CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018621	Paenibacillus xylanexedens strain PAMC 22703 plasmid unnamed, complete sequence	1 crisprs	RT	0	1	0	0
NZ_CP018620	Paenibacillus xylanexedens strain PAMC 22703 chromosome, complete genome	5 crisprs	DinG,WYL,cas3,csa3,Cas14u_CAS-V,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	0	7	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018621_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018621_1

6288-6377

Orphan

Consensus_repeat	Method
GTCGCTCCTGTTCAGGAGCGTGGATTGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018621_1

>merge|NZ_CP018621|1|6288-6377|CRISPRCasFinder
GTCGCTCCTGTTCAGGAGCGTGGATTGAAATAGAGTTGTATATTTGTTTTTGAAAGAAACGTCGCTCCTGTTTAGGAGCGTGGATTGAAA

>NZ_CP018621|1|1|6288-6377|CRISPRCasFinder
GTCGCTCCTGTTCAGGAGCGTGGATTGAAA	TAGAGTTGTATATTTGTTTTTGAAAGAAAC
GTCGCTCCTGTTTAGGAGCGTGGATTGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018621.1\|WP_074097108.1\|2279_3611_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP018621.1\|WP_074097075.1\|13460_15839_+\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|378923
NZ_CP018621.1\|WP_074097078.1\|17174_17639_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372239
NZ_CP018621.1\|WP_074097074.1\|12718_13456_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379384
NZ_CP018621.1\|WP_074097068.1\|4597_5182_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018621.1\|WP_074097071.1\|6858_7776_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378704
NZ_CP018621.1\|WP_074097077.1\|16936_17161_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018621.1\|WP_074097070.1\|5736_6225_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018621.1\|WP_084174986.1\|8300_9464_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_CP018621.1\|WP_074097072.1\|7905_8304_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018621.1\|WP_074097073.1\|10175_11582_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240129
NZ_CP018621.1\|WP_157116404.1\|4188_4440_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018621.1\|WP_074097069.1\|5422_5608_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	unknown	unknown	gnl\|CDD\|378175
NZ_CP018621.1\|WP_074097065.1\|1679_1901_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP018621.1\|WP_074097079.1\|17655_20247_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|315512
NZ_CP018621.1\|WP_074097076.1\|15857_16925_+\|conjugal-transfer-protein	unknown	unknown	gnl\|CDD\|372237
NZ_CP018621.1\|WP_074097064.1\|612_1158_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018621.1\|WP_074097108.1\|2279_3611_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.00102491
NZ_CP018621.1\|WP_074097078.1\|17174_17639_+\|hypothetical-protein	gnl\|CDD\|372239	pfam12648, TcpE, TcpE family. This family of proteins includes TcpE a conjugative transposon membrane protein.This family of proteins is found in bacteria. Proteins in this family are typically between 122 and 168 amino acids in length.	4.12545e-05
NZ_CP018621.1\|WP_074097079.1\|17655_20247_+\|hypothetical-protein	gnl\|CDD\|315512	pfam12846, AAA_10, AAA-like domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.	2.19982e-60
NZ_CP018621.1\|WP_084174986.1\|8300_9464_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	4.16465e-24
NZ_CP018621.1\|WP_074097074.1\|12718_13456_+\|hypothetical-protein	gnl\|CDD\|379384	pfam13814, Replic_Relax, Replication-relaxation. This family includes proteins which are essential for plasmid replication and plasmid DNA relaxation.	7.00188e-06
NZ_CP018621.1\|WP_074097069.1\|5422_5608_+\|aspartyl-phosphate-phosphatase-Spo0E-family-protein	gnl\|CDD\|378175	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein. Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure.	2.96193e-05
NZ_CP018621.1\|WP_074097065.1\|1679_1901_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	4.74534e-05
NZ_CP018621.1\|WP_074097075.1\|13460_15839_+\|TraM-recognition-domain-containing-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	6.54422e-10
NZ_CP018621.1\|WP_074097071.1\|6858_7776_+\|DNA-binding-protein	gnl\|CDD\|378704	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term. The broad host-range plasmid RK2 is able to replicate in and be inherited in a stable manner in diverse Gram-negative bacterial species. It encodes a number of co-ordinately regulated operons including a central control korF1 operon that represses the kfrA operon. The KfrA polypeptide is a site-specific DNA-binding protein whose operator overlaps the kfrA promoter. The N-terminus, containing an helix-turn-helix motif, is essential for function. Downstream from this family is an extended coiled-coil domain containing a heptad repeat segment which is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning.	2.76355e-11
NZ_CP018621.1\|WP_074097076.1\|15857_16925_+\|conjugal-transfer-protein	gnl\|CDD\|372237	pfam12642, TpcC, Conjugative transposon protein TcpC. This family of proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologs from Tn916, Tn5397, and CW459tet. This family of proteins is found in bacteria. Proteins in this family are typically between 302 and 351 amino acids in length.	8.41964e-26
NZ_CP018621.1\|WP_074097073.1\|10175_11582_+\|hypothetical-protein	gnl\|CDD\|240129	cd04859, Prim_Pol, Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol). These primpol domains belong to the archaeal/eukaryal primase (AEP) superfamily. This group includes archaeal plasmids and bacteriophage AEPs. The ORF904 protein is a multifunctional protein having ATPase, primase and DNA polymerase activity, and may play a role in the replication of the archaeal plasmid. The pRN1 primpol domain exhibits DNA polymerase and primase activities; a cluster of active site residues (three acidic residues, and a histidine) is required for both these activities. For pRN1 primpol, the primase activity prefers dNTPs to rNTPs; incorporation of dNTPs requires rNTP as cofactor. The pRN1 primpol contains an unusual zinc-binding stem, which is not conserved in other members of this group.	6.02099e-06

>NZ_CP018621.1|WP_074097070.1|5736_6225_+|hypothetical-protein
MQTCAYCGSAVELVGSGLYCSFCDMEVYKDDVQTNGSRRPVRAEEVVLLSAAERSTQELMEKDSYYLTVLLGLVRDERKRTYNLLRVVNRGAALKPGETAFKHGQDEGAMNYRYWTRKAWIIENILRDRAGYYPAKITDNLLNGILEQVQKSNEKPMTFSPK
>NZ_CP018621.1|WP_074097069.1|5422_5608_+|aspartyl-phosphate-phosphatase-Spo0E-family-protein
MVKKSMLMKVRIERARNRLHTLTEKHRNFQHPAVIKQSMVLDELINQYNRTGEQQIKKPIG
>NZ_CP018621.1|WP_074097068.1|4597_5182_+|hypothetical-protein
MKRIIYVAGVNRKHLAEQASSVPYWLLSATLLKKYPSWLEPYLRFRTVIWDPGTFTEDCISYQGYRAYIDRHVKSRHRYMQYDEIGNPEATEWYLKDMRSRGYRPIPILQPGGDRKMLQTEPLVFIGGLVPMNELSRMQYLDGLLSGSVRAKLHLLGMMRSEWNRRKTTAEWMLEYGEQWVPHVPRKTVQLALF
>NZ_CP018621.1|WP_157116404.1|4188_4440_+|hypothetical-protein
MIPLRCIIVQGLCELKQRRKERTGIRRFFLMESIFFPFAFRMVSAPSPTRPPAREPPATPLFTPGAKTGSHSFKGQQNFFFPF
>NZ_CP018621.1|WP_074097108.1|2279_3611_+|helix-turn-helix-transcriptional-regulator
MSHSRFSELAGINSGTLSRILQGSRPISVRQLDSITKAMGLAEDFLFDAYVEECFAFFVSIRRIRPFILRCAELGRLDCIERIVPHVLDNLSYAPPLFDVAEELFASKHHQAAALLYDNVSKGEKFQHSERLALCRYRLFLIGLGTDLESNYRAAMVFEDYVNRLHEADQLDALKRLIDVLVTVHKWKRVDELAEEMLRISQIQYELQHAGESEKKPEKPIYFYILYGWLVRSAVCEEYKDYAGALRYVSLYAKADWIREDDEEARFLINQFVEWGKANTYLYQLWSGGADALHNYANFVADHPEEIFVALSNIVQAANQFGFDIDDILERFKAYTPFQAIEGRYGQYNKSILGEKYAQFLSDLGVYKFKKDPKNPGNAINLILEGLDFSVKINSVRNMITCMTLFEQYRDYADQEEKMKFKKLASEVHRINAEKNVVPLSFV
>NZ_CP018621.1|WP_074097065.1|1679_1901_-|helix-turn-helix-transcriptional-regulator
MRIKDAREAAGYTQESIVHTINNTMKCTLRNYQNIEYGVVTPSVTLALLISHLYKIDPREVDEWKYPDERTNL
>NZ_CP018621.1|WP_074097064.1|612_1158_-|hypothetical-protein
MKSPNQEPRPVGRPAQGITKKVSLTLSEEDWNEIEESGMTYGAFVKDRIEKAKKAAILEASLAPQPPITQFERERRSVDYPRHYAEERWDIYRRFPDEELPPDDVIEAAKKSMYKVLYPNQAENAVLETRDQFICPFTGKRFSSMDKLVGSAIPTLIQWAIAQQRREAERAAARERENGPK
>NZ_CP018621.1|WP_074097071.1|6858_7776_+|DNA-binding-protein
MEKSSKGVVEEMAEKLTKETIFAVADAISAEGKAVRVAEVHRRLGYGSLSTITPAVREWREQQKPAAPVEPAVVPQVVADRLTALGMELWVQAQAVAEEGLRKEREALEAYRSEIEDQQQETAEYADALNDANEVLKERYAEQKSQLEALRVEKESLANQLKTTSDQLIAAQTREQSIGEHLKDLRELLAEREAERDSTTQTARQQAEEISRLREELAVIKEREKIAEQQLVKERADTKELQGFTEQRLADERAAREQVQQDLEVCREKQQAAEVKTAKLEGEITALRAQGTTKKPGTKAKPDGQ
>NZ_CP018621.1|WP_074097072.1|7905_8304_-|hypothetical-protein
MTEPTRKHVSWRVGELKEHEKVNRWIDAQSNIQLSLASIVLHMVDRFGYRNITEHDIQKILYQEPLLTGLQSVPLAQHTAMNAIPEQPQPIVAIDTKIATNIPPLQESLEDAKPEEEEEDDPLLQQINPKSF
>NZ_CP018621.1|WP_084174986.1|8300_9464_-|ParM/StbA-family-protein
MIINDTLHSQPAVIKRLYTKPDESDKSIAAIVNNLMNELVVNISSKAIKRDGIYAVGNHANLTNTSDNMNIRLGNKHKHDIPVVMTLAMQAAHEIQNYYLTHNALPETIEVNGSLAGSIPASEWNPTKANFLEDRFTKHTHIVTVHIGKTSVVVTIKYTKSKITQEGLTGLYGFVFWKSPKKEATEKIEPPHILSKFRETYADKPELLKLTPRDFATKKGLLVDIGSGTVELIHTHGLNPVLDNCDGKKHGVGHAAEAAAKLLTEETQGYLEVNRQRFDQILQDPTDNLHAMATSFMEEAQFSEANNILVAMQDHYSTIGGDIEFIMVFGGGSITFEPDLYEEAKKFADAVHCLLVWIPGEYAVNLNVYGLNILHKKVLFQEAGVEG
>NZ_CP018621.1|WP_074097073.1|10175_11582_+|hypothetical-protein
MSIAVQSKVAQDHILRRFFRSQVQETPSRHKQSSAGRGYDFGWIYTSQDCKTYKACRSYETLDLHAQSNTYYTPNTFYRNDRRAQETLRWLNAVVLDVDTKSGQNEGLILPELLDRISAAGLPQPSLIVRTPSGGFHVHFILDQPRKAYSNAVRRYQLLQRTIAEAIGADLKAIGAERFFRIPNDSNIIFQSDSTVSFDALNDWYWINHVESRTSRSRAAGRADLGARGILQHPAFQALLRGVQIGARDQTAYTLALAFKVEGYLEEEAAAKLHTWNEILDTPLPCREIEKKVKSAFREGAKKGPKASIVTELSGIAFQYGPIWEPAKPREERKNSHFDEWANDVITSLKALPGNEIVDSQRKLAAHWGMSLSSFQHVIRMLIDSKRITVEVTGKGRAAQTVIRLVCDELEPEKIDSSSPLVSSGAKTQFFNVPSSNTLILDTVVGGAGFLLGRFIYVRGRLPGTDPP
>NZ_CP018621.1|WP_074097074.1|12718_13456_+|hypothetical-protein
MINKYTDFKAKDLEILRFILKHGIVTSKQIQTHINESGIHNVYRRLRKLESAGMIWKKKLALTLNVYFPKRDARDFMDYPVTVANDTSMYTAQHDLIINDLILHLKAKLKNQEFDYKTEREYRFELLEDRGKAEMLKKWNEIRETLPDFVILLTNHTIAVEAELNTKAVSRLQKKIDLYAREIREGKYTEVWYFVPNGTVGNAIERAKVLVAKEWGNKARSAETEAGVNVFKQISVKSLPEEVRS
>NZ_CP018621.1|WP_074097075.1|13460_15839_+|TraM-recognition-domain-containing-protein
MQRSADDDQLLQGRTDEEAKTVGQIAIAVIGLVAACFTLFALITAAVIYVGVVFGIKKKWILYTLLPVAVFGLLVIHGTHEWVALLGFMSWLQIPYVTPLAEEYLNRSQPFPVNAYSYVGTLSLGILMANVAHPFIAYYRSKIIKSKHDGLRKQKKERDYQQFRLKREKYLNKKQLQFRKSNSSENFIGYDEFQQRVALKAHEPNQHILAVATTGGGKTVLIGTNVENALRQNKPVIFMDGKGELKSMLEFKEMCEKHGRTVHMFTDVDELSFNFLRHGSPTQLRDKVMNLFEWSEPFYKTNCSRFLQLVFRMLRDFNQPIELETVYEFTARSKVARFLADQTERAKVKIEVPKREKVAKFVLDQEPLPEEQPEPESPELIGEEITEAVGEESTKEAELPEEPEPNPESEPVELTNEDLAKLLGDIPTAEPEDSAAALFGLQDEIEPVDTSMAVEAEPIRPSKESEPLVKEDVQDLPAADIPEEPPTTVDPEEEEEPVRASTLFEGLEGDAEEPSEPEVRYQVEWDEEMRAKIEYYRERFFGLEEEDDDDEPSGISFGALTSLRNQLAELIESDLGHLFVEREDGIDLKTITDNNEVAIFSISGNKYKDYIKTLGRVVIMEVNTLVDYRQKEGKKSIMSVYDEFSAYVSHEVVDVINKSRSAGFECLLSVQGLSDIDAVDPVLTRQIINNCNTYMIGRVNDPADAEVLAAACGTYEDADITSQVEKNVWKKRFESEMGTVRMVQRYRAHPDDIRGLGTGEVFLCRKTIDQDGAPYVARVYVRNALDLTGIGA
>NZ_CP018621.1|WP_074097076.1|15857_16925_+|conjugal-transfer-protein
MAKSLAKRKAAADAPQQEKVSIREKGKRFFRKLQKPKVEERKAYRPRGYRAKKFGIFVFWLMFSFVFLVFFMNAFNPSKQSDVNAQAVQQAPTLNPATTTTAVQYAENFAREYFTWKPGSEALAKRQERLAPYLAKGLDPHAGLQPTALKTTSVLLKTEIANIEEKGENQAYVTLKVYQKIGVPKEVVTTDETTKKKTTTTKYEPKEVSKFFVVPVAYAQNYGIYDLPKYTYINPQTTVVASNQTTGLQDVAESEVKQNIRNFLDTFFGSYAQDPADKLAYLLEDKDHPSGLNKRMDFVNVKNSQIYQGETPETYVVLATLVLEDPVSADRFVTNYRLDITQKDGRYVVSKIDQQ
>NZ_CP018621.1|WP_074097077.1|16936_17161_+|hypothetical-protein
MNIGFDGLLDWAKEEGGNLILVAAIFFAVLLAFKRQFIGAIGTFLVLLITYLIVTKPELIGKVAEFAAKLVGVN
>NZ_CP018621.1|WP_074097078.1|17174_17639_+|hypothetical-protein
MQQRKDMFVLNEFLKFERKLYQFAGFKVGRPLKLKSIGYFFAIAAIMVVWYYIPVLNIPLKILPSSILLAAPFMFTYLLIDVGTENRPPIKFAKSMFLYHMRKSKRVTYFKGKELDRPKSYGFGGQLSAREYRQKKKKKKRTHYQFEGYMTMRD
>NZ_CP018621.1|WP_074097079.1|17655_20247_+|hypothetical-protein
MKVFTEFPTKHIEGNLAFGRDGSVWAYFQVEGYGYDFRDFVQKIHPYNNQLSYYVENMSDLHFLMIPSLTDVNGILDETIEDIKRKDYPLKENGIDYFNRLKQTLSNQRSSRETNEYHTYIGVQLDPKKNEFRKVGNTGLALVAGVSDFINGFKSPVYRAMGLEPNDILKVDIEQYKHQAEGLRETLSQSMSSLVRMISKEETLFLIEQNFSVTPNDTKLRKGYETSMDVSGNDGERVHEAHRGRAQSFYELQNAEIEEFDQKTLKLYKMVDEEIKESYVQFLVADKMTAHSLHPGSEWMFHIQNRLRFPVAVSVKAGLMRNEQIIKNLSNVRLSYQDQREEAHKGDSEVDLNTGKAESGAIQMESRFTDTGYPAYGCSFVFRVSAKDKDQLRVRVDELKREMQSFGIHLLSPYGEMISYFMEFIPTSPRINSDYIQYVEPTKLAGMMFGATTNIGDNRGFYIGQTLKLNRPVFIQPDLAAKAFEGVNNVVDSLAMMIAGMTGKGKSFWANLYTYLCVLTGSRALIIDPKGDRKGWAAGLPFIPPEFISVWTLGADERDAGCLDPFRTSVSLQEAKDISLDILSFLCNLNLGDPGFTRLSEAVEQEGDQHDPCLGGVLYYFKGQLKIANLSDKHREAIEEIVETLETLKRTQIARLLFGEKGQDYRVLEVTKPLQVLMVQNLKLPKGNKPPRPIEKISEAILISITSFTKQYMLEQDRSIHKVIMQDESKTIENSAEGKNQMDFIVRMGRHYNTTLVKGTQNATDYDEDVSNMGMKFCFALKKIEEAEEMLRYFGLPVTPSNLEYLNSLDRGTALFQDIYGRTAAVRIHPVYKEIEEAFDSSTATQEDREYERERQEKIRMGV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018621_1	1.1\|6318\|30\|NZ_CP018621\|CRISPRCasFinder	6318-6347	30	NZ_CP018621	Paenibacillus xylanexedens strain PAMC 22703 plasmid unnamed, complete sequence	6318-6347	0	1.0
NZ_CP018621_1	1.1\|6318\|30\|NZ_CP018621\|CRISPRCasFinder	6318-6347	30	NZ_CP009044	Campylobacter iguaniorum strain 1485E plasmid pCIG1485E, complete sequence	8845-8874	8	0.733
NZ_CP018621_1	1.1\|6318\|30\|NZ_CP018621\|CRISPRCasFinder	6318-6347	30	NZ_CP051683	Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence	29238-29267	8	0.733
NZ_CP018621_1	1.1\|6318\|30\|NZ_CP018621\|CRISPRCasFinder	6318-6347	30	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	274367-274396	10	0.667
NZ_CP018621_1	1.1\|6318\|30\|NZ_CP018621\|CRISPRCasFinder	6318-6347	30	NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	21830-21859	10	0.667
NZ_CP018621_1	1.1\|6318\|30\|NZ_CP018621\|CRISPRCasFinder	6318-6347	30	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	544564-544593	10	0.667

1. spacer 1.1|6318|30|NZ_CP018621|CRISPRCasFinder matches to NZ_CP018621 (Paenibacillus xylanexedens strain PAMC 22703 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tagagttgtatatttgtttttgaaagaaac	CRISPR spacer
tagagttgtatatttgtttttgaaagaaac	Protospacer
******************************

2. spacer 1.1|6318|30|NZ_CP018621|CRISPRCasFinder matches to NZ_CP009044 (Campylobacter iguaniorum strain 1485E plasmid pCIG1485E, complete sequence) position: , mismatch: 8, identity: 0.733

tagagttgtatatttgtttttgaaagaaac	CRISPR spacer
gtaccttgtatatttctttttgaaagacat	Protospacer
  .  ********** *********** *.

3. spacer 1.1|6318|30|NZ_CP018621|CRISPRCasFinder matches to NZ_CP051683 (Mucilaginibacter sp. F39-2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tagagttgtatatttgtttttgaaagaaac	CRISPR spacer
accgtttttatatttgtttttgaaagcatc	Protospacer
   . ** ****************** * *

4. spacer 1.1|6318|30|NZ_CP018621|CRISPRCasFinder matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 10, identity: 0.667

tagagttgtatatttgtttttgaaagaaac	CRISPR spacer
aagagttggatatttgtttttgggcaggtt	Protospacer
 ******* *************.. ... .

5. spacer 1.1|6318|30|NZ_CP018621|CRISPRCasFinder matches to NZ_CP044980 (Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence) position: , mismatch: 10, identity: 0.667

tagagttgtatatttgtttttgaaagaaac	CRISPR spacer
aagagttggatatttgtttttgggcaggtt	Protospacer
 ******* *************.. ... .

6. spacer 1.1|6318|30|NZ_CP018621|CRISPRCasFinder matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 10, identity: 0.667

tagagttgtatatttgtttttgaaagaaac	CRISPR spacer
aagagttggatatttgtttttgggcaggtt	Protospacer
 ******* *************.. ... .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018620_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018620_1

2082255-2083379

TypeI

Consensus_repeat	Method
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CRT

16 spacers

cas3,cas5,cas8c,cas7,cas4,cas1,cas2

The CRISPR arrays of NZ_CP018620_1

>merge|NZ_CP018620|1|2082255-2083379|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAATCCCCTTACGCCGCGCTGAATAGCTGTGCGATGTAGTCGCACTCCGTATGGAGTGCGTGGATTGAAATCCGGTAGGTCGAACTCTACCATGTCACCCGGTCTTAGTCGCACTCCGTATGGAGTGCGTGGATTGAAATAACCGGGATGTACTTTGCACGACACGGATCGGGCAGTCGCACTCCGTATGGAGTGCGTGGATTGAAATTGGTGGATCTACCCATGACTCTCAATGACCGCGAGTCGCACTCCGTATGGAGTGCGTGGATTGAAATCGCTCCTGGGGTAAAGGCCACAGCATCGGATCGGGTCGCACTCCGTATGGAGTGCGTGGATTGAAATTTCTGGGACATGTTCCTGTGGACCCAGGGTGTGAAGTCGCACTCCGTATGGAGTGCGTGGATTGAAATAATGATGTAAAGAAACTATCTGTGTCACCGCCGAGTCGCACTCCGTATGGAGTGCGTGGATTGAAATTGCCATGCATTATCCCTCCCCACCCATGTTCCCGAGGTCGCACTCCGTATGGAGTGCGTGGATTGAAATCGATTACCTTCGCGGCTCCTGCGCTTGATGTCGGGTCGCACTCCGTATGGAGTGCGTGGATTGAAATCGCGAACATGTCCCGTGCTTGTGTCAACACTTCCGTCGCACTCCGTATGGAGTGCGTGGATTGAAATATGTGGGTGTATCCTCCCTTAGATGGTTTATTGGTGTCGCACTCCGTATGGAGTGCGTGGATTGAAATCTTACCCTGATCAGCACAGGGCAATCACAATTGGAGGTCGCACTCCGTATGGAGTGCGTGGATTGAAATATTAATAGCTTGACCGATACACTTTCGCGGATTAAGTCGCACTCCGTATGGAGTGCGTGGATTGAAATTAGCATGGGCTTTTATGATTATGTTTAAGGGTGGTACACGTTGCACTCCGTATGGAGTGCGTGGATTGAAATCCGTCCCGGCACTCAGCGATGGCAAACACCTCGTCTCGTCGCACTCCGTATGGAGTGCGTGGATTGAAATAGATTGAAGCACGATAAAATCTGGATTTGTTCCATGTCGCACTCCGTATGGAGTGCGTGGATTGAAATT

>NZ_CP018620|1|1|2082255-2083310|PILER-CR
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CCCCTTACGCCGCGCTGAATAGCTGTGCGATGTA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CCGGTAGGTCGAACTCTACCATGTCACCCGGTCTTA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	AACCGGGATGTACTTTGCACGACACGGATCGGGCA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TGGTGGATCTACCCATGACTCTCAATGACCGCGA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CGCTCCTGGGGTAAAGGCCACAGCATCGGATCGG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TTCTGGGACATGTTCCTGTGGACCCAGGGTGTGAA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	AATGATGTAAAGAAACTATCTGTGTCACCGCCGA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TGCCATGCATTATCCCTCCCCACCCATGTTCCCGAG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CGATTACCTTCGCGGCTCCTGCGCTTGATGTCGG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CGCGAACATGTCCCGTGCTTGTGTCAACACTTCC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	ATGTGGGTGTATCCTCCCTTAGATGGTTTATTGGT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CTTACCCTGATCAGCACAGGGCAATCACAATTGGAG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	ATTAATAGCTTGACCGATACACTTTCGCGGATTAA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TAGCATGGGCTTTTATGATTATGTTTAAGGGTGGTACAC
GTTGCACTCCGTATGGAGTGCGTGGATTGAAAT	CCGTCCCGGCACTCAGCGATGGCAAACACCTCGTCTC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT

>NZ_CP018620|1|1|2082255-2083379|CRISPRCasFinder
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CCCCTTACGCCGCGCTGAATAGCTGTGCGATGTA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CCGGTAGGTCGAACTCTACCATGTCACCCGGTCTTA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	AACCGGGATGTACTTTGCACGACACGGATCGGGCA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TGGTGGATCTACCCATGACTCTCAATGACCGCGA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CGCTCCTGGGGTAAAGGCCACAGCATCGGATCGG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TTCTGGGACATGTTCCTGTGGACCCAGGGTGTGAA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	AATGATGTAAAGAAACTATCTGTGTCACCGCCGA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TGCCATGCATTATCCCTCCCCACCCATGTTCCCGAG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CGATTACCTTCGCGGCTCCTGCGCTTGATGTCGG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CGCGAACATGTCCCGTGCTTGTGTCAACACTTCC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	ATGTGGGTGTATCCTCCCTTAGATGGTTTATTGGT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CTTACCCTGATCAGCACAGGGCAATCACAATTGGAG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	ATTAATAGCTTGACCGATACACTTTCGCGGATTAA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TAGCATGGGCTTTTATGATTATGTTTAAGGGTGGTACAC
GTTGCACTCCGTATGGAGTGCGTGGATTGAAAT	CCGTCCCGGCACTCAGCGATGGCAAACACCTCGTCTC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	AGATTGAAGCACGATAAAATCTGGATTTGTTCCAT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAATT

>NZ_CP018620|1|1|2082255-2083378|CRT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CCCCTTACGCCGCGCTGAATAGCTGTGCGATGTA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CCGGTAGGTCGAACTCTACCATGTCACCCGGTCTTA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	AACCGGGATGTACTTTGCACGACACGGATCGGGCA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TGGTGGATCTACCCATGACTCTCAATGACCGCGA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CGCTCCTGGGGTAAAGGCCACAGCATCGGATCGG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TTCTGGGACATGTTCCTGTGGACCCAGGGTGTGAA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	AATGATGTAAAGAAACTATCTGTGTCACCGCCGA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TGCCATGCATTATCCCTCCCCACCCATGTTCCCGAG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CGATTACCTTCGCGGCTCCTGCGCTTGATGTCGG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CGCGAACATGTCCCGTGCTTGTGTCAACACTTCC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	ATGTGGGTGTATCCTCCCTTAGATGGTTTATTGGT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CTTACCCTGATCAGCACAGGGCAATCACAATTGGAG
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	ATTAATAGCTTGACCGATACACTTTCGCGGATTAA
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	TAGCATGGGCTTTTATGATTATGTTTAAGGGTGGTACAC
GTTGCACTCCGTATGGAGTGCGTGGATTGAAAT	CCGTCCCGGCACTCAGCGATGGCAAACACCTCGTCTC
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	AGATTGAAGCACGATAAAATCTGGATTTGTTCCAT
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018620.1\|WP_074093746.1\|2079067_2081254_-\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP018620.1\|WP_047841829.1\|2076576_2077236_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP018620.1\|WP_074093741.1\|2075003_2075561_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767
NZ_CP018620.1\|WP_074093745.1\|2078565_2078940_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP018620.1\|WP_074093752.1\|2093962_2094622_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP018620.1\|WP_074093751.1\|2093106_2093976_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP018620.1\|WP_074093750.1\|2091177_2093106_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP018620.1\|WP_074093738.1\|2072152_2073658_+\|alpha-glucosidase/alpha-galactosidase	unknown	unknown	gnl\|CDD\|185035
NZ_CP018620.1\|WP_074093739.1\|2073955_2074315_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP018620.1\|WP_074093748.1\|2084801_2085152_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074093753.1\|2094618_2095650_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP018620.1\|WP_074093749.1\|2087924_2090381_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP018620.1\|WP_017690359.1\|2084227_2084437_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226181
NZ_CP018620.1\|WP_074093754.1\|2095659_2095950_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP018620.1\|WP_074093740.1\|2074311_2075007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074093747.1\|2081331_2081910_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP018620.1\|WP_017690356.1\|2086513_2087305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074096759.1\|2090458_2091181_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP018620.1\|WP_074093742.1\|2075693_2076464_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_CP018620.1\|WP_074093743.1\|2077269_2078025_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051

Protein	Function_ID	Function_description	E-value
NZ_CP018620.1\|WP_074093746.1\|2079067_2081254_-\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	2.08432e-133
NZ_CP018620.1\|WP_047841829.1\|2076576_2077236_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.80261e-67
NZ_CP018620.1\|WP_074093741.1\|2075003_2075561_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.78102e-15
NZ_CP018620.1\|WP_074093745.1\|2078565_2078940_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	3.73825e-12
NZ_CP018620.1\|WP_074093752.1\|2093962_2094622_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.0136e-28
NZ_CP018620.1\|WP_074093751.1\|2093106_2093976_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	4.17498e-126
NZ_CP018620.1\|WP_074093750.1\|2091177_2093106_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	5.68783e-173
NZ_CP018620.1\|WP_074093738.1\|2072152_2073658_+\|alpha-glucosidase/alpha-galactosidase	gnl\|CDD\|185035	PRK15076, PRK15076, alpha-galactosidase; Provisional.	0
NZ_CP018620.1\|WP_074093739.1\|2073955_2074315_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.45883e-22
NZ_CP018620.1\|WP_074093749.1\|2087924_2090381_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.54918e-66
NZ_CP018620.1\|WP_074093753.1\|2094618_2095650_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP018620.1\|WP_017690359.1\|2084227_2084437_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	2.27553e-10
NZ_CP018620.1\|WP_074093754.1\|2095659_2095950_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.05466e-30
NZ_CP018620.1\|WP_074093747.1\|2081331_2081910_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.76049e-14
NZ_CP018620.1\|WP_074096759.1\|2090458_2091181_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	7.89204e-97
NZ_CP018620.1\|WP_074093742.1\|2075693_2076464_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.09563e-113
NZ_CP018620.1\|WP_074093743.1\|2077269_2078025_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.00124e-137

>NZ_CP018620.1|WP_074093747.1|2081331_2081910_-|TetR/AcrR-family-transcriptional-regulator
MKTIDRRQQVMDSAEKSFALFGYKATTMEQVARLANVGKGTIYTFFDNKEELFSEILRSIIADMRQITERTVKEENSFLDNVHMSMDSLLEYREEHELLIKLFQEVNEFGTPQAKEGLQKVETAILEYLERQVSRAMELEQIRRDDPKLVSFVLLKLYVTLTSDWNKTHPTLHKDQIKDFVALFLKSGLSPI
>NZ_CP018620.1|WP_074093746.1|2079067_2081254_-|YhgE/Pip-domain-containing-protein
MKSFHVFGQDLKSAFKKPKVFIPILVVLFIPVLYSGLFLNAFWDPYGKMNELPVAVVNTDQGATYNDKSLEVGQNLVDELKKSNDFDWQFVTREQAEQGMEDDKYYMTIVIPEDFSTKATTLMDEHPEPADLIYEPNEGYNFLAGQIGGTAVKQIRSKVAAKVTESYTETLLDQVEKISSGLSDAGDGAGKINEGAAKLDNGAATLKKNLSKLADGTDKLETGVAPLKEGTATLAQGIGTLHAGANSLSDGLSQLAAAGTKLGNGALQAEAGGKQLQAGIQSAQEGAAKLDAGLAASEQGSAKLAAGLQTSVEGSSKVSEGAKAVAQGLAQLAEASPELAASPAVQQLLAASQAVATGSEQVYQGGQQLVAGSQNLHAAQQQLHQGSSQLVQGEQQLVQGATQLSAGQEKLATGLQQFNSKLSEATAGGTKLADGSGQLNAGAGKLVAGVSQLTDGISTLADGSHKLDEGAGQLKEGTLKLTDGSGELATKLNEAAEQTGSVKKTDELVTMYAEPVQVDEHKYNEVPNYGTGFSPYFLSLGLFVGALIATLVVPTRGSTVSEASGWNRFVSKTLSFTLMSAVQSLLASWLVLSVLGLDVQSVPLFLLFSFVTSLSFMYIIQALVTWLENPGRFLAILMLIFQLTTSAGTFPLELIPNWLKVFNPWLPMTYSVTGYKAVISSGQFGVTWDQIGILCIFAVMGLGGTLTYFLMHHTTENANVSSEVALHL
>NZ_CP018620.1|WP_074093745.1|2078565_2078940_+|DUF4190-domain-containing-protein
MNILNKQGGFTLEHRENDVDRYYNDTLPPPPYVIPKTNSKSIAALVLGILSIVIPYVGLLIGIVAIIIASISLKEIKNRMEQGRGLAIAGLVCGIIGTAIYVLLILLVLLFNFAISSSEIYSTY
>NZ_CP018620.1|WP_074093743.1|2077269_2078025_+|amino-acid-ABC-transporter-ATP-binding-protein
MTHIIEVNQLRKSFGTLDVLKQVSFNVEPGEVIAVIGPSGSGKSTMLRSLIHLEDISGGTIRIQDQTLVDNGRYAGAADIRKMTDRMGMVFQHFNLFPHLTVQDNLELAPKTLKKESSSVIRYRSLELLGKVGLSDKADVYPANLSGGQKQRVAIARALMMQPDILLFDEPTSALDPELTGEVLRVIKQLAQENMTMMIVTHEMGFARDVADRVFFMDNGEIAEAGPPEQIFGNPRLARTRTFLQRVEVEG
>NZ_CP018620.1|WP_047841829.1|2076576_2077236_+|amino-acid-ABC-transporter-permease
MSWDYLSTILKPMLEGAQTTIFMFLLAIVLSVPLGFAVTLAMRSQIKLLAWIAHTYVYVMRGTPLLLQILFFCFGLPLLPVIGEYLVFDRFVAAGIAFILNYAAYFAEIFRGGLLSIDKGQHEAAKVLGLTKWQTMTKVIIPQMIRVVLPATANESITLIKDTALLYAVAVPELLYYAQAAVNRDLQLTPFFVAAVMYLLMTLVLTVLFKALEKRFSFE
>NZ_CP018620.1|WP_074093742.1|2075693_2076464_+|amino-acid-ABC-transporter-substrate-binding-protein
MRKKAILLLFISICVLIVAGCSSSASKDDNTIVVGIDDKFAPMGFRDEQNEIVGFDIDYARAAAEKMGKEITFQPIDWSSKESELNSGRIDMIWNGYTITDERKEKVLFTKPYLENSQVAITLADSPITKLDELDGKNVGLQALSSAADALAASPLKDKVKASEFKDNVLALTDLKTKRLDAVIIDEVVARYYMSKEEGTFKLMDESLAPEQYGIGIKKGNEELLNQLQKALDELNVDGTAAKISTQWLGEDKVLK
>NZ_CP018620.1|WP_074093741.1|2075003_2075561_+|DUF4825-domain-containing-protein
MRIRNIWIITLVVLGIIGLVIVEGFVNPKIEAKQAQYEEEQQNPLTHDFAALAKYRSPYMGDHSNLSHLNQALPLRERLNGYQLYPETFTVQVNYSLDTREMDAEELERILVYNAVANFVMIDNLEQIVYQFENTSHTLRRESAQQWTGTELKELQNPELWNSNVREKLVEPAQVKEAVSQIVDN
>NZ_CP018620.1|WP_074093740.1|2074311_2075007_+|hypothetical-protein
MRLETRITRHVNRLFAHAQDTLDNRELKEEIHSNLAARIDDYISQGMSEEKAFQTAIQHIAGMDEVMSDHRRVQRVPYWTALLQSALIYSLIAWIITIPMRVLMQGSAINNLLMIVSLIVGGMYVLYLLINKSNDSATSVKTTVIRIPVLVQWKRRIWWLWAALILVLWGTQAALRFGSNIWFNRPIQVDGPYQFAVIVIAFAIPLLSVIIPLVVHRAYRIVSKYEVSDVL
>NZ_CP018620.1|WP_074093739.1|2073955_2074315_+|PadR-family-transcriptional-regulator
MDVQVINSDLIRGNIDPIILSVLIPADNYGYSIIKEIYSKSGEQFELKEPTLYSSLKRLEKSGYVASYWGEETQGGRRKYYRITGQGLEAYREQVQAWQAAKALIDCMIVTGEKGDEDR
>NZ_CP018620.1|WP_074093738.1|2072152_2073658_+|alpha-glucosidase/alpha-galactosidase
MSFKVAFIGAGSIGFTRGLLRDLLTVPEFNNIEIAFCDINQHNLDMVTELCQRDIRENGLNIQIQPTTDRKEALKDAKYVLCTIRVGGLEAFATDVDIPLKYGVDQCVGDTLCAGGIMYGQRGIAEMLDICKDIREQSAPDVLLLNYSNPMAMLTWACNKYGGVRTIGLCHGVQHGHHQIAEAFGLKKSEVDIVCAGINHQTWYIQASHEGKDLTGDLLEAFEKHPEYSRTEKVRIDMLRRFGYYSTESNGHLSEYVPWYRKRPEEINEWIDLGNWINGETGGYLRVCTEGRNWFETDFPNWMKDEPMQFIPEKRGEEHGSYIIEGLETGRVYRGHFNTVNNGVISNLPDDAIIEAPGYVDRNGISMPHVGDLPLGPAAVCNVSIAVQRLAVEAAVNGDDKLLRQAFMMDPLVGAVCNPKEIWQMVDEMLVAQAQWLPQYGDAIAAAEARLAAGDLIPTKEYEGAARLKVKTVEEMKQDRDAANKNAGESDKGKDREKVQQ
>NZ_CP018620.1|WP_017690359.1|2084227_2084437_-|helix-turn-helix-domain-containing-protein
MALKPSYKPMEITLIKKDKNKTYLRTQLGISPSTLAKMSNGEFVALSVIARICEDLQCRIEEVVEFIEE
>NZ_CP018620.1|WP_074093748.1|2084801_2085152_+|hypothetical-protein
MSDRIELASVVIGPFDDVQDFYIYQGYVMNESYIFFLDEGTLWLRHVHKVAHVDHLYINGDTGGIILAEHPQGNVKELIESIVDRLCGMDALTFLTDVLLWTPERVDMNLKLDRFH
>NZ_CP018620.1|WP_017690356.1|2086513_2087305_+|hypothetical-protein
MSRYYDGYGLDSTVTLLRIAYGLDNWREVVKLGETLYEESLRIYNLQMLTKEQDIVEIHTQRAIVYYIGYSRLMQGIAYQKLLEFDKARECVLQYSDFQWIKLTNQETLNEIEFYSDIAKINLMVLDLLEGNATKLDEYVAYIQKSKGEIMSGILTLLEANRLNNLPIQEFEYLFEKHRLISDTTIMTDIDVSYYLKFSFELAMYYSRNGNDSDAIDILLNCLAISPKINQNKIKYVAFFEKIREQATHAQINTYKSILEGML
>NZ_CP018620.1|WP_074093749.1|2087924_2090381_+|CRISPR-associated-helicase/endonuclease-Cas3
MTYIAHICQKDGRIQTVQDHLVEVKQGAEQAGEKIGVKYLAGIAGLLHDMGKNTDLFRNYIQEAVANPDAPPRKGSVDHSTAGGKLLHSLYHGSGTTLESKYTAEWIANCIISHHQGLRDYISPDKTSPYMERVISRQIDQYEQAKEEFFKHNLPGQLDHMFKQATQELQGYIQIIKEHKLPPIAGALLIKYMFSCLIDADRTNTRRFEENETLAEEIDYKSFFLQSYELLSQHLSKLEHSSIVDTPINRLRREMSRQCEQFAYRPSGVYTLSIPTGGGKTLASMRYALRHAIEHNKQRIIYIVPYTTIIEQNAAEIRNILKNDDMILEHHSNVVDDKDDERHEGDEGETLDLRKKNLKLARDHWDRPIIFTTMVQFLNTFYAKGTRNVRRLHQLSNAVIVFDEVQSVPVHCISLFNAALNFLHVIGRSSLLLCTATQPALDFVKHKLHFSKQPEIIQNLDEVGRSFKRVDLQDLTRESLSGWGAEEVSSFVQEQMREVDSVLVILNTKTAVRKLFEQLNEVEWLRESGIQVVHLSTNMCAAHRKEVLSGEYGVIPRLAKGERIICVSTQLIEAGVNISFDCVVRSLAGLDSIAQAAGRCNRHGKDKVRNVYIIRSSDEVLTNLPEIQIGAEKTERVLQEFEDDPGSLGDDLLSPKAMSRYFEYYFNDIGDKMHYPIPKLEQNLFDLMDRNRYYVDAYKKKHDCRPEAVNHYAIATAEKYFEAISTNATPVIVPYGEEGKELILDLNGAIEPGEMSQLLRKAQQYTVNIYDHELRALEKNGDVRPLLHGHVLALREPAYSDDFGVESKGEGAWEPMMI
>NZ_CP018620.1|WP_074096759.1|2090458_2091181_+|type-I-C-CRISPR-associated-protein-Cas5
MRNQIEFEVSGKYALFTDPLTKLGGEKFSYQIPTYQALKGIVESIYWKPTLTWIVDEVRIMNPIQTESKGMRPIEYSGGNTLAYYTYLRDVRYQVKAHFIFNPHREDLVHDQNEHKHHNIAKRAVQVGGRRDIFLGTRECQGYVEPCQFGEDDSFYDRIGELDFGTMLHGISYPDETGSNEREVRLWKAKMQHGVIQFIRPDECTLVRKVGEGTAKIFDAGNMQSVDDLHSEWFGNEVSE
>NZ_CP018620.1|WP_074093750.1|2091177_2093106_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLANLSRTYDDHAKVVGQFEMKKNGKEYALIPISHTTQTAHIEVHLNGKGDIVNAKVVEKNDGSTIIPCTEASASRTSAPVPYPLFDKLSYVAGDYTQFCGEVKGTPYQDYLNQLKAWCESPFSHPRVQSVLHYVSKGTLIADLVNRGILYVDSQGKLLEKWIAGPGDQEGKKPDIFNVIAADQSGAFVRFAVDIPGEPESRLWRDASVQQSFIHFYEMSLQDKDICFVTGDYLPVADKHASRIRHSGDKSKLISANDSSGFTYRGRFRTSRDAAVVSYEASQKGHNALKWLIDRQGTTIDGKVFLVWGSTSLDMPEPQEDAFSLWDEDDEEAFAGGDTTHKEFALQIRKAIGGYRYDGEYNSKHEVTLMTLDAATPGRMSIMYYRSLDQNEYLDRILAWHESCYWLHRYRKNKNDKPVSFVGAPATKDIAFAAYGPRASDKVVKGLMERMLPCIIDERPIPLDIVRSSIQRASNPVGMENWEWEKTLSITCALVNKKEGYGVSLNTETTDRSYVFGRMLAIADVLERSALGKEEKRATNAIRYMNAFAQRPGRTWSIIQSNLQPYQARMGTGARYYNSLLDEVGDKLQLEDFTDKPLTGLYLLGFYSQRNDLYTSRKDKEAAATFDKDDENQLNEQGDN
>NZ_CP018620.1|WP_074093751.1|2093106_2093976_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTLDHKIDFAVVLSVRNANPNGDPLNGNRPRQNYDGLGEISDVCIKRKIRNRLQDMGESILVQSDEKRNDAHRSIKDRVDANENVQEHAKGKKANKDLYAEAACQSWIDVRSFGQVFAFSGTDVSVGIRGPVSIHTAVSLDRIDISSMQITKSVNSVTTAKDPDKKGSDTMGMKHRVDFGVYVFYGSINTQLAEKTGFTYEDAEKIRESLRTLFENDTSSARPDGSMEVHQLYWWEHSSKMGQYSSAKVHRSLQIELKPGVAEAKSYDDYNYTVVPLEGLAVQEYEGL
>NZ_CP018620.1|WP_074093752.1|2093962_2094622_+|CRISPR-associated-protein-Cas4
MKDYNEEDYLLLSGIQHFNFCRRQWALIHIEQQWEDNVRTIEGDHLHRKADQPALREKRGDKLVVRALPVQSRELGITGICDVVEFIRDPSGVSLAGEEGLYLPFPVEYKRGKPKRNDSDHSQLVAQVMCLEEMLVCDIPKAYFYYDEIKHRIEVIITAADRERVKASIQEMRHYFERNHTPKAKAGPHCLSCSLNNICVPDILNKRSVSSYIESRLNE
>NZ_CP018620.1|WP_074093753.1|2094618_2095650_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTLPDTYLGLDGENIVVKQEEEILARYPLHNLEAVCTFGYAGVSPALMGACASRNVSLTFMTRTGRFLARVIGEDRGNVVLRKEQYRISDDEVRSARVARNMITGKLYNNKWILERATRDYALRIDTERIKKVTESLGETMKLLREVEQLDILRGLEGSAAVQYNSVFDDLILQQKESFYFYGRSRRPPLDKVNALLSFAYTLLANDMKSALESVGLDAYVGFLHRDRPGRASLALDMMEELRGVYADRFVLSLINKKVVNDKGFYVKENLAVIMDDETRKKVLKAWQERKQEKIMHPYLNEKIPWGLVPYTQALLLARYIRGDLDEYPPFLWK
>NZ_CP018620.1|WP_074093754.1|2095659_2095950_+|CRISPR-associated-endonuclease-Cas2
MLILITYDVSTIDSEGRRRLSKVAKKCVDHGQRVQNSVFECILDAAQFRRLRFELEELIDKDTDSLRFYNLGDNYKRKVQHVGAKDSYDMGDPLIL

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Crispr_ID: NZ_CP018620_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018620_2

2083536-2083703

TypeI

Consensus_repeat	Method
GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT	CRISPRCasFinder

2 spacers

cas3,cas5,cas8c,cas7,cas4,cas1,cas2

The CRISPR arrays of NZ_CP018620_2

>merge|NZ_CP018620|2|2083536-2083703|CRISPRCasFinder
GTCGCACTCTGTATGGAGTACGCGGATTGAAATCCTAAAAAGATTGATTTGGGTGGCCTGATTGGTAGTCGCACTCCGTATGGCGCGCATGGATTGAGTTACTCTTAATGATTTCAGGAAGTGGTTCGGGGAAGTGTCACACTTTATATGGATTGCGTTGCTGGAATC

>NZ_CP018620|2|2|2083536-2083703|CRISPRCasFinder
GTCGCACTCTGTATGGAGTACGCGGATTGAAAT	CCTAAAAAGATTGATTTGGGTGGCCTGATTGGTA
GTCGCACTCCGTATGGCGCGCATGGATTGAGTT	ACTCTTAATGATTTCAGGAAGTGGTTCGGGGAAGT
GTCACACTTTATATGGATTGCGTTGCTGGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018620.1\|WP_074093746.1\|2079067_2081254_-\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP018620.1\|WP_047841829.1\|2076576_2077236_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP018620.1\|WP_074093741.1\|2075003_2075561_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767
NZ_CP018620.1\|WP_074093745.1\|2078565_2078940_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP018620.1\|WP_074093752.1\|2093962_2094622_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP018620.1\|WP_074093751.1\|2093106_2093976_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP018620.1\|WP_074093750.1\|2091177_2093106_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP018620.1\|WP_074093738.1\|2072152_2073658_+\|alpha-glucosidase/alpha-galactosidase	unknown	unknown	gnl\|CDD\|185035
NZ_CP018620.1\|WP_074093739.1\|2073955_2074315_+\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP018620.1\|WP_074093748.1\|2084801_2085152_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074093753.1\|2094618_2095650_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP018620.1\|WP_074093749.1\|2087924_2090381_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP018620.1\|WP_017690359.1\|2084227_2084437_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226181
NZ_CP018620.1\|WP_074093754.1\|2095659_2095950_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP018620.1\|WP_074093740.1\|2074311_2075007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074093747.1\|2081331_2081910_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP018620.1\|WP_017690356.1\|2086513_2087305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074096759.1\|2090458_2091181_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP018620.1\|WP_074093742.1\|2075693_2076464_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_CP018620.1\|WP_074093743.1\|2077269_2078025_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051

Protein	Function_ID	Function_description	E-value
NZ_CP018620.1\|WP_074093746.1\|2079067_2081254_-\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	2.08432e-133
NZ_CP018620.1\|WP_047841829.1\|2076576_2077236_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.80261e-67
NZ_CP018620.1\|WP_074093741.1\|2075003_2075561_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.78102e-15
NZ_CP018620.1\|WP_074093745.1\|2078565_2078940_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	3.73825e-12
NZ_CP018620.1\|WP_074093752.1\|2093962_2094622_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.0136e-28
NZ_CP018620.1\|WP_074093751.1\|2093106_2093976_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	4.17498e-126
NZ_CP018620.1\|WP_074093750.1\|2091177_2093106_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	5.68783e-173
NZ_CP018620.1\|WP_074093738.1\|2072152_2073658_+\|alpha-glucosidase/alpha-galactosidase	gnl\|CDD\|185035	PRK15076, PRK15076, alpha-galactosidase; Provisional.	0
NZ_CP018620.1\|WP_074093739.1\|2073955_2074315_+\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.45883e-22
NZ_CP018620.1\|WP_074093749.1\|2087924_2090381_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.54918e-66
NZ_CP018620.1\|WP_074093753.1\|2094618_2095650_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP018620.1\|WP_017690359.1\|2084227_2084437_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	2.27553e-10
NZ_CP018620.1\|WP_074093754.1\|2095659_2095950_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.05466e-30
NZ_CP018620.1\|WP_074093747.1\|2081331_2081910_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.76049e-14
NZ_CP018620.1\|WP_074096759.1\|2090458_2091181_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	7.89204e-97
NZ_CP018620.1\|WP_074093742.1\|2075693_2076464_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.09563e-113
NZ_CP018620.1\|WP_074093743.1\|2077269_2078025_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.00124e-137

>NZ_CP018620.1|WP_074093747.1|2081331_2081910_-|TetR/AcrR-family-transcriptional-regulator
MKTIDRRQQVMDSAEKSFALFGYKATTMEQVARLANVGKGTIYTFFDNKEELFSEILRSIIADMRQITERTVKEENSFLDNVHMSMDSLLEYREEHELLIKLFQEVNEFGTPQAKEGLQKVETAILEYLERQVSRAMELEQIRRDDPKLVSFVLLKLYVTLTSDWNKTHPTLHKDQIKDFVALFLKSGLSPI
>NZ_CP018620.1|WP_074093746.1|2079067_2081254_-|YhgE/Pip-domain-containing-protein
MKSFHVFGQDLKSAFKKPKVFIPILVVLFIPVLYSGLFLNAFWDPYGKMNELPVAVVNTDQGATYNDKSLEVGQNLVDELKKSNDFDWQFVTREQAEQGMEDDKYYMTIVIPEDFSTKATTLMDEHPEPADLIYEPNEGYNFLAGQIGGTAVKQIRSKVAAKVTESYTETLLDQVEKISSGLSDAGDGAGKINEGAAKLDNGAATLKKNLSKLADGTDKLETGVAPLKEGTATLAQGIGTLHAGANSLSDGLSQLAAAGTKLGNGALQAEAGGKQLQAGIQSAQEGAAKLDAGLAASEQGSAKLAAGLQTSVEGSSKVSEGAKAVAQGLAQLAEASPELAASPAVQQLLAASQAVATGSEQVYQGGQQLVAGSQNLHAAQQQLHQGSSQLVQGEQQLVQGATQLSAGQEKLATGLQQFNSKLSEATAGGTKLADGSGQLNAGAGKLVAGVSQLTDGISTLADGSHKLDEGAGQLKEGTLKLTDGSGELATKLNEAAEQTGSVKKTDELVTMYAEPVQVDEHKYNEVPNYGTGFSPYFLSLGLFVGALIATLVVPTRGSTVSEASGWNRFVSKTLSFTLMSAVQSLLASWLVLSVLGLDVQSVPLFLLFSFVTSLSFMYIIQALVTWLENPGRFLAILMLIFQLTTSAGTFPLELIPNWLKVFNPWLPMTYSVTGYKAVISSGQFGVTWDQIGILCIFAVMGLGGTLTYFLMHHTTENANVSSEVALHL
>NZ_CP018620.1|WP_074093745.1|2078565_2078940_+|DUF4190-domain-containing-protein
MNILNKQGGFTLEHRENDVDRYYNDTLPPPPYVIPKTNSKSIAALVLGILSIVIPYVGLLIGIVAIIIASISLKEIKNRMEQGRGLAIAGLVCGIIGTAIYVLLILLVLLFNFAISSSEIYSTY
>NZ_CP018620.1|WP_074093743.1|2077269_2078025_+|amino-acid-ABC-transporter-ATP-binding-protein
MTHIIEVNQLRKSFGTLDVLKQVSFNVEPGEVIAVIGPSGSGKSTMLRSLIHLEDISGGTIRIQDQTLVDNGRYAGAADIRKMTDRMGMVFQHFNLFPHLTVQDNLELAPKTLKKESSSVIRYRSLELLGKVGLSDKADVYPANLSGGQKQRVAIARALMMQPDILLFDEPTSALDPELTGEVLRVIKQLAQENMTMMIVTHEMGFARDVADRVFFMDNGEIAEAGPPEQIFGNPRLARTRTFLQRVEVEG
>NZ_CP018620.1|WP_047841829.1|2076576_2077236_+|amino-acid-ABC-transporter-permease
MSWDYLSTILKPMLEGAQTTIFMFLLAIVLSVPLGFAVTLAMRSQIKLLAWIAHTYVYVMRGTPLLLQILFFCFGLPLLPVIGEYLVFDRFVAAGIAFILNYAAYFAEIFRGGLLSIDKGQHEAAKVLGLTKWQTMTKVIIPQMIRVVLPATANESITLIKDTALLYAVAVPELLYYAQAAVNRDLQLTPFFVAAVMYLLMTLVLTVLFKALEKRFSFE
>NZ_CP018620.1|WP_074093742.1|2075693_2076464_+|amino-acid-ABC-transporter-substrate-binding-protein
MRKKAILLLFISICVLIVAGCSSSASKDDNTIVVGIDDKFAPMGFRDEQNEIVGFDIDYARAAAEKMGKEITFQPIDWSSKESELNSGRIDMIWNGYTITDERKEKVLFTKPYLENSQVAITLADSPITKLDELDGKNVGLQALSSAADALAASPLKDKVKASEFKDNVLALTDLKTKRLDAVIIDEVVARYYMSKEEGTFKLMDESLAPEQYGIGIKKGNEELLNQLQKALDELNVDGTAAKISTQWLGEDKVLK
>NZ_CP018620.1|WP_074093741.1|2075003_2075561_+|DUF4825-domain-containing-protein
MRIRNIWIITLVVLGIIGLVIVEGFVNPKIEAKQAQYEEEQQNPLTHDFAALAKYRSPYMGDHSNLSHLNQALPLRERLNGYQLYPETFTVQVNYSLDTREMDAEELERILVYNAVANFVMIDNLEQIVYQFENTSHTLRRESAQQWTGTELKELQNPELWNSNVREKLVEPAQVKEAVSQIVDN
>NZ_CP018620.1|WP_074093740.1|2074311_2075007_+|hypothetical-protein
MRLETRITRHVNRLFAHAQDTLDNRELKEEIHSNLAARIDDYISQGMSEEKAFQTAIQHIAGMDEVMSDHRRVQRVPYWTALLQSALIYSLIAWIITIPMRVLMQGSAINNLLMIVSLIVGGMYVLYLLINKSNDSATSVKTTVIRIPVLVQWKRRIWWLWAALILVLWGTQAALRFGSNIWFNRPIQVDGPYQFAVIVIAFAIPLLSVIIPLVVHRAYRIVSKYEVSDVL
>NZ_CP018620.1|WP_074093739.1|2073955_2074315_+|PadR-family-transcriptional-regulator
MDVQVINSDLIRGNIDPIILSVLIPADNYGYSIIKEIYSKSGEQFELKEPTLYSSLKRLEKSGYVASYWGEETQGGRRKYYRITGQGLEAYREQVQAWQAAKALIDCMIVTGEKGDEDR
>NZ_CP018620.1|WP_074093738.1|2072152_2073658_+|alpha-glucosidase/alpha-galactosidase
MSFKVAFIGAGSIGFTRGLLRDLLTVPEFNNIEIAFCDINQHNLDMVTELCQRDIRENGLNIQIQPTTDRKEALKDAKYVLCTIRVGGLEAFATDVDIPLKYGVDQCVGDTLCAGGIMYGQRGIAEMLDICKDIREQSAPDVLLLNYSNPMAMLTWACNKYGGVRTIGLCHGVQHGHHQIAEAFGLKKSEVDIVCAGINHQTWYIQASHEGKDLTGDLLEAFEKHPEYSRTEKVRIDMLRRFGYYSTESNGHLSEYVPWYRKRPEEINEWIDLGNWINGETGGYLRVCTEGRNWFETDFPNWMKDEPMQFIPEKRGEEHGSYIIEGLETGRVYRGHFNTVNNGVISNLPDDAIIEAPGYVDRNGISMPHVGDLPLGPAAVCNVSIAVQRLAVEAAVNGDDKLLRQAFMMDPLVGAVCNPKEIWQMVDEMLVAQAQWLPQYGDAIAAAEARLAAGDLIPTKEYEGAARLKVKTVEEMKQDRDAANKNAGESDKGKDREKVQQ
>NZ_CP018620.1|WP_017690359.1|2084227_2084437_-|helix-turn-helix-domain-containing-protein
MALKPSYKPMEITLIKKDKNKTYLRTQLGISPSTLAKMSNGEFVALSVIARICEDLQCRIEEVVEFIEE
>NZ_CP018620.1|WP_074093748.1|2084801_2085152_+|hypothetical-protein
MSDRIELASVVIGPFDDVQDFYIYQGYVMNESYIFFLDEGTLWLRHVHKVAHVDHLYINGDTGGIILAEHPQGNVKELIESIVDRLCGMDALTFLTDVLLWTPERVDMNLKLDRFH
>NZ_CP018620.1|WP_017690356.1|2086513_2087305_+|hypothetical-protein
MSRYYDGYGLDSTVTLLRIAYGLDNWREVVKLGETLYEESLRIYNLQMLTKEQDIVEIHTQRAIVYYIGYSRLMQGIAYQKLLEFDKARECVLQYSDFQWIKLTNQETLNEIEFYSDIAKINLMVLDLLEGNATKLDEYVAYIQKSKGEIMSGILTLLEANRLNNLPIQEFEYLFEKHRLISDTTIMTDIDVSYYLKFSFELAMYYSRNGNDSDAIDILLNCLAISPKINQNKIKYVAFFEKIREQATHAQINTYKSILEGML
>NZ_CP018620.1|WP_074093749.1|2087924_2090381_+|CRISPR-associated-helicase/endonuclease-Cas3
MTYIAHICQKDGRIQTVQDHLVEVKQGAEQAGEKIGVKYLAGIAGLLHDMGKNTDLFRNYIQEAVANPDAPPRKGSVDHSTAGGKLLHSLYHGSGTTLESKYTAEWIANCIISHHQGLRDYISPDKTSPYMERVISRQIDQYEQAKEEFFKHNLPGQLDHMFKQATQELQGYIQIIKEHKLPPIAGALLIKYMFSCLIDADRTNTRRFEENETLAEEIDYKSFFLQSYELLSQHLSKLEHSSIVDTPINRLRREMSRQCEQFAYRPSGVYTLSIPTGGGKTLASMRYALRHAIEHNKQRIIYIVPYTTIIEQNAAEIRNILKNDDMILEHHSNVVDDKDDERHEGDEGETLDLRKKNLKLARDHWDRPIIFTTMVQFLNTFYAKGTRNVRRLHQLSNAVIVFDEVQSVPVHCISLFNAALNFLHVIGRSSLLLCTATQPALDFVKHKLHFSKQPEIIQNLDEVGRSFKRVDLQDLTRESLSGWGAEEVSSFVQEQMREVDSVLVILNTKTAVRKLFEQLNEVEWLRESGIQVVHLSTNMCAAHRKEVLSGEYGVIPRLAKGERIICVSTQLIEAGVNISFDCVVRSLAGLDSIAQAAGRCNRHGKDKVRNVYIIRSSDEVLTNLPEIQIGAEKTERVLQEFEDDPGSLGDDLLSPKAMSRYFEYYFNDIGDKMHYPIPKLEQNLFDLMDRNRYYVDAYKKKHDCRPEAVNHYAIATAEKYFEAISTNATPVIVPYGEEGKELILDLNGAIEPGEMSQLLRKAQQYTVNIYDHELRALEKNGDVRPLLHGHVLALREPAYSDDFGVESKGEGAWEPMMI
>NZ_CP018620.1|WP_074096759.1|2090458_2091181_+|type-I-C-CRISPR-associated-protein-Cas5
MRNQIEFEVSGKYALFTDPLTKLGGEKFSYQIPTYQALKGIVESIYWKPTLTWIVDEVRIMNPIQTESKGMRPIEYSGGNTLAYYTYLRDVRYQVKAHFIFNPHREDLVHDQNEHKHHNIAKRAVQVGGRRDIFLGTRECQGYVEPCQFGEDDSFYDRIGELDFGTMLHGISYPDETGSNEREVRLWKAKMQHGVIQFIRPDECTLVRKVGEGTAKIFDAGNMQSVDDLHSEWFGNEVSE
>NZ_CP018620.1|WP_074093750.1|2091177_2093106_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLANLSRTYDDHAKVVGQFEMKKNGKEYALIPISHTTQTAHIEVHLNGKGDIVNAKVVEKNDGSTIIPCTEASASRTSAPVPYPLFDKLSYVAGDYTQFCGEVKGTPYQDYLNQLKAWCESPFSHPRVQSVLHYVSKGTLIADLVNRGILYVDSQGKLLEKWIAGPGDQEGKKPDIFNVIAADQSGAFVRFAVDIPGEPESRLWRDASVQQSFIHFYEMSLQDKDICFVTGDYLPVADKHASRIRHSGDKSKLISANDSSGFTYRGRFRTSRDAAVVSYEASQKGHNALKWLIDRQGTTIDGKVFLVWGSTSLDMPEPQEDAFSLWDEDDEEAFAGGDTTHKEFALQIRKAIGGYRYDGEYNSKHEVTLMTLDAATPGRMSIMYYRSLDQNEYLDRILAWHESCYWLHRYRKNKNDKPVSFVGAPATKDIAFAAYGPRASDKVVKGLMERMLPCIIDERPIPLDIVRSSIQRASNPVGMENWEWEKTLSITCALVNKKEGYGVSLNTETTDRSYVFGRMLAIADVLERSALGKEEKRATNAIRYMNAFAQRPGRTWSIIQSNLQPYQARMGTGARYYNSLLDEVGDKLQLEDFTDKPLTGLYLLGFYSQRNDLYTSRKDKEAAATFDKDDENQLNEQGDN
>NZ_CP018620.1|WP_074093751.1|2093106_2093976_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTLDHKIDFAVVLSVRNANPNGDPLNGNRPRQNYDGLGEISDVCIKRKIRNRLQDMGESILVQSDEKRNDAHRSIKDRVDANENVQEHAKGKKANKDLYAEAACQSWIDVRSFGQVFAFSGTDVSVGIRGPVSIHTAVSLDRIDISSMQITKSVNSVTTAKDPDKKGSDTMGMKHRVDFGVYVFYGSINTQLAEKTGFTYEDAEKIRESLRTLFENDTSSARPDGSMEVHQLYWWEHSSKMGQYSSAKVHRSLQIELKPGVAEAKSYDDYNYTVVPLEGLAVQEYEGL
>NZ_CP018620.1|WP_074093752.1|2093962_2094622_+|CRISPR-associated-protein-Cas4
MKDYNEEDYLLLSGIQHFNFCRRQWALIHIEQQWEDNVRTIEGDHLHRKADQPALREKRGDKLVVRALPVQSRELGITGICDVVEFIRDPSGVSLAGEEGLYLPFPVEYKRGKPKRNDSDHSQLVAQVMCLEEMLVCDIPKAYFYYDEIKHRIEVIITAADRERVKASIQEMRHYFERNHTPKAKAGPHCLSCSLNNICVPDILNKRSVSSYIESRLNE
>NZ_CP018620.1|WP_074093753.1|2094618_2095650_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTLPDTYLGLDGENIVVKQEEEILARYPLHNLEAVCTFGYAGVSPALMGACASRNVSLTFMTRTGRFLARVIGEDRGNVVLRKEQYRISDDEVRSARVARNMITGKLYNNKWILERATRDYALRIDTERIKKVTESLGETMKLLREVEQLDILRGLEGSAAVQYNSVFDDLILQQKESFYFYGRSRRPPLDKVNALLSFAYTLLANDMKSALESVGLDAYVGFLHRDRPGRASLALDMMEELRGVYADRFVLSLINKKVVNDKGFYVKENLAVIMDDETRKKVLKAWQERKQEKIMHPYLNEKIPWGLVPYTQALLLARYIRGDLDEYPPFLWK
>NZ_CP018620.1|WP_074093754.1|2095659_2095950_+|CRISPR-associated-endonuclease-Cas2
MLILITYDVSTIDSEGRRRLSKVAKKCVDHGQRVQNSVFECILDAAQFRRLRFELEELIDKDTDSLRFYNLGDNYKRKVQHVGAKDSYDMGDPLIL

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Crispr_ID: NZ_CP018620_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018620_3

2085475-2086297

TypeI

I-C:NA

Consensus_repeat	Method
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTATATGAGTGCGTGGATTGAAATNN	CRT
GTCGCACTCTATAT-GAGTGCGTGGATTGAAAT	PILER-CR

12 spacers

cas3,cas5,cas8c,cas7,cas4,cas1,cas2

The CRISPR arrays of NZ_CP018620_3

>merge|NZ_CP018620|3|2085475-2086297|CRISPRCasFinder,CRT,PILER-CR
GTCGCACTCTATATGAGTGCGTGGATTGAAATTGAATTGTCTCGACATACGTCCATGGCCTATGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCCTATCCGAACGTGTGTAGGGGTTTTGTTATCGGTCGCACTCTATATGAGTGCGTGGATTGAAATTCAGCTTCAGCTTGGATTCTCTTGGCATCAAGCATGTCGCACTCTATATGAGTGCGTGGATTGAAATAGGAATACCGTAAATTGCTCCGCGATTCTATTTGCGTCGCACTCTATATGAGTGCGTGGATTGAAATGAAACTCGCCAACGTAAGTTGATTGCGAAAGATGTCGCACTCTATATGAGTGCGTGGATTGAAATTTCTCGCTCACTGGCGGTTTGTATGTGACCACATCGCACTCTATATGAGTGCGTGGATTGAAATCAGCTTAGTGGTTTCGCGCTGGAGGTTCTGGAGAAGTCGCACTCTATATGAGTGCGTGGATTGAAATAAACCGCAGGCGATATTGCCTGACATTGATTTCAGTCGCACTCTATATGAGTGCGTGGATTGAAATGCTGTAGTACTCACGAGTCTTCTGAGCACCTGTTAGTCGCACTCTATATGAGTGCGTGGATTGAAATAAAAAGGCAACGTATGCAGCCGATCCCACTGGTAAGTCGCACTCTATATGAGTGCGTGGATTGAAATAATCCAAGCGCTTTTATGGGTTATGTGTTCAGTCGCACTCTGTGTAAGTACGTGGAATGAAATCTTTGTAGTAGCGTTGTTACAGGTACGGGTGTCTGATCGCACTCCGTATGGAATGCAAATCGAATCC

>NZ_CP018620|3|3|2085475-2086230|CRISPRCasFinder
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TGAATTGTCTCGACATACGTCCATGGCCTATGCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CCTATCCGAACGTGTGTAGGGGTTTTGTTATCG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TCAGCTTCAGCTTGGATTCTCTTGGCATCAAGCAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AGGAATACCGTAAATTGCTCCGCGATTCTATTTGC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GAAACTCGCCAACGTAAGTTGATTGCGAAAGAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCTCGCTCACTGGCGGTTTGTATGTGACCAC
ATCGCACTCTATATGAGTGCGTGGATTGAAAT	CAGCTTAGTGGTTTCGCGCTGGAGGTTCTGGAGAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAACCGCAGGCGATATTGCCTGACATTGATTTCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GCTGTAGTACTCACGAGTCTTCTGAGCACCTGTTA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAAAAGGCAACGTATGCAGCCGATCCCACTGGTAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AATCCAAGCGCTTTTATGGGTTATGTGTTCA
GTCGCACTCTGTGTAAGTACGTGGAATGAAAT

>NZ_CP018620|3|2|2085475-2086297|CRT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TGAATTGTCTCGACATACGTCCATGGCCTATGCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	CCTATCCGAACGTGTGTAGGGGTTTTGTTATCG
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TCAGCTTCAGCTTGGATTCTCTTGGCATCAAGCAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AGGAATACCGTAAATTGCTCCGCGATTCTATTTGC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GAAACTCGCCAACGTAAGTTGATTGCGAAAGAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCTCGCTCACTGGCGGTTTGTATGTGACCAC
ATCGCACTCTATATGAGTGCGTGGATTGAAAT	CAGCTTAGTGGTTTCGCGCTGGAGGTTCTGGAGAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAACCGCAGGCGATATTGCCTGACATTGATTTCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GCTGTAGTACTCACGAGTCTTCTGAGCACCTGTTA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAAAAGGCAACGTATGCAGCCGATCCCACTGGTAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AATCCAAGCGCTTTTATGGGTTATGTGTTCA
GTCGCACTCTGTGTAAGTACGTGGAATGAAAT	CTTTGTAGTAGCGTTGTTACAGGTACGGGTGTCTG
ATCGCACTCCGTATGGAATGCAAATCGAATCC

>NZ_CP018620|3|2|2085673-2086167|PILER-CR
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AGGAATACCGTAAATTGCTCCGCGATTCTATTTGC
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GAAACTCGCCAACGTAAGTTGATTGCGAAAGAT
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	TTCTCGCTCACTGGCGGTTTGTATGTGACCAC
ATCGCACTCTATATGAGTGCGTGGATTGAAAT	CAGCTTAGTGGTTTCGCGCTGGAGGTTCTGGAGAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAACCGCAGGCGATATTGCCTGACATTGATTTCA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	GCTGTAGTACTCACGAGTCTTCTGAGCACCTGTTA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT	AAAAAGGCAACGTATGCAGCCGATCCCACTGGTAA
GTCGCACTCTATATGAGTGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018620.1\|WP_074093746.1\|2079067_2081254_-\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP018620.1\|WP_047841829.1\|2076576_2077236_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP018620.1\|WP_074093741.1\|2075003_2075561_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767
NZ_CP018620.1\|WP_074093745.1\|2078565_2078940_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP018620.1\|WP_074093752.1\|2093962_2094622_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP018620.1\|WP_074093751.1\|2093106_2093976_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP018620.1\|WP_074093750.1\|2091177_2093106_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP018620.1\|WP_074093755.1\|2101985_2102195_+\|4-oxalocrotonate-tautomerase	unknown	unknown	gnl\|CDD\|179107
NZ_CP018620.1\|WP_074093754.1\|2095659_2095950_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP018620.1\|WP_074096761.1\|2099666_2101403_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP018620.1\|WP_074093749.1\|2087924_2090381_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP018620.1\|WP_074093753.1\|2094618_2095650_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP018620.1\|WP_017690359.1\|2084227_2084437_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226181
NZ_CP018620.1\|WP_074093740.1\|2074311_2075007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074093742.1\|2075693_2076464_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270217
NZ_CP018620.1\|WP_017690356.1\|2086513_2087305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074096759.1\|2090458_2091181_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_CP018620.1\|WP_074093748.1\|2084801_2085152_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074093747.1\|2081331_2081910_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP018620.1\|WP_074093743.1\|2077269_2078025_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051

Protein	Function_ID	Function_description	E-value
NZ_CP018620.1\|WP_074093746.1\|2079067_2081254_-\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	2.08432e-133
NZ_CP018620.1\|WP_047841829.1\|2076576_2077236_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.80261e-67
NZ_CP018620.1\|WP_074093741.1\|2075003_2075561_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.78102e-15
NZ_CP018620.1\|WP_074093745.1\|2078565_2078940_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	3.73825e-12
NZ_CP018620.1\|WP_074093752.1\|2093962_2094622_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.0136e-28
NZ_CP018620.1\|WP_074093751.1\|2093106_2093976_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	4.17498e-126
NZ_CP018620.1\|WP_074093750.1\|2091177_2093106_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	5.68783e-173
NZ_CP018620.1\|WP_074093755.1\|2101985_2102195_+\|4-oxalocrotonate-tautomerase	gnl\|CDD\|179107	PRK00745, PRK00745, 4-oxalocrotonate tautomerase; Provisional.	9.14414e-06
NZ_CP018620.1\|WP_074093754.1\|2095659_2095950_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.05466e-30
NZ_CP018620.1\|WP_074096761.1\|2099666_2101403_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	6.45752e-64
NZ_CP018620.1\|WP_074093749.1\|2087924_2090381_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.54918e-66
NZ_CP018620.1\|WP_074093753.1\|2094618_2095650_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP018620.1\|WP_017690359.1\|2084227_2084437_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	2.27553e-10
NZ_CP018620.1\|WP_074093747.1\|2081331_2081910_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.76049e-14
NZ_CP018620.1\|WP_074093743.1\|2077269_2078025_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.00124e-137
NZ_CP018620.1\|WP_074093742.1\|2075693_2076464_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270217	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily. This subfamily includes periplasmic binding domain of ATP-binding cassette transporter-like systems that serve as initial receptors in the ABC transport of amino acids and their derivatives in eubacteria. After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically-located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The Abp proteins belong to the PBPI superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.09563e-113
NZ_CP018620.1\|WP_074096759.1\|2090458_2091181_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	7.89204e-97

>NZ_CP018620.1|WP_074093748.1|2084801_2085152_+|hypothetical-protein
MSDRIELASVVIGPFDDVQDFYIYQGYVMNESYIFFLDEGTLWLRHVHKVAHVDHLYINGDTGGIILAEHPQGNVKELIESIVDRLCGMDALTFLTDVLLWTPERVDMNLKLDRFH
>NZ_CP018620.1|WP_017690359.1|2084227_2084437_-|helix-turn-helix-domain-containing-protein
MALKPSYKPMEITLIKKDKNKTYLRTQLGISPSTLAKMSNGEFVALSVIARICEDLQCRIEEVVEFIEE
>NZ_CP018620.1|WP_074093747.1|2081331_2081910_-|TetR/AcrR-family-transcriptional-regulator
MKTIDRRQQVMDSAEKSFALFGYKATTMEQVARLANVGKGTIYTFFDNKEELFSEILRSIIADMRQITERTVKEENSFLDNVHMSMDSLLEYREEHELLIKLFQEVNEFGTPQAKEGLQKVETAILEYLERQVSRAMELEQIRRDDPKLVSFVLLKLYVTLTSDWNKTHPTLHKDQIKDFVALFLKSGLSPI
>NZ_CP018620.1|WP_074093746.1|2079067_2081254_-|YhgE/Pip-domain-containing-protein
MKSFHVFGQDLKSAFKKPKVFIPILVVLFIPVLYSGLFLNAFWDPYGKMNELPVAVVNTDQGATYNDKSLEVGQNLVDELKKSNDFDWQFVTREQAEQGMEDDKYYMTIVIPEDFSTKATTLMDEHPEPADLIYEPNEGYNFLAGQIGGTAVKQIRSKVAAKVTESYTETLLDQVEKISSGLSDAGDGAGKINEGAAKLDNGAATLKKNLSKLADGTDKLETGVAPLKEGTATLAQGIGTLHAGANSLSDGLSQLAAAGTKLGNGALQAEAGGKQLQAGIQSAQEGAAKLDAGLAASEQGSAKLAAGLQTSVEGSSKVSEGAKAVAQGLAQLAEASPELAASPAVQQLLAASQAVATGSEQVYQGGQQLVAGSQNLHAAQQQLHQGSSQLVQGEQQLVQGATQLSAGQEKLATGLQQFNSKLSEATAGGTKLADGSGQLNAGAGKLVAGVSQLTDGISTLADGSHKLDEGAGQLKEGTLKLTDGSGELATKLNEAAEQTGSVKKTDELVTMYAEPVQVDEHKYNEVPNYGTGFSPYFLSLGLFVGALIATLVVPTRGSTVSEASGWNRFVSKTLSFTLMSAVQSLLASWLVLSVLGLDVQSVPLFLLFSFVTSLSFMYIIQALVTWLENPGRFLAILMLIFQLTTSAGTFPLELIPNWLKVFNPWLPMTYSVTGYKAVISSGQFGVTWDQIGILCIFAVMGLGGTLTYFLMHHTTENANVSSEVALHL
>NZ_CP018620.1|WP_074093745.1|2078565_2078940_+|DUF4190-domain-containing-protein
MNILNKQGGFTLEHRENDVDRYYNDTLPPPPYVIPKTNSKSIAALVLGILSIVIPYVGLLIGIVAIIIASISLKEIKNRMEQGRGLAIAGLVCGIIGTAIYVLLILLVLLFNFAISSSEIYSTY
>NZ_CP018620.1|WP_074093743.1|2077269_2078025_+|amino-acid-ABC-transporter-ATP-binding-protein
MTHIIEVNQLRKSFGTLDVLKQVSFNVEPGEVIAVIGPSGSGKSTMLRSLIHLEDISGGTIRIQDQTLVDNGRYAGAADIRKMTDRMGMVFQHFNLFPHLTVQDNLELAPKTLKKESSSVIRYRSLELLGKVGLSDKADVYPANLSGGQKQRVAIARALMMQPDILLFDEPTSALDPELTGEVLRVIKQLAQENMTMMIVTHEMGFARDVADRVFFMDNGEIAEAGPPEQIFGNPRLARTRTFLQRVEVEG
>NZ_CP018620.1|WP_047841829.1|2076576_2077236_+|amino-acid-ABC-transporter-permease
MSWDYLSTILKPMLEGAQTTIFMFLLAIVLSVPLGFAVTLAMRSQIKLLAWIAHTYVYVMRGTPLLLQILFFCFGLPLLPVIGEYLVFDRFVAAGIAFILNYAAYFAEIFRGGLLSIDKGQHEAAKVLGLTKWQTMTKVIIPQMIRVVLPATANESITLIKDTALLYAVAVPELLYYAQAAVNRDLQLTPFFVAAVMYLLMTLVLTVLFKALEKRFSFE
>NZ_CP018620.1|WP_074093742.1|2075693_2076464_+|amino-acid-ABC-transporter-substrate-binding-protein
MRKKAILLLFISICVLIVAGCSSSASKDDNTIVVGIDDKFAPMGFRDEQNEIVGFDIDYARAAAEKMGKEITFQPIDWSSKESELNSGRIDMIWNGYTITDERKEKVLFTKPYLENSQVAITLADSPITKLDELDGKNVGLQALSSAADALAASPLKDKVKASEFKDNVLALTDLKTKRLDAVIIDEVVARYYMSKEEGTFKLMDESLAPEQYGIGIKKGNEELLNQLQKALDELNVDGTAAKISTQWLGEDKVLK
>NZ_CP018620.1|WP_074093741.1|2075003_2075561_+|DUF4825-domain-containing-protein
MRIRNIWIITLVVLGIIGLVIVEGFVNPKIEAKQAQYEEEQQNPLTHDFAALAKYRSPYMGDHSNLSHLNQALPLRERLNGYQLYPETFTVQVNYSLDTREMDAEELERILVYNAVANFVMIDNLEQIVYQFENTSHTLRRESAQQWTGTELKELQNPELWNSNVREKLVEPAQVKEAVSQIVDN
>NZ_CP018620.1|WP_074093740.1|2074311_2075007_+|hypothetical-protein
MRLETRITRHVNRLFAHAQDTLDNRELKEEIHSNLAARIDDYISQGMSEEKAFQTAIQHIAGMDEVMSDHRRVQRVPYWTALLQSALIYSLIAWIITIPMRVLMQGSAINNLLMIVSLIVGGMYVLYLLINKSNDSATSVKTTVIRIPVLVQWKRRIWWLWAALILVLWGTQAALRFGSNIWFNRPIQVDGPYQFAVIVIAFAIPLLSVIIPLVVHRAYRIVSKYEVSDVL
>NZ_CP018620.1|WP_017690356.1|2086513_2087305_+|hypothetical-protein
MSRYYDGYGLDSTVTLLRIAYGLDNWREVVKLGETLYEESLRIYNLQMLTKEQDIVEIHTQRAIVYYIGYSRLMQGIAYQKLLEFDKARECVLQYSDFQWIKLTNQETLNEIEFYSDIAKINLMVLDLLEGNATKLDEYVAYIQKSKGEIMSGILTLLEANRLNNLPIQEFEYLFEKHRLISDTTIMTDIDVSYYLKFSFELAMYYSRNGNDSDAIDILLNCLAISPKINQNKIKYVAFFEKIREQATHAQINTYKSILEGML
>NZ_CP018620.1|WP_074093749.1|2087924_2090381_+|CRISPR-associated-helicase/endonuclease-Cas3
MTYIAHICQKDGRIQTVQDHLVEVKQGAEQAGEKIGVKYLAGIAGLLHDMGKNTDLFRNYIQEAVANPDAPPRKGSVDHSTAGGKLLHSLYHGSGTTLESKYTAEWIANCIISHHQGLRDYISPDKTSPYMERVISRQIDQYEQAKEEFFKHNLPGQLDHMFKQATQELQGYIQIIKEHKLPPIAGALLIKYMFSCLIDADRTNTRRFEENETLAEEIDYKSFFLQSYELLSQHLSKLEHSSIVDTPINRLRREMSRQCEQFAYRPSGVYTLSIPTGGGKTLASMRYALRHAIEHNKQRIIYIVPYTTIIEQNAAEIRNILKNDDMILEHHSNVVDDKDDERHEGDEGETLDLRKKNLKLARDHWDRPIIFTTMVQFLNTFYAKGTRNVRRLHQLSNAVIVFDEVQSVPVHCISLFNAALNFLHVIGRSSLLLCTATQPALDFVKHKLHFSKQPEIIQNLDEVGRSFKRVDLQDLTRESLSGWGAEEVSSFVQEQMREVDSVLVILNTKTAVRKLFEQLNEVEWLRESGIQVVHLSTNMCAAHRKEVLSGEYGVIPRLAKGERIICVSTQLIEAGVNISFDCVVRSLAGLDSIAQAAGRCNRHGKDKVRNVYIIRSSDEVLTNLPEIQIGAEKTERVLQEFEDDPGSLGDDLLSPKAMSRYFEYYFNDIGDKMHYPIPKLEQNLFDLMDRNRYYVDAYKKKHDCRPEAVNHYAIATAEKYFEAISTNATPVIVPYGEEGKELILDLNGAIEPGEMSQLLRKAQQYTVNIYDHELRALEKNGDVRPLLHGHVLALREPAYSDDFGVESKGEGAWEPMMI
>NZ_CP018620.1|WP_074096759.1|2090458_2091181_+|type-I-C-CRISPR-associated-protein-Cas5
MRNQIEFEVSGKYALFTDPLTKLGGEKFSYQIPTYQALKGIVESIYWKPTLTWIVDEVRIMNPIQTESKGMRPIEYSGGNTLAYYTYLRDVRYQVKAHFIFNPHREDLVHDQNEHKHHNIAKRAVQVGGRRDIFLGTRECQGYVEPCQFGEDDSFYDRIGELDFGTMLHGISYPDETGSNEREVRLWKAKMQHGVIQFIRPDECTLVRKVGEGTAKIFDAGNMQSVDDLHSEWFGNEVSE
>NZ_CP018620.1|WP_074093750.1|2091177_2093106_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLANLSRTYDDHAKVVGQFEMKKNGKEYALIPISHTTQTAHIEVHLNGKGDIVNAKVVEKNDGSTIIPCTEASASRTSAPVPYPLFDKLSYVAGDYTQFCGEVKGTPYQDYLNQLKAWCESPFSHPRVQSVLHYVSKGTLIADLVNRGILYVDSQGKLLEKWIAGPGDQEGKKPDIFNVIAADQSGAFVRFAVDIPGEPESRLWRDASVQQSFIHFYEMSLQDKDICFVTGDYLPVADKHASRIRHSGDKSKLISANDSSGFTYRGRFRTSRDAAVVSYEASQKGHNALKWLIDRQGTTIDGKVFLVWGSTSLDMPEPQEDAFSLWDEDDEEAFAGGDTTHKEFALQIRKAIGGYRYDGEYNSKHEVTLMTLDAATPGRMSIMYYRSLDQNEYLDRILAWHESCYWLHRYRKNKNDKPVSFVGAPATKDIAFAAYGPRASDKVVKGLMERMLPCIIDERPIPLDIVRSSIQRASNPVGMENWEWEKTLSITCALVNKKEGYGVSLNTETTDRSYVFGRMLAIADVLERSALGKEEKRATNAIRYMNAFAQRPGRTWSIIQSNLQPYQARMGTGARYYNSLLDEVGDKLQLEDFTDKPLTGLYLLGFYSQRNDLYTSRKDKEAAATFDKDDENQLNEQGDN
>NZ_CP018620.1|WP_074093751.1|2093106_2093976_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTLDHKIDFAVVLSVRNANPNGDPLNGNRPRQNYDGLGEISDVCIKRKIRNRLQDMGESILVQSDEKRNDAHRSIKDRVDANENVQEHAKGKKANKDLYAEAACQSWIDVRSFGQVFAFSGTDVSVGIRGPVSIHTAVSLDRIDISSMQITKSVNSVTTAKDPDKKGSDTMGMKHRVDFGVYVFYGSINTQLAEKTGFTYEDAEKIRESLRTLFENDTSSARPDGSMEVHQLYWWEHSSKMGQYSSAKVHRSLQIELKPGVAEAKSYDDYNYTVVPLEGLAVQEYEGL
>NZ_CP018620.1|WP_074093752.1|2093962_2094622_+|CRISPR-associated-protein-Cas4
MKDYNEEDYLLLSGIQHFNFCRRQWALIHIEQQWEDNVRTIEGDHLHRKADQPALREKRGDKLVVRALPVQSRELGITGICDVVEFIRDPSGVSLAGEEGLYLPFPVEYKRGKPKRNDSDHSQLVAQVMCLEEMLVCDIPKAYFYYDEIKHRIEVIITAADRERVKASIQEMRHYFERNHTPKAKAGPHCLSCSLNNICVPDILNKRSVSSYIESRLNE
>NZ_CP018620.1|WP_074093753.1|2094618_2095650_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTLPDTYLGLDGENIVVKQEEEILARYPLHNLEAVCTFGYAGVSPALMGACASRNVSLTFMTRTGRFLARVIGEDRGNVVLRKEQYRISDDEVRSARVARNMITGKLYNNKWILERATRDYALRIDTERIKKVTESLGETMKLLREVEQLDILRGLEGSAAVQYNSVFDDLILQQKESFYFYGRSRRPPLDKVNALLSFAYTLLANDMKSALESVGLDAYVGFLHRDRPGRASLALDMMEELRGVYADRFVLSLINKKVVNDKGFYVKENLAVIMDDETRKKVLKAWQERKQEKIMHPYLNEKIPWGLVPYTQALLLARYIRGDLDEYPPFLWK
>NZ_CP018620.1|WP_074093754.1|2095659_2095950_+|CRISPR-associated-endonuclease-Cas2
MLILITYDVSTIDSEGRRRLSKVAKKCVDHGQRVQNSVFECILDAAQFRRLRFELEELIDKDTDSLRFYNLGDNYKRKVQHVGAKDSYDMGDPLIL
>NZ_CP018620.1|WP_074096761.1|2099666_2101403_-|methyl-accepting-chemotaxis-protein
MPFFIKNLVISFGSIMLIGVILITAAYQLQKNILVEQLHDQATVITQKWYDDLDTAKVAEAAKEKSYSGPVQLEMKTYLDSIHEFYPNIAQAYIFGSELEQGNGTSIIAIPTNLLEPFEEGNLPAGAMYPLPQNNVVVLEQMKKDGKPAFSDFYTDEYGTWTTLIYPINNADGSMYAALYFDVDASAVPKGLNKLLSYGLMFLIGFLILFMVLQFILLKRTLLPIRNLMKGIEEVSTGNLDVTIDTGRDDLGIINEKFNAMIHRFNTTIYKVQNASHHLSESSKQLLGISEKNNVNIQSISTNIREISTGLVSQDKATVENARAMTEMSTVVQTIASSSADVADEALSMEQRSSTGNVVMQQVIEQMRLISGAVQNTSNSIQSLENNSNQISNIVNVITEIAGQTNLLALNASIEAARAGEEGRGFAVVAGEVRNLAEQSQESAKQIRQLIEEIQRDIMQSSEAMQLGSKEVTKGLEVTQETGVFFENILTATNKVANQIQDISSSTEEISASTQEMSATADELSANVSKAASSSKQIEQSIDEQEASMAAIVSASDELSVVSEQLQELISFFKVRAE
>NZ_CP018620.1|WP_074093755.1|2101985_2102195_+|4-oxalocrotonate-tautomerase
MPEIMIRLYEGRTDEQKQEIVEVFTRELSRIIDREPDYISIEFNEIPWDENVPDNLRSMPSQKQGGKKT

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Crispr_ID: NZ_CP018620_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018620_4

2096144-2098404

TypeI

Consensus_repeat	Method
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	PILER-CR
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CRT

33 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP018620_4

>merge|NZ_CP018620|4|2096144-2098404|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAATTTTCTCGTCGATGAGGGCCCCTGTGAACTCGCCCCGTCGCACTCTGTATGGAGTGCGTGGATTGAAATATCTATATGGGAACAATCGTTCACGGGTCCGGAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATCACCGCGAGTGTAGCCAGGACAAAAGCCGCCATCGTCGCACTCTGTATGGAGTGCGTGGATTGAAATAAACGATTCCTGGGGATGAACCCCGGACTATCGGCGTCGCACTCTGTATGGAGTGCGTGGATTGAAATACGGCTGCGGGTTGTGTGTCAAACCGCGCCAGGTTGTCGCACTCTGTATGGAGTGCGTGGATTGAAATCGACCATGTACGATAGGAAACCTTCCGCAGGACTCGTCGCACTCTGTATGGAGTGCGTGGATTGAAATACCCTTGGTTCCTGATCGTTAGACCAATGCTTGAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTTCGCGGGAGTGACCGTTGATTTATACGTCACCAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATAACCTTCGGACCGTTAGGTTGCTGATCTCGGGGCAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATAGCTTCGTACAGCGGGTTATACTCCGGTACAATGTCGCACTCTGTATGGAGTGCGTGGATTGAAATGAAAGCATGGTGGTTACCTCACACCAACCAAACTGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTTGCTTCTCCTAGATCTGTACCTCCGTAACCTTTCGTCGCACTCTGTATGGAGTGCGTGGATTGAAATAGTCTCAGCGTTGTAGTAGTCATCTCGATACAAAAAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATAGTCTCAGCGTTGTAGTAGTCATCTCGATACAAAAAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATGGATACGCCTACGGTAAGCTCCGGCAACCTCGACGTCGCACTCTGTATGGAGTGCGTGGATTGAAATAACGTCAGCGGACGCGGTGTTTAACAATGGATGGTCGCACTCTGTATGGAGTGCGTGGATTGAAATATCGCAGAATCACGCGAAGGTTGGCCGATAGCTTGTCGCACTCTGTATGGAGTGCGTGGATTGAAATCCTTTCTTGAACCGATCAGCAAGGCCAGCCCACTGGGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTTCGATGGCGAACTTCAACGGGAGGACGTAAGACGTCGCACTCTGTATGGAGTGCGTGGATTGAAATGTTAACCCGGCGATCTGATCAGCAAACCCACGTGCGTCGCACTCTGTATGGAGTGCGTGGATTGAAATACACCACCCAATTCCCGGTTGCCCGCTATGGCCTGTCGCACTCTGTATGGAGTGCGTGGATTGAAATATCGATAAACTTGGTTTGTTTGGCCGTCAATGCCGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTATATCCAACGCCTTTGTTTCGGCTGAACACGATCGTCGCACTCTGTATGGAGTGCGTGGATTGAAATCCGCATTGGGCGACAAAGATTGCTGTGTTGGATTGGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTTCCAACGCTTGCGGAAGTACTCCAGTGGCTGCCGGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTGCGTCCTTAATGAACATGATCGTGAGTCGGATAAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTTAAGTGCGGCCTTTAATGGCGTGGCCTGCGTTTGTCGCACTCTGTATGGAGTGCGTGGATTGAAATGTCCATGATGTGAAACGGGATATCAACGTCCTTCAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTTGCGGACTCTCGTTAGCTGCCGCTTCTAGAACTAGTCGCACTCTGTATGGAGTGCGTGGATTGAAATCAGTAGTCAGAAGGGCTTTTTGCGAGTACATATTGTCGCACTCTGTATGGAGAGCGTGGATTGAAATTACATGGAGTATGAGTGGATTCAAGATTAGGGGGGCGCACTACGTATGAAGTGCGTGAATTGAAATAATGAGCTCGTAAGAGCTATGGACACGGCCCCCTCGTCGCACTCCGTACGGATTGCGTGGATTGAAATTAACCAAGGAGGCATATACAGATGGAGGGCATATTGTCCCACTCCGTGTGGAGTATGTGGATTTAAAT

>NZ_CP018620|4|3|2096144-2098202|PILER-CR
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTTCTCGTCGATGAGGGCCCCTGTGAACTCGCCCC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ATCTATATGGGAACAATCGTTCACGGGTCCGGA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CACCGCGAGTGTAGCCAGGACAAAAGCCGCCATC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AAACGATTCCTGGGGATGAACCCCGGACTATCGGC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ACGGCTGCGGGTTGTGTGTCAAACCGCGCCAGGTT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CGACCATGTACGATAGGAAACCTTCCGCAGGACTC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ACCCTTGGTTCCTGATCGTTAGACCAATGCTTGA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTCGCGGGAGTGACCGTTGATTTATACGTCACCA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACCTTCGGACCGTTAGGTTGCTGATCTCGGGGCA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AGCTTCGTACAGCGGGTTATACTCCGGTACAAT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GAAAGCATGGTGGTTACCTCACACCAACCAAACT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTGCTTCTCCTAGATCTGTACCTCCGTAACCTTTC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AGTCTCAGCGTTGTAGTAGTCATCTCGATACAAAAA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AGTCTCAGCGTTGTAGTAGTCATCTCGATACAAAAA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GGATACGCCTACGGTAAGCTCCGGCAACCTCGAC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACGTCAGCGGACGCGGTGTTTAACAATGGATG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ATCGCAGAATCACGCGAAGGTTGGCCGATAGCTT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CCTTTCTTGAACCGATCAGCAAGGCCAGCCCACTGG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTCGATGGCGAACTTCAACGGGAGGACGTAAGAC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GTTAACCCGGCGATCTGATCAGCAAACCCACGTGC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ACACCACCCAATTCCCGGTTGCCCGCTATGGCCT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ATCGATAAACTTGGTTTGTTTGGCCGTCAATGCC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TATATCCAACGCCTTTGTTTCGGCTGAACACGATC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CCGCATTGGGCGACAAAGATTGCTGTGTTGGATTG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTCCAACGCTTGCGGAAGTACTCCAGTGGCTGCCG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TGCGTCCTTAATGAACATGATCGTGAGTCGGATAA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTAAGTGCGGCCTTTAATGGCGTGGCCTGCGTTT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GTCCATGATGTGAAACGGGATATCAACGTCCTTCA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTGCGGACTCTCGTTAGCTGCCGCTTCTAGAACTA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CAGTAGTCAGAAGGGCTTTTTGCGAGTACATATT
GTCGCACTCTGTATGGAGAGCGTGGATTGAAAT

>NZ_CP018620|4|4|2096144-2098404|CRISPRCasFinder
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTTCTCGTCGATGAGGGCCCCTGTGAACTCGCCCC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ATCTATATGGGAACAATCGTTCACGGGTCCGGA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CACCGCGAGTGTAGCCAGGACAAAAGCCGCCATC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AAACGATTCCTGGGGATGAACCCCGGACTATCGGC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ACGGCTGCGGGTTGTGTGTCAAACCGCGCCAGGTT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CGACCATGTACGATAGGAAACCTTCCGCAGGACTC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ACCCTTGGTTCCTGATCGTTAGACCAATGCTTGA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTCGCGGGAGTGACCGTTGATTTATACGTCACCA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACCTTCGGACCGTTAGGTTGCTGATCTCGGGGCA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AGCTTCGTACAGCGGGTTATACTCCGGTACAAT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GAAAGCATGGTGGTTACCTCACACCAACCAAACT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTGCTTCTCCTAGATCTGTACCTCCGTAACCTTTC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AGTCTCAGCGTTGTAGTAGTCATCTCGATACAAAAA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AGTCTCAGCGTTGTAGTAGTCATCTCGATACAAAAA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GGATACGCCTACGGTAAGCTCCGGCAACCTCGAC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACGTCAGCGGACGCGGTGTTTAACAATGGATG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ATCGCAGAATCACGCGAAGGTTGGCCGATAGCTT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CCTTTCTTGAACCGATCAGCAAGGCCAGCCCACTGG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTCGATGGCGAACTTCAACGGGAGGACGTAAGAC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GTTAACCCGGCGATCTGATCAGCAAACCCACGTGC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ACACCACCCAATTCCCGGTTGCCCGCTATGGCCT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ATCGATAAACTTGGTTTGTTTGGCCGTCAATGCC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TATATCCAACGCCTTTGTTTCGGCTGAACACGATC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CCGCATTGGGCGACAAAGATTGCTGTGTTGGATTG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTCCAACGCTTGCGGAAGTACTCCAGTGGCTGCCG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TGCGTCCTTAATGAACATGATCGTGAGTCGGATAA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTAAGTGCGGCCTTTAATGGCGTGGCCTGCGTTT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GTCCATGATGTGAAACGGGATATCAACGTCCTTCA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTGCGGACTCTCGTTAGCTGCCGCTTCTAGAACTA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CAGTAGTCAGAAGGGCTTTTTGCGAGTACATATT
GTCGCACTCTGTATGGAGAGCGTGGATTGAAAT	TACATGGAGTATGAGTGGATTCAAGATTAGGGG
GGCGCACTACGTATGAAGTGCGTGAATTGAAAT	AATGAGCTCGTAAGAGCTATGGACACGGCCCCCTC
GTCGCACTCCGTACGGATTGCGTGGATTGAAAT	TAACCAAGGAGGCATATACAGATGGAGGGCATATT
GTCCCACTCCGTGTGGAGTATGTGGATTTAAAT

>NZ_CP018620|4|3|2096144-2098404|CRT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTTCTCGTCGATGAGGGCCCCTGTGAACTCGCCCC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ATCTATATGGGAACAATCGTTCACGGGTCCGGA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CACCGCGAGTGTAGCCAGGACAAAAGCCGCCATC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AAACGATTCCTGGGGATGAACCCCGGACTATCGGC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ACGGCTGCGGGTTGTGTGTCAAACCGCGCCAGGTT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CGACCATGTACGATAGGAAACCTTCCGCAGGACTC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ACCCTTGGTTCCTGATCGTTAGACCAATGCTTGA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTCGCGGGAGTGACCGTTGATTTATACGTCACCA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACCTTCGGACCGTTAGGTTGCTGATCTCGGGGCA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AGCTTCGTACAGCGGGTTATACTCCGGTACAAT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GAAAGCATGGTGGTTACCTCACACCAACCAAACT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTGCTTCTCCTAGATCTGTACCTCCGTAACCTTTC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AGTCTCAGCGTTGTAGTAGTCATCTCGATACAAAAA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AGTCTCAGCGTTGTAGTAGTCATCTCGATACAAAAA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GGATACGCCTACGGTAAGCTCCGGCAACCTCGAC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	AACGTCAGCGGACGCGGTGTTTAACAATGGATG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ATCGCAGAATCACGCGAAGGTTGGCCGATAGCTT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CCTTTCTTGAACCGATCAGCAAGGCCAGCCCACTGG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTCGATGGCGAACTTCAACGGGAGGACGTAAGAC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GTTAACCCGGCGATCTGATCAGCAAACCCACGTGC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ACACCACCCAATTCCCGGTTGCCCGCTATGGCCT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	ATCGATAAACTTGGTTTGTTTGGCCGTCAATGCC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TATATCCAACGCCTTTGTTTCGGCTGAACACGATC
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CCGCATTGGGCGACAAAGATTGCTGTGTTGGATTG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTCCAACGCTTGCGGAAGTACTCCAGTGGCTGCCG
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TGCGTCCTTAATGAACATGATCGTGAGTCGGATAA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTAAGTGCGGCCTTTAATGGCGTGGCCTGCGTTT
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	GTCCATGATGTGAAACGGGATATCAACGTCCTTCA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	TTGCGGACTCTCGTTAGCTGCCGCTTCTAGAACTA
GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT	CAGTAGTCAGAAGGGCTTTTTGCGAGTACATATT
GTCGCACTCTGTATGGAGAGCGTGGATTGAAAT	TACATGGAGTATGAGTGGATTCAAGATTAGGGG
GGCGCACTACGTATGAAGTGCGTGAATTGAAAT	AATGAGCTCGTAAGAGCTATGGACACGGCCCCCTC
GTCGCACTCCGTACGGATTGCGTGGATTGAAAT	TAACCAAGGAGGCATATACAGATGGAGGGCATATT
GTCCCACTCCGTGTGGAGTATGTGGATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018620.1\|WP_074093754.1\|2095659_2095950_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP018620.1\|WP_074093761.1\|2110569_2112120_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270298
NZ_CP018620.1\|WP_074093752.1\|2093962_2094622_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP018620.1\|WP_074093753.1\|2094618_2095650_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP018620.1\|WP_074093751.1\|2093106_2093976_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP018620.1\|WP_074096761.1\|2099666_2101403_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP018620.1\|WP_074093758.1\|2105136_2106975_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP018620.1\|WP_074093757.1\|2104102_2105140_+\|response-regulator	unknown	unknown	gnl\|CDD\|381091
NZ_CP018620.1\|WP_157116053.1\|2102191_2103169_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226666
NZ_CP018620.1\|WP_074093755.1\|2101985_2102195_+\|4-oxalocrotonate-tautomerase	unknown	unknown	gnl\|CDD\|179107
NZ_CP018620.1\|WP_074093756.1\|2103181_2104060_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP018620.1\|WP_074093759.1\|2107006_2107774_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|235500
NZ_CP018620.1\|WP_074093750.1\|2091177_2093106_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP018620.1\|WP_074093749.1\|2087924_2090381_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP018620.1\|WP_017690359.1\|2084227_2084437_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226181
NZ_CP018620.1\|WP_074093760.1\|2107808_2110208_+\|DUF4962-domain-containing-protein	unknown	unknown	gnl\|CDD\|379827
NZ_CP018620.1\|WP_074093748.1\|2084801_2085152_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_017690356.1\|2086513_2087305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074093762.1\|2112216_2116542_+\|alpha/beta-hydrolase-fold-domain-containing-protein	unknown	unknown	gnl\|CDD\|223730
NZ_CP018620.1\|WP_074096759.1\|2090458_2091181_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847

Protein	Function_ID	Function_description	E-value
NZ_CP018620.1\|WP_074093754.1\|2095659_2095950_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.05466e-30
NZ_CP018620.1\|WP_074093761.1\|2110569_2112120_+\|extracellular-solute-binding-protein	gnl\|CDD\|270298	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	7.77392e-114
NZ_CP018620.1\|WP_074093752.1\|2093962_2094622_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	4.0136e-28
NZ_CP018620.1\|WP_074093753.1\|2094618_2095650_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP018620.1\|WP_074093751.1\|2093106_2093976_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	4.17498e-126
NZ_CP018620.1\|WP_074096761.1\|2099666_2101403_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	6.45752e-64
NZ_CP018620.1\|WP_074093758.1\|2105136_2106975_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	8.36533e-45
NZ_CP018620.1\|WP_074093757.1\|2104102_2105140_+\|response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.33044e-48
NZ_CP018620.1\|WP_157116053.1\|2102191_2103169_+\|ABC-transporter-permease-subunit	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	1.26926e-123
NZ_CP018620.1\|WP_074093755.1\|2101985_2102195_+\|4-oxalocrotonate-tautomerase	gnl\|CDD\|179107	PRK00745, PRK00745, 4-oxalocrotonate tautomerase; Provisional.	9.14414e-06
NZ_CP018620.1\|WP_074093756.1\|2103181_2104060_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.88742e-67
NZ_CP018620.1\|WP_074093759.1\|2107006_2107774_+\|glucose-1-dehydrogenase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	2.02016e-91
NZ_CP018620.1\|WP_074093750.1\|2091177_2093106_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	5.68783e-173
NZ_CP018620.1\|WP_074093749.1\|2087924_2090381_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.54918e-66
NZ_CP018620.1\|WP_017690359.1\|2084227_2084437_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	2.27553e-10
NZ_CP018620.1\|WP_074093760.1\|2107808_2110208_+\|DUF4962-domain-containing-protein	gnl\|CDD\|379827	pfam16332, DUF4962, Domain of unknown function (DUF4962). This family consists of uncharacterized proteins around 870 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.	1.8383e-26
NZ_CP018620.1\|WP_074093762.1\|2112216_2116542_+\|alpha/beta-hydrolase-fold-domain-containing-protein	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	3.18625e-43
NZ_CP018620.1\|WP_074096759.1\|2090458_2091181_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	7.89204e-97

>NZ_CP018620.1|WP_074093754.1|2095659_2095950_+|CRISPR-associated-endonuclease-Cas2
MLILITYDVSTIDSEGRRRLSKVAKKCVDHGQRVQNSVFECILDAAQFRRLRFELEELIDKDTDSLRFYNLGDNYKRKVQHVGAKDSYDMGDPLIL
>NZ_CP018620.1|WP_074093753.1|2094618_2095650_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLFVTLPDTYLGLDGENIVVKQEEEILARYPLHNLEAVCTFGYAGVSPALMGACASRNVSLTFMTRTGRFLARVIGEDRGNVVLRKEQYRISDDEVRSARVARNMITGKLYNNKWILERATRDYALRIDTERIKKVTESLGETMKLLREVEQLDILRGLEGSAAVQYNSVFDDLILQQKESFYFYGRSRRPPLDKVNALLSFAYTLLANDMKSALESVGLDAYVGFLHRDRPGRASLALDMMEELRGVYADRFVLSLINKKVVNDKGFYVKENLAVIMDDETRKKVLKAWQERKQEKIMHPYLNEKIPWGLVPYTQALLLARYIRGDLDEYPPFLWK
>NZ_CP018620.1|WP_074093752.1|2093962_2094622_+|CRISPR-associated-protein-Cas4
MKDYNEEDYLLLSGIQHFNFCRRQWALIHIEQQWEDNVRTIEGDHLHRKADQPALREKRGDKLVVRALPVQSRELGITGICDVVEFIRDPSGVSLAGEEGLYLPFPVEYKRGKPKRNDSDHSQLVAQVMCLEEMLVCDIPKAYFYYDEIKHRIEVIITAADRERVKASIQEMRHYFERNHTPKAKAGPHCLSCSLNNICVPDILNKRSVSSYIESRLNE
>NZ_CP018620.1|WP_074093751.1|2093106_2093976_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTLDHKIDFAVVLSVRNANPNGDPLNGNRPRQNYDGLGEISDVCIKRKIRNRLQDMGESILVQSDEKRNDAHRSIKDRVDANENVQEHAKGKKANKDLYAEAACQSWIDVRSFGQVFAFSGTDVSVGIRGPVSIHTAVSLDRIDISSMQITKSVNSVTTAKDPDKKGSDTMGMKHRVDFGVYVFYGSINTQLAEKTGFTYEDAEKIRESLRTLFENDTSSARPDGSMEVHQLYWWEHSSKMGQYSSAKVHRSLQIELKPGVAEAKSYDDYNYTVVPLEGLAVQEYEGL
>NZ_CP018620.1|WP_074093750.1|2091177_2093106_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSWLANLSRTYDDHAKVVGQFEMKKNGKEYALIPISHTTQTAHIEVHLNGKGDIVNAKVVEKNDGSTIIPCTEASASRTSAPVPYPLFDKLSYVAGDYTQFCGEVKGTPYQDYLNQLKAWCESPFSHPRVQSVLHYVSKGTLIADLVNRGILYVDSQGKLLEKWIAGPGDQEGKKPDIFNVIAADQSGAFVRFAVDIPGEPESRLWRDASVQQSFIHFYEMSLQDKDICFVTGDYLPVADKHASRIRHSGDKSKLISANDSSGFTYRGRFRTSRDAAVVSYEASQKGHNALKWLIDRQGTTIDGKVFLVWGSTSLDMPEPQEDAFSLWDEDDEEAFAGGDTTHKEFALQIRKAIGGYRYDGEYNSKHEVTLMTLDAATPGRMSIMYYRSLDQNEYLDRILAWHESCYWLHRYRKNKNDKPVSFVGAPATKDIAFAAYGPRASDKVVKGLMERMLPCIIDERPIPLDIVRSSIQRASNPVGMENWEWEKTLSITCALVNKKEGYGVSLNTETTDRSYVFGRMLAIADVLERSALGKEEKRATNAIRYMNAFAQRPGRTWSIIQSNLQPYQARMGTGARYYNSLLDEVGDKLQLEDFTDKPLTGLYLLGFYSQRNDLYTSRKDKEAAATFDKDDENQLNEQGDN
>NZ_CP018620.1|WP_074096759.1|2090458_2091181_+|type-I-C-CRISPR-associated-protein-Cas5
MRNQIEFEVSGKYALFTDPLTKLGGEKFSYQIPTYQALKGIVESIYWKPTLTWIVDEVRIMNPIQTESKGMRPIEYSGGNTLAYYTYLRDVRYQVKAHFIFNPHREDLVHDQNEHKHHNIAKRAVQVGGRRDIFLGTRECQGYVEPCQFGEDDSFYDRIGELDFGTMLHGISYPDETGSNEREVRLWKAKMQHGVIQFIRPDECTLVRKVGEGTAKIFDAGNMQSVDDLHSEWFGNEVSE
>NZ_CP018620.1|WP_074093749.1|2087924_2090381_+|CRISPR-associated-helicase/endonuclease-Cas3
MTYIAHICQKDGRIQTVQDHLVEVKQGAEQAGEKIGVKYLAGIAGLLHDMGKNTDLFRNYIQEAVANPDAPPRKGSVDHSTAGGKLLHSLYHGSGTTLESKYTAEWIANCIISHHQGLRDYISPDKTSPYMERVISRQIDQYEQAKEEFFKHNLPGQLDHMFKQATQELQGYIQIIKEHKLPPIAGALLIKYMFSCLIDADRTNTRRFEENETLAEEIDYKSFFLQSYELLSQHLSKLEHSSIVDTPINRLRREMSRQCEQFAYRPSGVYTLSIPTGGGKTLASMRYALRHAIEHNKQRIIYIVPYTTIIEQNAAEIRNILKNDDMILEHHSNVVDDKDDERHEGDEGETLDLRKKNLKLARDHWDRPIIFTTMVQFLNTFYAKGTRNVRRLHQLSNAVIVFDEVQSVPVHCISLFNAALNFLHVIGRSSLLLCTATQPALDFVKHKLHFSKQPEIIQNLDEVGRSFKRVDLQDLTRESLSGWGAEEVSSFVQEQMREVDSVLVILNTKTAVRKLFEQLNEVEWLRESGIQVVHLSTNMCAAHRKEVLSGEYGVIPRLAKGERIICVSTQLIEAGVNISFDCVVRSLAGLDSIAQAAGRCNRHGKDKVRNVYIIRSSDEVLTNLPEIQIGAEKTERVLQEFEDDPGSLGDDLLSPKAMSRYFEYYFNDIGDKMHYPIPKLEQNLFDLMDRNRYYVDAYKKKHDCRPEAVNHYAIATAEKYFEAISTNATPVIVPYGEEGKELILDLNGAIEPGEMSQLLRKAQQYTVNIYDHELRALEKNGDVRPLLHGHVLALREPAYSDDFGVESKGEGAWEPMMI
>NZ_CP018620.1|WP_017690356.1|2086513_2087305_+|hypothetical-protein
MSRYYDGYGLDSTVTLLRIAYGLDNWREVVKLGETLYEESLRIYNLQMLTKEQDIVEIHTQRAIVYYIGYSRLMQGIAYQKLLEFDKARECVLQYSDFQWIKLTNQETLNEIEFYSDIAKINLMVLDLLEGNATKLDEYVAYIQKSKGEIMSGILTLLEANRLNNLPIQEFEYLFEKHRLISDTTIMTDIDVSYYLKFSFELAMYYSRNGNDSDAIDILLNCLAISPKINQNKIKYVAFFEKIREQATHAQINTYKSILEGML
>NZ_CP018620.1|WP_074093748.1|2084801_2085152_+|hypothetical-protein
MSDRIELASVVIGPFDDVQDFYIYQGYVMNESYIFFLDEGTLWLRHVHKVAHVDHLYINGDTGGIILAEHPQGNVKELIESIVDRLCGMDALTFLTDVLLWTPERVDMNLKLDRFH
>NZ_CP018620.1|WP_017690359.1|2084227_2084437_-|helix-turn-helix-domain-containing-protein
MALKPSYKPMEITLIKKDKNKTYLRTQLGISPSTLAKMSNGEFVALSVIARICEDLQCRIEEVVEFIEE
>NZ_CP018620.1|WP_074096761.1|2099666_2101403_-|methyl-accepting-chemotaxis-protein
MPFFIKNLVISFGSIMLIGVILITAAYQLQKNILVEQLHDQATVITQKWYDDLDTAKVAEAAKEKSYSGPVQLEMKTYLDSIHEFYPNIAQAYIFGSELEQGNGTSIIAIPTNLLEPFEEGNLPAGAMYPLPQNNVVVLEQMKKDGKPAFSDFYTDEYGTWTTLIYPINNADGSMYAALYFDVDASAVPKGLNKLLSYGLMFLIGFLILFMVLQFILLKRTLLPIRNLMKGIEEVSTGNLDVTIDTGRDDLGIINEKFNAMIHRFNTTIYKVQNASHHLSESSKQLLGISEKNNVNIQSISTNIREISTGLVSQDKATVENARAMTEMSTVVQTIASSSADVADEALSMEQRSSTGNVVMQQVIEQMRLISGAVQNTSNSIQSLENNSNQISNIVNVITEIAGQTNLLALNASIEAARAGEEGRGFAVVAGEVRNLAEQSQESAKQIRQLIEEIQRDIMQSSEAMQLGSKEVTKGLEVTQETGVFFENILTATNKVANQIQDISSSTEEISASTQEMSATADELSANVSKAASSSKQIEQSIDEQEASMAAIVSASDELSVVSEQLQELISFFKVRAE
>NZ_CP018620.1|WP_074093755.1|2101985_2102195_+|4-oxalocrotonate-tautomerase
MPEIMIRLYEGRTDEQKQEIVEVFTRELSRIIDREPDYISIEFNEIPWDENVPDNLRSMPSQKQGGKKT
>NZ_CP018620.1|WP_157116053.1|2102191_2103169_+|ABC-transporter-permease-subunit
MKPADILPPSRGAATLNSSGLGARLGETGRYLWRYRILYLLSVPGILYFFLFKYVPLFGSVIAFQNYNIFKGITGSDWVGLEHFQKMFSHYDFLRILNNTLLLGLYDLVIAFPVPILLAILLNEVRMIVFKRLLQTIVYMPHFLSWVVISGIFMGIFSMDAGVVNKALGFLGMQPMYFLGEDSYIRSILIGSGIWRDSGYGTIIFLAAIAGINPDLYEAAEVDGAGRLKQIWSITLPSLLPTIMILLLLHIGKFLDLGFERVFVFLNPLNLESGEILDTYIYKAGLLSQQYSYTTAIGLFKSVVGLMLILLGNFFSKKTTGESLY
>NZ_CP018620.1|WP_074093756.1|2103181_2104060_+|carbohydrate-ABC-transporter-permease
MRTPSVRYRIFRIGNLVFLTLLSLTMILPFINVLAQSLSSSEAIMGGKVSFWPVAFTWINYEYVFGDAAFWRAFAVSVGVTLVGTLVNLAATASLAYPVSRPEYKGRSLVVMFVLVTVVFSAPLIPNFILMKELHLVNNPLVLIVPGAINAFNFFVMRSFFSQLPGELIDAARIDGCGEFGIIWRIVIPLSKPAMASLGIFYAVGHWNAYSTALYYLNDPAWWPIQVTLKKLFESDDISVDPGSAVYSTLAHTSPEGIKMATIIIATLPIIIIYPFLQKHFVKGIMVGSVKS
>NZ_CP018620.1|WP_074093757.1|2104102_2105140_+|response-regulator
MFRILITDDEPMIRMGLAKMIKQAGVFDCEIRQAAHGEEALQVVKDFRPHILFTDIRMPTMDGIELCRRLSEQGSTMRIIVVSGYSDFEYARSCMDYGVKRYLLKPVGRQELHELLLKLLASEEDKPTVSLVPVRELNDWAMRLEEAIWELRQSDVTELLAAWSNRYPAYALMPEQTAELFQELLELIVARMNARGNGTMSTSSKIIVSASSKECFEALGNEIQTLMNRIKEKRSGKRKHPVEEAKAYLEKHLRREVSLDEIASKLGLNPSYFSQLFKQTTGQTFIQYRIRSKMELAKRMLEQPGNRITDISYEVGYADHPHFTKTFKKITGLTPSEYRSKLGIE
>NZ_CP018620.1|WP_074093758.1|2105136_2106975_+|sensor-histidine-kinase
MMKRSLSIRLFFHFAIVITLSLSAIGLFTYTYASTEMNDQLADNIAQTMRNTAYQTDLYLQNYDRATYSILSNGSVKHFLDMSSEDSYAYYEYSRQIKRNVFPPVFMLYPQIKFLYVIGENGRVVIDDNQNSAGIPDIDAAQQYKQLLAATPANGESTLLTRSIRSGQNANVITIARRIRGVSSYTPNGVLAMEVNVLELDNIWGELDLGQGGYQYVMDQNGNVIYTPGDEEAQTVMSSSTVDRLMHMEAGSLEQNTDGTKRLFISELSAYSGWRFVASVPLSELQRPIATIRSATLWVGAGTLLAALVVAYRIGASQVEPIRVLMNGMRQTEKGIWNKVEMKERRDEIGVLIRSYNLMVSRLSDMIESVYESELRRQKSEIELQQEALERHRAEFQALQLQINPHFLYNTLETIKCYAVIQDSEEITQMVESMAHMLRYSIQTNLEEITVANELKHVLAYLSIMKHRMDRELEVEVIIAPDLLLEKMVRLTLQPLVENVLQHAFPRGMEPGHFIRIDARRLEDRFLVIVQDNGMGMSEERLEKLRRRLELNRLAGEDTDDVYHRGGIGLMNVHRRIQLVFGETYGLMMESEEGMGTTITMALPADQHSKRI
>NZ_CP018620.1|WP_074093759.1|2107006_2107774_+|glucose-1-dehydrogenase
MNINLQNKIALVTGSSGGIGAAIAGALARCGAKVAVNGLHNMERAEEVVTAIRDAGGEAAAFQADVTDTDAIRAMIEDITLRFGGPIDLLVNNAGHLVERSPIETMSEELYSRIMDVNLKSAVFVSKAVIPGMRAAGGGRIINLTSVAAHNGGGPGAAIYAASKAAVMALTKGLAKELAPGGITVNALSPGFIGQTAFHATFTSAEGRSSAVSSIPLGREGTPDDVAGAALYLCSDLGSFITGETLEINGGMYMR
>NZ_CP018620.1|WP_074093760.1|2107808_2110208_+|DUF4962-domain-containing-protein
MEVKRKLAERSLYQPISGPFHVDYAPDEHTVLAENPPRFTWMAAQQEDENAYLLQVSASPSFQEAETMTFAPLPYNFFTPDQVFRPGDYYWRYALLVDHPVQQGSESEAHVSQGKQGSEAEGHTSQGEMSAWSEVRRFTVPVGLPETPLPSRAQRYVSTETSHPRLWLGERGLNALADGVASDSTYCGWDAFMAHSVEPWANREPIREPQPYPENKRVAALWRQMYIDCQEVLYAIRHLSVAGRVLRDERLLETAKTWLLHVAAWDTEGTTSRDYNDEAAFRVAAALAWGYDWLHDELNSEEQEVVKRSLLRRTEQVAQHVMVRSKIHHVPYDSHAVRSLSSVLVPCCMSLLYEEQQAAQWLDYAIDYYACLYSPWGGSDGGWAEGPMYWTTGMAYVTEAMNLLRNYAGIDFFRRPFFQRTGDFPFYVYPPDARRASFGDQSTLGDPVNLKTGYLVRQLAGVTGNRWYQWYFERVRQSDPGTEGAFYNYGWWDFNFDELVYRHDYPQLEEESPVDIEPLKWFRDVGWVAMHHRMDDPDEHIMLLLKSSRYGSISHSHADQNSFTLHAFGEPLAADTGYYIAHGSSFHREWRRQTRSKNNLLIGGAGQYAENNKVLNMAATGQIEEAYWRDGDGYVRAVATDAYASTVPHVKRVVREIHFLQSSYFVIVDHIDLEKPDSVQWLFHALHPLQLKGQSFHLNGTKAGLEGTFVYASSGELTLSQTDQFAEVDPAEYEGLDRHYHLSAETRPATSHTIVTLLVPYKIEEPKYVPYFIDDQDHGIHLYFTDNGVTKKIEVSKTY
>NZ_CP018620.1|WP_074093761.1|2110569_2112120_+|extracellular-solute-binding-protein
MKKWMVTGMALLLAATFIAGCSKGSGAESGENGGDGKTRFSMSLRTLAYTYVEKSPDINQDKWVKKLEELTNSDLKIVLVPHKEYEQKMVQMFATNDIPDVVQGDGGVNGKEMAGSVEAGVFQPLDELLQQYGQDLLKAVPKEAWDQVTHDGQIYAIPEYLSNPSRRATWIRKDLLDQTGLPVPTTVEETLEVLRAFKKLGVENPYMGREDFKYADTFFGAYDVQQFLSMMEQQGDQIVPKFMDNENMQQALTVYKTMYEEGLINKEFATINSTVFKNTILSGKAGMWSMNANELIQWEKQIKASVPDAKIEIIPSPVGPDGKGGYYLYGPVTRAYFINKDAADPASIIRFFNWMVSDEAEKFFTYGTEGETYTEDNGVISYTAPTDSAGVDEERYRQSFLWFVQDTTYNKGSLSLTEEGRKLMNIYDTILAKEGRDGINFDPRLEAFVQNPEIAPNSDTPPQVLLTHMIKMVYGKEPISDWPKVVEEWKSKGGDQAIEEATEKFKKDEGVSAPRR
>NZ_CP018620.1|WP_074093762.1|2112216_2116542_+|alpha/beta-hydrolase-fold-domain-containing-protein
MKDLFKTWTKRAVLVAISFILITGIAIPVHEVRAMEDDIPHSVIHAAQEANVLEPEGPELEIYTENFDDPDNFGSTGGIALKAPWRQDGAGGSKAKTSSSTTAPSQPNMIKIDGTDALALPLDLTGYGNIRLSYYTRASSYISGSVIIEWSKDGGISWTTLETFQLPTGTPDMKNKESNTLKSWTLGAEANNNSTVNIRFRTGDVMQANMYIDNVAIYGQAIPGITPAPSPVPPGEENTEFTPPQGVTLYEDVEIGTAGGRAIYSSIAVPETAAAEPMPVMVYIHGGGWNHGDRKQALNSICNYVLKRGYIGVSLDYRLTPEAPFPAQIQDVKLAIRYLRAHAAQYNLDPSRIGVWGSSAGGHLAALLGTTGDMVAGDPVVLDTGVTVEVPDLEGSGGWPEYSDKVQAVADWYGPADFTTTFANNYSSVTALLGGHRALDVPEQARLAMPGTYASPDDPPFWIRHGDADATIPYTDSVTFAEQLQSAGVPIVDVKIVPGQGHGFTGTASENANAEAWAFLDEHVKNRTVTEPVIFKSNSEDTSSGEGEDEEERPLIEKVIASKLPSDDAAIDSSKPDLNFNQATGSSTGLLSISSTSSTKKYVYFKFDMSGNEPEGDRYRLRIVAKKGTSNINTELSLYGLDATDWSESSLTWSNAPVQSLSEASLLGTFQVTADRNGSPAVYEVDVTDYVKSRPDAGKVAFLLADAGSTGVSVNVYTKEANGTSNPRPQLSVIALIEEGSDAQSPEWEQGAELEIRNWGTDFAELRWPAASDDTAVSAYRIYRDGVLLSEQGKQSFRDSGLAAGTSYTFQVRAIDEAGNVSTALSTEMTTLGVPVSSLPVAAVTASGSDGNLATNTLDNNSYTRWSVAGEGQWITFDLGQAQPVGYVGIGFYKGDIRKTFFEMESSVDGVQWTQIFNGESSGDTTEMQAFDIPDISARYVRITGRGNSDGSIYTSLSDVHLYAPFAGGGTPVALIPYIVPQPPEGTMPFIAPGLTETDGTLHTVHAPHAVTGRTIDVRDYGADPADKTSDDRPAIQAAMDEANVGDEVLLPDGVYNLLSGPDGSTNLMLKSGVNLRGESREGTVLKTSLNQVTGSAVLKASAQHSILVSNMTITSAWSGSYTTDHQSNNPSAGGPDSMIHIANYGEAPSYDITIDGVIVEKFKRMAIRIEHSRDVVVKHSTFRNATDLGPGGSGYGISIQGTAKTDRLGFDNDTLWNVVEESTFEGPYLRHGALIQFVAHNNVLRGNTFNGTKLDAIDLHGELEYLNEISGNVITDVLTGAGIGLGNTGGSAPSNHSKSGKGNYIHDNTIMNSRIGISMTMGTPDTLIEDNLIENTTMIAEAAGIKVLNGPGTVIRGNVIRNNTASGYWGVRLERDKGDAGAGNVGEGDPENVWIENNLIEGNTNGIGLFAGVSILMKANILNNVDEDYYKAAGVTVTEL

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Crispr_ID: NZ_CP018620_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018620_5

3167271-3167390

Orphan

Consensus_repeat	Method
AGCCCCGATACTAACGCCGAAGGCGAAAAAGCTCCCGTCCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018620_5

>merge|NZ_CP018620|5|3167271-3167390|CRISPRCasFinder
AGCCCCGATACTAACGCCGAAGGCGAAAAAGCTCCCGTCCTTCGCGAAGCGGAGCAGGGAGTCGTGGAGGGAAGCGAAGCCCCGATACTAACGCCGAAGGCGAAAAAGCTCCCGACCTTC

>NZ_CP018620|5|5|3167271-3167390|CRISPRCasFinder
AGCCCCGATACTAACGCCGAAGGCGAAAAAGCTCCCGTCCTTC	GCGAAGCGGAGCAGGGAGTCGTGGAGGGAAGCGA
AGCCCCGATACTAACGCCGAAGGCGAAAAAGCTCCCGACCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018620.1\|WP_074094459.1\|3159398_3160841_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
NZ_CP018620.1\|WP_074094464.1\|3167641_3168445_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP018620.1\|WP_074094465.1\|3168542_3169583_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074094470.1\|3173635_3173965_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_017689369.1\|3158936_3159179_+\|ferredoxin	unknown	unknown	gnl\|CDD\|224064
NZ_CP018620.1\|WP_017689367.1\|3160883_3161021_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074094463.1\|3166474_3167221_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP018620.1\|WP_074094471.1\|3174847_3175312_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP018620.1\|WP_017689366.1\|3161276_3162374_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP018620.1\|WP_074094467.1\|3170431_3171562_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP018620.1\|WP_074094466.1\|3169689_3170238_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP018620.1\|WP_074094468.1\|3171696_3172752_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226458
NZ_CP018620.1\|WP_074094469.1\|3172956_3173538_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP018620.1\|WP_074094460.1\|3163311_3163794_+\|DUF309-domain-containing-protein	unknown	unknown	gnl\|CDD\|377120
NZ_CP018620.1\|WP_036609636.1\|3162509_3163325_+\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP018620.1\|WP_074094461.1\|3164010_3164559_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP018620.1\|WP_074094462.1\|3164780_3166478_+\|NOL1/NOP2/sun-family-putative-RNA-methylase	unknown	unknown	gnl\|CDD\|223222
NZ_CP018620.1\|WP_017689352.1\|3174444_3174774_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
NZ_CP018620.1\|WP_036609613.1\|3174084_3174303_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018620.1\|WP_074094458.1\|3157518_3158820_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|179337

Protein	Function_ID	Function_description	E-value
NZ_CP018620.1\|WP_074094459.1\|3159398_3160841_+\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.02455e-31
NZ_CP018620.1\|WP_074094464.1\|3167641_3168445_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.34592e-76
NZ_CP018620.1\|WP_074094458.1\|3157518_3158820_+\|DNA-polymerase-IV	gnl\|CDD\|179337	PRK01810, PRK01810, DNA polymerase IV; Validated.	9.24166e-173
NZ_CP018620.1\|WP_017689369.1\|3158936_3159179_+\|ferredoxin	gnl\|CDD\|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	2.13742e-18
NZ_CP018620.1\|WP_074094463.1\|3166474_3167221_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.37241e-93
NZ_CP018620.1\|WP_074094471.1\|3174847_3175312_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	6.24732e-42
NZ_CP018620.1\|WP_017689366.1\|3161276_3162374_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP018620.1\|WP_074094467.1\|3170431_3171562_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.28652e-59
NZ_CP018620.1\|WP_074094469.1\|3172956_3173538_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	3.55729e-90
NZ_CP018620.1\|WP_074094468.1\|3171696_3172752_-\|hypothetical-protein	gnl\|CDD\|226458	COG3949, COG3949, Uncharacterized membrane protein [Function unknown].	1.71283e-59
NZ_CP018620.1\|WP_074094466.1\|3169689_3170238_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.000499043
NZ_CP018620.1\|WP_036609636.1\|3162509_3163325_+\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	6.23933e-87
NZ_CP018620.1\|WP_074094461.1\|3164010_3164559_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.59521e-11
NZ_CP018620.1\|WP_074094462.1\|3164780_3166478_+\|NOL1/NOP2/sun-family-putative-RNA-methylase	gnl\|CDD\|223222	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].	3.23947e-83
NZ_CP018620.1\|WP_017689352.1\|3174444_3174774_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	2.94497e-15
NZ_CP018620.1\|WP_074094460.1\|3163311_3163794_+\|DUF309-domain-containing-protein	gnl\|CDD\|377120	pfam03745, DUF309, Domain of unknown function (DUF309). This domain is found in eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.	2.41252e-24

>NZ_CP018620.1|WP_074094463.1|3166474_3167221_+|rRNA-pseudouridine-synthase
MNGKGKQTLRLDKILSHMGVGTRSELKKMVKQGRIHVDGKAVKDSGVQVNPEVNVIEADGERIVYREMIYLMLHKPPGVVSATEDNRDKTVLDLLRKEDRVFNPFPVGRLDKDTEGLLILTNDGPLAHDLLSPRKHVPKTYEARVLGNVDEADVQRFKAGIQLDDGYETLPAELTILGQEETEEGTISSISLIIHEGKFHQVKRMFQAVGKRVVYLKRVAMGELELASDLAIGSYRELTADELSLLRK
>NZ_CP018620.1|WP_074094462.1|3164780_3166478_+|NOL1/NOP2/sun-family-putative-RNA-methylase
MGVKLPLIFAERMKSLLGDEFEQFMKSYEQSPHAGLRVNTLKISMEQFDEIAPFDLRPIPWCETGFYVPHGVKPGLHPYYHAGLYYIQEPSAMAPVGLLQVEPGDRVLDLCAAPGGKTTQIAAKLQGKGVLVTNDIHAERTKALAKNVELYGVRNAVVLNESPERIANAFPHYFDKVLIDAPCSGEGMFRKDEDMVKSWEHHSVEKCVLMQRDILETAARLLAPGGTIVYSTCTFAPEENEAMIAEFLNVNRDFVVMDIPEETGFAPGRPEWVRQMMPEKAEETEAVLDQTRGTARLWPHLLEGEGHYVAVLQHRAGQGLQTDQPGVVKEGAMEYGQVVDVSRIEVEGKKDHSIAASSIAITKADRKKERLLRIESRESHDRQAGGGKNSGKQSKKGKDHGGRKSERGQGRGADSASIDPVAIYSQFMKEQLEIELTGETVCYGDRVYQSSVGAARLEGLKVIRPGWFMGTIKNGRFVPSHPLACALNASEARRSVNLSSADGEAVRYLKGETLNIEEERVVLKADTFAKGYVLVCVDGYAAGWGKWLDGVLKNEYPAGWRWTSV
>NZ_CP018620.1|WP_074094461.1|3164010_3164559_-|thioredoxin-family-protein
MKSKKKKKSAAILIFLGILIIMIAALVVVDQQSKKQMDSVENAYGIAASKLNPATRELLSDPNYQQIIVPTDLKAKIDNKDSFFVYFFASDCSHCRATTPQLMPLVDSEGIELPQFNLREFEAGWTDYNIEFTPTLVYYEAGVEKDRMVGGLKENGSDQGYTLDDYKQFFQKYKGSATPSAS
>NZ_CP018620.1|WP_074094460.1|3163311_3163794_+|DUF309-domain-containing-protein
MSIYEPLYVDYLIYFNRDQDYFECHEVLEELWLERNRDSLYKGLLQIAVGLYHFRNGNLRGGTMMLQSSLDLLEPYPATILGIDLGALVRDVQEIVKQLSQSDVQSVTYRDLSIRIVDEVLEQEISRRSLELKPNIPQRRSPTRGRIYEEKMKAMDQSKS
>NZ_CP018620.1|WP_036609636.1|3162509_3163325_+|GTP-pyrophosphokinase-family-protein
MDGRDWGTFLLPYEQAVEELKVKFKTMRAELKKREEYAPIEFVTGRVKKISSILEKSRRLNVSLDDVETGIEDIAGIRIMCQFVDDIRRVAEYIRGRKDLTVLIEKDYITNFKESGYRSFHMIIEYPVQTALGQKKVLAEIQIRTLAMNFWATIEHSLSYKFREGLPDEMRTRLKKTAEAAFILDNEMSAIRLQILEAQKAFEDDSNIVSRTLNIIHQLYFYHLVSEAIEAQKRFNDYWERHDMEGLKDLLDDVKKLLNNARKGENPDEHL
>NZ_CP018620.1|WP_017689366.1|3161276_3162374_+|quinone-dependent-dihydroorotate-dehydrogenase
MLYRSLAKPLLFKMDPEQAHHLIIGGLSGVGSIRPVPSGLRVMYGVRETSDLAVDMFGCHFPTPVGLAAGLDKNGQAVTGFSSIGFGFMEVGTVTPLAQPGNDQPRLFRLPPDEALVNRMGFNNLGAEAMAGELARLQDRRIPVAVNIGKNKATSNEEAHLDYSKCIQALYDYADLFVVNISSPNTPDLRNLQHGNELKELLAAVMNEMNVQHARAGGATKSVLVKIAPDVNDQELEYMVRTIADSGVAGIIATNTTISRTGLSHQHAKETGGLSGKPLRDRSTEIIRQIYRQTEGKLPIIGSGGIFTSEDAYEKIKAGASLVEIYTALIYEGPEVNRRIHAGLRELLRKDGYRHISEAVGAEHR
>NZ_CP018620.1|WP_017689367.1|3160883_3161021_-|hypothetical-protein
MAPKRKPPALQQKKEEVNRKAIAWTAASVGGLIIIIGALIIIANM
>NZ_CP018620.1|WP_074094459.1|3159398_3160841_+|L,D-transpeptidase
MQNTHLRTYVKKHPDNKMAWYLLGKEYLSEGQEAKANYCFQQAGEVYEAFERSKAPADIWVDYQEKLVEMSEQKEKKQRRRKMWLTLLMLLVLAGLPPADAPGFSREAADALSAALESTDDIEAPVEADKQVGTASIAPSNVFTAAAFGGGNHGEAALAAAWSGSGPKVETSAVLGMQTSDDWSLWKRNMPVKYIVQTNTSGKLTAQSYDAKQCNCEPPEITPKIKKMALAWTAKQEVAASLSSAIVAYRKKNDAWPKNVTQMAQPFPNNILGETAPGMTEMFPKLLALHQGKAKEGKNDSSGKENGSTTSNSSQGKNAAFADTLGGQPFLQEPLEIVIDKDKHKLALISGDTIVRMYDVGLGGDRTPEGSFVITDKVVNPNGRSNGEFGSRGMQLSNTNYAIHGTNEPDSIGLDESLGCVRMRTGDVEELFALAPQGTPVRIGEDVLPDLTLVPEAKQRYQHTLVPKQNNPNKTYHWLN
>NZ_CP018620.1|WP_017689369.1|3158936_3159179_+|ferredoxin
MSKYTWVEKDTCIACGACGATAPDIYDYDDEGLAEVIFDGDANHGVKAIPDDLFDDMQDACDGCPTDSIKVADEPFNKEG
>NZ_CP018620.1|WP_074094458.1|3157518_3158820_+|DNA-polymerase-IV
MSSDGNPPANVDQYYPAAGRVILHVDMNAFYCSVHEAEEPDLYRGKATAVAGSSELRKGVIVTCSYAARNRGISTGMVVHQAMKKCPDLIVIRPDFHLYRQYSRAFMQIAYSYTPQLEATSIDECYLDITGSRQFGNPMEIAESIQQRIKDELGLPCSIGIAPNKLLAKMASDLKKPNGISILRMRDVPRILWHRPCNEMFGIGKKTAEKLKKLGIETIGQLAKSDESMLTELFGINGAWLKNSANGINHSAVHAEREANKSIGHTTTLPADVSDMNEIHRVFLNISDQVTRRLRKHEMFSQGIQITIRTPDMKTITRSRLMEVPTEDATVIYREACKLFEKHWGSSKPVRMLGVTLQNLIPREESAVQMDLFEYEQKPKKDNLIRIMDQLRDKFGENAVVTAGMLGDDPSVLLRNHKVRGTSLQKDNLQSLD
>NZ_CP018620.1|WP_074094464.1|3167641_3168445_+|Cof-type-HAD-IIB-family-hydrolase
MTYKLIALDVDGTLLNDHHELTEWTQETLIQASRQGAEIVLCSGRGPANTIPFMEQMGLDGYVITHNGAVTAQVNTREVVHHFALDGQGLEPIISYCRANGVHFDINTAFGLYVDQPEGLGLQVREMYYNFMAEPLKLPKWVDMTEPLAKFTAFGPIEQMDAVLQEWSTWNLPYYMTRSGDFFIDLMHPEASKGAALKRLAESKGIMPSEIMAIGNYFNDITMLTFAGKGIAMDNSPDEVKAAADEVTLSNNEQGVAHAIQKYVLSV
>NZ_CP018620.1|WP_074094465.1|3168542_3169583_+|hypothetical-protein
MNYDVELVADLRTSGGEVQDVMVNGQYAGSLFLVYREGDRLSGSLQIEQESLPDDTEEFIVEKVHAYVRSLADALEAAYYEVLVSCGSLHTVLHMPESEKLWPSEEMNHDEGSYDDIGNSGSKVIPVSQAESFTYEDRDQVLEMEMVSAGRSISTYIFNDVEGQELAEASLKQYGADVQGEIHWYDEPEENQLEAAAELLVRELDEDIIDTITIRMWHQGNELETLEWVHRDFSEEFEDTDESDLDELEAAEETCYVMLKRKDREFRVYELFLQERGGLPVGTATIDTSHSDLTGYIDYEVPGTSIQRKSLVEVLMQELDKEMEFDTLHLTMLYRNQIIDEARIDG
>NZ_CP018620.1|WP_074094466.1|3169689_3170238_+|GNAT-family-N-acetyltransferase
MHSFRIISQYINDGLQAVQAKPEDTEDVMSLLVETAEWLQSQGSSQWNALLKGEDSHDTAGAIRRGDVFVFKKGTDVAGMVILLVQPSPWDIHLWGSKAHAEDGAIYLHRLAIRRKYAQSGLGRSILQWSSSGIHFEGKHTVRLDCGASNATLNAFYARNGYTFLGETDGYSTYEKSVELLS
>NZ_CP018620.1|WP_074094467.1|3170431_3171562_+|glycosyltransferase-family-4-protein
MKLLQALFFPPEQPGGVSSMIPYMQERFTTPRWEMDLFSLPKRIRNKGREEVQFETFDWTEYQDSPVVQKYIQTYRDYLWWTKLRIQKPYDLIHAHHPIAGLAMKTVFPDTPLIQTIHSSYERELILNGRIETDGPEHRFLLAIYGELEHQAERLLTVSDSFRRYLAPYVKEPDVIGVIPNGFDEKRFKPIPHDNAIPQLVTVCRLVPAKGLDILFKACAELKGRGHDYVLHIIGDGPIRPDLEELAQRLGIYNETIFYGYTLHPEEFMPFFDIFVLPSRAEAFGSVFAEAALSCLALVGTDVGGIPEQIENGSNGLLVPAEDPSALAEALEKVMLDPAYRYELARSACEKAKTHYSLGRSVNELKKMYLQFPSKA
>NZ_CP018620.1|WP_074094468.1|3171696_3172752_-|hypothetical-protein
MKQAFRVLQIAFTYIGTVVGAGFATGQEILQFFTQYGKWATITIGLSTMLFVWLGTKMMLIAHDTGSRSYEDLNKHLFGHKAGKWITWVTLLILIGVNSVMLAGAGSVFVEHLGLHYQTGLIVTLVGTYLLLGRGIQAILQMNSIVVPMMLLLSLLMITSTIHHPGASRFITLTTDSNPIQVWLSPLLYTSFNLVLAQAVLVPVGNQIRSRNVLKWGGVLGGIGVGFMLMAAHFAMSAQMPGIIQFEIPMGSIAFQLGWAVQSVYVSLIFMEIFSTFVADIYGMTLQLRQHIRVHPRFITLTIMLLCYSLSQFGFSSLLSILYPIFGSMALIWAAKLVLNRWGTFRKRNNI
>NZ_CP018620.1|WP_074094469.1|3172956_3173538_+|xanthine-phosphoribosyltransferase
MELLKQRILQEGVVISDQVLKLDGLLNHQIDPALTMEMGREFAARFRESGVTRVITVESSGIPVAFAAAYELGVPLVFARRKKTLLADPDAYCERVPSFTKGIVTDIMVSREFIHENDRILFIDDIIANGDAARGVIKIIERSGAELVGFGVVVEKSFQAGARTIREQGIPVEALVRIRSLNNGTVQFDDNEM
>NZ_CP018620.1|WP_074094470.1|3173635_3173965_+|hypothetical-protein
MGNQLATEQFFNDKLAESKVHFERALDCKHTEFDDLYPYMIEHPQFFWYKRYVAWSELLTIVGLCEELSFSWKEQFTPHQVEYLEERVMSAKVLDFWFEKNDSKEHAQR
>NZ_CP018620.1|WP_036609613.1|3174084_3174303_+|hypothetical-protein
MISDTELDALRLSGEKVRVVRDELESNDVKGIVVAWDGEQVLIRRQNRRVVKLDRGYSYQLFSEPRQSPLSE
>NZ_CP018620.1|WP_017689352.1|3174444_3174774_+|carboxymuconolactone-decarboxylase-family-protein
MTLMNDKVHAYKDQIGALSDVLPGVVKSYHEFTGECFQPGVIDAKTKQLIALGIGLFANNEVCTFYHVEEARAKGATDQEIMETVAVAGAVGGGHALSQGAMRVQKALH
>NZ_CP018620.1|WP_074094471.1|3174847_3175312_-|C40-family-peptidase
MKKLIISIFGAAVLFTSGATSTEASSINSVVNNMTGIPYKWGGTTVAGFDCSGFMRYLFNKYSIELPRTSQQQAKAGTPVAKSNVRTGDLVFFNTMGKGISHTGVYIGGGQFAHASSSKGVSITKLSNPYFNDRYVTARRVTGQFMYDKMLGKM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018620_3	3.9\|2086034\|35\|NZ_CP018620\|CRISPRCasFinder,CRT,PILER-CR	2086034-2086068	35	NZ_CP043762	Paenibacillus sp. 37 plasmid pART37, complete sequence	183722-183756	3	0.914
NZ_CP018620_3	3.8\|2085968\|34\|NZ_CP018620\|CRISPRCasFinder,CRT,PILER-CR	2085968-2086001	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	190454-190487	7	0.794
NZ_CP018620_3	3.8\|2085968\|34\|NZ_CP018620\|CRISPRCasFinder,CRT,PILER-CR	2085968-2086001	34	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	178737-178770	7	0.794
NZ_CP018620_3	3.11\|2086168\|31\|NZ_CP018620\|CRISPRCasFinder,CRT	2086168-2086198	31	NC_019774	Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequence	35020-35050	8	0.742
NZ_CP018620_4	4.27\|2097933\|34\|NZ_CP018620\|PILER-CR,CRISPRCasFinder,CRT	2097933-2097966	34	NZ_CP044329	Methylocystis rosea strain BRCS1 plasmid unnamed1, complete sequence	138974-139007	9	0.735
NZ_CP018620_3	3.8\|2085968\|34\|NZ_CP018620\|CRISPRCasFinder,CRT,PILER-CR	2085968-2086001	34	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	234977-235010	10	0.706
NZ_CP018620_4	4.15\|2097123\|34\|NZ_CP018620\|PILER-CR,CRISPRCasFinder,CRT	2097123-2097156	34	NC_010333	Caulobacter sp. K31 plasmid pCAUL02, complete sequence	140414-140447	10	0.706
NZ_CP018620_3	3.8\|2085968\|34\|NZ_CP018620\|CRISPRCasFinder,CRT,PILER-CR	2085968-2086001	34	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	546520-546553	11	0.676
NZ_CP018620_5	5.1\|3167314\|34\|NZ_CP018620\|CRISPRCasFinder	3167314-3167347	34	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2234285-2234318	11	0.676
NZ_CP018620_1	1.1\|2082288\|34\|NZ_CP018620\|PILER-CR,CRISPRCasFinder,CRT	2082288-2082321	34	AP017924	Ralstonia phage RP12 DNA, complete genome	226343-226376	12	0.647
NZ_CP018620_1	1.1\|2082288\|34\|NZ_CP018620\|PILER-CR,CRISPRCasFinder,CRT	2082288-2082321	34	AP017925	Ralstonia phage RP31 DNA, complete genome	223096-223129	12	0.647

1. spacer 3.9|2086034|35|NZ_CP018620|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 3, identity: 0.914

gctgtagtactcacgagtcttctgagcacctgtta-	CRISPR spacer
gctgtagtactcacgagtcttctgagcacc-gtcgc	Protospacer
****************************** **..

2. spacer 3.8|2085968|34|NZ_CP018620|CRISPRCasFinder,CRT,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.794

aaaccgcaggcgatattgcctgac--attgatttca	CRISPR spacer
aaaccgcaggcgatattggccgacgagacgattt--	Protospacer
****************** *.***  . .*****

3. spacer 3.8|2085968|34|NZ_CP018620|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 7, identity: 0.794

aaaccgcaggcgatattgcctgac--attgatttca	CRISPR spacer
aaaccgcaggcgatattggccgacgagacgattt--	Protospacer
****************** *.***  . .*****

4. spacer 3.11|2086168|31|NZ_CP018620|CRISPRCasFinder,CRT matches to NC_019774 (Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequence) position: , mismatch: 8, identity: 0.742

aatccaagcgcttttatgggt-----tatgtgttca	CRISPR spacer
tatccaagcgtttttatgggtgataataagt-----	Protospacer
 *********.**********     ** **

5. spacer 4.27|2097933|34|NZ_CP018620|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044329 (Methylocystis rosea strain BRCS1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ttaagtgcggcctttaatggcgtggcctgcgttt	CRISPR spacer
atcatgcctgcctttaatagcgtggccggcgttc	Protospacer
 * *   * *********.******** *****.

6. spacer 3.8|2085968|34|NZ_CP018620|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 10, identity: 0.706

aaaccgcaggcgatattgcctgacattgatttca	CRISPR spacer
aaaccgcaggcgatattggccgacgatacgacct	Protospacer
****************** *.***. *.   .*

7. spacer 4.15|2097123|34|NZ_CP018620|PILER-CR,CRISPRCasFinder,CRT matches to NC_010333 (Caulobacter sp. K31 plasmid pCAUL02, complete sequence) position: , mismatch: 10, identity: 0.706

ggatacgcctacggtaagctccggcaacctcgac	CRISPR spacer
cgcgcggttcacggtcagctccggcaatctcgac	Protospacer
 *    *...***** ***********.******

8. spacer 3.8|2085968|34|NZ_CP018620|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 11, identity: 0.676

aaaccgcaggcgatattgcctgacattgatttca	CRISPR spacer
tctcagcaggcgattttgcctgccattgaaagac	Protospacer
   * ********* ******* ******

9. spacer 5.1|3167314|34|NZ_CP018620|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 11, identity: 0.676

gcgaagcggagcagggagtcgtggagggaagcga	CRISPR spacer
tcgaagccgagcagggaggcgtggacattctggt	Protospacer
 ****** ********** ****** .     *

10. spacer 1.1|2082288|34|NZ_CP018620|PILER-CR,CRISPRCasFinder,CRT matches to AP017924 (Ralstonia phage RP12 DNA, complete genome) position: , mismatch: 12, identity: 0.647

ccccttacgccgcgctgaatagctgtgcgatgta	CRISPR spacer
tgtggaacgccgcgctgaaaagctgtccgagcgc	Protospacer
. .   ************* ****** ***

11. spacer 1.1|2082288|34|NZ_CP018620|PILER-CR,CRISPRCasFinder,CRT matches to AP017925 (Ralstonia phage RP31 DNA, complete genome) position: , mismatch: 12, identity: 0.647

ccccttacgccgcgctgaatagctgtgcgatgta	CRISPR spacer
tgtggaacgccgcgctgaaaagctgtccgagcgc	Protospacer
. .   ************* ****** ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

942906 : 980511

Bacillus_phage(18.52%)

portal,tail,transposase,holin,plate,capsid,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074093007.1\|942906_944211_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	1.2e-91	43.6
WP_074093008.1\|944347_944557_+	hypothetical protein	A0A1B1P7D4	Bacillus_phage	6.3e-08	45.3
WP_074093009.1\|944570_944993_-	hypothetical protein	NA	NA	NA	NA
WP_074093010.1\|945130_945400_+	hypothetical protein	NA	NA	NA	NA
WP_074093011.1\|945457_946345_+\|terminase	terminase	A0A1B1P7C9	Bacillus_phage	7.1e-24	37.5
WP_084174386.1\|946325_947660_+\|terminase	PBSX family phage terminase large subunit	E5DV50	Deep-sea_thermophilic_phage	3.2e-137	57.5
WP_074093012.1\|947672_949172_+\|portal	phage portal protein	H7BVB1	unidentified_phage	3.1e-96	44.2
WP_074093013.1\|949158_950055_+	hypothetical protein	A0A249XXB6	Clostridium_phage	1.3e-36	33.8
WP_074093014.1\|950191_951430_+\|terminase	terminase	A0A1B1P7E4	Bacillus_phage	1.8e-78	49.3
WP_074093015.1\|951472_952411_+\|capsid	phage major capsid protein	A0A1B1P7E3	Bacillus_phage	5.1e-105	62.4
WP_074093016.1\|952445_952721_+	hypothetical protein	NA	NA	NA	NA
WP_074093017.1\|952724_953108_+	DUF3199 family protein	A0A1B1P7D6	Bacillus_phage	1.1e-18	42.5
WP_074093018.1\|953104_953449_+	DUF3599 family protein	NA	NA	NA	NA
WP_074093019.1\|953445_953994_+	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	2.1e-42	49.1
WP_074093020.1\|953990_954434_+	hypothetical protein	NA	NA	NA	NA
WP_157116274.1\|954447_954648_+	hypothetical protein	NA	NA	NA	NA
WP_074093022.1\|954647_955973_+\|tail	phage tail sheath protein	S5MUG6	Brevibacillus_phage	4.2e-121	53.2
WP_074093023.1\|955976_956444_+\|tail	phage tail tube protein	A0A0K2CNG3	Brevibacillus_phage	1.2e-51	63.2
WP_074093024.1\|956476_956905_+\|portal	phage portal protein	A0A0A8WJT4	Clostridium_phage	2.5e-11	30.5
WP_074093025.1\|957115_960034_+	hypothetical protein	NA	NA	NA	NA
WP_074093026.1\|960030_960684_+	LysM peptidoglycan-binding domain-containing protein	A0A2H4J2N2	uncultured_Caudovirales_phage	2.1e-33	40.8
WP_074093027.1\|960680_961847_+	hypothetical protein	H7BV96	unidentified_phage	4.8e-52	34.7
WP_074093028.1\|961851_962250_+	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	2.5e-05	31.0
WP_074093029.1\|962233_962650_+	DUF2634 domain-containing protein	A0A2H4J6K5	uncultured_Caudovirales_phage	7.7e-13	35.7
WP_074096677.1\|962687_963728_+\|plate	baseplate J/gp47 family protein	S5MUH6	Brevibacillus_phage	2.2e-80	44.5
WP_084174388.1\|963771_964302_+	DUF2313 domain-containing protein	S5MA71	Brevibacillus_phage	3.2e-32	45.8
WP_074093031.1\|964301_964583_+	ketopantoate hydroxymethyltransferase	NA	NA	NA	NA
WP_074093032.1\|964582_965284_+	hypothetical protein	NA	NA	NA	NA
WP_074093033.1\|965283_965904_+	hypothetical protein	NA	NA	NA	NA
WP_074093034.1\|965905_966454_+	hypothetical protein	NA	NA	NA	NA
WP_157116018.1\|966555_966999_+\|holin	holin	D0R7H7	Paenibacillus_phage	6.9e-44	70.7
WP_084174389.1\|966985_968335_+	peptidoglycan DD-metalloendopeptidase family protein	D0R7H8	Paenibacillus_phage	5.7e-57	50.9
WP_074093035.1\|968479_970069_+	hypothetical protein	A0A1S5SA14	Streptococcus_phage	3.4e-69	37.9
WP_074096679.1\|970359_971217_-	NYN domain-containing protein	A0A0K2CNZ2	Brevibacillus_phage	4.0e-88	55.5
WP_074093036.1\|971535_971922_-	hypothetical protein	A0A0A7S1E5	Clostridium_phage	7.4e-10	36.9
WP_074093037.1\|971989_972184_-	addiction module toxin, HicA family	A0A1L2JY37	Aeribacillus_phage	1.5e-11	46.8
WP_084174391.1\|972444_973092_+	hypothetical protein	NA	NA	NA	NA
WP_074093038.1\|973272_973569_+	DUF3139 domain-containing protein	NA	NA	NA	NA
WP_074093039.1\|973693_973888_+	hypothetical protein	NA	NA	NA	NA
WP_074093041.1\|974206_974542_+	YolD-like family protein	NA	NA	NA	NA
WP_074093042.1\|974864_975092_+	hypothetical protein	NA	NA	NA	NA
WP_084174392.1\|975084_975675_+	cell filamentation protein Fic	NA	NA	NA	NA
WP_074093044.1\|975863_976184_+\|transposase	transposase	NA	NA	NA	NA
WP_074093045.1\|976180_977044_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.7e-28	35.6
WP_074093046.1\|977343_978267_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_074093047.1\|978294_979203_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_157116276.1\|979478_979718_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157116019.1\|979927_980077_+	hypothetical protein	NA	NA	NA	NA
WP_157116020.1\|980073_980511_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	6.2e-29	42.1

DBSCAN-SWA_2

1622078 : 1630845

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017690695.1\|1622078_1622324_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	9.7e-08	39.0
WP_036606071.1\|1622328_1623018_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_074093477.1\|1622995_1625239_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.1e-166	43.3
WP_036606069.1\|1625223_1626702_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.7e-52	32.9
WP_074093479.1\|1627344_1628385_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.1e-67	44.7
WP_074093481.1\|1628384_1629002_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.2e-24	35.9
WP_074093482.1\|1629297_1630845_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.0e-73	51.0

DBSCAN-SWA_3

2028352 : 2034831

Caulobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036606259.1\|2028352_2028799_+	tellurite resistance TerB family protein	A0A1Y0T181	Sinorhizobium_phage	7.5e-06	25.9
WP_036672556.1\|2028834_2029428_+	TerD family protein	K4JRX3	Caulobacter_phage	3.1e-23	32.7
WP_062837432.1\|2029518_2030094_+	TerD family protein	K4JRX3	Caulobacter_phage	5.3e-28	37.9
WP_036606267.1\|2030187_2030769_+	TerD family protein	K4JRX3	Caulobacter_phage	4.1e-28	37.0
WP_074093717.1\|2030799_2032056_+	tellurium resistance protein TerA	W8EDB4	Pseudomonas_phage	2.7e-08	26.7
WP_084174872.1\|2032247_2033468_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_074093719.1\|2033397_2034831_+	phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	8.8e-08	26.0

DBSCAN-SWA_4

2279756 : 2333003

Bacillus_phage(26.67%)

portal,tail,tRNA,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074093860.1\|2279756_2280245_+\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_074093861.1\|2280368_2281643_-	MFS transporter	NA	NA	NA	NA
WP_074093862.1\|2281896_2282109_+	hypothetical protein	NA	NA	NA	NA
WP_036668798.1\|2282435_2282927_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-50	63.0
WP_074093863.1\|2283074_2283848_-	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	2.8e-56	44.6
WP_036611465.1\|2283840_2284332_-	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	1.1e-55	68.0
WP_074096774.1\|2284328_2285009_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.5e-61	54.7
WP_036611462.1\|2285538_2286243_-	hypothetical protein	NA	NA	NA	NA
WP_074093864.1\|2286261_2286717_-	hypothetical protein	NA	NA	NA	NA
WP_167544395.1\|2287047_2287215_+	hypothetical protein	NA	NA	NA	NA
WP_017690195.1\|2287422_2288127_+	hypothetical protein	NA	NA	NA	NA
WP_074096775.1\|2288278_2289250_+	WYL domain-containing protein	NA	NA	NA	NA
WP_017690193.1\|2289308_2289980_-	exonuclease domain-containing protein	NA	NA	NA	NA
WP_074093865.1\|2290468_2292253_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_074093866.1\|2292853_2294653_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_017690190.1\|2294825_2295242_-	ImmA/IrrE family metallo-endopeptidase	A0A0S2SXM3	Bacillus_phage	7.9e-18	38.9
WP_082219000.1\|2295284_2295728_-	helix-turn-helix domain-containing protein	S6C481	Thermus_phage	2.2e-18	41.1
WP_017690187.1\|2296477_2296960_+	ArpU family transcriptional regulator	A0A0C5AN03	Paenibacillus_phage	2.0e-44	64.4
WP_074093867.1\|2297060_2298728_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_074093868.1\|2298746_2299481_+	response regulator transcription factor	NA	NA	NA	NA
WP_036611439.1\|2299669_2300245_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_074093869.1\|2300292_2300751_+	VOC family protein	NA	NA	NA	NA
WP_074093870.1\|2300747_2301383_+	hypothetical protein	NA	NA	NA	NA
WP_084174476.1\|2301513_2302464_+	hypothetical protein	NA	NA	NA	NA
WP_074093872.1\|2303380_2305231_+	DUF4127 family protein	NA	NA	NA	NA
WP_074093873.1\|2305235_2305580_-	DUF3139 domain-containing protein	NA	NA	NA	NA
WP_157116063.1\|2306013_2306937_+	hypothetical protein	NA	NA	NA	NA
WP_036611428.1\|2307330_2307537_+	hypothetical protein	NA	NA	NA	NA
WP_074093874.1\|2307536_2309000_+\|tail	phage tail sheath protein	A0A0N7AEC6	Bacillus_phage	4.2e-74	35.5
WP_036611426.1\|2309222_2309630_+\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	1.2e-39	56.5
WP_017690174.1\|2309807_2310242_+	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	4.7e-21	41.3
WP_074093875.1\|2310424_2312098_+	hypothetical protein	NA	NA	NA	NA
WP_074096777.1\|2312154_2312787_+	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	1.3e-35	46.2
WP_074093876.1\|2312783_2313773_+\|portal	phage portal protein	A0A0N6W8H4	Bacillus_phage	4.7e-77	45.8
WP_074093877.1\|2313765_2314176_+	hypothetical protein	A0A0N7ACD3	Bacillus_phage	6.6e-09	32.3
WP_074093878.1\|2314168_2314624_+	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	9.0e-23	43.9
WP_074093879.1\|2314628_2315768_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	2.1e-44	36.9
WP_074093880.1\|2315974_2316565_+	YmfQ family protein	A0A0A8WI80	Clostridium_phage	7.1e-20	32.0
WP_074093881.1\|2316564_2317653_+	hypothetical protein	NA	NA	NA	NA
WP_074093882.1\|2317728_2318160_+	hypothetical protein	NA	NA	NA	NA
WP_074093883.1\|2318209_2318419_+	hypothetical protein	NA	NA	NA	NA
WP_074093884.1\|2318418_2319735_+\|tail	phage tail sheath protein	S5MNC1	Brevibacillus_phage	6.9e-124	51.4
WP_074093885.1\|2319736_2320195_+\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	1.4e-52	65.6
WP_036611390.1\|2320366_2320789_+\|portal	phage portal protein	X5JAB6	Clostridium_phage	5.8e-24	39.7
WP_074093886.1\|2320788_2320968_+	hypothetical protein	NA	NA	NA	NA
WP_074093887.1\|2320990_2323084_+	hypothetical protein	A0A0K2CP22	Brevibacillus_phage	7.9e-74	30.2
WP_074093888.1\|2323084_2323780_+	LysM peptidoglycan-binding domain-containing protein	A0A0K2CNM3	Brevibacillus_phage	2.0e-50	46.9
WP_074093889.1\|2323793_2324804_+	hypothetical protein	S5MNC9	Brevibacillus_phage	1.4e-95	51.6
WP_074096778.1\|2324813_2325068_+	DUF2577 family protein	S6C459	Thermus_phage	1.2e-13	50.0
WP_074093890.1\|2325064_2325478_+	DUF2634 domain-containing protein	S5MTX3	Brevibacillus_phage	1.1e-19	45.9
WP_074093891.1\|2325470_2326529_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	2.8e-83	49.0
WP_074093892.1\|2326525_2327071_+	YmfQ family protein	A0A0A7RUW8	Clostridium_phage	1.9e-19	31.3
WP_074093893.1\|2327071_2329402_+	hypothetical protein	R4JDZ8	Bacillus_phage	7.3e-28	32.1
WP_074093894.1\|2329401_2330019_+	hypothetical protein	NA	NA	NA	NA
WP_074093895.1\|2330019_2330430_+	hypothetical protein	NA	NA	NA	NA
WP_074093896.1\|2330473_2330914_+	hypothetical protein	S6C455	Thermus_phage	5.4e-17	42.5
WP_074093897.1\|2331178_2331676_+\|holin	phage holin family protein	D0R7H7	Paenibacillus_phage	4.4e-47	68.3
WP_074093898.1\|2332055_2333003_+	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	3.3e-59	51.3

DBSCAN-SWA_5

5224336 : 5234924

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074095665.1\|5224336_5225530_-	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	7.4e-08	31.8
WP_074095666.1\|5225660_5226143_-	sporulation protein YtfJ	NA	NA	NA	NA
WP_074095667.1\|5226291_5227023_-	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_074095668.1\|5227212_5227869_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.5e-12	30.1
WP_074095669.1\|5227837_5228638_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.4e-07	34.1
WP_074095670.1\|5228742_5229210_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.4e-42	55.6
WP_074095671.1\|5229312_5230545_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.9e-118	52.7
WP_074095672.1\|5230577_5231246_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-37	40.2
WP_047843583.1\|5231307_5232411_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	7.4e-63	37.1
WP_074095673.1\|5233070_5234396_-	hypothetical protein	NA	NA	NA	NA
WP_017687646.1\|5234492_5234924_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.1e-21	43.9

DBSCAN-SWA_6

6225139 : 6236000

Emiliania_huxleyi_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074096223.1\|6225139_6226408_-	tetratricopeptide repeat protein	V5LQX0	Emiliania_huxleyi_virus	8.1e-05	83.3
WP_074096224.1\|6226956_6227403_-	hypothetical protein	NA	NA	NA	NA
WP_036616900.1\|6227523_6228030_-	type 1 glutamine amidotransferase	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	8.7e-19	37.6
WP_156946186.1\|6228297_6228465_-	hypothetical protein	NA	NA	NA	NA
WP_074096225.1\|6228541_6229003_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_074096226.1\|6229015_6231193_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	J9Q7H7	Salmonella_phage	1.5e-11	40.7
WP_074096227.1\|6231566_6232883_+	uracil permease	Q9KX94	Enterobacteria_phage	1.4e-63	38.0
WP_047844084.1\|6233038_6233554_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.3e-29	42.9
WP_074096228.1\|6233591_6236000_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	5.7e-84	32.6

DBSCAN-SWA_7

6381187 : 6386531

Catovirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074096303.1\|6381187_6381904_-	glycosyltransferase	A0A1V0SAH6	Catovirus	3.2e-06	28.4
WP_074096304.1\|6382000_6382717_-	glycosyltransferase	A0A1V0SAH6	Catovirus	2.9e-07	29.3
WP_036605843.1\|6382713_6383655_-	NAD-dependent epimerase/dehydratase family protein	A0A1D7XFE8	Escherichia_phage	9.6e-11	23.7
WP_036605842.1\|6383636_6384464_-	SDR family oxidoreductase	A0A1V0SAG7	Catovirus	7.6e-28	34.9
WP_017692517.1\|6384460_6385447_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	3.9e-39	33.1
WP_074097022.1\|6385439_6386531_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A2P1ELS7	Moumouvirus	1.3e-91	45.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018621

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018620

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection