CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018155	Tenacibaculum todarodis strain LPB0136 chromosome, complete genome	1 crisprs	cas3,DEDDh,PrimPol,WYL,RT	0	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018155_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018155_1

503793-504160

Orphan

Consensus_repeat	Method
AANANTTCCAGAACCANCAA	CRT

6 spacers

The CRISPR arrays of NZ_CP018155_1

>merge|NZ_CP018155|1|503793-504160|CRT
AACATCTCCAGAACCAACAGAGCTTGTGTTAATTTTAGAAGGTTTTCCTTTGTAATAAACACTTCCAGAACCAACAATACTCGCTTTAATTTTATTGCTAACATTTGTTTTTACACTACCAGAACCTGCAATACTTGCTTTTAAATCTTCAGTTTCTAACTCGTAAGCTTTAATACTTCCAGAACCTGCAATAGAACATTTTAAAGTAGTTGATTTACCAGATAATTTAATATCTCCAGAACCACCAATAGATGCGCTAAGAGTTGTTGCTTCTACTTCAGTTACAATATTTCCAGAACCACCAATTGCTACTGAAACACTGTTAGATTTAATCGGTTTTTTAACAAAAACATTACCAGAACCACCTA

>NZ_CP018155|1|1|503793-504160|CRT
AACATCTCCAGAACCAACAG	AGCTTGTGTTAATTTTAGAAGGTTTTCCTTTGTAATA
AACACTTCCAGAACCAACAA	TACTCGCTTTAATTTTATTGCTAACATTTGTTTT
TACACTACCAGAACCTGCAA	TACTTGCTTTTAAATCTTCAGTTTCTAACTCGTAAGCTTT
AATACTTCCAGAACCTGCAA	TAGAACATTTTAAAGTAGTTGATTTACCAGATAATTT
AATATCTCCAGAACCACCAA	TAGATGCGCTAAGAGTTGTTGCTTCTACTTCAGTTAC
AATATTTCCAGAACCACCAA	TTGCTACTGAAACACTGTTAGATTTAATCGGTTTTTTAACAAA
AACATTACCAGAACCACCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018155.1\|WP_072554595.1\|513094_513703_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP018155.1\|WP_072554586.1\|504525_505614_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018155.1\|WP_072554578.1\|496115_496697_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018155.1\|WP_072554576.1\|495309_495711_+\|group-III-truncated-hemoglobin	unknown	unknown	gnl\|CDD\|381257
NZ_CP018155.1\|WP_158009648.1\|497596_498793_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP018155.1\|WP_158009586.1\|496709_497459_+\|toxin-antitoxin-system-YwqK-family-antitoxin	unknown	unknown	gnl\|CDD\|225405
NZ_CP018155.1\|WP_072554581.1\|498847_499783_+\|2-nitropropane-dioxygenase	unknown	unknown	gnl\|CDD\|132195
NZ_CP018155.1\|WP_072554588.1\|506114_506681_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_CP018155.1\|WP_072554584.1\|501761_503603_-\|cystathionine-beta-synthase	unknown	unknown	gnl\|CDD\|99738
NZ_CP018155.1\|WP_072554589.1\|506887_507691_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP018155.1\|WP_072554587.1\|505597_506125_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018155.1\|WP_072554575.1\|494646_495243_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP018155.1\|WP_072554582.1\|499798_500773_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|236561
NZ_CP018155.1\|WP_072554590.1\|507823_508477_+\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947
NZ_CP018155.1\|WP_072554591.1\|508767_510453_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020
NZ_CP018155.1\|WP_072554583.1\|500784_501735_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238257
NZ_CP018155.1\|WP_072554577.1\|495697_496042_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018155.1\|WP_072554593.1\|510965_512123_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225256
NZ_CP018155.1\|WP_072554592.1\|510452_510869_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225543
NZ_CP018155.1\|WP_072554594.1\|512245_513085_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|181386

Protein	Function_ID	Function_description	E-value
NZ_CP018155.1\|WP_072554595.1\|513094_513703_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	4.60587e-69
NZ_CP018155.1\|WP_072554584.1\|501761_503603_-\|cystathionine-beta-synthase	gnl\|CDD\|99738	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.	0.000378166
NZ_CP018155.1\|WP_072554576.1\|495309_495711_+\|group-III-truncated-hemoglobin	gnl\|CDD\|381257	cd08916, TrHb3_P, Truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 3 (P). The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. They are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb3s include Campylobacter jejuni Ctb, encoded by Cj0465c, which may play a role in moderating O2 flux within C. jejuni.	1.3275e-47
NZ_CP018155.1\|WP_158009648.1\|497596_498793_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP018155.1\|WP_158009586.1\|496709_497459_+\|toxin-antitoxin-system-YwqK-family-antitoxin	gnl\|CDD\|225405	COG2849, COG2849, Uncharacterized protein conserved in bacteria [Function unknown].	2.55194e-22
NZ_CP018155.1\|WP_072554581.1\|498847_499783_+\|2-nitropropane-dioxygenase	gnl\|CDD\|132195	TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.	2.26278e-106
NZ_CP018155.1\|WP_072554594.1\|512245_513085_+\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|181386	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase.	5.05484e-176
NZ_CP018155.1\|WP_072554588.1\|506114_506681_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.92968e-33
NZ_CP018155.1\|WP_072554589.1\|506887_507691_+\|SDR-family-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.20535e-92
NZ_CP018155.1\|WP_072554575.1\|494646_495243_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	7.33836e-32
NZ_CP018155.1\|WP_072554582.1\|499798_500773_-\|phosphotransferase	gnl\|CDD\|236561	PRK09550, mtnK, methylthioribose kinase; Reviewed.	1.18807e-16
NZ_CP018155.1\|WP_072554590.1\|507823_508477_+\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	3.84813e-147
NZ_CP018155.1\|WP_072554591.1\|508767_510453_+\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	9.91046e-129
NZ_CP018155.1\|WP_072554583.1\|500784_501735_-\|hypothetical-protein	gnl\|CDD\|238257	cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleoside hydrolase to scavenge purine and/or pyrimidines from the environment. .	2.19139e-15
NZ_CP018155.1\|WP_072554593.1\|510965_512123_-\|hypothetical-protein	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	9.22565e-09
NZ_CP018155.1\|WP_072554592.1\|510452_510869_+\|DNA-binding-protein	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	3.82389e-28

>NZ_CP018155.1|WP_072554584.1|501761_503603_-|cystathionine-beta-synthase
MKNNKKVQYIKSVLNNMPTSWLSLTTHRLDIYNETLAKTEFLEQFELLYNNDNSELLSLNELPTAYDYIRLGHPLSCILEWTIGNLNNLKSENVISFDSKTIPVLAILRKNLLENKNTQIVYSGELPQNFNAEILRTVYGYQFELKSIENIKEVSEFNGSTIFISQNDKIEVSNLNSNIDFFISLHAHLGSILLVNGKQNENYISDIQHVRRRETIAMTPANCLVALESLISETTVEHKNIDEAKKESVLNSIKEITDTNTKPLVSSSGLSIQYAILMGLIDDAQEKNPGKAIKIIVPPNCYGGTNDQARRVAACIKNVAVVDLPVDGDNDMVKSIDMVLTKIAAQDAIPYIIAEIPTNPRVEVPNLIDLRTVLSKERTTSKGNIAIDPVFILDQTFCPNVRFLGENDILSTVRTISFASGSKFPSGGKCTAGYCVGNIKTSALMEKIALHLTLCDNEATDLQYEILAEQLPSMNKRIVDAYKNTREFVNFIHETLPEAKINFVSEELAQQGFTPSVFSLDLPTKGNTTEEKETYKRALNHKLINLMITEIPTESKYCVSYGQLKGCYWTIPATSTQGTTKEGDKDYIARVALSANMDLELHKKIFSTFVESI
>NZ_CP018155.1|WP_072554583.1|500784_501735_-|hypothetical-protein
MKFHTTKASKIIGLHVFFGLFIFCSLSAKSQETLKPLPLIIDADTANEVDDLYAIVRAILEPNFNLIGISSAQFHTSPLASENTVEESQQINEEILKLMNVKGISLPLGSNSPLTEYGKPVTSEASKFIIETAHRMKKDEKLNIIILGSCTNVASAILEDPSIISKIKVHYLGFWHTVATNTYNKKEFNSGNDPIAVEVLLNTKTLDLNVMTATTSQKLVFTKQEVDRQLKNKKGVANYLIKRWETYERWWTKDDPKKEKWTMWDVAIIEALAQPEWSTVKGFLTPPENTQRTIGIHTNINTDKMKHNFWSALEKL
>NZ_CP018155.1|WP_072554582.1|499798_500773_-|phosphotransferase
MFIDQQTSLEEIKKLLQKIDFLTDNNENIIKVTKPGEGNMNVVLRIKTNLRSFILKQSRPFVQKYKNIDAPIERIDVEYQFYKTIANNTLLDKHLPKILQYNSENHLLILEDLGECEDMTNLYNSDEIEIQQLELLINVIANIHNSKTPESYPENKGLRLLNHQHIFELPFIENNGFSLNDIQPGLEELSIPYKKDILLKERIKEVGNKYLSEGKTLLHGDYYPGSWMRKGNDIYIIDPEFSFLGFAEFDLGVLAAHAILISQNRTVLSTIEKNYPQKIDSKLLNQVAGIEIMRRLIGLAQLSISLTIKEKGELLKTAYSLVMD
>NZ_CP018155.1|WP_072554581.1|498847_499783_+|2-nitropropane-dioxygenase
MKNNKITQLFNIKYPIIQGGMIWVSGYKLASAVSNAGGLGLIGAGSMYPDVLREHIQKCKKATDKPFGVNVPMLYPQIDKIMNIIVEEGVKIVFTSAGNPKTWTAFLKEKGITVVHVVSSVKFALKAEAAGVDAVVCEGFEAGGHNGREETTTFTLIPMVKEQVKIPVISAGGIGTGRGMLAAMVLGADGVQIGSRFAATLESSAHDNFKQTIVNVKDGGTQLTLKELAPVRLVKNKFFQEVQELYKQNPTVGQIKELLGRARAKRGMFEGDLEDGELEIGQIAGLIHEIKPAKDVLEEIIAEYNLVKENL
>NZ_CP018155.1|WP_158009648.1|497596_498793_+|tRNA-2-thiouridine(34)-synthase-MnmA
MFKMKRVIVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVTISDECPWLEDSNDAMLVAEKLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDILCNREIKFDVFMDIALDLGADYVATGHYCRKGEEEIDGKPVYKLLAGKDGNKDQSYFLCQLSQQQLAKAMFPIGELTKPEVREIAKKADLITAEKKDSQGLCFIGKVRLPDFLQQKLQPKNGVIVQIPSDFEQYTKPVPKFENKEAELAYFSTKFSYKKEAGKVVGKHNGAHYFTKGQRKGLNVGGTKEALYVIETDVNENVIYTGEGKKHQGLYRNVLFVSNEELHWVREDLALKTDESMQVEGRIRYRQVLEKATLYKVESGLFVEFENPQSAIQEGQFVAWYKNEELLGSGVIS
>NZ_CP018155.1|WP_158009586.1|496709_497459_+|toxin-antitoxin-system-YwqK-family-antitoxin
MCIFTSKFYNMIKIKSLSILSLFFLIFFTAEGFSQKVGDKVNAVDENGKRHGNWKKYYKNGRLRYTGNFKNGKEVGIFMYFDMTNSDQPTIIKIFSENSTIAKVEHQTSKGVLKSMGNMDGRNRVGKWKYFFPSGKVLSEENYVNGKLEGLLVNYYPNGKVTEETYYKNGLKNGISKKYTDEGNLLEEVNYTANKPNGIAKFYDLKGNLKETGNYKAGKREGRWEFFVDGEAVSKKDKHNRKTHSIPKQ
>NZ_CP018155.1|WP_072554578.1|496115_496697_-|hypothetical-protein
MSIIFLTTQLNNMENPKRENRQRVADIVLENKDLFKDLVAITFDVENKVSIKAAWILEWICTHHHLNWILPHLDEFTTNIANLKFDSAIRPCAKICEHLATAYYSKKENEVQSHLTTEHKDAIIETGFDWLITPQKIAVRAYTMNSLYFFGLEKDWIHPELANLISTKIIHESKGCKARGKFILNLIEKRQRN
>NZ_CP018155.1|WP_072554577.1|495697_496042_-|hypothetical-protein
MNTQAIHTSSLQRKKSITILPIKWVNDFIEKEKTNGLGITLAYIMIGTGVGSITAALSVHNTVNLFILMTSVSLAMATNAAVISQQSFKFTTWMFVISMKINAILLIYQIANLF
>NZ_CP018155.1|WP_072554576.1|495309_495711_+|group-III-truncated-hemoglobin
MELKDIENREDVFLLVSTFYAKIKKDDFIGPIFLKAIPEPEWNPHLEKLTDFWETNLFFAKKYKGNPMKVHQKLDAENNYGITQKHFGKWLELWIVTLDELFYGEKAIKAKNNARNIAFMLFLKMFQHKPKTN
>NZ_CP018155.1|WP_072554575.1|494646_495243_-|Crp/Fnr-family-transcriptional-regulator
MINEELLQEFGAIIKEYSKNEIIFNQDESARNYYQIISGAVKMNNFNDDGKEFIQGIFYKGQSFGEPPLFIDVKYPANAETLSESSIIVLPKTNLLKLLYQHPEIHLNITKSLANRLYYKAIIASEISSQEPEHRVLRFIDYLKDDVHKITGNFTFKVDHTRQQIADILGLRVETVIRAVKNLEAKNEIKIIKRKVFR
>NZ_CP018155.1|WP_072554586.1|504525_505614_-|hypothetical-protein
MKPIYKITFFFLLIPAILFANTNPKKKHEKSRTIKKEFNVNSDATVDISNKYGNITVTTWNENRVEIDVKITVKGNNLDSVEDKLNSIKIEFDATKSLVEARTILGSQKSSWSSWWGKSNNMSYQINYVIKMPRTNNVDFNNKYGNIILGELEGEANISCDYGKILIEELHNKNNMIDLDYCSQSTINYMNSGDVSIDYSKLLIEKTNKIKTNADYSNIHIGEADIVDFNSDYGSVTIDEANDINGNSDYASMKLGTVNKNLTIDTDYGGLRVKNLAKGFENVTIDGSYAGIKIGTSSANNFDFTIDLGYASFSYPDEKINMRKSIKKTSKKFYEGSFGKGSNSSKIHIKSGYGGVSLKLND
>NZ_CP018155.1|WP_072554587.1|505597_506125_-|hypothetical-protein
MEDNLDTFFSENKFDFHEPHSGHAERFKRKLNNPGKVNKTSWKWLSVAASVVLLVGFWLGANQQPTQLDLADLSPKMEETQNYFVATIHHELKELEKHRSLDTEVIIEDALEELEKLEDRYKYFIDELNENGYEKRIVYEMINNYQQRLEILNNVIQQIEEIKNTNTIQKDEAYI
>NZ_CP018155.1|WP_072554588.1|506114_506681_-|RNA-polymerase-sigma-factor
MKAQNQHITKLIERCKNSDQTAQMEVYNGYYKAMYNTSFRILKDEFEAEDLMQEAFLTAFTKLHTFKGEVTFGAWLKRIVINKSLTQLKKNNRYEDVKMEIVSDNNVEEEPVNYSGIDPKEVLKYLNALKENYRLVLTLNLIEGYDYEEIAEILNYSNENVRTTVSRAKKKLKQVTLANTNKIQEYGR
>NZ_CP018155.1|WP_072554589.1|506887_507691_+|SDR-family-oxidoreductase
MSKVVLITGASSGIGKAIAIYLLSKGFTVYGTSRSEANAAKFPFNLVALDVTKPATITSAVEKVIAKEGRLDVLINNAGKGITGAIEDTPTEEMKTNFDTNFFGPIEVMKAVLPQMRKQKSGLILNVTSIAGYMGLPFRGIYSASKGALELITEATNMEVNQFGINVVNVAPGDFATNIASGRYHTPVFENSAYKEKYAENLALMDSHVSGGMDPIVMAKKVLQIINTKNPKVHYKVGGFMEKFSIVLKRILPDKWYQKLLMNHYKL
>NZ_CP018155.1|WP_072554590.1|507823_508477_+|fructose-6-phosphate-aldolase
MKFFIDTANLAQIEEAQAMGILDGVTTNPSLMAKEGITGEANIINHYKAICELVDGDVSAEVISTDFDGMVKEGEALAALNPQIVVKLPMIKDGVKACKYFSSKGIKTNVTLVFSAGQALLAAKAGATYVSPFIGRLDDISTDGLNLIAEIRHIYDNYGFETEILAASVRHTMHIIDCAKLGSDVMTGPLSAIEGLLRHPLTDSGLAKFLADYKKGN
>NZ_CP018155.1|WP_072554591.1|508767_510453_+|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MYPKKELAQLVISACNQFNIDTVVISPGSRNAPLTVGFSNHPKIEALSVVDERCAAFFALGIAQQTQKPVAVVCTSGSALLNYYPAIAEAFYSNIPLVVISADRPKHLIDIGDGQTIRQENVFQNHILFSANLEENSKFKTQNSKLISEALQTSITKKGPVHINVPFDEPLYETVSELKSFKVESLKVDDVVASKTKQSVDYEKLTKIWNSSTKKMILVGVNYPDEVVQNLINHFSEDNSVLILTETTSNLYHKNHINSIDKLIFSLDENESENLHPEVLLTFGGMVVSKKIKQFLRKYQPKHHWHIDEQKAMDTYFCLSEFVQEKPAVFLQVLIEETKKNNFTLSAVETYQQKWLSKRDEKEENHNVFLADCGYSDFKAFEQVLESIPDNCQLQISNSSIIRYAQLFNLNKTLQVFCNRGTSGIDGSTSTAIGAAFASNKQTVFITGDVSFFYDSNALWNNNIPKNFRIILINNSGGGIFKIIPGPKSTNALNYFETPHGLTAEHLAKMYDFEYEQVTDLKSLEKGLSDFYLASNQPKILEICTPSELNDVILRDYFKSI
>NZ_CP018155.1|WP_072554592.1|510452_510869_+|DNA-binding-protein
MDFEEGDKVDLIIEQQTPMGYIVLINDEFEGLLYSNEIFSDVEEGMETEGYIKKIREDNKIDVSLRPQGFRAVIDSDVDKVLTKLEEKGFILLTDKSSPESIKFHLQMSKKAFKKAVGNLYRQKLIVISDDRIELVEQ
>NZ_CP018155.1|WP_072554593.1|510965_512123_-|hypothetical-protein
MKNNWGILILLLVSLSSFSQEFINKKFESKELRSTRDLKIYLPEGYQKDSINNYPLAIIIDGEHLFDTYVASSKLFSMTDKAPKQIVVGIQINKTREEDTYFDENTYQLTGGNVKFLRFIKNEILPFMEGSYRTSPFISIIGQGSSVNLVTQFLNEKPPIFNAYIAINPLFAPNITAKTMSFQVDKFEKEDNTFYLYINDAPFFSKEKKKPLPELKTYLSSISAKNFHFKYDEMNSESYISSLGEAIPRAMDKIFETYGSITTKEFEEKIKALEPSDAIAYLENKYLDIDFLFGSNLGIREKDIFIIEDVIIDKEDGDYLRNFGEMILNVYPRSHIGDYYVGLYFEKKGKMSLALESYRSGYDKMSNSDPNKSLFYTNIERVSGR
>NZ_CP018155.1|WP_072554594.1|512245_513085_+|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MIKPDWKTAKVYEDITYKKSHNVARIAFNRPNVRNAFRPHTTSELLDAFNDAHEDTNIGVVLLSAEGPSTKDGIWSFCSGGDQNARGHQGYVGKDGYHRLNILEVQRLIRFMPKAVICVVPGWAVGGGHSLHVTCDLTLASKEHAIFKQTDADVTSFDAGYGSAYLAKMVGQKRAREIFFLGRNYSAQEAYEMGMVNAVIPHDELEQTAFDWAQEILEKSPTSIKMLKFAMNLTDDGMVGQQVFAGEVTRLAYMTDEAKEGRDAFLEKRKPNFPKTWIP
>NZ_CP018155.1|WP_072554595.1|513094_513703_+|fumarylacetoacetate-hydrolase-family-protein
MKIICIGRNYAKHIEELANERPDNPVVFLKPDSAILPRKNPFFIPPFSNDVHYEVEVLVKINKVGKHIQPKFAHKYYDEVGLGIDLTARDVQAKCKEKGLPWEKAKAFDGSAVVGEFYPKEEFDLDNLKFQLYKNDEIVQDGNTNAMLWKTDELISYVSQYFTLKKGDIIFTGTPAGVGRVVENDTLKGVIEGKEAFNIRVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018155_1	1.2\|503870\|34\|NZ_CP018155\|CRT	503870-503903	34	NZ_CP046030	Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence	13708-13741	9	0.735
NZ_CP018155_1	1.2\|503870\|34\|NZ_CP018155\|CRT	503870-503903	34	NZ_CP031279	Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence	33431-33464	9	0.735
NZ_CP018155_1	1.2\|503870\|34\|NZ_CP018155\|CRT	503870-503903	34	NZ_CP031273	Staphylococcus chromogenes strain 17A plasmid unnamed1	24528-24561	9	0.735

1. spacer 1.2|503870|34|NZ_CP018155|CRT matches to NZ_CP046030 (Staphylococcus chromogenes strain 1401 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

tactcgctttaattttattgctaacatttgtttt	CRISPR spacer
gagacaaattaattttattgataatatttgtttc	Protospacer
 *  *.  ************ ***.********.

2. spacer 1.2|503870|34|NZ_CP018155|CRT matches to NZ_CP031279 (Staphylococcus hominis strain 19A plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

tactcgctttaattttattgctaacatttgtttt	CRISPR spacer
gagacaaattaattttattgataatatttgtttc	Protospacer
 *  *.  ************ ***.********.

3. spacer 1.2|503870|34|NZ_CP018155|CRT matches to NZ_CP031273 (Staphylococcus chromogenes strain 17A plasmid unnamed1) position: , mismatch: 9, identity: 0.735

tactcgctttaattttattgctaacatttgtttt	CRISPR spacer
gagacaaattaattttattgataatatttgtttc	Protospacer
 *  *.  ************ ***.********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1885761 : 1948679

Staphylococcus_phage(25.0%)

protease,transposase,integrase

attL 1907727:1907746|attR 1952714:1952733

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072555919.1\|1885761_1886829_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.7e-30	31.6
WP_158009622.1\|1887233_1887395_+	hypothetical protein	NA	NA	NA	NA
WP_072556954.1\|1887544_1888066_+	hypothetical protein	NA	NA	NA	NA
WP_072555920.1\|1888223_1889069_+	hypothetical protein	NA	NA	NA	NA
WP_072555921.1\|1889239_1891225_+	hypothetical protein	NA	NA	NA	NA
WP_083426204.1\|1891399_1892407_+	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_072555922.1\|1892565_1893144_+	hypothetical protein	NA	NA	NA	NA
WP_072555923.1\|1893354_1895097_+	TIGR04141 family sporadically distributed protein	NA	NA	NA	NA
WP_072555924.1\|1895284_1896568_+	hypothetical protein	NA	NA	NA	NA
WP_158009623.1\|1896771_1898001_+	hypothetical protein	NA	NA	NA	NA
WP_162272276.1\|1898365_1900588_+	hypothetical protein	NA	NA	NA	NA
WP_072555927.1\|1900814_1901528_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_072554704.1\|1901691_1902684_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_072555928.1\|1902903_1903320_+	hypothetical protein	NA	NA	NA	NA
WP_158009625.1\|1903316_1903985_+	hypothetical protein	NA	NA	NA	NA
WP_072555930.1\|1904040_1904400_+	hypothetical protein	NA	NA	NA	NA
WP_072555931.1\|1904411_1904966_+	hypothetical protein	NA	NA	NA	NA
WP_072555932.1\|1904993_1905503_+	hypothetical protein	NA	NA	NA	NA
WP_072555933.1\|1905662_1906742_+	hypothetical protein	NA	NA	NA	NA
WP_072555934.1\|1907201_1907642_+	hypothetical protein	NA	NA	NA	NA
1907727:1907746	attL	NA	NA	NA	NA
WP_072555935.1\|1907857_1908100_+	hypothetical protein	NA	NA	NA	NA
WP_072555936.1\|1908090_1908408_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_072555937.1\|1908785_1909469_+	hypothetical protein	NA	NA	NA	NA
WP_072555938.1\|1910135_1910801_+	hypothetical protein	NA	NA	NA	NA
WP_072555939.1\|1911122_1912391_+	hypothetical protein	NA	NA	NA	NA
WP_072555940.1\|1912629_1913217_+	hypothetical protein	NA	NA	NA	NA
WP_072555941.1\|1913384_1915343_+	AAA family ATPase	NA	NA	NA	NA
WP_072555942.1\|1915665_1916760_+	hypothetical protein	NA	NA	NA	NA
WP_072555943.1\|1916908_1917799_+	hypothetical protein	NA	NA	NA	NA
WP_072554704.1\|1917966_1918959_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_072555944.1\|1919179_1919656_+	SRPBCC family protein	NA	NA	NA	NA
WP_072555945.1\|1919806_1920610_+	hypothetical protein	NA	NA	NA	NA
WP_162272277.1\|1920796_1921273_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_072555947.1\|1921604_1922147_+	hypothetical protein	NA	NA	NA	NA
WP_072554704.1\|1922314_1923307_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_158009626.1\|1923542_1923995_+	hypothetical protein	NA	NA	NA	NA
WP_072555950.1\|1924492_1925134_-	hypothetical protein	NA	NA	NA	NA
WP_072555951.1\|1925271_1925712_-	hypothetical protein	NA	NA	NA	NA
WP_158009627.1\|1925961_1926129_-	hypothetical protein	NA	NA	NA	NA
WP_072555953.1\|1927147_1928173_-	hypothetical protein	NA	NA	NA	NA
WP_072556956.1\|1928238_1931067_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_072555954.1\|1931068_1932283_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.7e-28	27.4
WP_072555955.1\|1932286_1933888_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	9.8e-157	55.9
WP_072555956.1\|1933997_1934891_-	hypothetical protein	NA	NA	NA	NA
WP_072555957.1\|1934896_1935181_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_072555958.1\|1935282_1937331_-	hypothetical protein	NA	NA	NA	NA
WP_072555959.1\|1937334_1938552_-\|integrase	site-specific integrase	H7BUI8	unidentified_phage	9.8e-16	30.0
WP_083426207.1\|1938943_1939990_+	hypothetical protein	NA	NA	NA	NA
WP_072555961.1\|1941390_1942527_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	A0A0C5K8U0	Enterococcus_phage	1.7e-14	25.9
WP_072555962.1\|1942653_1942992_-	gliding motility protein GldC	NA	NA	NA	NA
WP_072555963.1\|1942991_1943951_-	gliding motility lipoprotein GldB	NA	NA	NA	NA
WP_072555964.1\|1944098_1944887_+	NAD(+) synthase	A0A0K0KVL1	Prochlorococcus_phage	6.3e-56	49.4
WP_072555965.1\|1945348_1947367_-	DNA primase	A0A1B0WMR3	Flavobacterium_phage	4.2e-56	34.5
WP_072555966.1\|1947440_1948679_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.5e-109	51.5
1952714:1952733	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage