESDEGKVVAHLFLQLQEKRDLPRKSFKTLYIDDLCIDEEVRGQQIGQKLMDFARQYAKKHGCYNITLNVWNDNQRAVSFYEKLGFKPQQTQMEEIL
>NZ_CP013908.1|WP_000665410.1|950799_951234_+|peptide-methionine-(R)-S-oxide-reductase-MsrB
MKETQEELRQRIGHTAYQVTQNSATEHAFTGKYDDFFEEGIYVDIVSGEVLFSSLDKFQSGCGWPAFSKPIENRMVTNHQDHSHGMHRIEVRSRQADSHLGHVFNDGPVDAGGLRYCINSAALDFIPYDQMAKRGYGDYLSLFD
>NZ_CP013908.1|WP_075316602.1|951385_954178_+|cation-transporting-P-type-ATPase
MASTNNVSDTNTRFAKEELEEVFEELGTTQGGLSDEEVAVRQKKYGLNLLSEVKQESIILLFLKNFTSLMAILLWVGGFVAIVSNSLELGLAIWMVNVINGIFSFIQEYRASQATQALEKMLPSYSRVLRKSSEEKILSEQLVPGDIVLIEEGDRISADGRLIKTTDLQVNQSALTGESNPIYKDSNVENDQSKTLIECDNMVFAGTTVSSGSATMVVTAIGMQTQFGQIADLTQGMKSEKSPLQRELDRLTKQISIISITVGIIFFLAATFFVKEPVSKSFIFALGMIVAFIPEGLLPTVTLSLAMAVQRMAKEHALVKKLSSVETLGATSVICSDKTGTLTQNEMTVNHLWQNGKSYQVTGLGYAPEGQILFEGDNICFGNSDRGDLEKLIRFAHLCSNAQVLPPNDDRSTYTVLGDPTEACLNVLLEKSGINIQENRKFAPRLKELPFDSVRKRMTTIHSLGGDEKDKKISITKGAPKEILDLSDYVLSDGKVIPLNKEERNKIQLANDTFAKDGVRVLAVSYCDIEGFSKEQWTQENLEQHMVFIGLIAMSDPPREGVREAIDKCHAASIRIIMVTGDYGLTALSIAKNIGIIRNDDAKVISGLELSEMTDSQLKKELSGEVVFARVAPEQKYRVVTILQEMGEVVAVTGDGVNDAPALKKSDIGVAMGVTGTDVAKESADMILTDDHFASIVHAVEEGRAVYQNIKKFLTYIFNSNTPEAVPSAFFLFSKGFIPLPLTVMQILAVDLGTDMLPALGLGVEPPETDVMNRPPRRLTDRLLDKGLLIKSFLWYGTIESVLAMGGFFWAHYLRYGNFTFFVANGIPYREATTMTLGAIIFSQIGMVMNSRTSYQSIKALSIFGNKLINFGIIMEILAFLVLVYVPLFHNLFNTASLGLSHWLYLISCPFIMIGLDEVRKLFSSRKNKR

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Crispr_ID: NZ_CP013908_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013908_2

1428907-1430384

Orphan

Consensus_repeat	Method
GTTGANGCGCTNGTNCTNGCTGANGT	CRT

23 spacers

The CRISPR arrays of NZ_CP013908_2

>merge|NZ_CP013908|2|1428907-1430384|CRT
GTTGAGACGCTGGTGCTGGCTGACGTCGTGGCACTCATTGAAGCGCTAGTGCTGGCTGACATTGACGCACTCGTTGAAGCGCTGGTGCTGGCTGACGTCGACGCACTCATTGAAGCGCTAGTGCTGGCTGACATCGAGGCACTTGTTGAAGAACTTGTGCTGGCTGACATTGACGCACTCGTTGAGGCGCTAGTGCTAGCTGACGTCGAGGCACTCATTGAAGCGCTAGTGCTGGCTGACATCGAGGCACTTGTTGAAGAACTTGTGCTGGCTGACATTGACGCACTCGTTGAGGCGCTAGTGCTGGCTGACGTCGACGCACTCATGGAAGCACTTGTGCTGGCTGACGTCGAGGCACTCATTGAGGCGCTAGTGCTGGCTGATGTCGATGCACTGGTACTTGCTGACGTGGAAGAACTTGTACTTGCCGATGTTGAGGCGCTAGTACTTGCTGATGTGGAAGCACTCGTACTTGCACTTGTGGAAGCGCTGGTACTTGCTGATGTCGATGCACTCATTGAGGCGCTAGTACTTGCACTTGTGGAAGCGCTAGTACTTGCACTTGTTGAGGCGCTCATACTTGCTGAGGTGGAAGCACTGGTACTGGCACTGGTTGAGGCGCTAGTACTGGCTGACATTGAGGCGCTAGTACTTGCTGACGTGGATGCACTCATTGAGGCGCTAGTGCTGGCTGACGTCGAGGCACTCATTGAAGCACTTGTGCTGGCTGACATCGACGCACTCATTGAGGCGCTAGTGCTGGCTGATGTGGAAGCACTGGTTGAAGCACTGGTTGAAGCACTGGTTGAGGCGCTGGTGCTGGCTGACGTGGATGCGCTCATACTTGCTGATGTGGATGCACTGGTACTTGCTGACGTGGAAGCGCTAGTACTTGTTGACGTCGAGGCACTGGTACTGGCACTTGTTGAAGCACTAGTACTTGCACTGGTTGAGGCGCTCATACTTGCACTTGTGGAAGCGCTAGTACTTGCACTTGTTGAGGCGCTCATACTTGCTGAGGTGGAAGCACTGGTTGAAGCACTGGTTGAAGCACTGGTTGAGGCGCTAGTGCTGGCTGACGTCGAGGCACTCATTGAAGTACTTGTGCTGGCTGACATCGACGCACTCATTGAGGCGCTAGTGCTGGCTGATGTGGAAGCACTGGTTGAAGCACTGGTTGAGGCGCTGGTGCTGGCTGACGTTGAGGCGCTAGTGCTGGCTGACGTTGAGGCACTCGTTGAGGCGCTGGTGCTGGCACTTGTGGAAGCGCTAGTACTTGCTGACGTGGATGCACTCGTACTTGCACTTGTTGAAGCACTCATACTTGCACTTGTTGAAGCACTTGTGCTGGCTGATGTCGAGGCACTCGTTGAGGTGCTGGTTGAAGCGCTGGTGCTGGCTGACGTCGACGCACTCATGGAAGCGCTGGTACTTGCTGATGTCGAGGCACTCATGGAAGCGCTGGTACTTGCTGATGT

>NZ_CP013908|2|1|1428907-1430384|CRT
GTTGAGACGCTGGTGCTGGCTGACGT	CGTGGCACTCATTGAAGCGCTAGTGCTGGCTGACATTGACGCACTC
GTTGAAGCGCTGGTGCTGGCTGACGT	CGACGCACTCATTGAAGCGCTAGTGCTGGCTGACATCGAGGCACTT
GTTGAAGAACTTGTGCTGGCTGACAT	TGACGCACTCGTTGAGGCGCTAGTGCTAGCTGACGTCGAGGCACTC
ATTGAAGCGCTAGTGCTGGCTGACAT	CGAGGCACTTGTTGAAGAACTTGTGCTGGCTGACATTGACGCACTC
GTTGAGGCGCTAGTGCTGGCTGACGT	CGACGCACTCATGGAAGCACTTGTGCTGGCTGACGTCGAGGCACTC
ATTGAGGCGCTAGTGCTGGCTGATGT	CGATGCACTGGTACTTGCTGACGTGGAAGAACTTGTACTTGCCGAT
GTTGAGGCGCTAGTACTTGCTGATGT	GGAAGCACTCGTACTTGCACTT
GTGGAAGCGCTGGTACTTGCTGATGT	CGATGCACTCATTGAGGCGCTAGTACTTGCACTTGTGGAAGCGCTAGTACTTGCACTT
GTTGAGGCGCTCATACTTGCTGAGGT	GGAAGCACTGGTACTGGCACTG
GTTGAGGCGCTAGTACTGGCTGACAT	TGAGGCGCTAGTACTTGCTGACGTGGATGCACTC
ATTGAGGCGCTAGTGCTGGCTGACGT	CGAGGCACTCATTGAAGCACTTGTGCTGGCTGACATCGACGCACTC
ATTGAGGCGCTAGTGCTGGCTGATGT	GGAAGCACTGGTTGAAGCACTGGTTGAAGCACTG
GTTGAGGCGCTGGTGCTGGCTGACGT	GGATGCGCTCATACTTGCTGAT
GTGGATGCACTGGTACTTGCTGACGT	GGAAGCGCTAGTACTTGTTGAC
GTCGAGGCACTGGTACTGGCACTTGT	TGAAGCACTAGTACTTGCACTG
GTTGAGGCGCTCATACTTGCACTTGT	GGAAGCGCTAGTACTTGCACTT
GTTGAGGCGCTCATACTTGCTGAGGT	GGAAGCACTGGTTGAAGCACTGGTTGAAGCACTG
GTTGAGGCGCTAGTGCTGGCTGACGT	CGAGGCACTCATTGAAGTACTTGTGCTGGCTGACATCGACGCACTC
ATTGAGGCGCTAGTGCTGGCTGATGT	GGAAGCACTGGTTGAAGCACTGGTTGAGGCGCTGGTGCTGGCTGAC
GTTGAGGCGCTAGTGCTGGCTGACGT	TGAGGCACTCGTTGAGGCGCTGGTGCTGGCACTT
GTGGAAGCGCTAGTACTTGCTGACGT	GGATGCACTCGTACTTGCACTTGTTGAAGCACTCATACTTGCACTT
GTTGAAGCACTTGTGCTGGCTGATGT	CGAGGCACTCGTTGAGGTGCTG
GTTGAAGCGCTGGTGCTGGCTGACGT	CGACGCACTCATGGAAGCGCTGGTACTTGCTGATGTCGAGGCACTC
ATGGAAGCGCTGGTACTTGCTGATGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013908.1\|WP_000244035.1\|1442877_1444119_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
NZ_CP013908.1\|WP_001042316.1\|1436396_1437317_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013908.1\|WP_001865283.1\|1424911_1426153_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|133037
NZ_CP013908.1\|WP_000656279.1\|1440571_1440922_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013908.1\|WP_000681005.1\|1437499_1439683_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270337
NZ_CP013908.1\|WP_000865325.1\|1444153_1444732_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|368653
NZ_CP013908.1\|WP_000061665.1\|1441197_1442511_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237046
NZ_CP013908.1\|WP_000502594.1\|1441013_1441172_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013908.1\|WP_000468350.1\|1418715_1420260_-\|accessory-Sec-system-protein-Asp1	unknown	unknown	gnl\|CDD\|293598
NZ_CP013908.1\|WP_000104405.1\|1416160_1417153_-\|accessory-Sec-system-protein-Asp3	unknown	unknown	gnl\|CDD\|163423
NZ_CP013908.1\|WP_075316641.1\|1417149_1418688_-\|accessory-Sec-system-protein-Asp2	unknown	unknown	gnl\|CDD\|274739
NZ_CP013908.1\|WP_000751408.1\|1426149_1427355_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|133037
NZ_CP013908.1\|WP_000818887.1\|1439682_1440423_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP013908.1\|WP_000567072.1\|1434344_1436336_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP013908.1\|WP_000863865.1\|1442571_1442700_-\|DUF4044-domain-containing-protein	unknown	unknown	gnl\|CDD\|338651
NZ_CP013908.1\|WP_001263851.1\|1421612_1422809_-\|SP_1767-family-glycosyltransferase	unknown	unknown	gnl\|CDD\|163440
NZ_CP013908.1\|WP_000795050.1\|1423737_1424922_-\|glycosyl-transferase-family-8	unknown	unknown	gnl\|CDD\|133037
NZ_CP013908.1\|WP_000772257.1\|1420259_1421489_-\|accessory-Sec-system-protein-translocase-subunit-SecY2	unknown	unknown	gnl\|CDD\|237095
NZ_CP013908.1\|WP_075316616.1\|1422869_1423757_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP013908.1\|WP_001263776.1\|1427363_1428371_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|236626

Protein	Function_ID	Function_description	E-value
NZ_CP013908.1\|WP_000244035.1\|1442877_1444119_+\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
NZ_CP013908.1\|WP_001042316.1\|1436396_1437317_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.55469e-11
NZ_CP013908.1\|WP_001865283.1\|1424911_1426153_-\|glycosyl-transferase	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	4.60076e-75
NZ_CP013908.1\|WP_000681005.1\|1437499_1439683_+\|ABC-transporter-permease-subunit	gnl\|CDD\|270337	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily. Periplasmic glutamine binding domain GlnP serves as an initial receptor in the ABC transport of glutamine in eubacteria. GlnP belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.85761e-106
NZ_CP013908.1\|WP_000865325.1\|1444153_1444732_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|368653	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP). This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.	0.00125171
NZ_CP013908.1\|WP_000061665.1\|1441197_1442511_-\|GTPase-ObgE	gnl\|CDD\|237046	PRK12297, obgE, GTPase CgtA; Reviewed.	0
NZ_CP013908.1\|WP_000468350.1\|1418715_1420260_-\|accessory-Sec-system-protein-Asp1	gnl\|CDD\|293598	pfam16993, Asp1, Accessory Sec system protein Asp1. Asp1, along with SecY2, SecA2, and other proteins forms part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. Asp1 is predicted to be cytosolic.	0
NZ_CP013908.1\|WP_000104405.1\|1416160_1417153_-\|accessory-Sec-system-protein-Asp3	gnl\|CDD\|163423	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	7.04012e-61
NZ_CP013908.1\|WP_075316641.1\|1417149_1418688_-\|accessory-Sec-system-protein-Asp2	gnl\|CDD\|274739	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP013908.1\|WP_000751408.1\|1426149_1427355_-\|glycosyl-transferase	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	2.10249e-70
NZ_CP013908.1\|WP_000818887.1\|1439682_1440423_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.4733e-157
NZ_CP013908.1\|WP_000567072.1\|1434344_1436336_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP013908.1\|WP_000863865.1\|1442571_1442700_-\|DUF4044-domain-containing-protein	gnl\|CDD\|338651	pfam13253, DUF4044, Protein of unknown function (DUF4044). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 42 and 56 amino acids in length. There is a single completely conserved residue M that may be functionally important.	1.85741e-06
NZ_CP013908.1\|WP_001263851.1\|1421612_1422809_-\|SP_1767-family-glycosyltransferase	gnl\|CDD\|163440	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.	1.6115e-160
NZ_CP013908.1\|WP_000795050.1\|1423737_1424922_-\|glycosyl-transferase-family-8	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	2.05657e-73
NZ_CP013908.1\|WP_000772257.1\|1420259_1421489_-\|accessory-Sec-system-protein-translocase-subunit-SecY2	gnl\|CDD\|237095	PRK12417, secY, preprotein translocase subunit SecY; Reviewed.	1.15376e-161
NZ_CP013908.1\|WP_075316616.1\|1422869_1423757_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	4.6233e-33
NZ_CP013908.1\|WP_001263776.1\|1427363_1428371_-\|sugar-transferase	gnl\|CDD\|236626	PRK09814, PRK09814, sugar transferase.	1.32907e-150

>NZ_CP013908.1|WP_001263776.1|1427363_1428371_-|sugar-transferase
MRVHITSIYGQSPRSIALISQKLVKDVGRQLGYDEMGIYFYNDHAETHGERSTRMDGIIAGLGRGDIVVFQVPTWNSTEFDELFLDKLQAYGARIITFVHDIVPLMFESNFYLLDRVIDMYNRSDVVILPTKAMHDYLIEKGMTTSKVLYQEVWDHPVNIDLPRPECQKVLSFAGDIQRFPFVNDWKENIPLIYYGDGSRLNSEANVHAQGWKDDVELMLSLSKRGGFGLCWSEDREELVERRYSRMNASYKLSTFLAAGLPIIANHDISSRDFIKQHGLGFTVETLEEAVEKINNMEKETYDSYVENVEKIATLLRNGYITKKLLIDAVHMLYR
>NZ_CP013908.1|WP_000751408.1|1426149_1427355_-|glycosyl-transferase
MKKTIVLGADFQYRDQVMTTIKSIVSHNQHLTIYIINTDFPVEWFNILNHSLEQFDCRVKNIPISSDVFEGIPTLSHISVAGFFRWFIPIHLEEEIVLYLDSDVIVRGSLDPLFDINLEENLLGAVADHFSTLYYGDTAPVSFNSGVMLINNSLWKKEEIYNSLMRIADKGSAVGVGDQEYLNILTQNRWIDIGKQYNVQIGQDVNINAYGRPDLYHFYDDCEPVIVHYNSQDKPWNKYSQSRYRSEWWYYFGLEWSVIYAQQQKNLNRLTGKTLNLFTLTASDTLEHIEVLAKALPDYQFHIAARSDISEKLANLETYSNIKVYKLVINPILEELIRNCDVYLDINHSYEVEGILDKIKEENKPILAFDSTAHTTKNIEVISETMPELMVKRIREVGPLR
>NZ_CP013908.1|WP_001865283.1|1424911_1426153_-|glycosyl-transferase
MKNRKAIALAADFGYQEQVKTIIKSICFHNQFIDFYILNDDFPVEWFQMMEYHLSKMDCTISNTKIFNEEIKHFKFQKPMPYPTYFRYFIPEVIHEDKVLYLDCDMIITSDLTSIFTLDISKYGVAAVRDDLLEEYDGKEDYFNSGLLLINNIFWREQGISQRLLDYTRENQGALQYHDQDVLNDVLCDNWLELDETYNYHTGADMLYNLFQQSERQLNRRKDLPKVIHYTATKPWKYLETSVRWRDIWWEYNRLEWRDIFTRWQVNDGVDVSLKKVLQPIHRAFIFTYSDSIEGIERLAKDLPNWQFHIAAYTQISEKLKQLEMHSNIKLYPLVYRFKLNELVENSDIYLDINHGDADTQVLEQVKKLGKDILSLSTTYHGQGKQFERVTDIIDYLKNERFKEHIRKEYCEK
>NZ_CP013908.1|WP_000795050.1|1423737_1424922_-|glycosyl-transferase-family-8
MKNNVICLAGDNKSLNQIQTVIKSILCHNDRVSIYILNQDIASEWFRNIQRRLLNSHSCIFDIKLFDDTFKEFKTPRAHITYMAYARYYIPQLIDAEKVLYLDIDTLVVDNLDKLFEIELGDYPIAAILDGDGIHFNSGVMLINSLYWMRYRVTEKLLEITERELDNGIFGDQGVLNLLFDNNWLKLEDKYNAQVGNDLGAFYENWQGYFDRNFESPTIIHYCTHDKPWNTFSSSRFRETWWQYEQLDWNEVFNFETYLLPEPTFEKHFFTFTTSVDLLYIEELVELFPNSCFHIAAWTSFGPRLLKLATNSNVRLYPSITSPLFEQLMTKANYYLDISTSWKEIQFCQKAIEKSIPILSFNEAVTFEYRELSHCFINLEDMRQFLCKNGGNSD
>NZ_CP013908.1|WP_075316616.1|1422869_1423757_-|glycosyltransferase-family-2-protein
MEAIVTDKLVSVIIPVYNAAPYLEGCVNTILGQTYQVFEILLIDDGSTDTSASICDQLSLRDNRIRVFHIENGGASKARNFGLARISPESQFVTFVDSDDWVKENYLEVLLAQQEKYNADIVISNYYIYRETEDIFGYYITDKDFVIEEISAQTAIDRQVHWHLNSSVFIVIWGKLYRRELFDTITFPIDKVFEDELVSVLLFIKSKKTILVNGSYYGYRIRPNSIMTSAFSSKIAEDLIYIFDSKLSEIILSGLDSTATVERYFWLMRDYKQRLEQENLQKTIIYKVISNRLSR
>NZ_CP013908.1|WP_001263851.1|1421612_1422809_-|SP_1767-family-glycosyltransferase
MRVIKVKTISETLDYISKHTASVARFGDGEIDIIAGNSIPYQVYDSELAKRLERLLNRQSNEKLVICVSDVFDNLGRYNDFSQQFWRDHLYQYNDLYQKNCQAEWYGSTFISRPYMDLLDKSLSVTYFEQLKALWKNKDILIVEGETSRSGVGNDLFNDANTISRIICPSKDAFSSFYEIKETILEHSRGKLILLMLGPTAKLLAEDLSQLGHQAIDLGHIDSEYEWFKMGAVSKVKLSHKHTAEHNFDEDITLIEDNSYENQIVSKIGTSDRQYALTVTLTDDIWELEHLLQRCPNTNFHIAAPVYCSDRLKQLVGYPNYYLHEAITEEQFEVLLLNSDIYLDINHGEEVWNIVDRCITEGKTIYGIRRARKDNQYISFERTMDDFEYLCDTIKQNR
>NZ_CP013908.1|WP_000772257.1|1420259_1421489_-|accessory-Sec-system-protein-translocase-subunit-SecY2
MKLLYIFEKNIILRKILITFSLIIIFLLGRYVPIPGVLISAYKGQDNNFATLYSTVTGGNLSQVGVFSLGIGPMMTTMILLRLFTIGKYSSGVSQKVQQFRQNVVMLVIAIIQGLAIAISFQYHNGFSLTKLLLATMILVTGAYIISWIGNLNAEYGFGGMTILVVVGMLVGQFNNIPLIFELFQDGYQLAIILFLLWTLVAMYLMITFERSEYRIPVMRTSIHNRLVDDAYMPIKVNASGGMAFMYVYTLLMFPQYIIILLRSIFPTNPDITSYNDYFSLSSIQGVVIYMILMLVLSVAFTFVNIDPTKISEAMRESGDFIPNYRPGKETQSYLSKICYLFGTFSGFFMAFLGGVPLLFALGNDDLRTVSSMTGIFMMITGMSFMILDEFQVIRIRKQYTSVFENEEN
>NZ_CP013908.1|WP_000468350.1|1418715_1420260_-|accessory-Sec-system-protein-Asp1
MFHFIPSWYNENRTWYDNNYLWYFKPTNVGFDDTINQMKMFDYAGKESRLVVLNYMPNLRYYLHRYDLLESGYYSVFDDIQEIGNVRQQMIDFRQLNWPEGVDFTYTPFIVLVKKSGDLIAKVQFGEEGNLTHIDYFANEQIAKKYLFDDRGFLSSILYYDNGGEAYQDYLAPSGERIMREYLREGDHHVEINPKKAIHFLKLSYSDIEELIREKYLTYLHKEVSKSDTIIVSFNQVHNAFIVGNTSKGNLILSVFSERNNAHNVLEDYSSLSRANAIICDRLDIAAQLKEKIDKPVVHVSPFDTRLALGKSNQVRDLEIYFVVDRLSHKELQKSLTSLYKVMLKNNDIKVTFVSYEREFESRQLTYDYLKEATKVFDQKFFSLSDDDANQVLMQSDEVEKEKTRLSFTHPLSETDIINRLEYVRLIIDISKIPDLYTQIAGISSGIPQINTILTEFVEHRKNGYVIEEIQELEKAIPYYCEQLTNWNRSLIYSIDKINDYTGGQLVERIINSY
>NZ_CP013908.1|WP_075316641.1|1417149_1418688_-|accessory-Sec-system-protein-Asp2
MLQVGEENWATKENIPNNMEWLFIKPDQISDFVTTENNYLTSSKLLQKLPRKISALLLTEQTYGPELSSLSSFFEVYEVFYPKDKHATGITEEFLRSKMAQRYDSSSPDQLIRQFYKGLFIGQYGEKLQVSQIQIRNDFEGVVNYQGNNYLELEGQFGENYSFLLNFAYNIPFSSDFYNELFLEHIIEGDIDIRLVISLIVDGSVDDIAKEWYFEKEDLNQLISLESDISGSLAVKLFAKGKGIVKLGPLHRRNGRGGLGTFLLGGERHIDAIGHEFMTYFDPVDFKPPLTVYFSGFRSAEGFEGFWMMKSMKTPFMLICDPRLQGGAFYIGSKEYEQKIVDAIQEKLAFLNFSSDQLILSGLSMGTYGATYHGAKLNPHAIIIGKPIFNLGTVAQRERLERPDGFATSLDIQLLNQGDLTSSSSEKLNNYFWKSIEEGDFSNTTFALAYMKNDDYDATAFSDLLQYFRGKKHKILGRGWDGRHGDCSAEVGAWFTSQYRRMLSNDFGRKEE
>NZ_CP013908.1|WP_000104405.1|1416160_1417153_-|accessory-Sec-system-protein-Asp3
MSTISYIYWDDFSRFSYNFGTKLQFLGKSVCFENPLAPSSTNLYTWSSQTNYQSKRISPNLPLLRKGTRYSLSLNAELDLVSSLFVRIEFYNRFNESVGFELLKKDSIIFIYPKEAYTYTISLINAGCSDFTFHYLKLEEVTDSVIQEKNLSTEFTIEEHQDVLNLLLVEKKDSVYINKIESISQLQQKVELVSNPSLNSDSLILPKLEKGLEDALKVFPNIKINVIAYGTQGNFAALYYAKKFPRITAYINDCFAPFGILLKSLPHLTAKQQIFLREVWDTRETSPNVKHYGLVSENSSLNLVSMILSGNEHLPYLTLLKKQDDNYDSL
>NZ_CP013908.1|WP_000567072.1|1434344_1436336_-|excinuclease-ABC-subunit-B
MIDRKDTNRFKLVSKYSPSGDQPQAIETLVDNIEGGEKAQILKGATGTGKTYTMSQVIAQVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGQEISRDQLLNNLVDIQFERNDIDFQRGKFRVRGDVVEVFPASRDEHAFRIEFFGDEIDRIREIESLTGRVLGEVEHLAIFPATHFMTNDEHMEEAISKIQAEMENQVELFEKEGKLIEAQRIRQRTEYDIEMLREMGYTNGVENYSRHMDGRSEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEMEQTDTVVEQIIRPTGLLDPEVEVRPSMGQMDDLLGEINLRTEKGERTFITTLTKRMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSNGHVIMYADKITDSMQRAMDETARRRRLQMDYNEKHGIVPQTIKKEIRDLIAITKSNDSDKPEKVVDYSSLSKKERQAEIKALQQQMQEAAELLDFELAAQIRDVILELKAID
>NZ_CP013908.1|WP_001042316.1|1436396_1437317_-|CPBP-family-intramembrane-metalloprotease
MNKRILNSQFAVYKNWPSWLLLLFACFMVYLFFFVGLTLGGVGIVLVSSVLYKFSSYTFFEFINLFNNIYGELGTFSFSAFLLLIWVKFVEKRPFSELGFSTKFKRTLWSLIKGWSIGFILFSISVITAYILGGLDFHSYDVSKATIFYVVTLLPFWLIQSGTEELLTRGWLLPLINHRFHLAVAIGVSSTLFGILHLVNAHVTFLSIVSIICSGVLMSLYMIKSGNIWSVAALHGAWNFSQGNLYGIAVSGQKAGASLLHFTVKENAPDWISGGAFGIEGSLISIFVLLAAIIYLLWLIKTEETD
>NZ_CP013908.1|WP_000681005.1|1437499_1439683_+|ABC-transporter-permease-subunit
MKHKLKAFTLALLSIFFVFGGKVSAETVNIVSDTAYAPFEFKDSDQTYKGIDVDIVNEVAKRAGWNVNMTYPGFDAAVNAVQSGQADALMAGTTVTEARKKVFNFSDTYYDTSVILYTKNNNKVTNYKQLKGKVVGVKNGTAAQSFLEENKSKYGYKVKTFDTSDLMNNSLDSGSIYAAMDDQPVVQFAINQGKAYAINMEGEAVGSFAFAVKKGSGHDNLIKEFNTAFAQMKSDGTYNDIMDKWLGKDATKTSGKATGNANEKATPVKPSYKIVSDSSFAPFEYQNGKGKYTGFDMELIKKIAKQQGFKLDISNPGFDAALNAVQSGQADGVIAGATITEARQKIFDFSDPYYTSSVILAVKKGSNVKSYQDLKGKTVGAKNGTASYTWLSDHADKYNYHVKAFDEASTMYDSMNSGSIDALMDDEAVLAYAINQGRKFETPIKGEKSGDIGFAVKKGANPELIKMFNNGLASLKKSGEYDKLVKKYLSTASTSSNDKAAKPVDESTILGLISNNYKQLLSGIGTTLSLTLISFAIAMVIGIIFGMMSVSPSNTLRTISMIFVDIVRGIPLMIVAAFIFWGIPNLIESITGHQSPINDFVAATIALSLNGGAYIAEIVRGGIEAVPSGQMEASRSLGISYGKTMQKVILPQAVRLMLPNFINQFVISLKDTTIVSAIGLVELFQTGKIIIARNYQSFRMYAILAIMYLVIITLLTRLAKRLEKRLK
>NZ_CP013908.1|WP_000818887.1|1439682_1440423_+|amino-acid-ABC-transporter-ATP-binding-protein
MAELKIDVQDLHKSYGQNEVLKGIDAKFYEGDVVCIIGPSGSGKSTFLRTLNLLESITSGKVVVDGFELSNPKTDIDKARENIGMVFQHFNLFPHMSVLENITFAPIELGKESKEAAEKHGMELLEKVGLADKANAKPDSLSGGQKQRVAIARSLAMNPDILLFDEPTSALDPEMVGDVLNVMKDLAEQGMTMLIVTHEMGFARQVANRVIFTDGGRFLEDGTPEQIFDTPQHPRLQDFLNKVLNV
>NZ_CP013908.1|WP_000656279.1|1440571_1440922_+|hypothetical-protein
MKDYINRILHFIKEHMTYHVNFIDDFLDIKWEKVSNIHLRFWTTIIAYLVIFILSISTVILNLVLLFQGFLTQNPIIYLLFFITLVCAFYFAYKFITYTPTIVKNALQYIKKLKNV
>NZ_CP013908.1|WP_000502594.1|1441013_1441172_-|hypothetical-protein
MGDKPISFRDKDGNFVSAADVWNAEKLEELFNTLNPNRKLRLEREKLAKEKG
>NZ_CP013908.1|WP_000061665.1|1441197_1442511_-|GTPase-ObgE
MSMFLDTAKISVKAGRGGDGMVAFRREKYVPNGGPWGGDGGKGGSVIFKVNEGLRTLMDFRYNRNFKAKAGEKGMTKGMHGRGAEDLIVSLPPGTTVRDATTGKVITDLVEHDQEFVVARGGRGGRGNIRFATPRNPAPEIAENGEPGEERELQLELKILADVGLVGFPSVGKSTLLSVVSAAKPKIGAYHFTTIVPNLGMVRTKSGDSFAMADLPGLIEGASQGVGLGTQFLRHIERTRVILHVIDMSASEGRDPYDDYVSINNELETYNLRLMERPQIIVANKMDMPDSEENLAAFKEKLAANYDEFDDMPMIFPISSLAHQGLENLMDATAELLANTEEFLLYDETDMQEDEAYYGFNEDERPFEITRDDDATWVLYGDKLEKLFVMTNMERDESIMKFARQLRGMGVDEALRERGAKDGDIVRIGNFEFEFVD
>NZ_CP013908.1|WP_000863865.1|1442571_1442700_-|DUF4044-domain-containing-protein
MAFGDNGQRKKTGFEKLTLFVVILMVLVTVGGLVFGAISAIM
>NZ_CP013908.1|WP_000244035.1|1442877_1444119_+|aminopeptidase
MVLQDFDNLLKKYAQLIISKGLNVQKGHTLALTIDVEQVHLARLLTEAAYEKGASEVIVDYTDDFITRQRLLHASDEVLTNVPQYTVDKSLALLNKKASRLVVKSSNPNAFATVDPKRLSETTRATAIALEEQSRAIQANKVSWNVAAAAGREWAALVFPELKTSDQQVDALWDTIFKLNRIYEDDPIAAWDAHEAKLLEKATKLNQEQFDALHYTAPGTDLTLGMPKNHIWEAAGSLNAQGETFIANMPTEEIFSAPDYRRADGYVTSTKPLSYAGVIIENMMFTFKDGKIINVTAEKGQETIQRLIEENDGARSLGEVALVPHKTPISLSGLIFFNTLFDENASNHLAIGSAYAFNVEGGTEMTSQELDEAGLNRSSTHVDFMIGSEQMDIDGIRADGTAVPIFRNGEWAI
>NZ_CP013908.1|WP_000865325.1|1444153_1444732_-|LPXTG-cell-wall-anchor-domain-containing-protein
MKVKNKILTMVALTVLTCATYSSIGYADTSDKNTDTSVVTTTLSEEKRLDELDQSSTGSSSENESSSSSEPETNPSTNPPTTEPSQPSPSEENKPDGSTKTEIGNNKDISSGTKVLISEDSIKNFSKASSDQEEVDRDESSSSKANDEKKGHSKPKKELPKTGDSHSDTVIASTGGIILLSLSLYNKKMKLY

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Crispr_ID: NZ_CP013908_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013908_3

1962493-1962882

Orphan

Consensus_repeat	Method
TTTAGCTTCTGGNTTAGC	CRT

6 spacers

The CRISPR arrays of NZ_CP013908_3

>merge|NZ_CP013908|3|1962493-1962882|CRT
TTTGGTTTCTGGTTTAGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGTTTAACTTCTGGTTTAACTTCTGGTTTGGCTTCTGGTTTAGCTTCTGGCTTAGCTTCTGGTTTGGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTTTGGCTTCTGGTTTAGCCTCTGGTTTGGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGTTTAACTTCTGGTTTGGCTTCTGGTTTAGCTTCTGGCTTAGCTTCTGGTTTGGCCTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCTTCTGGCTTAGCCTCTGGTTTAGCTTCTGGCTTAGCCTCTGGTTTAGCTTCTGGCTTAGCCTCTGGTTTGGCCTCTGGCTTAAC

>NZ_CP013908|3|2|1962493-1962882|CRT
TTTGGTTTCTGGTTTAGC	CTCTGGCTTAACGTCTGGTTTAACTTCTGGTTTAACTTCTGGTTTAACTTCTGGTTTGGCTTCTGGTTTAGCTTCTGG
CTTAGCTTCTGGTTTGGC	CTCTGGCTTAACGTCTGGTTTAACTTCTGGCTTAGCCTCTGGTTTGGCTTCTGG
TTTAGCCTCTGGTTTGGC	CTCTGGCTTAACGTCTGGTTTAACTTCTGGTTTAACTTCTGGTTTGGCTTCTGG
TTTAGCTTCTGGCTTAGC	TTCTGGTTTGGCCTCTGGCTTAACGTCTGG
TTTAACTTCTGGCTTAGC	TTCTGGCTTAGCCTCTGG
TTTAGCTTCTGGCTTAGC	CTCTGGTTTAGCTTCTGGCTTAGCCTCTGG
TTTGGCCTCTGGCTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013908.1\|WP_000953621.1\|1960574_1961420_-\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132847
NZ_CP013908.1\|WP_000010476.1\|1967031_1967916_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP013908.1\|WP_000077187.1\|1969750_1970962_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP013908.1\|WP_001182060.1\|1972952_1973732_-\|uridine-phosphorylase	unknown	unknown	gnl\|CDD\|350167
NZ_CP013908.1\|WP_001159688.1\|1971729_1972932_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP013908.1\|WP_000410674.1\|1947584_1948277_-\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP013908.1\|WP_000903268.1\|1955708_1956317_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013908.1\|WP_000161340.1\|1953544_1954231_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP013908.1\|WP_000887149.1\|1961557_1962097_-\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP013908.1\|WP_001125582.1\|1973889_1974627_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP013908.1\|WP_075316627.1\|1954227_1955616_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP013908.1\|WP_000145170.1\|1956406_1958908_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP013908.1\|WP_001093382.1\|1948599_1953312_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173801
NZ_CP013908.1\|WP_000057521.1\|1964465_1964618_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|234783
NZ_CP013908.1\|WP_000497678.1\|1964256_1964430_-\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|223762
NZ_CP013908.1\|WP_011058388.1\|1948511_1948637_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013908.1\|WP_000764803.1\|1964666_1966988_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP013908.1\|WP_000453154.1\|1971028_1971700_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP013908.1\|WP_000459245.1\|1967940_1969581_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226987
NZ_CP013908.1\|WP_000074731.1\|1959284_1960532_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929

Protein	Function_ID	Function_description	E-value
NZ_CP013908.1\|WP_000953621.1\|1960574_1961420_-\|patatin-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	8.616e-122
NZ_CP013908.1\|WP_000077187.1\|1969750_1970962_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP013908.1\|WP_001182060.1\|1972952_1973732_-\|uridine-phosphorylase	gnl\|CDD\|350167	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases. Uridine phosphorylase (UP) is specific for pyrimidines, and is involved in pyrimidine salvage and in the maintenance of uridine homeostasis. In addition to E. coli Udp, this subfamily includes Shewanella oneidensis MR-1 UP and Plasmodium falciparum purine nucleoside phosphorylase (PfPNP). PfPNP is an outlier in terms of genetic distance from the other families of PNPs. PfPNP is catalytically active for inosine and guanosine, and in addition, has a weak UP activity. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	4.65794e-137
NZ_CP013908.1\|WP_001159688.1\|1971729_1972932_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	3.49248e-155
NZ_CP013908.1\|WP_000410674.1\|1947584_1948277_-\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	1.19476e-51
NZ_CP013908.1\|WP_000057521.1\|1964465_1964618_-\|50S-ribosomal-protein-L33	gnl\|CDD\|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	2.53308e-18
NZ_CP013908.1\|WP_000161340.1\|1953544_1954231_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.70608e-62
NZ_CP013908.1\|WP_000887149.1\|1961557_1962097_-\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	3.00072e-83
NZ_CP013908.1\|WP_075316627.1\|1954227_1955616_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.14534e-42
NZ_CP013908.1\|WP_000145170.1\|1956406_1958908_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP013908.1\|WP_001093382.1\|1948599_1953312_+\|S8-family-serine-peptidase	gnl\|CDD\|173801	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.74688e-89
NZ_CP013908.1\|WP_000010476.1\|1967031_1967916_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	7.14066e-85
NZ_CP013908.1\|WP_000497678.1\|1964256_1964430_-\|preprotein-translocase-subunit-SecE	gnl\|CDD\|223762	COG0690, SecE, Preprotein translocase subunit SecE [Intracellular trafficking and secretion].	5.81702e-09
NZ_CP013908.1\|WP_001125582.1\|1973889_1974627_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	6.94122e-33
NZ_CP013908.1\|WP_000764803.1\|1964666_1966988_-\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	0
NZ_CP013908.1\|WP_000453154.1\|1971028_1971700_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	3.25832e-110
NZ_CP013908.1\|WP_000459245.1\|1967940_1969581_-\|hypothetical-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	3.0337e-08
NZ_CP013908.1\|WP_000074731.1\|1959284_1960532_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.90301e-69

>NZ_CP013908.1|WP_000887149.1|1961557_1962097_-|transcription-termination/antitermination-protein-NusG
MLDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGKTKEIEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRSILISMGQTVDVFDTNIKEGDVVQIIDGAFIGQEGRVVEIENNKVKLMINMFGSETQAELELYQVAEL
>NZ_CP013908.1|WP_000953621.1|1960574_1961420_-|patatin-family-protein
MLSVGLVLEGGGMRGLYTAGVLDAFLDAGIKIDGIVSVSAGALFGVNFVSRQRERALRYNKKYLSHPEYMSLRSWLRTGNFVNKDFTYYEVPMKLDVFDDEAFKKSSIDFYVVATEMTSGKPEYFKIDSVFEQMEILRASSALPVVSKMVDWQGKKYLDGGLSDSIPVDFARGLGFDKLIVVMTRPLNYQKKPSSGRLYKTLYRKYPNFVKTASNRYQQYNNSLEKVMSLEKIGDLFAIRPSKSLVIGRLEKNPDKLDSIYQLGMKDAKSVMPELNSYLMK
>NZ_CP013908.1|WP_000074731.1|1959284_1960532_+|MFS-transporter
MSPLNINKNNWRALIAAIVASGTDDLNIMFLAFSMSTIITDLHLSAAQAGWIGTITNLGMLVGGLIFGLLADRYNKFKVFKWTILIFSIATGLVFFTTNLSYLYIMRFIAGIGVGGEYGIAIAIMAGIVPANKMGRISSLNGIAGQVGSISSALLAGWLAPALGWRGLFLFGLLPIVLVLWMQFAIDDKDILDQYNTDADDEPLDISIKALFDTPVLATQSLALMVMTTVQIAGYFGMMNWLPTIIQTNLNVSVKNSSLWMIATILGMCLGMLVFGQLLDKFGPRLVYGCFLLSSAICVYLFQFATTMPSMIIGGAVVGFFVNGMFAGYGAMITRLYPHHIRSTANNLILNVGRAIGGFSSVIIGMILDVSNVSMVMLFLASLYIVSFLSMLSIKQLKRQKYHTNLTQLDVKPTD
>NZ_CP013908.1|WP_000145170.1|1956406_1958908_-|leucine--tRNA-ligase
MTFYNHKEIEPKWQAFWADNHTFKTGTDASKPKFYALDMFPYPSGAGLHVGHPEGYTATDILSRFKRAQGHNVLHPMGWDAFGLPAEQYAMDTGNDPAEFTAENIANFKRQINALGFSYDWDREVNTTAPNYYKWTQWIFTKLYEKGLAYEAEVPVNWVEELGTAIANEEVLPDGTSERGGYPVVRKPMRQWMLKITAYAERLLEDLEEVDWPESIKDMQRNWIGKSTGANVTFKVKDTDKDFTVFTTRPDTLFGATYAVLAPEHALVDAITTADQAEAVAEYKRQASLKSDLARTDLAKEKTGVWTGAYAINPVNGKEIPVWIADYVLASYGTGAIMAVPAHDERDWEFAKQFKLDIIPVLEGGNVEEAAFTEDGLHINSDFLDGLDKAAAIAKMVEWLEVEGVGNEKVTYRLRDWLFSRQRYWGEPIPIIHWEDGTSTAVPESELPLVLPVTKDIRPSGTGESPLANLTDWLEVTREDGVKGRRETNTMPQWAGSSWYYLRYIDPHNTEKLADEELLKQWLPVDIYVGGAEHAVLHLLYARFWHKVLYDLGVVPTKEPFQKLFNQGMILGTSYRDSRGALVATDKVEKRDGSFFHVETGEELEQAPAKMSKSLKNVVNPDDVVEQYGADTLRVYEMFMGPLDASIAWSEEGLEGSRKFLDRVYRLITTKEITKENSGALDKVYNETVKAVTEQVDQMKFNTAIAQLMVFVNAANKEDKLFSDYAKGFVQLIAPFAPHLGEELWQVLTASGESISYVPWPSYDESKLVENEIEIVVQIKGKVKAKLVVAKDLSREELQELALANEKVQAEIAGKDIIKVIAVPNKLVNIVVK
>NZ_CP013908.1|WP_000903268.1|1955708_1956317_+|hypothetical-protein
MLHSKKIHSLSLIAVLSLATYTSLQPNHVTAEQSQKTSTVHMSQKTIEHKLKVADKEAAPLYAKIDHIQRHIEVKKAKDLKVIELYINKDINQLEKQNKRLLTKFYTSIDNQTWDSTSEVKKLIDKTNLSTNEKDRLKLYFEQRAYLETRLNDRYQKFDNSIENQNKELKILTSKIEKIYQKHGITKEVLKTYYAKKTVRAD
>NZ_CP013908.1|WP_075316627.1|1954227_1955616_+|HAMP-domain-containing-histidine-kinase
MKKKSLISNLILINSITLFLGFYLIYFSVNYVIKDYVHQMTRNSMQANFTILDSIYNNKKIPDENMVNQDSIFVWSYYAIFDQHYRMKYGTDNHKKESHDIIRYLTQKRLWQISKEKDGMFVTIKKKTYYVMTKDYSGILVDGSIKKVPKAQSQLFHVINFSDITYTQHLITKINHFLIVILVLTYIPMLFIMRKTFTGIRESIQSIQTYISSLWKNQGNHQSSQKEIVFSDFDPLLLESQEMANRIYQAEESQRNFFQNASHELRTPLMSIQGYTEGVQEGIIDAELAHSVILQENKKMKQLVDDIILLSKLDSNLSNQKDEFSLNELLNSIIAYFKPLANKQKISITYRPDKHEKLLKGNEELIQRAINNILSNALRYAVSHIKISYTNQKLTISNDRPAISKEDLPYIFDRFYKGHGGQTGIGLAMTKEIIKQHHGNIIAESDSTSTTFTIYFNCHKIA
>NZ_CP013908.1|WP_000161340.1|1953544_1954231_+|response-regulator-transcription-factor
MTKIIYFADDEKNIRDLVVPFLEHDGFTVRAFETGDLLLEAYKNQKPDLVILDIMMPGTNGLDVMKSIRQYDNIPIIMLTARDSDVDFITAFNLGTDDYFTKPFSPIKLSLHVKALFKRLDEKAIKNNTQYQFLDLILDTEKRIALLSNEEMPLTKTEFDFLLVLIKKPETAFSRETLLNRIWGFDDIESRAVDDTIKRLRKKFKQYHSQVSIKTVWGYGFKLIKEDK
>NZ_CP013908.1|WP_001093382.1|1948599_1953312_+|S8-family-serine-peptidase
MNTKQRFSIRKYKLGAVSVLLGTLFFLGGITNVAADSVINKPSDIAVEQQVKDSPTSIANETPTNNTSSALASTAQDNLVTKANNSPTETQPVAESHSQATETFSPAANQPVESTQEVSKTPLTKQNLAVKPTPAISKETPQNIDSNKIITVPKVWNTGYKGEGTVVAIIDSGLDTNHDALQLNDSTKAKYQNEQQMNAAKAKAGINYGKWYNNKVIFGHNYVDVNTELKEVKSTSHGMHVTSIATANPSKKDTNELIYGVAPEAQVMFMRVFSDEKRGTGPALYVKAIEDAVKLGADSINLSLGGANGSLVNADDRLIKALEMARLAGVSVVIAAGNDGTFGSGASKPSALYPDYGLVGSPSTAREAISVASYNNTTLVNKVFNIIGLENNKNLNNGLAAYADPKVSDKTFEVGKQYDYVFVGKGNDNDYKDKTLNGKIALIERGDITFTKKVVNAINHGAVGAIIFNNKAGEANLTMSLDPEASAIPAIFTQKEFGDVLAKNNYKIVFNNIKNKQANPNAGVLSDFSSWGLTADGQLKPDLSAPGGSIYAAINDNEYDMMSGTSMASPHVTGATALVKQYLLKEHPELKKGDIERTVKYLLMSTAKAHLNKDTGAYTSPRQQGAGIIDVAAAVQTGLYLTGGENNYGSVTLGNIKDKISFDVTVHNINKVAKDLHYTTYLNTDQVKDGFVTLAPQQLGTFTGKTIRIEPGQTQTITIDIDVSKYHDMLKKVMPNGYFLEGYVRFTDPVDGGEVLSIPYVGFKGEFQNLEVLEKSIYKLVANKEKGFYFQPKQTNEVPGSEDYTALMTTSSEPIYSTDGTSPIQLKALGSYKSIDGKWILQLDQKGQPHLAISPNDDQNQDAVAVKGVFLRNFNNLRAKVYRADDVNLQKPLWVSAPQEGDKNYYSGNTENPKSTFLYDTEWKGTTTDGIPLEDGKYKYVLTYYSDVPGSKPQQMVFDITLDRQAPTLTTATYDKDRRIFKARPAVEHGESGIFREQVFYLKKDKDGHYNSVLRQKGEDGILVEDNKVFIKQEKDGSFILPKEVNDFSHVYYTVEDYAGNLVSAKLEDLINIGNKNGLVNVKVFSPELNSNVDIDFSYSVKDDKGNVIKKQHHGKDLNLLKLPFGTYTFDLFLYDEERANLISPKSVTVTISEKDSLKDVLFKVNLLKKAALLVEFDKLLPKGATVQLVTKTNTVVDLPKATYSPTDYGKNIPVGDYRLNVTLPSGYSTLENLDDLLVSVKEGQVNLTKLTLINKAPLINALAEQTDIITQPVFYNAGTHLKNNYLANLEKAQTLIKNKVEQTSIDNAIAALRESRQALNGKETDTSLLAKAILAETEIKGNYQFVNASPLSQSTYINQVQLAKNLLQKPNVTQSEVDKALENLDIAKNQLNGHETDYSGLHHMIIKANVLKQTSSKYQNASQFAKENYNNLIKKAELLLSNRQATQAQVEELLNQIKATEQELDGRDRVSSAENYSQSLNDNDSLNTTPINPPNQPQALIFKKGMTKESEVAQKRALGVTSQTDNQKVKTNKLPKTGESTPKITYTILLFSLSMLGLATIKLKSIKRE
>NZ_CP013908.1|WP_011058388.1|1948511_1948637_+|hypothetical-protein
MKIQKIVENFDFLCFNSFCNYYVTRKGDFYEHKTAFFNPEI
>NZ_CP013908.1|WP_000410674.1|1947584_1948277_-|AzlC-family-ABC-transporter-permease
MEKGFKDGVKDALPTALGYISIGLAFGIVASASDLSAIEVGLMSALVYGGSAQFAMCALLLAKADLMTITMTVFLVNLRNMLMSLHATTIFKSAHLMNQLAIGTLITDESYGVLLGEALHHKVVSPSWMHGNNVMSYLTWVISTIIGTLLGSTIPNPEMFGLDFALVAMFIGLFVFQLFGMLSDEKRLIVYVLASVGLSYFLLATFLSGALSVLLATVVGCSVGVVLDDK
>NZ_CP013908.1|WP_000497678.1|1964256_1964430_-|preprotein-translocase-subunit-SecE
MFVKGIFQVLRDTTWPNRKQRWKDFISILEYTVFFTIVIYIFDKLLAAGVMDLINRF
>NZ_CP013908.1|WP_000057521.1|1964465_1964618_-|50S-ribosomal-protein-L33
MAQKKASLACTECGSRNYSIGVSSTPKPTRLEVNKFCKYCKKYTIHKETR
>NZ_CP013908.1|WP_000764803.1|1964666_1966988_-|penicillin-binding-protein
MKLFDKFIDLFRVDEDNDEMTRKNEQETREETSNLDGEEVYDIDDITRPSKSQYQRGIRHQKENAKSRPEWLQKVDRYLPSPKNPIRRFWRRYRIGKLLFIALMAFILIFGSYLFYLSKTATVSDLQSALKTTTTIYDKNKEYAGKLSGQKGTYVELNAISDHLKNAVIATEDRTFYENNGVNFKRFFLAVATLGKFGGGSTITQQLAKNAYLSQDQTIKRKAREFFLALELTKKYSKAEILTMYLNNSYFGNGVWGVEDASRKYFGTSAANLTVDEAATLAGMLKGPEVYNPYYSVENATNRRDTVLAAMVDAGKLTKSQAKEAASIGMKNRLADTYAGKINDYRYPSYFDAVVNEAIDTYGISEKDIVNNGYKIYTALDQNYQSGMQKTFDDTSLFPVSDYDGQSAQGASVALDPKTGGVRGLVGRVQSTKDAQFRSFNYATQSKRSPASTIKPLVVYSPAIASGWSIDKELPNKVQDFHGYKPSNYGGIETESIPMYQALANSYNIPAVYTLDKLGINKAFTYGRKFGLNMSSANKELGVALGGSVTTNPLEMAQAYSTFANDGIMHRAHLITRIETANGKLVKQFTDKPKRVISRSVASKMTSMMLGTFSNGTAINANVYGYTMAGKTGTTETDFNPNLSGDQWVVGYTPDVVISQWVGFKNTDKHHYLTDSSAGTASNIFSTQASYILPYTKGSSFTHIENAYFQNGIGSVYNAQDASNTTNQESRSIINDLKDSASKAAQDISRAVEDSNFQEKVKDAWNSLKDYFR
>NZ_CP013908.1|WP_000010476.1|1967031_1967916_+|RluA-family-pseudouridine-synthase
MSFSLKIRNPYGEHTVKELLEDYFLIPRKIRHFLRVKKHVLINNEFINWQTVVQENDTITLIFDDEDYPTKKIPLGRAELIDCLYEDEHLIIVNKPEGMKTHGNQPNEIALLNHVSAYSGQTCYVVHRLDMETSGAVLFAKNPFILPLINQRLERKEIWREYWALVEGKFSPKHQVLRDKIGRNRHDRRKRIIDSKNGQHAMTIIDVLKYIQNSSLIKCRLETGRTHQIRVHLSHHGHPLIGDPLYNPSSNNERLMLHAHRLTLSHPLTCETISVEAPSSTFEKILNNYKKGVG
>NZ_CP013908.1|WP_000459245.1|1967940_1969581_-|hypothetical-protein
MFDFFKKKVVKVCLVIFGIVLVSLLSLGFFYFSKGQVLSRFVAARSRTSGQAFDNIKEYMVWSDTGESITNDEANYANFEPLSKSEARKLGQEIKEGNKNDSMYLKRVGSRLGIFPDYRIANKPMSLTLKTNVPKLDVLLNQKKVATSNSDHFSVTVERLPRTHYTASLEGTSDGKEIKLKKDYDGKNQTIDLSVAFKSFTVTSNLMDGNLYFGDNRIAKLKDGSYSVENYPVTDGSKAYIKKVFNDGEITSHKQKLISIADNQTIKLDVDGLLNEKEAGQKLITAFNQLILYVSTGQDPQTLGTVFEKGGENDFYKGLKESIKAKFVTDNRKASHFTIPNIVLNKMTQVGKESYQVNFAADYDFNYDKSTDPDKKTYGHIIQNLTGNFIMKKSGNSYLISNDGKKDITVAKETNKVKADPVSIFPENLVGSWKGEVEDGTVTMTFDKDGKVTQKKVYKDSKSKESNHSAKVTKLEDKGNGLYLYQYESGTDTTTFVTGGIGGLKVKYAYGIKIEGNKIIPVIWQTSSDGEFDYHKPLLSKPLTKQ
>NZ_CP013908.1|WP_000077187.1|1969750_1970962_-|phosphopentomutase
MSQFDRIHLVVLDSVGIGAAPDANDFVNAGVPDGASDTLGHISKTVGLAVPNMAKIGLGNIPRPQALKTVPAEENPSGYATKLQEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEDIITKIEDFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSADPVLQIAAHEDIIPLEELYRICEYARSITMERPALLGRIIARPYVGEPGNFTRTANRHDYAVSPFEDTVLNKLDQAGIDTYAVGKINDIFNGSGINHDMGHNKSNSHGIDTLIKTMGLSEFEKGFSFTNLVDFDALYGHRRDPHGYRDCLHEFDERLPEIISAMRDKDLLLITADHGNDPTYAGTDHTREYIPLLAYSPSFTGNGLIPVGHFADISATVADNFGVDTAMIGESFLQDLV
>NZ_CP013908.1|WP_000453154.1|1971028_1971700_-|deoxyribose-phosphate-aldolase
MEVKDILKTVDHTLLATTATWPEIQTILDDAMAYETASACIPASYVKKAAEYVSGKLAICTVIGFPNGYSTTAAKVFECQDAIKNGADEIDMVINLTDVKNGDFDTVEEEIRQIKAACQDHILKVIVETCQLTKEELIELCGVVTRSGADFIKTSTGFSTAGATFEDVEVMAKYVGEGVKIKAAGGISSLEDAEKFIALGASRLGTSRIIKIVKNQKVEEGTY
>NZ_CP013908.1|WP_001159688.1|1971729_1972932_-|NupC/NupG-family-nucleoside-CNT-transporter
MQFIYSIIGILLVLGIVYAISFNRKSVSLSLIGKALIVQFIIALILVRIPLGQQVVSVVSTGVTKVINCGQAGLNFVFGSLADSGAKTGFIFAIQTLGNIVFLSALVSLLYYVGILGFVVKWIGKGVGKIMKSSEVESFVAVANMFLGQTDSPILVSKYLGRMTDSEIMVVLVSGMGSMSVSILGGYIALGIPMEYLLIASTMVPIGSILIAKILLPQTEPVQKIDDIKMDNKGNNANVIDAIAEGASTGAQMAFSIGASLIAFVGLVSLINMMLSGLGIRLEQIFSYVFAPFGFLMGFDHKNILLEGNLLGSKLILNEFVSFQQLGHLIKSLDYRTALVATISLCGFANLSSLGICVSGIAVLCPEKRGTLARLVFRAMIGGIAVSMLSAFIVGIVTLF
>NZ_CP013908.1|WP_001182060.1|1972952_1973732_-|uridine-phosphorylase
MQNYSGEVGLQYHLQIRPGDVGRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFYGQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLIENDKSQ
>NZ_CP013908.1|WP_001125582.1|1973889_1974627_+|GntR-family-transcriptional-regulator
MPKNELNNKLNKLKHVQVYNKIFNMIQDGTYSPGMQLPSEPELAGQLNVSRATLRKSLALLQEDHLVKNIRGKGNFIRENSSNLSENGYENRQHPIKTCLTSKITEVELEFRVEVPAEAITASLKQETPVVVIADRWYHTDDGPLAYTLSFIPIELISDAEISLHDTKQLLNFIEEGIYQEGISSHSQSHLGYATSGNFSATKYTLSDHGQFILIQETIFNQEKILMCNKHYVPIEHFELSITSH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013908_2	2.23\|1430313\|46\|NZ_CP013908\|CRT	1430313-1430358	46	NZ_CP013908.1	1430349-1430394	1	0.978
NZ_CP013908_2	2.14\|1429785\|22\|NZ_CP013908\|CRT	1429785-1429806	22	NZ_CP013908.1	1430397-1430418	2	0.909

1. spacer 2.23|1430313|46|NZ_CP013908|CRT matches to position: 1430349-1430394, mismatch: 1, identity: 0.978

cgacgcactcatggaagcgctggtacttgctgatgtcgaggcactc	CRISPR spacer
cgaggcactcatggaagcgctggtacttgctgatgtcgaggcactc	Protospacer
*** ******************************************

2. spacer 2.14|1429785|22|NZ_CP013908|CRT matches to position: 1430397-1430418, mismatch: 2, identity: 0.909

ggaagcgctagtacttgttgac	CRISPR spacer
ggaagcgctggtacttgctgac	Protospacer
*********.*******.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013908_1	1.1\|943717\|28\|NZ_CP013908\|CRISPRCasFinder	943717-943744	28	MK448971	Streptococcus phage Javan52, complete genome	39084-39111	0	1.0
NZ_CP013908_1	1.1\|943717\|28\|NZ_CP013908\|CRISPRCasFinder	943717-943744	28	MK448829	Streptococcus phage Javan7, complete genome	33777-33804	0	1.0
NZ_CP013908_1	1.1\|943717\|28\|NZ_CP013908\|CRISPRCasFinder	943717-943744	28	MH853355	Streptococcus phage LF1, complete genome	24643-24670	0	1.0
NZ_CP013908_1	1.1\|943717\|28\|NZ_CP013908\|CRISPRCasFinder	943717-943744	28	MK448837	Streptococcus phage Javan10, complete genome	32312-32339	0	1.0
NZ_CP013908_1	1.1\|943717\|28\|NZ_CP013908\|CRISPRCasFinder	943717-943744	28	MH853358	Streptococcus phage LF4, complete genome	24643-24670	0	1.0
NZ_CP013908_2	2.9\|1429497\|22\|NZ_CP013908\|CRT	1429497-1429518	22	NZ_CP020032	Geobacillus thermodenitrificans strain T12 plasmid pGeo12b, complete sequence	2981-3002	3	0.864
NZ_CP013908_2	2.9\|1429497\|22\|NZ_CP013908\|CRT	1429497-1429518	22	NZ_CP020032	Geobacillus thermodenitrificans strain T12 plasmid pGeo12b, complete sequence	31001-31022	3	0.864
NZ_CP013908_2	2.9\|1429497\|22\|NZ_CP013908\|CRT	1429497-1429518	22	NZ_CP020032	Geobacillus thermodenitrificans strain T12 plasmid pGeo12b, complete sequence	40204-40225	3	0.864
NZ_CP013908_2	2.9\|1429497\|22\|NZ_CP013908\|CRT	1429497-1429518	22	NZ_CP017691	Geobacillus thermodenitrificans strain ID-1 plasmid pLDW-2, complete sequence	12147-12168	3	0.864
NZ_CP013908_2	2.9\|1429497\|22\|NZ_CP013908\|CRT	1429497-1429518	22	NZ_CP017691	Geobacillus thermodenitrificans strain ID-1 plasmid pLDW-2, complete sequence	54502-54523	3	0.864
NZ_CP013908_2	2.9\|1429497\|22\|NZ_CP013908\|CRT	1429497-1429518	22	NZ_CP017691	Geobacillus thermodenitrificans strain ID-1 plasmid pLDW-2, complete sequence	82257-82278	3	0.864
NZ_CP013908_2	2.9\|1429497\|22\|NZ_CP013908\|CRT	1429497-1429518	22	NC_015665	Parageobacillus thermoglucosidasius C56-YS93 plasmid pGEOTH01, complete sequence	74267-74288	3	0.864
NZ_CP013908_2	2.9\|1429497\|22\|NZ_CP013908\|CRT	1429497-1429518	22	NZ_CP016623	Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI001, complete sequence	4054-4075	3	0.864
NZ_CP013908_3	3.6\|1962835\|30\|NZ_CP013908\|CRT	1962835-1962864	30	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	39397-39426	5	0.833
NZ_CP013908_3	3.6\|1962835\|30\|NZ_CP013908\|CRT	1962835-1962864	30	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	39886-39915	5	0.833
NZ_CP013908_3	3.6\|1962835\|30\|NZ_CP013908\|CRT	1962835-1962864	30	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	224847-224876	5	0.833
NZ_CP013908_3	3.6\|1962835\|30\|NZ_CP013908\|CRT	1962835-1962864	30	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	225336-225365	5	0.833
NZ_CP013908_1	1.1\|943717\|28\|NZ_CP013908\|CRISPRCasFinder	943717-943744	28	MN698241	Pelagibacter phage HTVC027P, complete genome	28408-28435	6	0.786
NZ_CP013908_3	3.4\|1962751\|30\|NZ_CP013908\|CRT	1962751-1962780	30	MN855875	Bacteriophage sp. isolate 328, complete genome	1396-1425	7	0.767
NZ_CP013908_3	3.6\|1962835\|30\|NZ_CP013908\|CRT	1962835-1962864	30	MK448891	Streptococcus phage Javan266, complete genome	20731-20760	7	0.767
NZ_CP013908_3	3.6\|1962835\|30\|NZ_CP013908\|CRT	1962835-1962864	30	KP942676	Pectobacterium carotovorum plasmid Drgb1, complete sequence	100824-100853	8	0.733
NZ_CP013908_3	3.6\|1962835\|30\|NZ_CP013908\|CRT	1962835-1962864	30	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	222231-222260	8	0.733
NZ_CP013908_3	3.6\|1962835\|30\|NZ_CP013908\|CRT	1962835-1962864	30	AB897757	Klebsiella phage K64-1 DNA, complete genome	221608-221637	8	0.733
NZ_CP013908_3	3.6\|1962835\|30\|NZ_CP013908\|CRT	1962835-1962864	30	NZ_CP026426	Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence	224631-224660	8	0.733
NZ_CP013908_3	3.4\|1962751\|30\|NZ_CP013908\|CRT	1962751-1962780	30	NZ_CP054364	Escherichia coli strain SCU-171 plasmid pSCU-171-1, complete sequence	22761-22790	9	0.7
NZ_CP013908_3	3.4\|1962751\|30\|NZ_CP013908\|CRT	1962751-1962780	30	NZ_CP051689	Escherichia coli strain SCU-387 plasmid pSCU-387-1, complete sequence	31593-31622	9	0.7
NZ_CP013908_3	3.4\|1962751\|30\|NZ_CP013908\|CRT	1962751-1962780	30	NZ_CP012377	Escherichia coli strain GE3 isolate human faeces plasmid pGE3, complete sequence	16834-16863	9	0.7
NZ_CP013908_3	3.4\|1962751\|30\|NZ_CP013908\|CRT	1962751-1962780	30	NZ_CP040454	Escherichia coli strain UPEC132 plasmid unnamed1, complete sequence	16471-16500	9	0.7
NZ_CP013908_3	3.4\|1962751\|30\|NZ_CP013908\|CRT	1962751-1962780	30	MG711465	Faecalibacterium phage FP_Brigit, complete genome	26095-26124	9	0.7
NZ_CP013908_2	2.10\|1429545\|34\|NZ_CP013908\|CRT	1429545-1429578	34	KX879752	Halomonas phage QHHSV-1, complete genome	11003-11036	11	0.676

1. spacer 1.1|943717|28|NZ_CP013908|CRISPRCasFinder matches to MK448971 (Streptococcus phage Javan52, complete genome) position: , mismatch: 0, identity: 1.0

aaaattaatgacgcaattgctaagtcaa	CRISPR spacer
aaaattaatgacgcaattgctaagtcaa	Protospacer
****************************

2. spacer 1.1|943717|28|NZ_CP013908|CRISPRCasFinder matches to MK448829 (Streptococcus phage Javan7, complete genome) position: , mismatch: 0, identity: 1.0

aaaattaatgacgcaattgctaagtcaa	CRISPR spacer
aaaattaatgacgcaattgctaagtcaa	Protospacer
****************************

3. spacer 1.1|943717|28|NZ_CP013908|CRISPRCasFinder matches to MH853355 (Streptococcus phage LF1, complete genome) position: , mismatch: 0, identity: 1.0

aaaattaatgacgcaattgctaagtcaa	CRISPR spacer
aaaattaatgacgcaattgctaagtcaa	Protospacer
****************************

4. spacer 1.1|943717|28|NZ_CP013908|CRISPRCasFinder matches to MK448837 (Streptococcus phage Javan10, complete genome) position: , mismatch: 0, identity: 1.0

aaaattaatgacgcaattgctaagtcaa	CRISPR spacer
aaaattaatgacgcaattgctaagtcaa	Protospacer
****************************

5. spacer 1.1|943717|28|NZ_CP013908|CRISPRCasFinder matches to MH853358 (Streptococcus phage LF4, complete genome) position: , mismatch: 0, identity: 1.0

aaaattaatgacgcaattgctaagtcaa	CRISPR spacer
aaaattaatgacgcaattgctaagtcaa	Protospacer
****************************

6. spacer 2.9|1429497|22|NZ_CP013908|CRT matches to NZ_CP020032 (Geobacillus thermodenitrificans strain T12 plasmid pGeo12b, complete sequence) position: , mismatch: 3, identity: 0.864

ggaagcactggtactggcactg	CRISPR spacer
acaagcactggtactggcacta	Protospacer
. *******************.

7. spacer 2.9|1429497|22|NZ_CP013908|CRT matches to NZ_CP020032 (Geobacillus thermodenitrificans strain T12 plasmid pGeo12b, complete sequence) position: , mismatch: 3, identity: 0.864

ggaagcactggtactggcactg	CRISPR spacer
acaagcactggtactggcacta	Protospacer
. *******************.

8. spacer 2.9|1429497|22|NZ_CP013908|CRT matches to NZ_CP020032 (Geobacillus thermodenitrificans strain T12 plasmid pGeo12b, complete sequence) position: , mismatch: 3, identity: 0.864

ggaagcactggtactggcactg	CRISPR spacer
acaagcactggtactggcacta	Protospacer
. *******************.

9. spacer 2.9|1429497|22|NZ_CP013908|CRT matches to NZ_CP017691 (Geobacillus thermodenitrificans strain ID-1 plasmid pLDW-2, complete sequence) position: , mismatch: 3, identity: 0.864

ggaagcactggtactggcactg	CRISPR spacer
acaagcactggtactggcacta	Protospacer
. *******************.

10. spacer 2.9|1429497|22|NZ_CP013908|CRT matches to NZ_CP017691 (Geobacillus thermodenitrificans strain ID-1 plasmid pLDW-2, complete sequence) position: , mismatch: 3, identity: 0.864

ggaagcactggtactggcactg	CRISPR spacer
acaagcactggtactggcacta	Protospacer
. *******************.

11. spacer 2.9|1429497|22|NZ_CP013908|CRT matches to NZ_CP017691 (Geobacillus thermodenitrificans strain ID-1 plasmid pLDW-2, complete sequence) position: , mismatch: 3, identity: 0.864

ggaagcactggtactggcactg	CRISPR spacer
acaagcactggtactggcacta	Protospacer
. *******************.

12. spacer 2.9|1429497|22|NZ_CP013908|CRT matches to NC_015665 (Parageobacillus thermoglucosidasius C56-YS93 plasmid pGEOTH01, complete sequence) position: , mismatch: 3, identity: 0.864

ggaagcactggtactggcactg	CRISPR spacer
acaagcactggtactggcacta	Protospacer
. *******************.

13. spacer 2.9|1429497|22|NZ_CP013908|CRT matches to NZ_CP016623 (Parageobacillus thermoglucosidasius strain Wild Type plasmid pNCI001, complete sequence) position: , mismatch: 3, identity: 0.864

ggaagcactggtactggcactg	CRISPR spacer
acaagcactggtactggcacta	Protospacer
. *******************.

14. spacer 3.6|1962835|30|NZ_CP013908|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 5, identity: 0.833

ctctggtttagcttctggcttagcctctgg	CRISPR spacer
aaccggtttaacttctggcttagcctctgc	Protospacer
  *.******.******************

15. spacer 3.6|1962835|30|NZ_CP013908|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 5, identity: 0.833

ctctggtttagcttctggcttagcctctgg	CRISPR spacer
aaccggtttaacttctggcttagcctctgc	Protospacer
  *.******.******************

16. spacer 3.6|1962835|30|NZ_CP013908|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 5, identity: 0.833

ctctggtttagcttctggcttagcctctgg	CRISPR spacer
aaccggtttaacttctggcttagcctctgc	Protospacer
  *.******.******************

17. spacer 3.6|1962835|30|NZ_CP013908|CRT matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 5, identity: 0.833

ctctggtttagcttctggcttagcctctgg	CRISPR spacer
aaccggtttaacttctggcttagcctctgc	Protospacer
  *.******.******************

18. spacer 1.1|943717|28|NZ_CP013908|CRISPRCasFinder matches to MN698241 (Pelagibacter phage HTVC027P, complete genome) position: , mismatch: 6, identity: 0.786

aaaattaatgacgcaattgctaagtcaa	CRISPR spacer
attggtaatgacccaattgctaagttaa	Protospacer
*  . ******* ************.**

19. spacer 3.4|1962751|30|NZ_CP013908|CRT matches to MN855875 (Bacteriophage sp. isolate 328, complete genome) position: , mismatch: 7, identity: 0.767

ttctggtt---tggcctctggcttaacgtctgg	CRISPR spacer
---cggctgagtggcctctggctcaacgtctgc	Protospacer
   .**.*   ************.********

20. spacer 3.6|1962835|30|NZ_CP013908|CRT matches to MK448891 (Streptococcus phage Javan266, complete genome) position: , mismatch: 7, identity: 0.767

ctctggtttagcttctggcttagcctctgg	CRISPR spacer
cgattttttagcttccggcttagcatctgc	Protospacer
*  *  *********.******** ****

21. spacer 3.6|1962835|30|NZ_CP013908|CRT matches to KP942676 (Pectobacterium carotovorum plasmid Drgb1, complete sequence) position: , mismatch: 8, identity: 0.733

ctctggtttagcttctggcttagcctctgg	CRISPR spacer
ctctggtttatcttctggctttaaaaaggg	Protospacer
********** ********** .     **

22. spacer 3.6|1962835|30|NZ_CP013908|CRT matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 8, identity: 0.733

ctctggtttagcttctggcttagcctctgg-----	CRISPR spacer
ttctggtttagcttctgggtta-----tgaatttt	Protospacer
.***************** ***     **.

23. spacer 3.6|1962835|30|NZ_CP013908|CRT matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 8, identity: 0.733

ctctggtttagcttctggcttagcctctgg-----	CRISPR spacer
ttctggtttagcttctgggtta-----tgaatttt	Protospacer
.***************** ***     **.

24. spacer 3.6|1962835|30|NZ_CP013908|CRT matches to NZ_CP026426 (Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence) position: , mismatch: 8, identity: 0.733

ctctggtttagcttctggcttagcctctgg	CRISPR spacer
agatggtttagcttctagcttagcaaccag	Protospacer
   *************.*******  *..*

25. spacer 3.4|1962751|30|NZ_CP013908|CRT matches to NZ_CP054364 (Escherichia coli strain SCU-171 plasmid pSCU-171-1, complete sequence) position: , mismatch: 9, identity: 0.7

ttctggtttggcctctggcttaacgtctgg	CRISPR spacer
ttctggtttggccgctggcgtaaaaatcct	Protospacer
************* ***** *** . ..

26. spacer 3.4|1962751|30|NZ_CP013908|CRT matches to NZ_CP051689 (Escherichia coli strain SCU-387 plasmid pSCU-387-1, complete sequence) position: , mismatch: 9, identity: 0.7

ttctggtttggcctctggcttaacgtctgg	CRISPR spacer
ttctggtttggccgctggcgtaaaaatcct	Protospacer
************* ***** *** . ..

27. spacer 3.4|1962751|30|NZ_CP013908|CRT matches to NZ_CP012377 (Escherichia coli strain GE3 isolate human faeces plasmid pGE3, complete sequence) position: , mismatch: 9, identity: 0.7

ttctggtttggcctctggcttaacgtctgg	CRISPR spacer
ttctggtttggccgctggcgtaaaaatcct	Protospacer
************* ***** *** . ..

28. spacer 3.4|1962751|30|NZ_CP013908|CRT matches to NZ_CP040454 (Escherichia coli strain UPEC132 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

ttctggtttggcctctggcttaacgtctgg	CRISPR spacer
ttctggtttggccgctggcgtaaaaatcct	Protospacer
************* ***** *** . ..

29. spacer 3.4|1962751|30|NZ_CP013908|CRT matches to MG711465 (Faecalibacterium phage FP_Brigit, complete genome) position: , mismatch: 9, identity: 0.7

ttctggtttggcctctggcttaacgtctgg	CRISPR spacer
gaagggtttggcctctggcttatcgctgcg	Protospacer
    ****************** **..  *

30. spacer 2.10|1429545|34|NZ_CP013908|CRT matches to KX879752 (Halomonas phage QHHSV-1, complete genome) position: , mismatch: 11, identity: 0.676

tgaggcgctagtacttgctgacgtggatgcactc	CRISPR spacer
ccgggcgctggttcttgctgacgtggacggtgag	Protospacer
. .******.** **************.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36583 : 48648

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001042250.1\|36583_40309_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	1.9e-38	25.9
WP_000220676.1\|40542_41997_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.7e-54	32.7
WP_001291328.1\|42024_43047_+	phosphoribosylformylglycinamidine cyclo-ligase	R9TMC7	Synechococcus_phage	1.1e-63	42.7
WP_000685109.1\|43214_43763_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-25	35.6
WP_000780022.1\|43785_44538_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000166549.1\|44557_46105_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.9e-78	49.2
WP_001045908.1\|46297_47197_+	peptidoglycan DD-metalloendopeptidase family protein	A0A221J6U0	Arthrobacter_phage	4.1e-19	45.9
WP_000783419.1\|47343_48648_+	LysM peptidoglycan-binding domain-containing protein	A0A2D1GNZ3	Streptomyces_phage	3.7e-05	40.5

DBSCAN-SWA_2

586551 : 667233

Streptococcus_phage(86.0%)

terminase,integrase,tail,protease,holin,portal,transposase,head,capsid

attL 585277:585291|attR 623039:623053

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
585277:585291	attL	NA	NA	NA	NA
WP_071659971.1\|586551_587166_-\|integrase	site-specific integrase	F8HGP4	Streptococcus_phage	9.2e-55	60.7
WP_001872365.1\|587168_587435_-	hypothetical protein	Q77YW7	Streptococcus_phage	9.2e-20	65.2
WP_000640623.1\|587434_587839_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001122304.1\|588000_588201_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_001865698.1\|588222_588483_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	3.4e-11	43.0
WP_001867107.1\|588608_588818_+\|transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	1.4e-15	55.4
WP_000508795.1\|588990_589152_-	TM2 domain-containing protein	NA	NA	NA	NA
WP_000594367.1\|589893_591171_+	ABC transporter permease	NA	NA	NA	NA
WP_000353149.1\|591180_591837_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-22	31.8
WP_000594351.1\|591836_593213_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_000699093.1\|593309_593963_+	response regulator transcription factor	W8CYM9	Bacillus_phage	8.1e-25	33.6
WP_000734168.1\|593959_595261_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.7e-05	25.7
WP_000076709.1\|596137_596317_+	CsbD family protein	J7KJ36	Streptococcus_phage	4.3e-21	96.4
WP_000027835.1\|596358_596547_+	hypothetical protein	J7KIW4	Streptococcus_phage	3.3e-16	78.2
WP_000078931.1\|596971_598177_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_001106189.1\|598295_598856_+	HAD-IA family hydrolase	NA	NA	NA	NA
WP_000134196.1\|598856_600809_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.5e-143	44.8
WP_000094341.1\|600902_602627_+	septation ring formation regulator EzrA	NA	NA	NA	NA
WP_000589685.1\|602720_603362_+	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_000409124.1\|603382_603868_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_075316597.1\|603880_604336_-	YueI family protein	W6LLD2	Streptococcus_phage	2.3e-26	48.2
WP_000022829.1\|604533_605841_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.5e-235	95.4
WP_000823925.1\|605948_607013_-	endonuclease	NA	NA	NA	NA
WP_000772014.1\|607241_608525_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_001127193.1\|608517_609030_+	shikimate kinase	NA	NA	NA	NA
WP_000089337.1\|609086_610460_+	LCP family protein	NA	NA	NA	NA
WP_000902654.1\|610560_611916_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	D0R096	Streptococcus_phage	1.8e-191	73.6
WP_001261523.1\|612437_612956_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_000445922.1\|613258_613789_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_075316598.1\|613958_618065_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_000459853.1\|619834_621703_+	XRE family transcriptional regulator	E4ZFJ9	Streptococcus_phage	1.2e-302	80.9
WP_001122250.1\|622111_622681_+	hypothetical protein	A0A1B0RXB3	Streptococcus_phage	1.1e-86	81.0
WP_000905647.1\|622719_624675_-	DNA polymerase	D0R0B0	Streptococcus_phage	0.0e+00	83.6
623039:623053	attR	NA	NA	NA	NA
WP_000208947.1\|624905_625469_-	DUF2815 family protein	A0A1B0RXA9	Streptococcus_phage	1.6e-90	92.8
WP_001898230.1\|625473_626595_-	DUF2800 domain-containing protein	A0A1X9I6D8	Streptococcus_phage	1.2e-198	88.5
WP_000041409.1\|626587_626911_-	hypothetical protein	A0A1B0RXB7	Streptococcus_phage	1.5e-32	71.2
WP_001160922.1\|627307_629587_+	hypothetical protein	A0A1B0RXC5	Streptococcus_phage	0.0e+00	79.8
WP_001208491.1\|629870_630152_+	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	2.0e-36	78.5
WP_000768924.1\|630132_631509_+	DEAD/DEAH box helicase	A0A1X9I6B0	Streptococcus_phage	3.9e-231	86.2
WP_000356300.1\|631501_631999_+	hypothetical protein	A0A1B0RXB9	Streptococcus_phage	4.3e-63	75.0
WP_000640709.1\|632397_633435_+	methionine adenosyltransferase	E4ZFL0	Streptococcus_phage	3.6e-168	84.6
WP_001138027.1\|633436_633802_+	HNH endonuclease	A0A1B0RXJ3	Streptococcus_phage	6.4e-64	90.1
WP_000999416.1\|634119_634575_+	hypothetical protein	A0A1B0RXC6	Streptococcus_phage	6.2e-48	56.2
WP_000211738.1\|634546_635803_+	DNA modification methylase	A0A1B0RXE5	Streptococcus_phage	1.2e-221	89.0
WP_001241132.1\|635799_637071_+	DNA cytosine methyltransferase	M1NSK8	Streptococcus_phage	1.3e-231	94.0
WP_000886223.1\|637135_637324_+	hypothetical protein	NA	NA	NA	NA
WP_000158644.1\|637394_637619_+	hypothetical protein	NA	NA	NA	NA
WP_000211844.1\|637733_637988_+	hypothetical protein	M1NSE3	Streptococcus_phage	3.9e-20	56.1
WP_000998225.1\|637989_638199_+	DUF4314 domain-containing protein	A0A1X9I6A3	Streptococcus_phage	1.3e-21	69.6
WP_001007669.1\|638247_638721_+\|terminase	phage terminase small subunit P27 family	A0A1X9I6K0	Streptococcus_phage	8.6e-85	97.5
WP_000220981.1\|638717_640310_+\|terminase	terminase large subunit	A0A1B0RXJ8	Streptococcus_phage	1.8e-307	95.7
WP_000024184.1\|640376_640670_+	hypothetical protein	NA	NA	NA	NA
WP_000181405.1\|640662_641001_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000024081.1\|641084_641324_+	hypothetical protein	NA	NA	NA	NA
WP_075316599.1\|641385_642675_+\|portal	phage portal protein	A0A1B0RXD8	Streptococcus_phage	1.6e-229	90.9
WP_001225233.1\|642667_643366_+\|protease	Clp protease ClpP	A0A1B0RXE1	Streptococcus_phage	4.9e-105	83.2
WP_000040497.1\|643379_644588_+\|capsid	phage major capsid protein	M1Q1R5	Streptococcus_phage	8.9e-211	91.0
WP_000631138.1\|644584_644842_+\|head,tail	phage gp6-like head-tail connector protein	D0R0D7	Streptococcus_phage	8.6e-31	78.8
WP_000684960.1\|644841_645180_+\|head,tail	head-tail adaptor protein	A0A1B0RXJ6	Streptococcus_phage	4.3e-38	70.5
WP_000161631.1\|645172_645541_+	HK97 gp10 family phage protein	Q6DMT7	Streptococcus_phage	2.4e-34	61.3
WP_001209966.1\|645549_645876_+	hypothetical protein	M1Q1Z4	Streptococcus_phage	4.1e-38	68.5
WP_000818570.1\|645878_646448_+	hypothetical protein	A0A1B0RXE2	Streptococcus_phage	1.3e-98	95.2
WP_001249610.1\|646459_646879_+	hypothetical protein	A0A1X9I691	Streptococcus_phage	3.7e-55	75.5
WP_000918335.1\|647061_650181_+	hypothetical protein	Q6DMT2	Streptococcus_phage	5.8e-246	77.2
WP_000618012.1\|650177_650903_+	hypothetical protein	Q6DMT1	Streptococcus_phage	9.4e-83	57.9
WP_000966165.1\|650902_653818_+	hypothetical protein	Q6DMT0	Streptococcus_phage	0.0e+00	65.2
WP_000796416.1\|653830_655687_+	hypothetical protein	Q6DMS9	Streptococcus_phage	1.3e-258	73.8
WP_000661351.1\|655704_656109_+\|holin	phage holin family protein	D0R0E9	Streptococcus_phage	6.7e-46	74.8
WP_000515885.1\|656110_657580_+	LysM peptidoglycan-binding domain-containing protein	A0A1X9I678	Streptococcus_phage	6.9e-274	96.9
WP_000111881.1\|657803_659045_+	recombinase family protein	A0A1X9I6J1	Streptococcus_phage	1.5e-221	92.7
WP_075316636.1\|658983_660300_+	recombinase family protein	E4ZFN9	Streptococcus_phage	1.6e-245	95.0
WP_001025785.1\|660520_660994_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_000447668.1\|661046_661355_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000142741.1\|661447_662632_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_001176342.1\|662892_663105_+	hypothetical protein	NA	NA	NA	NA
WP_000757296.1\|663222_663960_+	acid phosphatase AphA	NA	NA	NA	NA
WP_001267096.1\|664280_664799_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA
WP_000944932.1\|665635_665968_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_088181595.1\|666088_667233_-\|transposase	IS3-like element ISSag5 family transposase	Q8W6R2	Burkholderia_virus	2.4e-16	26.1

DBSCAN-SWA_3

1520410 : 1531144

Streptococcus_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000767485.1\|1520410_1521238_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	5.1e-125	78.4
WP_000287943.1\|1521278_1521635_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	5.2e-42	72.6
WP_000966772.1\|1521636_1522113_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	7.1e-39	50.9
WP_000232152.1\|1522169_1523351_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	1.1e-168	75.3
WP_001167085.1\|1523413_1523962_-	acetyltransferase	M1PSC3	Streptococcus_phage	1.1e-54	58.4
WP_000158399.1\|1524029_1525121_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.7e-165	78.0
WP_000603275.1\|1525253_1525889_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001868293.1\|1525932_1526037_-	hypothetical protein	NA	NA	NA	NA
WP_075316619.1\|1526021_1526183_+	hypothetical protein	NA	NA	NA	NA
WP_001868299.1\|1526158_1527022_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.7e-110	70.7
WP_000358198.1\|1527027_1527354_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.2e-30	61.1
WP_000364568.1\|1527384_1528248_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.5e-74	50.0
WP_000715594.1\|1528267_1528903_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.4e-66	60.1
WP_001144246.1\|1528991_1529651_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	4.7e-65	56.5
WP_000178144.1\|1529669_1530380_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.7e-18	28.1
WP_001185985.1\|1530379_1531144_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-14	24.8

DBSCAN-SWA_4

1900996 : 1918522

Streptococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000420682.1\|1900996_1901311_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0
WP_000985015.1\|1901326_1901713_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000813488.1\|1901741_1903127_+	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000879507.1\|1903129_1903282_+	hypothetical protein	NA	NA	NA	NA
WP_000398284.1\|1903304_1904510_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
WP_001009056.1\|1904552_1904774_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000342539.1\|1904890_1905388_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_000506270.1\|1905362_1905869_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000331160.1\|1905852_1908300_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000804748.1\|1908302_1910480_+	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000769868.1\|1910476_1911478_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_001863540.1\|1911474_1912410_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	2.6e-170	99.7
WP_011058339.1\|1912684_1912771_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_017647393.1\|1912786_1914706_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.4
WP_011058338.1\|1914806_1914992_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	3.9e-17	67.9
WP_001227347.1\|1915051_1915405_-	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_013670292.1\|1915609_1915681_+	hypothetical protein	NA	NA	NA	NA
WP_000804884.1\|1915909_1916332_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	1.3e-71	99.3
WP_000857133.1\|1916328_1916559_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_001845478.1\|1916784_1917036_-	hypothetical protein	NA	NA	NA	NA
WP_000814511.1\|1917019_1917223_+	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_001291561.1\|1917304_1918522_+\|transposase	transposase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0

DBSCAN-SWA_5

2037823 : 2047315

Streptococcus_phage(81.82%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000038826.1\|2037823_2038201_-	DUF1492 domain-containing protein	Q7Y4J3	Streptococcus_phage	3.2e-10	37.9
WP_000891152.1\|2038334_2038823_-	hypothetical protein	A0A1X9I5V2	Streptococcus_phage	3.5e-49	59.3
WP_001258764.1\|2038895_2039453_-	hypothetical protein	A0A1X9I5U4	Streptococcus_phage	2.7e-29	58.9
WP_000694573.1\|2039610_2039784_-	hypothetical protein	A0A1X9I5U0	Streptococcus_phage	4.3e-10	56.1
WP_001069293.1\|2039780_2040038_-	hypothetical protein	NA	NA	NA	NA
WP_000656430.1\|2040330_2041725_-	hypothetical protein	W8CQP1	Croceibacter_phage	3.7e-43	33.7
WP_001029296.1\|2041736_2042594_-	hypothetical protein	A0A1X9I6L2	Streptococcus_phage	3.0e-120	72.9
WP_001100460.1\|2042594_2042867_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	1.8e-18	56.8
WP_001157003.1\|2043207_2043399_-	hypothetical protein	NA	NA	NA	NA
WP_001256559.1\|2043401_2043623_-	hypothetical protein	NA	NA	NA	NA
WP_000877499.1\|2043619_2043952_-	hypothetical protein	NA	NA	NA	NA
WP_001259478.1\|2044028_2044535_-	hypothetical protein	A0A1X9I5V7	Streptococcus_phage	4.5e-07	35.4
WP_000130289.1\|2044623_2044797_-	hypothetical protein	NA	NA	NA	NA
WP_001021393.1\|2044895_2045534_-	Bro-N domain-containing protein	NA	NA	NA	NA
WP_001258609.1\|2045769_2046372_-	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	6.7e-42	46.7
WP_000909285.1\|2046387_2046573_-	hypothetical protein	A0A1X9I5U7	Streptococcus_phage	6.2e-07	54.8
WP_001080836.1\|2046727_2047315_+	helix-turn-helix domain-containing protein	A0A1X9I5U6	Streptococcus_phage	4.0e-15	37.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013908

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection