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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017007 Pseudomonas syringae pv. actinidiae strain ICMP 20586 chromosome, complete genome 1 crisprs RT,csa3,PD-DExK,DEDDh,cas3,DinG,WYL 3 0 23 0
NZ_CP017008 Pseudomonas syringae pv. actinidiae strain ICMP 20586 plasmid pPsa20586, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP017007
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017007_1 1826366-1826527 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017007_1 1.3|1826485|23|NZ_CP017007|PILER-CR 1826485-1826507 23 NZ_CP017007.1 5521832-5521854 0 1.0
NZ_CP017007_1 1.1|1826387|23|NZ_CP017007|PILER-CR 1826387-1826409 23 NZ_CP017007.1 5521930-5521952 1 0.957
NZ_CP017007_1 1.2|1826431|33|NZ_CP017007|PILER-CR 1826431-1826463 33 NZ_CP017007.1 5521876-5521908 2 0.939

1. spacer 1.3|1826485|23|NZ_CP017007|PILER-CR matches to position: 5521832-5521854, mismatch: 0, identity: 1.0

agtgctgagggcccgctttcttg	CRISPR spacer
agtgctgagggcccgctttcttg	Protospacer
***********************

2. spacer 1.1|1826387|23|NZ_CP017007|PILER-CR matches to position: 5521930-5521952, mismatch: 1, identity: 0.957

tgccgtatgatgctgattttaga	CRISPR spacer
tgccgaatgatgctgattttaga	Protospacer
***** *****************

3. spacer 1.2|1826431|33|NZ_CP017007|PILER-CR matches to position: 5521876-5521908, mismatch: 2, identity: 0.939

ggtctctcgatattcgctttctcgctgatttta	CRISPR spacer
ggtctttcgagattcgctttctcgctgatttta	Protospacer
*****.**** **********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31829 : 41522 7 Liberibacter_phage(50.0%) transposase NA
DBSCAN-SWA_2 220726 : 324803 103 Pseudomonas_phage(52.63%) terminase,lysis,protease,portal,transposase,capsid,integrase,head,tail attL 246991:247050|attR 323491:324864
DBSCAN-SWA_3 466372 : 539303 65 Pseudomonas_phage(42.42%) tRNA,transposase,lysis,tail,plate NA
DBSCAN-SWA_4 694785 : 756613 39 Ralstonia_phage(28.57%) protease,transposase NA
DBSCAN-SWA_5 1064628 : 1117136 43 Pseudomonas_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_6 1835320 : 1885134 49 uncultured_Caudovirales_phage(40.0%) transposase,integrase attL 1856513:1856526|attR 1888481:1888494
DBSCAN-SWA_7 2621818 : 2629770 9 uncultured_Caudovirales_phage(71.43%) tRNA NA
DBSCAN-SWA_8 2901647 : 2964484 56 Tupanvirus(28.57%) transposase,tRNA,integrase attL 2899568:2899627|attR 2969645:2971449
DBSCAN-SWA_9 3026359 : 3084155 45 Salmonella_phage(25.0%) transposase,plate NA
DBSCAN-SWA_10 3381459 : 3403522 17 Enterobacteria_phage(33.33%) transposase,integrase attL 3400414:3400473|attR 3404637:3404747
DBSCAN-SWA_11 3410316 : 3462565 39 Acidithiobacillus_phage(57.14%) transposase,integrase attL 3404587:3404646|attR 3462591:3462702
DBSCAN-SWA_12 3677854 : 3682397 7 uncultured_Caudovirales_phage(50.0%) tail,integrase attL 3678722:3678736|attR 3685237:3685251
DBSCAN-SWA_13 3995039 : 4052160 60 uncultured_Caudovirales_phage(50.0%) transposase,integrase attL 3996451:3996510|attR 4050316:4051982
DBSCAN-SWA_14 4110280 : 4170636 40 Acidithiobacillus_phage(22.22%) transposase NA
DBSCAN-SWA_15 4597348 : 4630471 26 Pseudomonas_virus(25.0%) transposase NA
DBSCAN-SWA_16 4633524 : 4689468 43 uncultured_Caudovirales_phage(22.22%) protease,transposase,tRNA NA
DBSCAN-SWA_17 4826037 : 4891412 51 Pseudomonas_phage(28.57%) protease,transposase,tRNA NA
DBSCAN-SWA_18 5003414 : 5070641 60 Acidithiobacillus_phage(28.57%) transposase NA
DBSCAN-SWA_19 5126380 : 5264068 112 Pseudomonas_phage(17.39%) transposase,protease,tRNA,integrase attL 5188622:5188636|attR 5266963:5266977
DBSCAN-SWA_20 5308376 : 5318563 10 Burkholderia_virus(37.5%) NA NA
DBSCAN-SWA_21 5542744 : 5552106 11 uncultured_Caudovirales_phage(71.43%) integrase attL 5538135:5538148|attR 5544845:5544858
DBSCAN-SWA_22 6138510 : 6208205 56 Bacillus_virus(28.57%) holin,transposase NA
DBSCAN-SWA_23 6510326 : 6641325 93 Acidithiobacillus_phage(18.75%) transposase,protease,integrase attL 6576039:6576054|attR 6639491:6639607
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage