CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013301	Vibrio cholerae strain C5 chromosome 1, complete sequence	0 crisprs	DEDDh,DinG,csa3,cas3,WYL,csx1,RT	0	0	5	0
NZ_CP013302	Vibrio cholerae strain C5 chromosome 2	0 crisprs	Cas9_archaeal,RT,PD-DExK,csa3,cas3	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

572561 : 579785

uncultured_Mediterranean_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000698379.1\|572561_573314_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	8.0e-69	53.3
WP_000002982.1\|573306_573933_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	52.1
WP_000177568.1\|573932_574868_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	7.8e-05	34.7
WP_000116737.1\|574941_575949_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.0e-35	34.2
WP_001894770.1\|576041_578630_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.2e-33	23.0
WP_001279365.1\|578897_579785_-	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	4.1e-56	41.1

DBSCAN-SWA_2

811133 : 818326

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000775253.1\|811133_812348_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-32	30.5
WP_000331703.1\|812384_812768_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000301571.1\|812828_813152_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_001105747.1\|813200_813716_+	co-chaperone HscB	NA	NA	NA	NA
WP_001196560.1\|813739_815590_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.3e-106	41.1
WP_001124187.1\|815603_815942_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_000872176.1\|815990_816185_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_000107237.1\|816404_817694_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.7e-34	34.3
WP_001162850.1\|817897_818326_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4

DBSCAN-SWA_3

1556700 : 1584490

Vibrio_phage(61.54%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149591715.1\|1556700_1558806_-	RTX toxin T1SS ABC transporter subunit RtxB	W8CYL7	Bacillus_phage	4.9e-39	27.1
WP_001906284.1\|1559232_1559580_+	hypothetical protein	NA	NA	NA	NA
WP_001881196.1\|1559605_1560067_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA
WP_000517826.1\|1560090_1573728_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	B3Y8K3	Vibrio_virus	8.4e-07	100.0
WP_000593522.1\|1574185_1574560_-	cholera enterotoxin binding subunit CtxB	Q77DH7	Vibrio_virus	7.8e-65	100.0
WP_001881225.1\|1574556_1575333_-	cholera enterotoxin catalytic subunit CtxA	A0A142I6Y0	Vibrio_phage	1.3e-151	100.0
WP_000021616.1\|1575431_1576631_-	zonula occludens toxin ZOT	A0A142I6Z1	Vibrio_phage	5.3e-240	100.0
WP_000979342.1\|1576627_1576921_-	accessory cholera enterotoxin	A0A0F6YNQ7	Vibrio_phage	3.7e-46	100.0
WP_001268534.1\|1576917_1578105_-\|coat	minor coat protein pIII	A0A142I701	Vibrio_phage	1.4e-200	100.0
WP_000493022.1\|1578211_1578460_-	colonization factor	A0A0N7F140	Vibrio_phage	8.8e-33	100.0
WP_001911548.1\|1578595_1578955_-	hypothetical protein	A0A0N9HE73	Vibrio_phage	4.4e-65	100.0
WP_000693566.1\|1580160_1580499_+	helix-turn-helix transcriptional regulator	U5TNA1	Satellite_phage	7.3e-54	100.0
WP_000170634.1\|1580988_1581573_-	DNA-binding protein	E3U9I9	Vibrio_phage	6.4e-114	100.0
WP_001161489.1\|1581565_1581733_-	hypothetical protein	E3U9J0	Vibrio_phage	2.3e-13	100.0
WP_001052672.1\|1581810_1582503_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000512956.1\|1582632_1582902_-	hypothetical protein	NA	NA	NA	NA
WP_001881266.1\|1582921_1584490_-	replication protein	A7BJY2	Enterobacteria_phage	2.7e-58	32.3

DBSCAN-SWA_4

2325571 : 2374884

Vibrio_phage(89.13%)

integrase,plate,portal,tRNA,capsid,terminase,head,tail

attL 2341984:2342007|attR 2375094:2375117

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000186559.1\|2325571_2326054_-\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_000809002.1\|2326187_2327849_-	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
WP_000400335.1\|2328390_2329242_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.6e-47	40.7
WP_000933144.1\|2329261_2330074_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_000272895.1\|2330089_2330473_-	SirB2 family protein	NA	NA	NA	NA
WP_000117270.1\|2330472_2331333_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_000647701.1\|2331336_2332425_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	2.4e-05	46.4
WP_000054219.1\|2332454_2333714_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_000993150.1\|2333872_2334490_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_000581228.1\|2334486_2335359_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_001113134.1\|2335389_2336334_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.7e-44	38.0
WP_000081944.1\|2336502_2337093_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000505884.1\|2337103_2338195_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_000290380.1\|2340534_2341668_-	flagellin	NA	NA	NA	NA
2341984:2342007	attL	NA	NA	NA	NA
WP_000779002.1\|2342691_2344323_-	hypothetical protein	U3PB83	Vibrio_phage	0.0e+00	100.0
WP_000457681.1\|2344319_2344793_-	hypothetical protein	U3PDI0	Vibrio_phage	6.6e-77	100.0
WP_000267787.1\|2344780_2345674_-	hypothetical protein	U3PIM3	Vibrio_phage	2.8e-161	100.0
WP_000369864.1\|2345676_2346201_-	hypothetical protein	A9ZT45	Vibrio_virus	4.8e-97	100.0
WP_000083759.1\|2346200_2348063_-\|tail	phage tail protein	Q8HA58	Vibrio_phage	0.0e+00	100.0
WP_000005870.1\|2348059_2348719_-	hypothetical protein	U3PB79	Vibrio_phage	8.2e-126	100.0
WP_000044509.1\|2348715_2349915_-\|plate	baseplate J/gp47 family protein	U3PDH5	Vibrio_phage	1.0e-222	100.0
WP_001113003.1\|2349911_2350244_-	DUF2590 family protein	U3PIM1	Vibrio_phage	1.7e-55	100.0
WP_000343647.1\|2350233_2352051_-\|tail	phage tail tape measure protein	U3PFL8	Vibrio_phage	0.0e+00	100.0
WP_000165786.1\|2352247_2352529_-	hypothetical protein	A9ZT39	Vibrio_virus	5.1e-45	100.0
WP_001881877.1\|2352525_2352828_-	hypothetical protein	U3PCH1	Vibrio_phage	1.5e-50	100.0
WP_000990572.1\|2352736_2353078_-	hypothetical protein	U3PB75	Vibrio_phage	1.1e-52	100.0
WP_000705022.1\|2353052_2353640_-	lysozyme	U3PDH1	Vibrio_phage	2.5e-110	100.0
WP_001077689.1\|2353626_2353854_-	hypothetical protein	U3PIL8	Vibrio_phage	2.1e-36	100.0
WP_000382491.1\|2353850_2354060_-	TraR/DksA family transcriptional regulator	U3PFL5	Vibrio_phage	2.0e-33	100.0
WP_000063627.1\|2354074_2354533_-	DUF2597 family protein	U3PCG7	Vibrio_phage	1.3e-82	100.0
WP_000312540.1\|2354532_2355642_-	DUF2586 family protein	U3PB71	Vibrio_phage	1.5e-209	100.0
WP_000461677.1\|2355643_2356303_-	phage virion morphogenesis protein	U3PDG7	Vibrio_phage	9.1e-117	100.0
WP_000122189.1\|2356289_2356778_-\|tail	phage tail protein	U3PIL4	Vibrio_phage	1.6e-89	100.0
WP_000493401.1\|2356774_2357236_-\|head	head completion/stabilization protein	U3PFL1	Vibrio_phage	1.5e-78	100.0
WP_000059165.1\|2357342_2358059_-\|terminase	terminase endonuclease subunit	U3PCG2	Vibrio_phage	1.3e-132	100.0
WP_000078361.1\|2358074_2359085_-\|capsid	phage major capsid protein, P2 family	U3PB67	Vibrio_phage	7.0e-193	100.0
WP_001127095.1\|2359121_2360021_-\|capsid	GPO family capsid scaffolding protein	A0A160DHM4	Vibrio_phage	4.0e-123	100.0
WP_000331803.1\|2360194_2362012_+\|terminase	terminase ATPase subunit family protein	U3PIL1	Vibrio_phage	0.0e+00	100.0
WP_001999948.1\|2362008_2363055_+\|portal	phage portal protein	U3PFK6	Vibrio_phage	5.7e-206	100.0
WP_000729650.1\|2363038_2363254_+	hypothetical protein	U3PCF7	Vibrio_phage	3.1e-34	100.0
WP_001263191.1\|2363324_2363576_+	ogr/Delta-like zinc finger family protein	U3PB63	Vibrio_phage	1.9e-43	100.0
WP_001292395.1\|2363576_2363822_-	hypothetical protein	U3PDF9	Vibrio_phage	1.5e-37	100.0
WP_001140408.1\|2364059_2364398_+	helix-turn-helix transcriptional regulator	U3PIK7	Vibrio_phage	2.8e-53	100.0
WP_000756239.1\|2364471_2365008_-	DUF262 domain-containing protein	U3PFK3	Vibrio_phage	4.1e-99	100.0
WP_001909657.1\|2365017_2367603_-	replication endonuclease	A0A166YHE2	Vibrio_phage	0.0e+00	99.9
WP_000613058.1\|2367599_2368184_-	hypothetical protein	U3PB60	Vibrio_phage	3.2e-105	100.0
WP_000629095.1\|2368180_2368291_-	hypothetical protein	NA	NA	NA	NA
WP_000099608.1\|2368287_2368905_-	DNA methyltransferase	U3PDF3	Vibrio_phage	1.2e-118	100.0
WP_001198814.1\|2368901_2369129_-	hypothetical protein	U3PIK2	Vibrio_phage	3.2e-37	100.0
WP_000997540.1\|2369378_2369789_-	hypothetical protein	U3PCE8	Vibrio_phage	1.8e-75	100.0
WP_001031152.1\|2369785_2370319_-	hypothetical protein	U3PB56	Vibrio_phage	3.9e-86	100.0
WP_001272765.1\|2370400_2370835_-	hypothetical protein	U3PDF0	Vibrio_phage	2.8e-74	100.0
WP_000253093.1\|2370847_2371387_-	phage regulatory CII family protein	U3PIJ8	Vibrio_phage	5.5e-96	100.0
WP_000959026.1\|2371497_2371710_-	hypothetical protein	U3PFJ1	Vibrio_phage	6.4e-32	100.0
WP_001881894.1\|2371855_2372503_+	phage repressor protein CI	A0A166YHA0	Vibrio_phage	1.1e-119	100.0
WP_000132153.1\|2372528_2373434_+	NAD-dependent DNA ligase	U3PB51	Vibrio_phage	1.3e-161	100.0
WP_000985033.1\|2373433_2373847_+	hypothetical protein	U3PDE6	Vibrio_phage	8.9e-70	100.0
WP_000116333.1\|2373846_2374884_+\|integrase	site-specific integrase	U3PIJ4	Vibrio_phage	1.5e-198	100.0
2375094:2375117	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2463456 : 2470073

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000864130.1\|2463456_2463927_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7
WP_001122865.1\|2464191_2465301_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
WP_000493874.1\|2465341_2465995_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-31	38.2
WP_001131994.1\|2465999_2467103_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.3e-43	33.1
WP_000543544.1\|2467128_2467578_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_000366574.1\|2467677_2468928_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.0e-100	49.5
WP_000210573.1\|2468939_2470073_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-64	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage