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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP018139 Halomonas aestuarii strain Hb3 chromosome, complete genome 5 crisprs DEDDh,DinG,cas3,csa3,WYL 0 3 3 0

Results visualization

1. NZ_CP018139
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018139_1 455406-455501 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018139_2 1050394-1050612 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018139_3 1641454-1641573 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018139_4 2362693-2362787 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018139_5 3485490-3485817 Orphan NA:I-E
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018139_5 5.1|3485520|31|NZ_CP018139|PILER-CR 3485520-3485550 31 MK468591 Mycobacterium phage Arissanae, complete genome 26917-26947 6 0.806
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NZ_CP004394 Celeribacter indicus strain P73 plasmid pP73A, complete sequence 88718-88748 6 0.806
NZ_CP018139_5 5.1|3485520|31|NZ_CP018139|PILER-CR 3485520-3485550 31 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4159311-4159341 7 0.774
NZ_CP018139_5 5.1|3485520|31|NZ_CP018139|PILER-CR 3485520-3485550 31 NZ_CP046906 Streptomyces sp. QHH-9511 plasmid unnamed, complete sequence 24935-24965 7 0.774
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 435376-435406 7 0.774
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NC_022042 Paracoccus aminophilus JCM 7686 plasmid pAMI1, complete sequence 101706-101736 7 0.774
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NC_005262 Burkholderia cepacia phage Bcep22, complete genome 59855-59885 7 0.774
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NZ_CP029834 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence 285029-285059 7 0.774
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NZ_CP050092 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence 156955-156985 7 0.774
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1546612-1546642 7 0.774
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NZ_CP030761 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence 1072001-1072031 7 0.774
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NZ_CP050086 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence 922503-922533 7 0.774
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NC_023600 Mycobacterium phage Jolie1, complete genome 44166-44196 7 0.774
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NC_022061 Mycobacterium phage KayaCho, complete genome 43950-43980 7 0.774
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NC_024145 Mycobacterium phage Hosp, complete genome 42392-42422 7 0.774
NZ_CP018139_5 5.1|3485520|31|NZ_CP018139|PILER-CR 3485520-3485550 31 NZ_AP017899 Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence 130421-130451 8 0.742
NZ_CP018139_5 5.1|3485520|31|NZ_CP018139|PILER-CR 3485520-3485550 31 NZ_CP017300 Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence 81844-81874 8 0.742
NZ_CP018139_5 5.1|3485520|31|NZ_CP018139|PILER-CR 3485520-3485550 31 NZ_CP046573 Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence 527714-527744 8 0.742
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NZ_CP035511 Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence 74800-74830 8 0.742
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NZ_CP014797 Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence 145825-145855 8 0.742
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 476716-476746 8 0.742
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NC_009339 Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence 296443-296473 8 0.742
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NC_005342 Burkholderia phage Bcep43, complete genome 15287-15317 8 0.742
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NC_004333 Burkholderia phage Bcep781, complete genome 15316-15346 8 0.742
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 AY368235 Burkholderia cepacia phage Bcep43, complete genome 15287-15317 8 0.742
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 AF543311 Burkholderia cepacia phage Bcep781, complete genome 15316-15346 8 0.742
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NZ_CP018001 Rhizobium sp. Y9 plasmid pY9, complete sequence 307921-307951 9 0.71
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NZ_CP041206 Rhizobium sp. NIBRBAC000502774 plasmid pMK-3, complete sequence 231472-231502 9 0.71
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NC_022536 Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence 137662-137692 9 0.71
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NZ_CP053858 Rhizobium pusense strain 76 plasmid pR76, complete sequence 349793-349823 9 0.71
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NC_021909 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence 34638-34668 9 0.71
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NZ_CP029209 Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence 678922-678952 9 0.71
NZ_CP018139_5 5.2|3485581|31|NZ_CP018139|PILER-CR 3485581-3485611 31 NZ_CP054030 Rhizobium sp. JKLM19E plasmid pPR19E03 112708-112738 9 0.71
NZ_CP018139_5 5.4|3485703|31|NZ_CP018139|PILER-CR 3485703-3485733 31 NZ_CP035710 Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence 10439-10469 9 0.71

1. spacer 5.1|3485520|31|NZ_CP018139|PILER-CR matches to MK468591 (Mycobacterium phage Arissanae, complete genome) position: , mismatch: 6, identity: 0.806

cttccccgttggccttgacggtggtgtagag	CRISPR spacer
cggccccgttgcgcttgacggtggtgtagtc	Protospacer
*  ********  ****************  

2. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 6, identity: 0.806

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatccgcgagatcaccggcggcggggc	Protospacer
********* ****.********  ** *.*

3. spacer 5.1|3485520|31|NZ_CP018139|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.774

cttccccgttggccttgacggtggtgtagag	CRISPR spacer
cgtcggcgttggccttggcggtggtgtacgc	Protospacer
* **  ***********.********** . 

4. spacer 5.1|3485520|31|NZ_CP018139|PILER-CR matches to NZ_CP046906 (Streptomyces sp. QHH-9511 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

cttccccgttggccttgacggtggtgtagag	CRISPR spacer
cgttgaggtgggcctcgacggtggtgtagag	Protospacer
* *.   ** *****.***************

5. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 7, identity: 0.774

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatcctcgatttcaccggctcggatcc	Protospacer
*************  ********.* *   *

6. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NC_022042 (Paracoccus aminophilus JCM 7686 plasmid pAMI1, complete sequence) position: , mismatch: 7, identity: 0.774

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aagagatcatcgagatcaccggccccgatgc	Protospacer
*.* **** *****.************  .*

7. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 7, identity: 0.774

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
acgcgttcctcgagggcaccggcccgcaggc	Protospacer
* *** ********* *********   *.*

8. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.774

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
cgtcggccaccgggcgcttgccgatcttcag	Protospacer
.***** **************** **  * .

9. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 7, identity: 0.774

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
tgccgtgcaccgggcgcttgccgatgtgaaa	Protospacer
**.** ***************** *  *  *

10. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
cgacgggcaccgtgcgctcgccgttcgggcc	Protospacer
.* ********* *****.*******.* * 

11. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
tgccgtgcaccgggcgcttgccgatgtgaaa	Protospacer
**.** ***************** *  *  *

12. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 7, identity: 0.774

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
tgccgtgcaccgggcgcttgccgatgtgaaa	Protospacer
**.** ***************** *  *  *

13. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NC_023600 (Mycobacterium phage Jolie1, complete genome) position: , mismatch: 7, identity: 0.774

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
tggagaccaccgggcgcgtgccgttcatccc	Protospacer
**  *. ********** ********* ** 

14. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NC_022061 (Mycobacterium phage KayaCho, complete genome) position: , mismatch: 7, identity: 0.774

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
tggagaccaccgggcgcgtgccgttcatccc	Protospacer
**  *. ********** ********* ** 

15. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.774

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
tggagaccaccgggcgcgtgccgttcatccc	Protospacer
**  *. ********** ********* ** 

16. spacer 5.1|3485520|31|NZ_CP018139|PILER-CR matches to NZ_AP017899 (Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence) position: , mismatch: 8, identity: 0.742

cttccccgttggccttgacggtggtgtagag	CRISPR spacer
cttccgcgttggccttgagggtgccgatgtt	Protospacer
***** ************ **** .*  *  

17. spacer 5.1|3485520|31|NZ_CP018139|PILER-CR matches to NZ_CP017300 (Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence) position: , mismatch: 8, identity: 0.742

cttccccgttggccttgacggtggtgtagag	CRISPR spacer
cgagtcggttggccttggcgttggtgtagat	Protospacer
*   .* **********.** ********* 

18. spacer 5.1|3485520|31|NZ_CP018139|PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 8, identity: 0.742

cttccccgttggccttgacggtggtgtagag	CRISPR spacer
cgagtcggttggccttggcgttggtgtagat	Protospacer
*   .* **********.** ********* 

19. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 8, identity: 0.742

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
gggcgatcctcggggtcaccgcccattggag	Protospacer
.***********.******** ** .  ** 

20. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NZ_CP014797 (Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence) position: , mismatch: 8, identity: 0.742

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatcctcgcggccaccggcatcggcgt	Protospacer
************ **.******* .**  ..

21. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.742

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
cctcgggcagcaggcgcttgccgttccacac	Protospacer
. ******* *.************** .*  

22. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 8, identity: 0.742

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
tgtcgggcaccgggcggtcgccgacaatacc	Protospacer
**************** *.**** . *  * 

23. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NC_005342 (Burkholderia phage Bcep43, complete genome) position: , mismatch: 8, identity: 0.742

-tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
gcatc-agcaccgggcgcttgccgtcgagcag	Protospacer
 ..** .******************. *** .

24. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NC_004333 (Burkholderia phage Bcep781, complete genome) position: , mismatch: 8, identity: 0.742

-tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
gcatc-agcaccgggcgcttgccgtcgagcag	Protospacer
 ..** .******************. *** .

25. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to AY368235 (Burkholderia cepacia phage Bcep43, complete genome) position: , mismatch: 8, identity: 0.742

-tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
gcatc-agcaccgggcgcttgccgtcgagcag	Protospacer
 ..** .******************. *** .

26. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to AF543311 (Burkholderia cepacia phage Bcep781, complete genome) position: , mismatch: 8, identity: 0.742

-tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
gcatc-agcaccgggcgcttgccgtcgagcag	Protospacer
 ..** .******************. *** .

27. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NZ_CP018001 (Rhizobium sp. Y9 plasmid pY9, complete sequence) position: , mismatch: 9, identity: 0.71

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatcctccaggtgaccggcatgccggt	Protospacer
*********** **** ****** .  .*..

28. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NZ_CP041206 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-3, complete sequence) position: , mismatch: 9, identity: 0.71

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatcctgcaggtcaccggcatgccggt	Protospacer
**********  *********** .  .*..

29. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NC_022536 (Rhizobium sp. IRBG74 plasmid IRBL74_p, complete sequence) position: , mismatch: 9, identity: 0.71

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatcctccaggtgaccggcatgccggt	Protospacer
*********** **** ****** .  .*..

30. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 9, identity: 0.71

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatcctccaggtgaccggcatgccggt	Protospacer
*********** **** ****** .  .*..

31. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 9, identity: 0.71

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatccttcaggtcaccggcatgccgct	Protospacer
**********. *********** .  .* .

32. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NZ_CP029209 (Nitratireductor sp. OM-1 plasmid pOM-1, complete sequence) position: , mismatch: 9, identity: 0.71

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatcctcgacttcaccggcatcagctg	Protospacer
*************  ******** .*.    

33. spacer 5.2|3485581|31|NZ_CP018139|PILER-CR matches to NZ_CP054030 (Rhizobium sp. JKLM19E plasmid pPR19E03) position: , mismatch: 9, identity: 0.71

aggcgatcctcgaggtcaccggccccgtgac	CRISPR spacer
aggcgatcctgcaggtcaccggcatgccgct	Protospacer
**********  *********** .  .* .

34. spacer 5.4|3485703|31|NZ_CP018139|PILER-CR matches to NZ_CP035710 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence) position: , mismatch: 9, identity: 0.71

tgtcgggcaccgggcgcttgccgttcagcca	CRISPR spacer
gcaccagcaccgtgcccttgccgttcagcag	Protospacer
   * .****** ** ************* .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 253431 : 323578 58 Micromonas_pusilla_virus(12.5%) tRNA,protease,plate,tail NA
DBSCAN-SWA_2 3134580 : 3143576 9 Planktothrix_phage(14.29%) NA NA
DBSCAN-SWA_3 3189823 : 3196762 6 Enterobacteria_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage