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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP018185 Bacillus subtilis strain KH2 plasmid, complete sequence 1 crisprs NA 0 1 0 0
NZ_CP018184 Bacillus subtilis strain KH2, complete genome 2 crisprs DEDDh,WYL,csa3,DinG,cas3 0 1 12 0

Results visualization

1. NZ_CP018185
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018185_1 60700-60868 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP018185 Bacillus subtilis strain KH2 plasmid, complete sequence 60755-60813 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP017764 Bacillus subtilis strain 29R7-12 plasmid unnamed1, complete sequence 37952-38010 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP032868 Bacillus subtilis subsp. subtilis strain N4-2 plasmid unnamed1, complete sequence 33414-33472 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP032864 Bacillus subtilis subsp. subtilis strain N2-2 plasmid unnamed1, complete sequence 47417-47475 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP032866 Bacillus subtilis subsp. subtilis strain N3-1 plasmid unnamed1, complete sequence 31651-31709 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP021893 Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence 5175-5233 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP021893 Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence 71103-71161 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP041370 Bacillus sp. M4U3P1 plasmid unnamed1, complete sequence 57654-57712 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP020024 Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence 20251-20309 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP020024 Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence 84850-84908 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP032862 Bacillus subtilis subsp. subtilis strain N1-1 plasmid unnamed1, complete sequence 1870-1928 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NC_015148 Bacillus subtilis subsp. natto plasmid pLS20 DNA, complete sequence, strain: IFO 3335 60682-60740 0 1.0
NZ_CP018185_1 1.1|60755|59|NZ_CP018185|CRISPRCasFinder 60755-60813 59 NZ_CP014473 Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed2, complete sequence 60682-60740 0 1.0

1. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP018185 (Bacillus subtilis strain KH2 plasmid, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

2. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP017764 (Bacillus subtilis strain 29R7-12 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

3. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP032868 (Bacillus subtilis subsp. subtilis strain N4-2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

4. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP032864 (Bacillus subtilis subsp. subtilis strain N2-2 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

5. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP032866 (Bacillus subtilis subsp. subtilis strain N3-1 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

6. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP021893 (Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

7. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP021893 (Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

8. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP041370 (Bacillus sp. M4U3P1 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

9. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP020024 (Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

10. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP020024 (Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

11. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP032862 (Bacillus subtilis subsp. subtilis strain N1-1 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

12. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NC_015148 (Bacillus subtilis subsp. natto plasmid pLS20 DNA, complete sequence, strain: IFO 3335) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

13. spacer 1.1|60755|59|NZ_CP018185|CRISPRCasFinder matches to NZ_CP014473 (Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	CRISPR spacer
cgctcctggatgcctggcatcgatctctttcttcagctgccacatcacgacaagtcgca	Protospacer
***********************************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP018184
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018184_1 178349-178454 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018184_2 2211088-2211195 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018184_2 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder 2211112-2211171 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
NZ_CP018184_2 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder 2211112-2211171 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
NZ_CP018184_2 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder 2211112-2211171 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
NZ_CP018184_2 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder 2211112-2211171 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
NZ_CP018184_2 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder 2211112-2211171 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
NZ_CP018184_2 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder 2211112-2211171 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
NZ_CP018184_2 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder 2211112-2211171 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
NZ_CP018184_2 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder 2211112-2211171 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
NZ_CP018184_2 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder 2211112-2211171 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|2211112|60|NZ_CP018184|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 453821 : 502606 56 Planktothrix_phage(22.22%) coat,transposase,tRNA NA
DBSCAN-SWA_2 585545 : 620425 45 uncultured_Caudovirales_phage(32.35%) terminase,holin,portal,transposase,plate NA
DBSCAN-SWA_3 1058225 : 1155331 108 Bacillus_phage(56.6%) tail,integrase,terminase,coat,tRNA,capsid,holin,protease,portal,transposase,plate,head attL 1060189:1060248|attR 1124967:1125132
DBSCAN-SWA_4 1226705 : 1262702 35 Bacillus_phage(41.67%) transposase,integrase attL 1226612:1226671|attR 1253177:1254462
DBSCAN-SWA_5 1266369 : 1277059 10 Bacillus_phage(75.0%) transposase,holin NA
DBSCAN-SWA_6 1489500 : 1495595 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_7 1868597 : 1922066 56 uncultured_Mediterranean_phage(12.5%) coat,protease,tRNA NA
DBSCAN-SWA_8 2520064 : 2575886 69 Bacillus_phage(69.05%) terminase,capsid,holin,protease,portal,tail,head NA
DBSCAN-SWA_9 2650218 : 2686662 48 Bacillus_phage(34.62%) integrase,terminase,portal,tail,plate attL 2650027:2650080|attR 2686856:2686909
DBSCAN-SWA_10 2982516 : 3057855 74 Bacillus_phage(26.67%) coat,protease,bacteriocin,tRNA NA
DBSCAN-SWA_11 3226383 : 3324126 89 Bacillus_phage(23.81%) coat,transposase,holin,protease NA
DBSCAN-SWA_12 4056285 : 4128782 60 Synechococcus_phage(15.79%) coat,transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage