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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010241 Escherichia coli strain C7 plasmid A, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP010240 Escherichia coli strain C7 chromosome, complete genome 5 crisprs WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG 0 5 18 0

Results visualization

1. NZ_CP010240
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010240_1 790920-791035 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010240_2 813949-814081 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010240_3 2307177-2307294 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010240_4 2763189-2763278 Unclear I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010240_5 2788997-2789391 TypeI-E I-E
6 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010240_2 2.1|813966|42|NZ_CP010240|PILER-CR 813966-814007 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 0 1.0
NZ_CP010240_2 2.2|814025|40|NZ_CP010240|PILER-CR 814025-814064 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 1 0.975
NZ_CP010240_5 5.2|2789087|32|NZ_CP010240|PILER-CR,CRISPRCasFinder,CRT 2789087-2789118 32 NC_028662 Mycobacterium phage Phlei, complete genome 44891-44922 5 0.844
NZ_CP010240_5 5.6|2789331|32|NZ_CP010240|PILER-CR,CRISPRCasFinder,CRT 2789331-2789362 32 NZ_CP050442 Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence 41503-41534 6 0.812
NZ_CP010240_5 5.1|2789026|32|NZ_CP010240|PILER-CR,CRISPRCasFinder,CRT 2789026-2789057 32 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 903982-904013 10 0.688
NZ_CP010240_5 5.1|2789026|32|NZ_CP010240|PILER-CR,CRISPRCasFinder,CRT 2789026-2789057 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1467285-1467316 11 0.656

1. spacer 2.1|813966|42|NZ_CP010240|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

2. spacer 2.2|814025|40|NZ_CP010240|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

3. spacer 5.2|2789087|32|NZ_CP010240|PILER-CR,CRISPRCasFinder,CRT matches to NC_028662 (Mycobacterium phage Phlei, complete genome) position: , mismatch: 5, identity: 0.844

acgaccaaatgatctacgcgtattgccacctc-	CRISPR spacer
acgaccaaacgctctacgcgta-tgcgagctct	Protospacer
*********.* ********** *** * *** 

4. spacer 5.6|2789331|32|NZ_CP010240|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

cggctatggaatttatggagaagtttggtttt	CRISPR spacer
ctcctatggaatttatgcagaagtttagtaat	Protospacer
*  ************** ********.**  *

5. spacer 5.1|2789026|32|NZ_CP010240|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
gcgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
*. **** ***************.**..   .

6. spacer 5.1|2789026|32|NZ_CP010240|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
ccgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
 . **** ***************.**..   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 113 : 17877 33 Enterobacteria_phage(51.72%) integrase,protease,transposase attL 12897:12911|attR 27335:27349
DBSCAN-SWA_2 234280 : 299057 68 Enterobacteria_phage(57.69%) tRNA,transposase,tail,head,lysis,terminase,protease,capsid,integrase,portal attL 242761:242807|attR 288851:288897
DBSCAN-SWA_3 1078910 : 1136495 55 Vibrio_phage(15.38%) integrase,tRNA,protease,transposase attL 1104291:1104305|attR 1135797:1135811
DBSCAN-SWA_4 2352059 : 2420311 60 Klebsiella_phage(25.0%) integrase,protease,transposase attL 2340312:2340328|attR 2394974:2394990
DBSCAN-SWA_5 2805746 : 2812886 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_6 2890829 : 2972844 88 Enterobacteria_phage(38.33%) transposase,tail,lysis,protease,integrase,portal attL 2884039:2884098|attR 2972851:2972999
DBSCAN-SWA_7 3060803 : 3126734 74 Escherichia_phage(28.3%) tRNA,transposase,tail,head,terminase,capsid,integrase,holin attL 3055897:3055911|attR 3062378:3062392
DBSCAN-SWA_8 3332650 : 3386819 71 Escherichia_phage(79.37%) tRNA,transposase,tail,terminase,integrase,plate,holin attL 3332284:3332299|attR 3366995:3367010
DBSCAN-SWA_9 3594006 : 3635603 55 Enterobacteria_phage(44.74%) transposase,tail,lysis,protease,portal NA
DBSCAN-SWA_10 3657299 : 3674480 26 uncultured_Caudovirales_phage(83.33%) tail,head,terminase,protease,capsid,integrase,portal attL 3659464:3659485|attR 3674506:3674527
DBSCAN-SWA_11 3793234 : 3839209 55 Enterobacteria_phage(83.33%) tRNA,tail,head,terminase,capsid,integrase,plate,holin attL 3795641:3795661|attR 3831854:3831874
DBSCAN-SWA_12 3989462 : 4057053 78 Enterobacteria_phage(69.57%) tRNA,tail,head,terminase,capsid,integrase,plate,holin attL 4020372:4020431|attR 4057996:4058119
DBSCAN-SWA_13 4110080 : 4144392 38 Enterobacteria_phage(38.24%) tail,head,terminase,capsid,holin NA
DBSCAN-SWA_14 4236919 : 4351667 111 Escherichia_phage(36.84%) tRNA,transposase,tail,lysis,head,terminase,capsid,integrase,plate,holin,portal attL 4292913:4292940|attR 4324390:4324417
DBSCAN-SWA_15 4364178 : 4373620 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_16 4573195 : 4651743 89 Shigella_phage(48.21%) tRNA,transposase,tail,head,terminase,protease,capsid,integrase,plate,holin,portal attL 4603011:4603027|attR 4654208:4654224
DBSCAN-SWA_17 4889462 : 5051511 185 Enterobacteria_phage(45.83%) tRNA,transposase,tail,lysis,head,terminase,protease,capsid,integrase,holin,portal attL 4976247:4976264|attR 5042721:5042738
DBSCAN-SWA_18 5276353 : 5308896 35 Enterobacteria_phage(48.48%) tail,head,lysis,terminase,capsid,holin,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage