CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018777	Staphylococcus condimenti strain StO 2014-01 plasmid pStO2014-01, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP018776	Staphylococcus condimenti strain StO 2014-01 chromosome, complete genome	1 crisprs	csa3,WYL,cas14j,DEDDh,cas3,c2c9_V-U4,DinG	0	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018776_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018776_1

2597862-2597940

Orphan

Consensus_repeat	Method
TTTTTAGAGGTTTTCTAGAGGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018776_1

>merge|NZ_CP018776|1|2597862-2597940|CRISPRCasFinder
TTTTTAGAGGTTTTCTAGAGGTTTTTAATTATTCATCAAACTATATCCTTAATTTCGCGAGAGGTTTTCTAGAGGTTTT

>NZ_CP018776|1|1|2597862-2597940|CRISPRCasFinder
TTTTTAGAGGTTTTCTAGAGGTTTT	TAATTATTCATCAAACTATATCCTTAATT
TCGCGAGAGGTTTTCTAGAGGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018776.1\|WP_047132263.1\|2608709_2609090_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
NZ_CP018776.1\|WP_047132260.1\|2604629_2606096_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP018776.1\|WP_103163116.1\|2611250_2612642_+\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP018776.1\|WP_047132256.1\|2597404_2597809_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240032
NZ_CP018776.1\|WP_130135361.1\|2588089_2589094_-\|beta-channel-forming-cytolysin	unknown	unknown	gnl\|CDD\|273388
NZ_CP018776.1\|WP_047132250.1\|2590257_2592156_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP018776.1\|WP_047132265.1\|2609980_2610955_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018776.1\|WP_063164644.1\|2595784_2595904_-\|YydF-family-exported-signaling-peptide	unknown	unknown	gnl\|CDD\|188592
NZ_CP018776.1\|WP_047132251.1\|2592626_2593349_-\|peptide-ABC-transporter-permease	unknown	unknown	unknown
NZ_CP018776.1\|WP_126498528.1\|2587061_2587736_-\|phosphoadenylyl-sulfate-reductase	unknown	unknown	gnl\|CDD\|129526
NZ_CP018776.1\|WP_047132255.1\|2596647_2597244_-\|complement-inhibitor-SCIN-family-protein	unknown	unknown	unknown
NZ_CP018776.1\|WP_047132262.1\|2607399_2607978_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP018776.1\|WP_070704617.1\|2606129_2607398_-\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP018776.1\|WP_047132264.1\|2609197_2609863_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018776.1\|WP_070704623.1\|2594763_2595726_-\|YydG-family-peptide-radical-SAM-peptide-maturase	unknown	unknown	gnl\|CDD\|188593
NZ_CP018776.1\|WP_052766757.1\|2589086_2590079_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369625
NZ_CP018776.1\|WP_047132257.1\|2601137_2601761_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP018776.1\|WP_047132252.1\|2593364_2594000_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP018776.1\|WP_070704620.1\|2598758_2600258_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225420
NZ_CP018776.1\|WP_047132259.1\|2603071_2604613_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614

Protein	Function_ID	Function_description	E-value
NZ_CP018776.1\|WP_047132263.1\|2608709_2609090_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	1.54242e-05
NZ_CP018776.1\|WP_047132260.1\|2604629_2606096_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP018776.1\|WP_103163116.1\|2611250_2612642_+\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP018776.1\|WP_130135361.1\|2588089_2589094_-\|beta-channel-forming-cytolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	4.17876e-87
NZ_CP018776.1\|WP_047132259.1\|2603071_2604613_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP018776.1\|WP_063164644.1\|2595784_2595904_-\|YydF-family-exported-signaling-peptide	gnl\|CDD\|188592	TIGR04077, hypothetical_protein_HMPREF0348_0872, exported signaling peptide, YydF/SAG_2028 family. This family describes a rare family of small proteins, about 50 residues in length, that includes YydF from Bacillus subtilis and SAG_2028 from Streptococcus agalactiae 2603V/R. Mutational analysis and genomic context show that members of this family likely are modified by a (variably present) radical SAM enzyme, are exported by an ABC transporter, and serve as signaling peptide. The member from Bacillus subtilis induces the LiaRS two-component system. [Regulatory functions, Protein interactions].	5.91382e-13
NZ_CP018776.1\|WP_126498528.1\|2587061_2587736_-\|phosphoadenylyl-sulfate-reductase	gnl\|CDD\|129526	TIGR00434, Phosphoadenosine_phosphosulfate_reductase, phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS. [Central intermediary metabolism, Sulfur metabolism].	1.42114e-109
NZ_CP018776.1\|WP_047132256.1\|2597404_2597809_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.66716e-22
NZ_CP018776.1\|WP_047132262.1\|2607399_2607978_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	6.77236e-115
NZ_CP018776.1\|WP_070704617.1\|2606129_2607398_-\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	3.65209e-169
NZ_CP018776.1\|WP_070704623.1\|2594763_2595726_-\|YydG-family-peptide-radical-SAM-peptide-maturase	gnl\|CDD\|188593	TIGR04078, radical_SAM_domain_protein_protein, peptide modification radical SAM enzyme, YydG family. Members of this radical SAM protein family for peptide modification occur only in the context of members of family TIGR04077, which average about 50 amino acids in length. In Bacillus subtilis, this protein (YydG) appears to act on its cognate target peptide (YydF) prior to its export, and result in the creation of a signaling molecule that induces the LiaRS two-component system. [Regulatory functions, Protein interactions].	6.22093e-143
NZ_CP018776.1\|WP_052766757.1\|2589086_2590079_-\|hypothetical-protein	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	4.49347e-59
NZ_CP018776.1\|WP_047132257.1\|2601137_2601761_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	9.42494e-15
NZ_CP018776.1\|WP_047132252.1\|2593364_2594000_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.46724e-18
NZ_CP018776.1\|WP_070704620.1\|2598758_2600258_-\|hypothetical-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.1052e-31
NZ_CP018776.1\|WP_047132250.1\|2590257_2592156_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	2.92039e-23

>NZ_CP018776.1|WP_047132256.1|2597404_2597809_+|NUDIX-domain-containing-protein
MPPKHIVSASCVVLNDENNILLIKSPLRGWEIPGGQIENGETIREGVIREVKEESGIDVELTEFCGVFQNTEHSIINNLFKGEYIGGKLTTSDESLEVGFFIYTEVMEKVTWGNFTERIHLCFSEKEKPFLISF
>NZ_CP018776.1|WP_047132255.1|2596647_2597244_-|complement-inhibitor-SCIN-family-protein
MNFKQFLLSGLAVALLGSAGANVFSNQAEAASYGAYEFRDYDVTAKENLKNLLNASSYYKAMAKESGARFYQNKLNQELHFAKKQQNASNDSQVVTAINRLSAVYNEVFQIHLQTEKGSSDVQSKKTELQNLIIKANSLLTESHHSMNQDEAQLKKTVEQAKTVLNQAQPGYELVNAISSVQQGIKNVEQYKAFVNHR
>NZ_CP018776.1|WP_063164644.1|2595784_2595904_-|YydF-family-exported-signaling-peptide
MKNLEFKNLVNDSEKLAKVNDLWYFVKSKSHRWIVGSGH
>NZ_CP018776.1|WP_070704623.1|2594763_2595726_-|YydG-family-peptide-radical-SAM-peptide-maturase
MYNKSVSINLVSKCNAACAHCCFSCSPQASIKMDDSYIKETVLEFSKNPNIEVISFTGGEIFLNYKFLEELLIITKSYNKKVTLISNGFWGSSRKSLKKYFSDFKKYNVIALTISYDEYHAPFVKLESIKNIFKFRMKYPEIDVSLNMAVTKDKMSNTILSELGSSVIGVKITKFPIITVGAAKDKISKNNIHNFYNIEKDRDVLYCPGYEIVYHHDGEIYPCCSPAIFETQISLREEKYQTLERTIEKLNSNILLYIIRREGFNWFLDILKEQKLLNDFGIPLDFPSVCSVCGSLFNDQYKINFFKPYMEKYYYETIKI
>NZ_CP018776.1|WP_047132252.1|2593364_2594000_-|ATP-binding-cassette-domain-containing-protein
MKINNYSLKVKGKKLVENCDLNFYPGQINHIVGKNGVGKSQLAKDFMLNNSRNIPKSISDNTTLISSFSNIPNDITKEFLLVLLKAKFPNSSPTFSEINKILKIEEIPSKVLIKNMSDGQKQKLKLLSFLLEDNSLIILDEITNALDKKTVNEIYLFINDFIKNNPSKTIVNITHNLSDLSSIPGKYFIFKDYRIEEYLSKEEVINDYINL
>NZ_CP018776.1|WP_047132251.1|2592626_2593349_-|peptide-ABC-transporter-permease
MKLEFRKSIANKIVLTLGPLFIFLFLLGYFLPVGIDKVKSLSYGQYFFSAYTVLTEFGFLLFSFIISYFINKEYSNKNTLFYKLIGENIFSFFYKKVAILFLECLIFIFLGITVVSLIFSNFSHFILLIILFSLVVLQYILIVGTISILSPNVLISIGFSIIYWIVSIILVAVNKKIFGILAPFEASNSMYLSVEKILKNKEGLINLNDITIIIIFFMLIFIVNFIILALSKKRWLKLGM
>NZ_CP018776.1|WP_047132250.1|2590257_2592156_-|glycosyltransferase-family-2-protein
MTKDLAIIVPVYNKELFLDDTMKSIDNLDIDKSEIEVIFIDDVSTDQSLEKLKVYENEYDYVKVVELEENTGSPSTPRNVGVEVSDSKYITFLDADDWLDAEGFPKLLQQALDTQNDILFGQSLRHKDHSISKIARFSSYETAYYLVPYEIDKIFRAVGPPGKIIRASVIKENDIQFEHMKYGEDKLFFTEVIAKAQSAGMNDAVAYHVNRYGVNQSLISETDIFEKTSCNLEVLKKLFELDIPETARHNAISRIIEMDYLSRLFMNKRFLKSEDKQLFYDAFAEMETILDRHHLNIKDYLTEDKYEKVYQLLSQSDKEKAVKLIEILVKGERAPRYVSNGLVHFVLPETLQEIAPLTEEFFAVYSGTEEADGQFYEVIQLYKKMAAQISRVQLVKLGDESVTKDVGYQVRGGRLRVPTKELEEADFNFNIQITYDYYRPCTVNMNLPSAIKHHALKRQQFKAEFEDKRFKNETNQPKFVDTTKYYDENPGKVFAAKQFKVYEDVEFQKEAPREIEVGELFTVEDIQYTEKGTPRLTLKDGSVVTANKKFVSVLDEAKGKDYLIEPPRKVQVLKVCKAYNDRNFKDEAGAKFAKDDIENITKIVFSSNGTPRLKTDKGIYMTANRNFVEPIQ
>NZ_CP018776.1|WP_052766757.1|2589086_2590079_-|hypothetical-protein
MKWKEMLVTLIPASVLILGTIMPSEVIARDIKQDEIGKDGQVTKRTQVGSDINGGFTQILNFDFIDDPKYDKDALVLSTKGNIASQLEYGKFRENPLFFSQMRFPGEFGVRIHVKDNPKTEILDYLPKNNIESVDVSETFGYNIGGSISSNESGSITGGVNYSKTINYKQNNYRTLLSSDTSNQSVGWNVIASSLFYNGHTNVRGDLNLFRNDAGDRIEHDPRTFLAGKSTLPSLVRSGFTPDFLTYLSNDKQNTKTQITVRYQRLNDEIDAAFYSSNFAIVPQMGRYYMNISGNAFTATYEIDWKNKKVKMLKQESEQIGKSPLEKAGE
>NZ_CP018776.1|WP_130135361.1|2588089_2589094_-|beta-channel-forming-cytolysin
MNKMRSGILKIITLSTLLALTTGTAASLTDQAKANSNFITEVKNNGTEKVASDSMIYKRTATASDLNKHITQSLQFNFIKDESYDKETVVLKTAGNIASNARILDPYAVYTSTKRWPGEYKVSVNLPETDSTAIIDYAPRNHDETREVSDTVGFNIGGGLNIKKGGDANINAKYNFSETIKYKQDAYRTFLETPTTGKDITWGVEAYNINVRGYGPYNREKENDKLGLYGNELFLNGRKSSKNAGKNFVDQNQLPALIASSFNPEFLTVFSHDYDDKGKSIIKVKYERVMDDYLITWKTFYWKGFNNKNVAKESITVAYEIDWDNHNVKVIGAV
>NZ_CP018776.1|WP_126498528.1|2587061_2587736_-|phosphoadenylyl-sulfate-reductase
MNIFDETKGAYHVLKWAYDTYGDEIVYACSFGAEGIVLIDLISQVKPDARIVFLDTGLHFEETYDLIDRVKAKYPELNIELKKPDLTVDEQAEHYGDNLWRRDPNQCCYIRKVKPLEEVLTGQIAWVSGLRREQSPTRANTDFLNKDERFQSVKVCPLIHWTWDNVWDYIKSNELPYNTLHDQNYPSIGCAPCTSPVAAGGDSREGRWSNNMKTECGLHVGRKS
>NZ_CP018776.1|WP_070704620.1|2598758_2600258_-|hypothetical-protein
MEQEFLNEGTTIEYKKAQDGVPKSFWETYSSFSNTEGGTIYLGVSEEKQGCVVTGVKNANQYIQTIVDTANDKKFTNFNNIYNSNIKVLKEDGLEYIKIYIPEVKSENKPLHVKNNINNSYIRRNDSDHKMSGEEIRRFLRDADPKSDSELLSNFNIDDLDLDAVKKYKNLIHERNSDMDILSMDNWEFLKRYGAVGKDRIENEFKLKKGALLFFGKEQAILDVFPNFHLDYRNRTHYSEDERWIDRVASGEVGNEEVNLFNFYNTVLNRLVNTVLDGFALNPETQVRQGVKTDVEVSLREALANLLIHADYEDNSSIIVEAYKNNYVFINPGELLVTKEEFARGGESNPRNSTIVTLFRKAGYSERAGSGGMKIFRAALKNKFRMPEIHSSEGKTKLKIWKIDLVDSYENLIEQEKTILRYIVKENRKIKMKEIEALEGFTEYIAKTNVNSLIDKGIVKKFGKSRSTTYGLKPNSSEMIANIEHNMRNMQESIINENR
>NZ_CP018776.1|WP_047132257.1|2601137_2601761_+|helix-turn-helix-domain-containing-protein
MENRIAELRKEKNMTLKQLAEELNIRDNTLSQYETGKRNPQSGLLQEIANFFGVSMEYILKATDKRDYPIVDNSSAIELLEKIANEKEFNYSHISKNTALNLSLWIINNMDYIKEQHPNLLYTASFLVKSTISENKILQHYSEMRKKQFKIVDEIDDILLEREFYGASVEQVLEFLHQSERIGYEHTKKLMEYIRQLPTDEYEDEDF
>NZ_CP018776.1|WP_047132259.1|2603071_2604613_-|glutamine-hydrolyzing-GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSYTIDPEIYNLGVPVLGICYGMQLTTKLLGGKVERANEREYGKAIIHAKADELFFGLPEEQTVWMSHSDKVIEIPEGFESIADSPSTPYAAIEDKERRIYGVQFHPEVRHTEYGNDILRNFVRRICDCTGEWTMENFIDLEIEKIREQVGDRKVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMDKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMQFELIEPINTLFKDEVRALGIELGIPEHLVWRQPFPGPGLGIRVLGEITEEKLEIVRESDAILREVIREEGLEREIWQYFTVLPGMRSVGVMGDYRTYDYTIGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDVTSKPPSTIEWE
>NZ_CP018776.1|WP_047132260.1|2604629_2606096_-|IMP-dehydrogenase
MWENKFAKESLTFDDVLLIPAESNVLPKEVDLSVELSDRIKLNIPVVSAGMDTVTESKMAIAMARQGGLGVVHKNMNIEDQADEVQKVKRSENGVISNPFFLTPEEKVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKISDVMTKEDLITAPVGTTLDEAEAILQKHKIEKLPLTENGKLKGLITIKDIEKVHEYPFAAKDSLGRLLCAAAIGISKDTDIRAEKLVEAGVDALVIDTAHGHSQGVIDQVKHIKQTYPEVTVIAGNVATGEATKALFEAGADVVKVGIGPGSICTTRIVAGVGVPQITAVYDCATEARKQGKAIIADGGIKFSGDIVKALAAGGHAVMLGSLLAGTEESPGETEIFQGRQYKTYRGMGSLGAMESGSNDRYFQEDKVPKKYVPEGIEGRIAYKGLLQDNIYQLMGGVRSGMGYTGSHNLKELREEAMFTRMGPAGLAESHPHNIQITKESPNYSR
>NZ_CP018776.1|WP_070704617.1|2606129_2607398_-|purine-permease
MKNFVLSLQHLLAMYAGAILVPIIVGTSLKFTPEEIAYLVTVDIFMCGVATFLEANKITGTGLPIVLGCTFTAVAPMILIGQTKGLDVLYGSLFISGILVVLIAPVFSFVVKFFPPVVTGSVVTIIGINLMPVAMNYVAGGQGSKDYGDMKNIILGFATLLIILILQRFTRGFLKSIAILIGLFAGTALAGVFGVVDLNQVGTAHWFELPRPFRFAGFGFDLGATLVFFIVALVSLIESTGVYTALSKITGRTLERKDYRKGYTAEGLAIILGSIFNAFPYTAYSQNVGLVSLSGVKKNNVIYGMVILLLICGCIPKLGALANVIPLPVLGGAMIAMFGMVMAYGVSILGGIDFKNQNNLLIIAVSVGLGTGISAVPEAFKAMGEQFAWLTQNGIVLGAISAIILNFFFNGLKYQQNEENVK
>NZ_CP018776.1|WP_047132262.1|2607399_2607978_-|xanthine-phosphoribosyltransferase
MEALRQKVKEDGVVIGEKILKVDGFLNHQIDAQLMYDIGETFYEQFKDQKVTKILTVEASGIAPAIMVAYKFGVPCLFAKKAKPNTLNKGFYQTDIHSFTKNKTNSVIISEEFLGEHDRVLIIDDFLANGDASLGLNRLVHQAGAETVGVGIVVEKSFQQGRTRLEEAGLKVSSLCEVASLSGNKVTLVGEE
>NZ_CP018776.1|WP_047132263.1|2608709_2609090_+|hypothetical-protein
MADILILTSQDEIFDALKRKLDEGYTKDELSVISKNKLHIDSVESTDMKVQSTSGTFSDRVARLLTGEDGEEAVLAHYDLTDTEKKVCKREILNGNIIILAGKHPHSRKEFKNEYDEKKPEKEYEI
>NZ_CP018776.1|WP_047132264.1|2609197_2609863_+|hypothetical-protein
MEFKLIKQTSDPLYEAALNLYDNYQFGNVRQQHHVFKQSLENKRTKNDYVFIVGLDNDEVVSLATAHYEATTNSAFIIYLVAIDTPEREQYLTDTLAQVQNELDHLAERVHNREVNFFMMEALPLPESTEEKDADLLFKRHRFLNDHGFEEQTEIDYKRPGLDKEMPPIALNLFLHTRIPLTKDIYATSVKSCYILKYVFANHLSRKRVYPLLEEMDLRKS
>NZ_CP018776.1|WP_047132265.1|2609980_2610955_+|hypothetical-protein
MLTKEFAQRVDLSEKQVRKIVQHLEERGYHLNKTEYRGREATDFQEEDIELFKEIADKVKKTNSYELAFEELEKENDFLQIVVKEDNEKLPSDQNFAKILNDLHNDISKMREERQMLGQMISQVHQQQKDLQTLQQQMTDKLDQHAETLKAIETAQQEHAKAVADNTKAVESNTAKVLAQPKETKKEEQKTPSAESAKNEPAKTTSSNDKQNSTADFKGAAVSAQPEKKEENKSASAVQSEAKPEASATTASNKEDSASTENKTASDKSDQKEQKSVSAAEMQETPETTTPEPEIPVDAPRNEHQPTAQHKQEKKGFFARLFGM
>NZ_CP018776.1|WP_103163116.1|2611250_2612642_+|L-cystine-transporter
MHLGFIILNIIVFLLLIIGLFFMAKKHVAFSKRVFAALGIGIVLGTILHLAYGSDSKIITTTTDWFSIVGDGYVALLQMIVMPLIFISIVAAFTKIQLGEKFAKIGFFIFVFLIGTVAVAAIIGIISALVFGLDASSIDLGSAEHARGTEISQKAKEMTASTLPQQILELLPSNPFLDFTGQRTTSTIAVVIFATFIGFAYLRVARKQPDNGHIIKRAIEAVYAVIMSVVTFVLRLTPYGILAIMASTIATSDFGAIWTLGKFVLASYAALITMFIIHLIIVGLLGLNPWRYLRKTAEVLIFAFTSRSSAGALPLNVQTQKSRLGVPEGIANLSASFGLSIGQNGCAGIYPAMLAVMVAPVAHVQVDFQFIITLIAVVVICSFGVAGVGGGATFAAILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGAGTAKLTKNLDKEKFNSNQYGDLSTDY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018776_1	1.1\|2597887\|29\|NZ_CP018776\|CRISPRCasFinder	2597887-2597915	29	NC_007021	Staphylococcus phage Twort, complete genome	81319-81347	7	0.759
NZ_CP018776_1	1.1\|2597887\|29\|NZ_CP018776\|CRISPRCasFinder	2597887-2597915	29	MT151386	Staphylococcus virus Twort, complete genome	123848-123876	7	0.759

1. spacer 1.1|2597887|29|NZ_CP018776|CRISPRCasFinder matches to NC_007021 (Staphylococcus phage Twort, complete genome) position: , mismatch: 7, identity: 0.759

taattattcatcaaactatatccttaatt	CRISPR spacer
aacccactcatcgaactatatccttaata	Protospacer
 * ..*.*****.***************

2. spacer 1.1|2597887|29|NZ_CP018776|CRISPRCasFinder matches to MT151386 (Staphylococcus virus Twort, complete genome) position: , mismatch: 7, identity: 0.759

taattattcatcaaactatatccttaatt	CRISPR spacer
aacccactcatcgaactatatccttaata	Protospacer
 * ..*.*****.***************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

645565 : 706107

Bacillus_phage(30.0%)

protease,transposase,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047131605.1\|645565_646675_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	W5R8S3	Staphylococcus_phage	3.0e-144	67.8
WP_070705033.1\|646872_647520_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_047131604.1\|647735_648728_+	D-2-hydroxyacid dehydrogenase	Q89388	Paramecium_bursaria_Chlorella_virus	7.9e-40	30.8
WP_047131603.1\|648779_650576_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.6e-46	29.7
WP_103163133.1\|650577_652347_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.0e-46	27.6
WP_047131601.1\|652401_652683_-	N-acetyltransferase	NA	NA	NA	NA
WP_047131645.1\|652974_654000_+	zinc ABC transporter solute-binding protein	NA	NA	NA	NA
WP_047131600.1\|654160_654595_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_070704982.1\|654662_655556_+	ring-cleaving dioxygenase	NA	NA	NA	NA
WP_047131598.1\|655980_657414_+	melibiose:sodium transporter MelB	NA	NA	NA	NA
WP_083317853.1\|657429_658275_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_047131597.1\|658366_661375_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	3.6e-128	31.0
WP_047131596.1\|661434_663387_-	fructose-bisphosphatase class III	NA	NA	NA	NA
WP_047131595.1\|663615_664464_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-13	29.0
WP_047131594.1\|664460_665120_+	ABC-2 transporter permease	NA	NA	NA	NA
WP_075140901.1\|665175_665796_-	DedA family protein	NA	NA	NA	NA
WP_075140902.1\|666321_667596_+	MFS transporter	NA	NA	NA	NA
WP_047131591.1\|667743_668046_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_103163179.1\|668168_668867_+	acetolactate decarboxylase	NA	NA	NA	NA
WP_070704985.1\|669014_670916_+	FUSC family protein	NA	NA	NA	NA
WP_047131589.1\|671000_671414_+	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_047131588.1\|671639_672839_-	GTP-binding protein	NA	NA	NA	NA
WP_047131587.1\|673117_673816_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_047131586.1\|674532_676641_+\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	3.2e-115	37.9
WP_047131585.1\|676817_677426_+	hypothetical protein	NA	NA	NA	NA
WP_047131584.1\|677543_678146_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA
WP_047131583.1\|678276_678957_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_047131582.1\|678983_680519_+	gluconokinase	NA	NA	NA	NA
WP_047131581.1\|680644_682006_+	gluconate permease	NA	NA	NA	NA
WP_047131580.1\|682079_682901_+	hypothetical protein	NA	NA	NA	NA
WP_047131579.1\|682968_684201_+	acetylornithine deacetylase	NA	NA	NA	NA
WP_047131578.1\|684322_686497_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA
WP_103163146.1\|686710_688309_-	exopolyphosphatase	NA	NA	NA	NA
WP_047131577.1\|688581_689046_+	DUF1307 domain-containing protein	NA	NA	NA	NA
WP_047131576.1\|689242_690028_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_047131575.1\|690169_690910_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_103163147.1\|691042_691714_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.4e-19	35.9
WP_047131574.1\|691710_692484_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_047131573.1\|692666_693860_+	MFS transporter	NA	NA	NA	NA
WP_070704994.1\|693902_695267_-	carboxylesterase/lipase family protein	A0A0G2Y6W1	Acanthamoeba_polyphaga_mimivirus	3.2e-23	31.7
WP_047131571.1\|695372_697031_-	APC family permease	NA	NA	NA	NA
WP_047131570.1\|697538_698135_+	hypothetical protein	NA	NA	NA	NA
WP_047131569.1\|698905_700156_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.6e-21	53.8
WP_047131568.1\|700155_700791_+	ABC transporter permease	NA	NA	NA	NA
WP_047131567.1\|700808_701750_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_047131566.1\|701749_702433_+	ABC transporter permease	NA	NA	NA	NA
WP_047131565.1\|702517_703288_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_047131564.1\|703373_703925_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_047131563.1\|703926_704289_-	DUF3147 family protein	NA	NA	NA	NA
WP_047131562.1\|704307_704667_-	DUF3147 family protein	NA	NA	NA	NA
WP_047131561.1\|704947_705649_-\|holin	antiholin-like protein LrgB	NA	NA	NA	NA
WP_047131560.1\|705645_706107_-\|holin	antiholin-like murein hydrolase modulator LrgA	NA	NA	NA	NA

DBSCAN-SWA_2

1085166 : 1100559

uncultured_Caudovirales_phage(55.56%)

terminase,integrase,coat

attL 1087098:1087115|attR 1103959:1103976

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047132803.1\|1085166_1085451_+	co-chaperone GroES	A0A221S4A8	uncultured_virus	2.6e-12	35.9
WP_047132804.1\|1085492_1087115_+	chaperonin GroEL	A0A240F779	uncultured_virus	3.4e-157	53.2
1087098:1087115	attL	NA	NA	NA	NA
WP_075140916.1\|1087183_1088359_-\|integrase	site-specific integrase	A0A2H4JFF0	uncultured_Caudovirales_phage	1.7e-214	95.4
WP_075140917.1\|1088333_1088999_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_075140918.1\|1089149_1089371_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_075140919.1\|1089380_1090010_+	phage repressor protein	A0A1W6JPC3	Staphylococcus_phage	1.3e-59	59.7
WP_075140920.1\|1090010_1090325_+	excisionase family DNA-binding protein	A0A2H4JHK0	uncultured_Caudovirales_phage	3.2e-48	95.1
WP_049335089.1\|1090336_1090546_+	hypothetical protein	A0A2H4JD47	uncultured_Caudovirales_phage	1.6e-22	81.0
WP_075140921.1\|1090549_1090963_+	pathogenicity island protein	A0A2H4JBF1	uncultured_Caudovirales_phage	3.3e-64	92.5
WP_075140922.1\|1090962_1091271_+	DUF1474 family protein	A0A2H4JB50	uncultured_Caudovirales_phage	7.1e-24	53.4
WP_075140923.1\|1091330_1092950_+	phage resistance protein	A0A1W6JPF4	Staphylococcus_phage	7.9e-223	72.0
WP_075140924.1\|1093706_1094510_+	DNA primase	Q4ZE69	Staphylococcus_phage	1.5e-118	76.8
WP_075140925.1\|1094496_1094775_+	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	2.1e-30	66.7
WP_075141036.1\|1095226_1095868_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	6.8e-85	70.3
WP_075140926.1\|1095999_1096359_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	8.6e-29	55.0
WP_075140927.1\|1096361_1097000_+	hypothetical protein	A0A2H4JFF8	uncultured_Caudovirales_phage	4.9e-43	47.6
WP_075140928.1\|1097012_1097468_+	hypothetical protein	NA	NA	NA	NA
WP_156855812.1\|1098920_1099328_+\|terminase	phage terminase small subunit P27 family	A0A2H4JB21	uncultured_Caudovirales_phage	3.7e-52	82.0
WP_075140930.1\|1099388_1099922_+\|coat	spore coat protein	A0A2H4JB26	uncultured_Caudovirales_phage	8.7e-86	88.7
WP_075140931.1\|1099918_1100236_+	hypothetical protein	A0A2H4JEA5	uncultured_Caudovirales_phage	8.9e-46	88.6
WP_075140932.1\|1100232_1100559_+	RNA polymerase subunit sigma-70	A0A2H4JB14	uncultured_Caudovirales_phage	6.6e-28	58.7
1103959:1103976	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1235323 : 1266830

Staphylococcus_phage(96.15%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047131956.1\|1235323_1236712_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	8.5e-165	59.9
WP_047131955.1\|1236715_1237723_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.3e-93	51.9
WP_047131954.1\|1237719_1237977_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.3e-30	70.6
WP_075140937.1\|1238066_1238540_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	5.3e-34	46.4
WP_047131953.1\|1238523_1239300_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	3.3e-94	65.3
WP_070703981.1\|1239350_1240943_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	7.7e-255	78.8
WP_047131951.1\|1241330_1242527_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.2e-188	82.1
WP_047131950.1\|1242624_1243524_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	4.0e-99	74.8
WP_047131949.1\|1243652_1244495_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.5e-111	68.6
WP_103163164.1\|1245473_1245818_-	CrcB family protein	NA	NA	NA	NA
WP_047131947.1\|1245822_1246194_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	7.3e-39	67.8
WP_047131946.1\|1246263_1246569_-	hypothetical protein	NA	NA	NA	NA
WP_047131945.1\|1246753_1247470_+	transaldolase	M1PR54	Cyanophage	2.9e-20	35.1
WP_047131944.1\|1247597_1248050_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	6.2e-16	42.9
WP_052766745.1\|1248033_1248477_-	hypothetical protein	NA	NA	NA	NA
WP_052766744.1\|1248469_1248970_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	1.4e-24	48.0
WP_015900622.1\|1249172_1249394_+	hypothetical protein	NA	NA	NA	NA
WP_047131942.1\|1249712_1250558_+	autolysin	A0A1W6JQU5	Staphylococcus_phage	1.8e-40	43.3
WP_070703984.1\|1250685_1252167_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	6.5e-14	64.5
WP_047131940.1\|1252572_1253622_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-118	58.3
WP_047131939.1\|1253628_1254261_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.3e-72	63.3
WP_047131938.1\|1254276_1255458_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.2e-169	71.8
WP_047131937.1\|1255489_1255948_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.3e-57	78.3
WP_047131936.1\|1256012_1257011_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	1.3e-114	64.2
WP_047131935.1\|1257266_1258097_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_047131934.1\|1258289_1259246_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_047131933.1\|1259310_1259868_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	3.6e-58	59.5
WP_047131932.1\|1259872_1260829_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	4.3e-67	85.9
WP_047131931.1\|1261097_1262276_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	8.2e-169	76.0
WP_047131930.1\|1262764_1265179_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	85.8
WP_047131929.1\|1265199_1265517_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.3e-33	69.5
WP_047131964.1\|1265573_1266830_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	1.9e-38	73.5

DBSCAN-SWA_4

1379942 : 1389083

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047131841.1\|1379942_1380959_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	8.5e-05	29.1
WP_047131840.1\|1380948_1381974_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_015900497.1\|1381989_1383132_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.4e-87	45.5
WP_082107853.1\|1383145_1383406_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	6.3e-05	41.0
WP_047131838.1\|1383857_1386134_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.0e-30	36.1
WP_047131837.1\|1386268_1388545_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.9e-76	31.2
WP_047131836.1\|1388564_1389083_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	6.2e-28	45.1

DBSCAN-SWA_5

1504935 : 1513512

Staphylococcus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047131033.1\|1504935_1505835_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	2.1e-39	32.1
WP_047131034.1\|1505877_1506381_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_047131035.1\|1506653_1507100_+\|transposase	transposase	W5R8S3	Staphylococcus_phage	5.0e-34	52.1
WP_082107845.1\|1507106_1507250_+\|transposase	transposase	W0TV12	Staphylococcus_phage	2.1e-10	65.2
WP_047131036.1\|1507509_1508247_+	segregation protein A	NA	NA	NA	NA
WP_047131037.1\|1508230_1508779_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.9e-07	30.3
WP_047131038.1\|1508771_1509509_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_103163165.1\|1509815_1510538_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.8e-46	41.5
WP_047131040.1\|1510521_1512276_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.9e-20	32.7
WP_047131041.1\|1512574_1513123_+	ECF transporter S component	NA	NA	NA	NA
WP_047131042.1\|1513263_1513512_-	ferredoxin	A0A127AYY7	Bacillus_phage	1.5e-16	52.0

DBSCAN-SWA_6

1943503 : 2016172

Staphylococcus_virus(31.25%)

transposase,head,holin,plate,tail,terminase,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075140964.1\|1943503_1944982_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.6e-73	48.2
WP_047132389.1\|1944999_1945566_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.1e-30	39.7
WP_047132388.1\|1945562_1946600_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.2e-69	43.5
WP_070704561.1\|1946604_1948026_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.5e-47	31.0
WP_047132386.1\|1948004_1950194_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-138	39.5
WP_047132385.1\|1950186_1950858_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_015899943.1\|1950857_1951124_-	phosphoribosylformylglycinamidine synthase subunit PurS	A0A1B1IU82	uncultured_Mediterranean_phage	2.9e-05	35.0
WP_047132384.1\|1951123_1951828_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	2.1e-50	46.4
WP_047132383.1\|1951827_1952955_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_041612960.1\|1952941_1953424_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	3.1e-21	44.0
WP_047132382.1\|1953632_1954490_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	8.4e-38	38.8
WP_047132381.1\|1954606_1955683_-	M42 family metallopeptidase	NA	NA	NA	NA
WP_063164607.1\|1955901_1957218_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	8.0e-48	32.2
WP_047132933.1\|1957293_1958442_-	nitric oxide dioxygenase	NA	NA	NA	NA
WP_047132932.1\|1958827_1959145_+	DUF5011 domain-containing protein	NA	NA	NA	NA
WP_047132931.1\|1959445_1960558_+	cytochrome aa3 quinol oxidase subunit II	NA	NA	NA	NA
WP_070704051.1\|1960557_1962540_+	cytochrome aa3 quinol oxidase subunit I	NA	NA	NA	NA
WP_047132929.1\|1962532_1963135_+	cytochrome aa3 quinol oxidase subunit III	NA	NA	NA	NA
WP_047132928.1\|1963131_1963422_+	cytochrome aa3 quinol oxidase subunit IV	NA	NA	NA	NA
WP_047132927.1\|1963558_1964467_+	ribonucleoside hydrolase RihC	NA	NA	NA	NA
WP_047132926.1\|1964547_1965300_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_047132925.1\|1965492_1965924_+	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_047132924.1\|1965942_1966458_+	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA
WP_047132923.1\|1966457_1967405_+	1-phosphofructokinase family hexose kinase	NA	NA	NA	NA
WP_070704053.1\|1967401_1968337_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA
WP_047132922.1\|1968472_1969762_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	2.6e-168	70.6
WP_047132921.1\|1969777_1970179_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	8.7e-46	66.7
WP_047132920.1\|1970220_1971627_-	6-phospho-beta-galactosidase	NA	NA	NA	NA
WP_075140965.1\|1972955_1974419_-	CHAP domain-containing protein	U3PDY3	Staphylococcus_phage	3.5e-209	78.8
WP_075141039.1\|1974415_1974883_-\|holin	phage holin	U3PJ27	Staphylococcus_phage	7.9e-67	79.9
WP_075140966.1\|1974939_1975338_-	hypothetical protein	A0A2H4JCM1	uncultured_Caudovirales_phage	5.2e-59	88.6
WP_075140967.1\|1975324_1975747_-	hypothetical protein	A0A2H4JID2	uncultured_Caudovirales_phage	4.7e-58	77.1
WP_156855797.1\|1975820_1975988_-	hypothetical protein	NA	NA	NA	NA
WP_047132653.1\|1975987_1976776_-	trypsin-like peptidase domain-containing protein	A0A2H4JE36	uncultured_Caudovirales_phage	2.5e-52	41.5
WP_075140968.1\|1976813_1976954_-	XkdX family protein	A0A060AB44	Staphylococcus_phage	6.8e-06	95.5
WP_052766781.1\|1976955_1977456_-	hypothetical protein	A0A2H4J9L3	uncultured_Caudovirales_phage	3.0e-40	77.7
WP_047132652.1\|1978820_1980740_-	CHAP domain-containing protein	Q4ZCC7	Staphylococcus_virus	0.0e+00	98.9
WP_015978139.1\|1980789_1981179_-	ORF043	Q4ZCC9	Staphylococcus_virus	6.0e-52	100.0
WP_075140970.1\|1981171_1981615_-	hypothetical protein	Q4ZCD0	Staphylococcus_virus	2.4e-73	91.2
WP_103163171.1\|1981626_1981758_-	XkdX family protein	NA	NA	NA	NA
WP_052766779.1\|1981750_1982125_-	hypothetical protein	NA	NA	NA	NA
WP_052766778.1\|1982135_1983572_-\|plate	BppU family phage baseplate upper protein	A0A2H4JH16	uncultured_Caudovirales_phage	2.5e-47	43.2
WP_075140971.1\|1983568_1985647_-	hypothetical protein	A0A2H4JFY2	uncultured_Caudovirales_phage	1.6e-138	61.0
WP_075140972.1\|1985649_1987152_-	hypothetical protein	Q4ZCD5	Staphylococcus_virus	2.5e-279	99.0
WP_075140973.1\|1987160_1988075_-\|tail	phage tail protein	Q4ZCD7	Staphylococcus_virus	9.5e-173	98.0
WP_075140974.1\|1988093_1991324_-\|terminase	terminase	Q4ZCD8	Staphylococcus_virus	5.4e-311	76.8
WP_156095238.1\|1991334_1991607_-	hypothetical protein	Q4ZCD9	Staphylococcus_virus	1.1e-41	100.0
WP_002480806.1\|1991675_1992173_-	hypothetical protein	Q4ZCE0	Staphylococcus_virus	4.9e-91	100.0
WP_047132645.1\|1992230_1992794_-\|tail	phage major tail protein, TP901-1 family	Q4ZCE1	Staphylococcus_virus	1.4e-97	99.5
WP_047132644.1\|1992797_1993220_-	DUF3168 domain-containing protein	Q4ZCE2	Staphylococcus_virus	1.9e-75	97.9
WP_075140975.1\|1993230_1993644_-	HK97 gp10 family phage protein	Q4ZCE4	Staphylococcus_virus	2.3e-70	89.8
WP_047132642.1\|1993630_1993966_-\|head	phage head closure protein	Q4ZCE5	Staphylococcus_virus	9.7e-59	96.4
WP_075140976.1\|1993976_1994327_-\|head,tail	phage head-tail adapter protein	M9NST9	Staphylococcus_phage	3.6e-48	75.9
WP_075140977.1\|1994468_1995404_-\|capsid	phage major capsid protein	A0A059T7K3	Staphylococcus_phage	7.2e-160	93.1
WP_075140978.1\|1995424_1996009_-	DUF4355 domain-containing protein	A0A2H4JDY6	uncultured_Caudovirales_phage	1.8e-63	81.4
WP_075140979.1\|1996108_1997056_-\|head	phage head morphogenesis protein	Q4ZC73	Staphylococcus_virus	1.7e-156	89.2
WP_083606709.1\|1997018_1998449_-\|portal	phage portal protein	A0A0N9BB70	Staphylococcus_phage	1.5e-212	77.4
WP_075140981.1\|1998445_1999669_-\|terminase	PBSX family phage terminase large subunit	A0A059T7K2	Staphylococcus_phage	7.6e-226	91.6
WP_075140982.1\|1999661_2000156_-\|terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	7.9e-65	78.0
WP_083606711.1\|2000388_2000793_-	sigma-70 family RNA polymerase sigma factor	A0A1J0MFD1	Staphylococcus_phage	1.9e-40	62.4
WP_156483157.1\|2000808_2000946_-	hypothetical protein	NA	NA	NA	NA
WP_075140983.1\|2000945_2001416_-	Holliday junction resolvase RecU	A0A2H4J2G2	uncultured_Caudovirales_phage	2.0e-33	48.1
WP_156855815.1\|2001412_2001595_-	hypothetical protein	NA	NA	NA	NA
WP_075140985.1\|2001594_2002065_-	hypothetical protein	NA	NA	NA	NA
WP_075140986.1\|2002049_2002226_-	transcriptional regulator	A0A1W6JPC7	Staphylococcus_phage	2.6e-18	74.1
WP_156855799.1\|2002218_2002368_-	DUF1381 domain-containing protein	A0A2H4J5E2	uncultured_Caudovirales_phage	6.7e-12	83.7
WP_075140987.1\|2002364_2002676_-	hypothetical protein	A0A1W6JNQ0	Staphylococcus_phage	1.2e-47	92.2
WP_083606714.1\|2002734_2003709_-	hypothetical protein	I6SB84	Staphylococcus_virus	5.4e-41	78.3
WP_047132961.1\|2003683_2003905_-	hypothetical protein	NA	NA	NA	NA
WP_047132962.1\|2003905_2004148_-	hypothetical protein	NA	NA	NA	NA
WP_103163183.1\|2004144_2004345_-	hypothetical protein	Q4ZC85	Staphylococcus_virus	1.5e-22	74.2
WP_063164621.1\|2004328_2004733_-	hypothetical protein	A0A141E233	Streptococcus_phage	8.0e-15	34.2
WP_075140988.1\|2004729_2005140_-	hypothetical protein	NA	NA	NA	NA
WP_063164622.1\|2005126_2005321_-	hypothetical protein	Q4ZC88	Staphylococcus_virus	2.8e-10	56.7
WP_047131743.1\|2005307_2006030_-	HNH endonuclease	NA	NA	NA	NA
WP_052766743.1\|2006052_2006295_-	hypothetical protein	Q4ZC89	Staphylococcus_virus	4.0e-06	38.3
WP_075140989.1\|2006285_2006876_-	hypothetical protein	NA	NA	NA	NA
WP_156855801.1\|2006881_2007058_-	hypothetical protein	NA	NA	NA	NA
WP_156855803.1\|2007058_2007232_-	hypothetical protein	Q4ZC95	Staphylococcus_virus	4.4e-07	48.2
WP_075140990.1\|2007225_2007999_-	AAA family ATPase	A0A1W6JP70	Staphylococcus_phage	1.0e-106	80.9
WP_083606721.1\|2008009_2008687_-	helix-turn-helix domain-containing protein	A0A2H4IYS0	uncultured_Caudovirales_phage	1.6e-84	86.7
WP_075140992.1\|2008733_2008946_-	helix-turn-helix transcriptional regulator	H9A0L7	Staphylococcus_phage	2.4e-15	62.9
WP_075140993.1\|2008932_2009616_-	hypothetical protein	Q4ZC99	Staphylococcus_virus	8.5e-102	76.4
WP_075140994.1\|2009630_2010155_-	DUF669 domain-containing protein	A9CR64	Staphylococcus_phage	7.8e-71	76.4
WP_075140995.1\|2010177_2010951_-	AAA family ATPase	A0A0H4ITW3	Staphylococcus_phage	1.2e-120	84.4
WP_046100092.1\|2010943_2011168_-	DUF2483 domain-containing protein	Q4ZCA2	Staphylococcus_virus	1.2e-20	69.4
WP_075140996.1\|2011124_2011352_-	hypothetical protein	NA	NA	NA	NA
WP_075140997.1\|2011418_2011601_-	hypothetical protein	NA	NA	NA	NA
WP_075140998.1\|2011699_2012446_-	oxidoreductase	A0A2H4J9M3	uncultured_Caudovirales_phage	1.3e-100	70.8
WP_053464139.1\|2012446_2012677_-	helix-turn-helix transcriptional regulator	U3PDM7	Lactobacillus_phage	7.7e-07	44.3
WP_075140999.1\|2012862_2013201_+	helix-turn-helix transcriptional regulator	A0A097BY22	Enterococcus_phage	4.2e-09	45.8
WP_075141000.1\|2013215_2013683_+	ImmA/IrrE family metallo-endopeptidase	H9A0K3	Staphylococcus_phage	4.7e-43	57.3
WP_075141001.1\|2013695_2014682_+	DUF5067 domain-containing protein	A0A1W6JP83	Staphylococcus_phage	7.1e-57	62.4
WP_075141002.1\|2014777_2016172_+	recombinase family protein	A0A2H4JD28	uncultured_Caudovirales_phage	6.0e-126	49.2

DBSCAN-SWA_7

2255675 : 2264532

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047132779.1\|2255675_2256644_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	5.4e-134	76.9
WP_047132708.1\|2256933_2257908_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	2.7e-173	93.2
WP_047132709.1\|2258049_2260155_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	87.2
WP_047132780.1\|2260126_2260519_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.6e-44	68.5
WP_047132710.1\|2261398_2262286_+	DMT family transporter	NA	NA	NA	NA
WP_047132711.1\|2262288_2262792_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	6.0e-52	65.0
WP_047132712.1\|2263011_2264532_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.2e-73	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage