CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP017930	Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-114	0 crisprs	csa3,RT	0	0	1
NZ_CP017932	Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-76, complete sequence	0 crisprs	NA	0	0	1
NZ_CP017929	Klebsiella oxytoca strain CAV1015 plasmid pKPC_UVA02, complete sequence	0 crisprs	DEDDh,csa3	0	0	1
NZ_CP017928	Klebsiella oxytoca strain CAV1015 chromosome, complete genome	4 crisprs	cas3,RT,DEDDh,DinG,csa3,WYL	1	2	10
NZ_CP017931	Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-111, complete sequence	0 crisprs	DEDDh	0	0	1
NZ_CP017933	Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-12, complete sequence	0 crisprs	NA	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1442 : 54331

uncultured_Caudovirales_phage(28.57%)

transposase,integrase

attL 2116:2130|attR 43420:43434

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000050481.1\|1442_2984_+\|transposase	IS91 family transposase	NA	NA	NA	NA
2116:2130	attL	NA	NA	NA	NA
WP_003833285.1\|4290_4743_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_012695489.1\|4784_5429_-	quinolone resistance pentapeptide repeat protein QnrB2	NA	NA	NA	NA
WP_000259031.1\|5919_6759_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|7163_8705_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_002008781.1\|8970_9471_+	hypothetical protein	A0A1V0SB21	Catovirus	3.3e-10	31.7
WP_000019304.1\|9470_10040_+	trimethoprim-resistant dihydrofolate reductase DfrA19	A0A1V0SD48	Indivirus	3.5e-08	27.2
WP_000845039.1\|10642_11656_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001082319.1\|11813_12617_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480968.1\|12616_13453_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_004248792.1\|13633_14425_+	SprT-like domain-containing protein	NA	NA	NA	NA
WP_000057569.1\|14439_14781_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|15236_15941_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001572372.1\|16106_16583_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_001572373.1\|16659_18279_-	phosphoethanolamine--lipid A transferase MCR-9.1	NA	NA	NA	NA
WP_072196614.1\|18467_19436_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-184	98.8
WP_004248839.1\|19474_20821_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	8.8e-18	26.6
WP_000723070.1\|21038_21473_+	hypothetical protein	NA	NA	NA	NA
WP_001572377.1\|21730_22846_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000019951.1\|22968_23241_+	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000193207.1\|23706_24525_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001371952.1\|24521_25727_+	hypothetical protein	NA	NA	NA	NA
WP_000121164.1\|25790_25994_-	hypothetical protein	NA	NA	NA	NA
WP_000078513.1\|26006_27326_-	DUF1173 family protein	NA	NA	NA	NA
WP_000220758.1\|27348_27516_-	hypothetical protein	A0A2D2W2Z9	Escherichia_phage	7.3e-07	50.9
WP_000833380.1\|27576_29004_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
WP_000464825.1\|29218_29734_+	thermonuclease family protein	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
WP_000975181.1\|29736_30633_+	hypothetical protein	NA	NA	NA	NA
WP_001005009.1\|30680_30995_+	hypothetical protein	NA	NA	NA	NA
WP_000637193.1\|31068_31326_+	hypothetical protein	NA	NA	NA	NA
WP_001371914.1\|32312_32510_+	hypothetical protein	NA	NA	NA	NA
WP_000864986.1\|32650_32926_+	hypothetical protein	NA	NA	NA	NA
WP_000927306.1\|33417_34896_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	7.3e-199	74.4
WP_001066652.1\|34914_35742_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.9e-43	37.2
WP_000065802.1\|35801_36227_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.6e-50	70.7
WP_000922628.1\|36239_37529_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	9.9e-168	71.4
WP_000941305.1\|37574_37895_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-20	53.7
WP_000130816.1\|37981_38686_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	8.8e-86	72.9
WP_000125668.1\|38718_40122_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_022652343.1\|40341_41310_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	3.7e-183	98.1
WP_012695467.1\|41331_41916_-	MFS transporter	NA	NA	NA	NA
WP_021243026.1\|41993_43151_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_012695469.1\|43344_44238_+	LysR family transcriptional regulator	NA	NA	NA	NA
43420:43434	attR	NA	NA	NA	NA
WP_012695470.1\|44374_45190_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	7.4e-161	98.2
WP_013815099.1\|45350_46319_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-185	99.1
WP_001567369.1\|46796_47429_+	hypothetical protein	NA	NA	NA	NA
WP_001567368.1\|47457_48861_-\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_003026803.1\|49061_49544_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003026799.1\|49531_49798_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_004206660.1\|50242_50473_-	hypothetical protein	NA	NA	NA	NA
WP_004213596.1\|50486_50690_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_004206662.1\|50750_51242_-	hypothetical protein	NA	NA	NA	NA
WP_176678774.1\|51663_52632_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-184	99.4
WP_077257929.1\|53362_54331_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	6.3e-183	97.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017928

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017928_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017928_1

1852747-1852846

Orphan

Consensus_repeat	Method
CCCGCCAAACGGTCAGAATGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017928_1

>merge|NZ_CP017928|1|1852747-1852846|CRISPRCasFinder
CCCGCCAAACGGTCAGAATGAGCGCAATCCCTGTAGCCCGGGCAAGGCGCGGCCCTACCGCGCCGCTCCCGGGACTACCCGCCGAACGGTCAGAATGAGC

>NZ_CP017928|1|1|1852747-1852846|CRISPRCasFinder
CCCGCCAAACGGTCAGAATGAGC	GCAATCCCTGTAGCCCGGGCAAGGCGCGGCCCTACCGCGCCGCTCCCGGGACTA
CCCGCCGAACGGTCAGAATGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017928.1\|WP_004102828.1\|1841648_1842854_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NZ_CP017928.1\|WP_004113539.1\|1846254_1847202_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_CP017928.1\|WP_097365455.1\|1850668_1852690_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP017928.1\|WP_017145715.1\|1848267_1849293_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
NZ_CP017928.1\|WP_004102849.1\|1854627_1855665_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP017928.1\|WP_004102840.1\|1847218_1848271_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP017928.1\|WP_004102846.1\|1852869_1853658_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213260
NZ_CP017928.1\|WP_004102842.1\|1849289_1850111_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP017928.1\|WP_023321155.1\|1857789_1858875_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|238527
NZ_CP017928.1\|WP_004102852.1\|1856647_1857793_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP017928.1\|WP_023321156.1\|1859020_1859914_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP017928.1\|WP_004102837.1\|1845358_1846258_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP017928.1\|WP_023329806.1\|1860619_1862200_+\|rhodanese-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|238793
NZ_CP017928.1\|WP_004102832.1\|1843660_1844428_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP017928.1\|WP_004102858.1\|1860021_1860618_+\|cysteine-dioxygenase	unknown	unknown	gnl\|CDD\|227840
NZ_CP017928.1\|WP_004102851.1\|1855661_1856636_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270276
NZ_CP017928.1\|WP_024274309.1\|1862387_1863791_-\|DUF1996-domain-containing-protein	unknown	unknown	gnl\|CDD\|370451
NZ_CP017928.1\|WP_004102835.1\|1844492_1845263_-\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP017928.1\|WP_004102830.1\|1842954_1843677_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP017928.1\|WP_023321154.1\|1853651_1854647_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673

Protein	Function_ID	Function_description	E-value
NZ_CP017928.1\|WP_004102828.1\|1841648_1842854_+\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.91881e-59
NZ_CP017928.1\|WP_004113539.1\|1846254_1847202_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.2762e-43
NZ_CP017928.1\|WP_097365455.1\|1850668_1852690_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.09967e-101
NZ_CP017928.1\|WP_017145715.1\|1848267_1849293_-\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	6.46175e-71
NZ_CP017928.1\|WP_004102849.1\|1854627_1855665_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	9.73109e-28
NZ_CP017928.1\|WP_004102840.1\|1847218_1848271_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	6.48952e-69
NZ_CP017928.1\|WP_004102846.1\|1852869_1853658_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.74044e-107
NZ_CP017928.1\|WP_004102842.1\|1849289_1850111_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.25898e-118
NZ_CP017928.1\|WP_023321155.1\|1857789_1858875_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|238527	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).	2.57981e-91
NZ_CP017928.1\|WP_004102852.1\|1856647_1857793_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	7.19673e-51
NZ_CP017928.1\|WP_023321156.1\|1859020_1859914_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24752e-34
NZ_CP017928.1\|WP_004102837.1\|1845358_1846258_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.91146e-47
NZ_CP017928.1\|WP_023329806.1\|1860619_1862200_+\|rhodanese-homology-domain-containing-protein	gnl\|CDD\|238793	cd01535, 4RHOD_Repeat_4, Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.	9.73253e-65
NZ_CP017928.1\|WP_004102832.1\|1843660_1844428_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.0052e-77
NZ_CP017928.1\|WP_004102858.1\|1860021_1860618_+\|cysteine-dioxygenase	gnl\|CDD\|227840	COG5553, COG5553, Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only].	1.57119e-57
NZ_CP017928.1\|WP_004102851.1\|1855661_1856636_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270276	cd13558, PBP2_SsuA_like_2, Putative substrate binding domain of sulfonate binding protein, the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.56565e-104
NZ_CP017928.1\|WP_024274309.1\|1862387_1863791_-\|DUF1996-domain-containing-protein	gnl\|CDD\|370451	pfam09362, DUF1996, Domain of unknown function (DUF1996). This family of proteins are functionally uncharacterized.	2.22315e-33
NZ_CP017928.1\|WP_004102835.1\|1844492_1845263_-\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.11621e-98
NZ_CP017928.1\|WP_004102830.1\|1842954_1843677_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.94994e-153
NZ_CP017928.1\|WP_023321154.1\|1853651_1854647_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	7.95035e-39

>NZ_CP017928.1|WP_097365455.1|1850668_1852690_+|TonB-dependent-siderophore-receptor
MTVVADGSRQSATNGYQPVNTSTATLTSMPMLDIPQVVNTVSEQVLQDQHATNLDEALYNVANVVQTNTLGGTQDAFTRRGFGANRDGSIMTNGLRTVLPRSFTAATERVEVLKGPASTLYGILDPGGLINVVTKRPERTFGGSVSATSTSFGGGTGRFDVTGPIDGTPLAYRVIGEYQHEDYWRNFGKEKSSFINPSLTWFGERATVNVSYSHRNYSTPFDRGTIFDLNTGHAVNVDRKTRFDEPFNITDGYSDLAQLNAEYRLSDAWTARFDYSYSQDHYNDDQARVMAYDSATGNLTRRVDATHGSTQKMHSSRADLQGNVVIGGFYNEILTGLAYENYDLLRTDMIRCKNVKGFNIYNPVYGTVGKCSSASASDSDQRIQQESYAGYVQDALYLTDKWIAVAGVRYQYYTQYAGKGRPFNVNTDSSDQKWTPKAGLVYKLTPSVSLFGNVAQSFMPQSSIASYIGNLPPEESTAYELGAKFELFNGVTANIALFDIDKRNVLYTESVGDETVAKTAGKVRSRGVEVDVAGSLTDNLSVIASYGYTDAKVTDDPDYKGKPLPNVPKHTGSLFLSYDIHNVYDSNTLTVGGGGRAVSKRSGTNGADYYLQGYAVADVFAAYKMKLQYPVTLQVNVKNLFDKTYYTSSIGTNNLGNQIGDPREVQFTVKMDF
>NZ_CP017928.1|WP_004102842.1|1849289_1850111_-|ABC-transporter-ATP-binding-protein
MPQRVLPAEQGIVLDSLSAGYGQTLIIDNIHLTIPHGKMTVLAGANGSGKSTLLSTIARMLKPLGGCVRLDGEVIHQMPTREVSRRLGILPQSPLTPEGLTVFELVSRGRYPWQGLMRQWSQADERAVEEALRLTGTAEFAHLPVDSLSGGQRQRCWIAMALAQQTATILLDEPTTWLDLRYQVDILELLQTLTREHGRTVVTVLHDLNFAVNYADLLVFLKKGQIAGVINEQEICTPELIKNVFDVDVQMSLNPQTGKPFFMPFRAREEKAL
>NZ_CP017928.1|WP_017145715.1|1848267_1849293_-|iron-ABC-transporter-permease
MSASALLLQRRQSRPRLALVLLSLLLLGGSLVHLGLGARWIAPQTVLQALFHYDPRNFDHRIIVDLRLVRLAAALLTGAALGVAGLLLQTVIRNPLGEPHILGLNAGASLAVVATSALGISLGGVALARPLTAACGAALLFGGVMLLSSSGRGGVTPLRITLCGVALSAFASAVTAAILILDEQTLLAMRTWLAGDLAGLNWQTLCAALLPALAGLTIALIIAPRLNVLALGDKVALGLGVKIVQTRLLGLAAIALLCGSAVAVAGPIGFVGLVVPHAVRRLISEDIRLALPLAAPVGALVLLLADIAARTLAAPQELATGAMTALVGAPVFIVIAARFFK
>NZ_CP017928.1|WP_004102840.1|1847218_1848271_-|iron-ABC-transporter-permease
MKNAVRRAGFRPLTCGRWHILLRPAALNIAAVALLVILLLALFGLTRGSFPMPSGTLFHALLGGENVGEQQRFILFDIRLPRLFMALLCGAMLGLAGAAMQSITRNGLADPGLIGVKEGASIVVLALVLFFPAVGLVWRPLAGMLGGVLVALLVLALARDCSRPRFILIGIGVSWTLAAAVGIFMTTADVRDVQTAMIWLAGSLHAATWPLLVVAFCWALPGAMILFLTARAADVALLGDRTAIGLGVRLQQLTLLRFFAPVLLTSASVSCVGSLGFVGLMAPHMARFLLRGGQVALLCGSALIGALLVLVTDTIGRLAFAPLQIPAGIVIALVGCPFFIVLLWRRRDAL
>NZ_CP017928.1|WP_004113539.1|1846254_1847202_-|ABC-transporter-substrate-binding-protein
MRWFVSLLVLLAGVASAADTQTFTDDLGRTVTVPRHPQRIVSMHDLDITIPLIELGVPPVASHGRTRPDGSHFLRASAQLTGVDFDNSAIRFIGTADIDLEAVAAAKPDLIITEPSRHVSVEQLEKIAPTVSIDHLQGSAPRIYSKLAQLTGTQPRLLILERRYQAQIAQLKSIVDTQKIVVSVIQANNGKVTVHHAYHALGRVLRDAGFRFPPLIDNIPDGQRIDVSAEQLPALDADFVFATWRSDTGGRPQDELQAMESVMPGWCDFMRACRTGRYILLPREEVISNSYAALSLMVAQVQSHIAGRPLPEGLQ
>NZ_CP017928.1|WP_004102837.1|1845358_1846258_-|MurR/RpiR-family-transcriptional-regulator
MKTVVKREKGRVDLFGERFRARAHQLSPRLLAVVSYINENREAVLERTAMEIAAATNTSDATVVRAIQALGFAGLRELKQTMERWFGPSATSSEKMISTVSALSSDVNSSIDFVLDGHQRACEVLSRPANRAAVAQAVALLTDARQVGIFGIGASGILAEYTARLLSRIGLPSYVMNRTGFSLAEQLIGLQRGDVLIMMGQKSPHREGMTTLREARRLGIPTILLTQAVDSRFSQEAQVVIEVPRGGDNGRVPLHGTVLVCLEMIVLSVASTAPQKTVKSMKRINELHRAIGKSGGKRS
>NZ_CP017928.1|WP_004102835.1|1844492_1845263_-|basic-amino-acid-ABC-transporter-substrate-binding-protein
MVKNWMKACCLVAAMIGTAQAAQQTYVVGSGGTYRPFEFENSQKQLEGFDIDIIKAIAKAEGFDIKLVNTPWEGIFATLSTGDRDIIISGITITDKRKQMVDFSAPYFPAEQSIVVPADSKVTSLEALKNEKVGVVNSSTGDIVVSEVLGKNSTSIKRFDNTPLMLQELFEDGVSAAVGDVGVVKYYIKQHPEKQFKLVPDAKFERQYFGIAVAKGNSELQAKINAGLQKIVADGTYAKIYKTWFDENVPTLPAQQ
>NZ_CP017928.1|WP_004102832.1|1843660_1844428_-|amino-acid-ABC-transporter-permease
MTGFRWEIIEEYGPLFMDGALMTIKCTIICVILGTLWGLTLGLGRMAKAEHGVWKYVLRYLVQFPVRFYVSAFRGTPLFVQIMVVHFALVPLFINPRDGLLVTSGMMSADFARELRSNYGAFLSCIVAITLNAGAYVSEIFRAGIQSIDKGQMEASRALGMPWWKTMRQVILPQAFRRILPPLGNNAIAIVKDSSLASAIGLADLAYAARTVSGAYATYWEPYLTISLVYWVITFLLAQLVNRLEKRFGKSDSHS
>NZ_CP017928.1|WP_004102830.1|1842954_1843677_-|amino-acid-ABC-transporter-ATP-binding-protein
MIHIHNLHKRFGDSHVLRGISCDIKPQEVVCIIGPSGSGKSTFLRCMNALETVSEGEVEVNGYAAHDRATDLNKMRESVGMVFQRFNLFPHKTVLENLIMAPMSLRGMARAEATHLAEELLAKVGLSDKRDAWPSSLSGGQQQRVAIARALAMKPSIMLFDEPTSALDPELVGDVLEVMKNLASEGMTMVIVTHEMGFAREVADRVIFIDQGIIQEEGKPAQIFGAPTNPRTAAFLSKVL
>NZ_CP017928.1|WP_004102828.1|1841648_1842854_+|MFS-transporter
MFNPEQNRLAPTLAMIMAASLVGFITGYTVPLISLELAQQQIDTVYVGLLAALPPAGMMISSFLSPALCRRFEMGLLLSVSLVALAAATIASCLSFDMLHLLLPRLVTGLASGVIIVIGESWITGGAAGKNRATLTGIYASAFTGCQLAGPLLISAGEAWQSWTLLLVGVVTLACLLMLRHLPTGSRERLAERASWRSLGAFLPVLASGVFCFAFFDASILALLPLYGMDKGLNEVTAVLLVTVVLTGDAVFQAPLGWIADRFGIRRVHLTCAMVFCLALLALPFLLASYIQLIVGCLILGAAAGALYTLSLVRAGKTFSGQKLIMINALLGFFWSAGSVAGPVVSGLLISVSGYDGLLITLFVSGALFLLIQCLGKNEKALLADEREREEERDDIREAAQ
>NZ_CP017928.1|WP_004102846.1|1852869_1853658_-|ATP-binding-cassette-domain-containing-protein
MVTANATSQAASTGAAVSISHLHHAFTLGKRTVPVLENISLQLRPGESVALLGPSGCGKSTLLRLLAGLEPQQAGQIQIDEAAMGGPGPERILVFQDPTLYPWLTVRQNVLLGPQAQGKKGLEPKADALIARMGLQAFSEALPRQLSGGMAQRAALARALLNEPRLLLLDEPLGKLDSLTRISMQRELIALWQQQGYTSLLVTHDIEEALLLCDRVLIMSPRPGRIIAEFALPLAYPRHRDNPLLLQHRQDILRILGQGEDW
>NZ_CP017928.1|WP_023321154.1|1853651_1854647_-|ABC-transporter-permease-subunit
MSTFSPERALARPASGRPRWTEGWLAAALWMLGGLYTLAWPDAGRRWPFSEGWALAQFTLGGGLLVLALSYRYWRQRGTRLQHAGKWLALLPLLFALWEGLTAKTAFLPVPFFAPPQALIEVLHDDWPRLLDSLLHSLGLLGLGVLLGTSCGFISGLAIGWSQRIGYWVHPVLRLLGPVPSTALLPLCLFIFPSSFGASVFLIALSTWFPVTVLTWSGVIGIDKAWYDVARTLGASQRFLILRVAIPAALPNVFVGLFMGLGASFSVLIVAEMVGVKSGIGFYLQWAQGWAAYPNMYAALLVMALLCSGLISGLFMVRDRLLSWQRGGMQW
>NZ_CP017928.1|WP_004102849.1|1854627_1855665_-|ABC-transporter-substrate-binding-protein
MITSAFSRRRFLRLTGSLALAGASLPLWAHDMAAMASGEEHLALRLAQPYKIKLAINKSAVCLAPVAVAEQQKIFTKYNLDVEFVNFGNSTDVLLEAIATGKADAGVGMALRWLKALEQGFDVKLTAGTHGGCLNLLTAKNSPFGGLESLKGQTIGVTDMAGPDKNFFAILLKRHGIDPISDVQWKVYPADLLSVALDKREIAAISGSEPFSYRLLDTGKYQLIASNMTGDYARLSCCVLGVSGSLARDHKPAAAALTQAILEAHSYAAAHPESVAQSFLAHALNTNEAEVSGILHGQGHGHHAVGEAFVKELTQYAVDLQRVQVIKPGTDPHQFAESIYVNVFA
>NZ_CP017928.1|WP_004102851.1|1855661_1856636_-|ABC-transporter-substrate-binding-protein
MRRFNVTALGGAIMLLVLSGYAAAQERITLRIADQKGGMRSQLEAANALQNLPYEIKWAEFPAAAPLAEALNAGAVDAGIIGDAPLLFALANGAPVKAIAVDKSNPAGTAVLVSPGSALKSAADLKGKRIATGKGSIGHFVALKALEQAGISPKDVQWVFLGPVDAKVALLNGSVDAWATWEPYTTQLVKTAEGQILVSGKGLLPGNTFLAATDDTLKDPQKRAALQDYLNRLAGAERWAYANLDSYGKTLGEIIRFPADIARAQFANRQSQWQPLNAKTVAQQQSTADFYLANGLIRAKLDVTPTFDNGFSVPAAQAHAEATP
>NZ_CP017928.1|WP_004102852.1|1856647_1857793_-|acyl-CoA/acyl-ACP-dehydrogenase
MKHPATDEWARRLAEIRHLMAEQAASLDASGDFPRDNIDRLRQRGFLSLAVPLQYGGAGADLPRLQQAIAAIAWGEPATALIVCMQYLHHLRLAENENWSEPLRQRVFHDAVERGGLINSLRVEPELGSPARGGLPQTVATRRAEGWQINGHKIYTTGIEGLSWLAIWGRSDDAPPLVGTWLVPRESDGISVVKSWDHGGMRATGSHEVVLNNVQVAADHAVDVWAADAPPAPDAEQFRLFANRHTALLAAIYDSIARAARDWLVSWLGTRIPGSLGQPLSSLPRVQEKVGQIDGWLLVNRSLLEKAAQLGFSAIEANLAKVTITDNAIQAVNLALELTGNHGLSRQNPLERHYRNVLCGRVHTPQSDSAWLAAGKYAFQK
>NZ_CP017928.1|WP_023321155.1|1857789_1858875_-|LLM-class-flavin-dependent-oxidoreductase
MSIQFLGMIGHRLSSETIAPVGPIFDRDYIVRFAQTHEAAGFDRLLVGHWSDQPDGFLVTALAGLSTQKIGFLLAHRPGFVSPTLAARKFATLEHLLGGRLAVHIISGGNDAEQRRDGDYLDHDQRYARTDAFLETLRTVWTAEQPVDIANDFYQAEQAWSAIRPLQKPHIPLYFGGSSEAAIAVAGKHANVFALWGESLAQTEETIQRVRAEAAKHQREIDFSVSFRPIIAATEAEAWEKAEHILHVATERAAQSGDGFKAKPDSVGAQRLRATAAQGKVVDKRLWTGIAQLVGGGHNSTALVGTPEQVADALLDYYDLGVRNFLIRGFDPLNDAQEYGKALLPIAREKAALRAAAERAS
>NZ_CP017928.1|WP_023321156.1|1859020_1859914_-|LysR-family-transcriptional-regulator
MRIDDIDALLATVQFSSLNQAAEYLGITQSAITRRLQRLEQTLNVTLLERQTRPLTLTAAGHRVYEQCLSIKRETKKLYGLLDPEAEPHGILRLGVPQSVAEIALQPALTALRQQFPALRPQVTCGWSGLLQKRLESVELDGVLAMGPEQQRFAEGCGGRLLCPLDIAVIAAKSWRLHAGALRDCAEKGWVLNPDGCGLRAGLIRELQSQGLRLALNVETAGAQLQISLVAQGLGLGLVPRAALAASPWRDEVTILTLADFQPEVHLWLVHAQNLANLSQPLTFFAGKVVQQLNVSG
>NZ_CP017928.1|WP_004102858.1|1860021_1860618_+|cysteine-dioxygenase
MTAPRVEKLRQFIQDLDALHREFADEPALLDAVAQRLATLVKKDDWLPEEYTLPHPHHYQQYLLHADSGQRFSIVSFVWGPGQSTPIHDHRVWGAIGMLRGAEENQRYRLDERGQPVVSGVAERLSPGEVEKVSSRDGDIHRVSNALADSVSISIHVYGGNIGGVRRAVYTPEGLVKPFVSGYSNRHLPNIWDLSKDN
>NZ_CP017928.1|WP_023329806.1|1860619_1862200_+|rhodanese-homology-domain-containing-protein
MPICSYRPTAQLRQALLDGAELALIDVREEADFARSHPLFAANLPLSKMELDVFRRVPRLTTPITVYDGGEGLAERAVERLQSWGYQDVALLEGGLSGWQRSGGELFQDVNSPSKAFGELVESERHTPSLSAGEVKALLEGQQEVVVVDARRFDEYHTMNIPGSISVPGGELALRIEGLIPSPQATVIVNCAGRTRSIIGTQSLRNAGLPNPVYALRNGTIGWTLAGLDLERGQQRRYDADFRASVERATAVRQLAERAGVAFIDTATLQRWLRQPARTTYLFDVRSPEEYAAGHLPLSVSAPGGQLVQETDHFASVRGARIVLIADDAIRAPITASWLAQMGWEVAVLNDARPEDFSERGTPAAKVPPGPQAEEISPQQLAEQLRVPGTVVLDFTTSANYVARHIPGAYWLVRSQLRQALEVIPQGERYVVTCGSSLLARYAVPEVAALTGKPVQLLSGGTLAWIDAGLALEHGETHLATPRSDRYQRPYEGTDNSPAAMQAYLDWEFGLVEQLARDGTHGFTVL
>NZ_CP017928.1|WP_024274309.1|1862387_1863791_-|DUF1996-domain-containing-protein
MKLNPFALTLAPLLAAGAFSAHAGPQAHVVCAYHHTLGDDAIMMFGKPNQAMWHDFFGNTHTDAVSTYQTLRDQPETTCDNKADSSAYWAPSLKLPDGQVVAPAYQKTYYQTSKVEQHPLHPFPAGLELLAGDHHGSAPSSRITFLCANGNGYTNKADQICGLRKAGDAVQFNIGIQFPNCWDGVNLKPTHGHSNATYDVNGACPGDYPVKIPTVNMNVAYVLPQIKTLDTAKIQLSMDPVMDGDKRQERWGSIYTAHADFMNGWTVEAAHYMTERCMNKGIDCGSAVPYGFSTVEENALVDSTEPTVTHAAPENLVVSDNWKNGGRTHNPETMTLVKFPIPPLPQGQDASLFKYQLRIYGGKVETNGADQIFLYPASNDWSANSVTWNHRPSCNYSSDGVLYLNSKREYRTIDVDKAVRKALAEGKSEISWYIGGDRQGNRYHFDPAGSQQEPMLMLMGFKNTPEI

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Crispr_ID: NZ_CP017928_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017928_2

2530616-2530700

Orphan

Consensus_repeat	Method
CCCCGCTCGCGCGGGGAACTCTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017928_2

>merge|NZ_CP017928|2|2530616-2530700|CRISPRCasFinder
CCCCGCTCGCGCGGGGAACTCTCTGTCTGAGATTTTCCAGGGCCTGGCGCGCCCGGTTTATCCCCGCTCGCGCGGGGAACTCTCT

>NZ_CP017928|2|2|2530616-2530700|CRISPRCasFinder
CCCCGCTCGCGCGGGGAACTCTCT	GTCTGAGATTTTCCAGGGCCTGGCGCGCCCGGTTTAT
CCCCGCTCGCGCGGGGAACTCTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017928.1\|WP_004103805.1\|2535397_2536318_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP017928.1\|WP_004103784.1\|2518419_2519697_-\|D-arabinitol-transporter	unknown	unknown	gnl\|CDD\|162096
NZ_CP017928.1\|WP_047720876.1\|2519766_2521230_-\|xylulokinase	unknown	unknown	gnl\|CDD\|198374
NZ_CP017928.1\|WP_004103803.1\|2533732_2535076_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP017928.1\|WP_047720875.1\|2523777_2524779_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380498
NZ_CP017928.1\|WP_004114033.1\|2521239_2522607_-\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP017928.1\|WP_016809241.1\|2528811_2529612_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP017928.1\|WP_047720874.1\|2525816_2527424_+\|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212663
NZ_CP017928.1\|WP_047720872.1\|2531918_2533730_+\|adenine-deaminase	unknown	unknown	gnl\|CDD\|223933
NZ_CP017928.1\|WP_016809243.1\|2538806_2540840_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_CP017928.1\|WP_004114038.1\|2525036_2525786_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP017928.1\|WP_047720873.1\|2529608_2530382_-\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
NZ_CP017928.1\|WP_047720871.1\|2540976_2544714_+\|WGR-and-DUF4132-domain-containing-protein	unknown	unknown	gnl\|CDD\|379270
NZ_CP017928.1\|WP_004103788.1\|2522813_2523755_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|367868
NZ_CP017928.1\|WP_158414353.1\|2535164_2535314_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017928.1\|WP_004114049.1\|2536864_2537194_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017928.1\|WP_004103811.1\|2537545_2538655_-\|iron-sulfur-cluster-carrier-protein-ApbC	unknown	unknown	gnl\|CDD\|183270
NZ_CP017928.1\|WP_162556179.1\|2530871_2531798_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP017928.1\|WP_004103807.1\|2536487_2536805_+\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|227742
NZ_CP017928.1\|WP_004103793.1\|2527610_2528663_-\|class-I-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236431

Protein	Function_ID	Function_description	E-value
NZ_CP017928.1\|WP_004103805.1\|2535397_2536318_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.3122e-64
NZ_CP017928.1\|WP_004103784.1\|2518419_2519697_-\|D-arabinitol-transporter	gnl\|CDD\|162096	TIGR00897, Alpha-ketoglutarate_permease, polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP017928.1\|WP_047720876.1\|2519766_2521230_-\|xylulokinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
NZ_CP017928.1\|WP_004103803.1\|2533732_2535076_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	2.2792e-115
NZ_CP017928.1\|WP_047720875.1\|2523777_2524779_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380498	cd06274, PBP1_FruR, ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type 1 periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	6.31949e-106
NZ_CP017928.1\|WP_004114033.1\|2521239_2522607_-\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	4.56504e-136
NZ_CP017928.1\|WP_016809241.1\|2528811_2529612_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	1.64176e-160
NZ_CP017928.1\|WP_047720874.1\|2525816_2527424_+\|FGGY-family-carbohydrate-kinase	gnl\|CDD\|212663	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NZ_CP017928.1\|WP_047720872.1\|2531918_2533730_+\|adenine-deaminase	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	0
NZ_CP017928.1\|WP_004114038.1\|2525036_2525786_+\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	1.28131e-76
NZ_CP017928.1\|WP_047720873.1\|2529608_2530382_-\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	3.04913e-121
NZ_CP017928.1\|WP_047720871.1\|2540976_2544714_+\|WGR-and-DUF4132-domain-containing-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	4.22598e-62
NZ_CP017928.1\|WP_004103788.1\|2522813_2523755_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|367868	pfam04198, Sugar-bind, Putative sugar-binding domain. This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix pfam00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.	1.24536e-86
NZ_CP017928.1\|WP_016809243.1\|2538806_2540840_+\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_CP017928.1\|WP_004103811.1\|2537545_2538655_-\|iron-sulfur-cluster-carrier-protein-ApbC	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
NZ_CP017928.1\|WP_162556179.1\|2530871_2531798_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.72465e-38
NZ_CP017928.1\|WP_004103807.1\|2536487_2536805_+\|RcnB-family-protein	gnl\|CDD\|227742	COG5455, COG5455, Predicted integral membrane protein [Function unknown].	2.99189e-21
NZ_CP017928.1\|WP_004103793.1\|2527610_2528663_-\|class-I-fructose-bisphosphate-aldolase	gnl\|CDD\|236431	PRK09250, PRK09250, class I fructose-bisphosphate aldolase.	0

>NZ_CP017928.1|WP_047720873.1|2529608_2530382_-|hydroxyethylthiazole-kinase
MSDLLNPAHIAHLRHLFHCHSPLVHCMTNDVVQTFTANVLLAIGASPAMVIDPGEASQFAAIADALLINVGTLTVERAEAMRAAAHSATQAGKPWTLDPVAVGALTLRTEFCLELLALQPAAVRGNASEIMALAGMSGGGRGVDTTDTAAAALPAAQALARQLNTVVAVTGEVDYVTDGQRIRMVTGGDPLMTRVVGTGCALSAVVAAAAAMPGDRLENVAAACGLMKLAGGKAAQQGGPGSFTPAFLDALYAGGDL
>NZ_CP017928.1|WP_016809241.1|2528811_2529612_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQNTLGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLARYQIKNVVLDTVMLAKSGDPLLSASAVETLRQRLLPQVSLITPNLPEAAALLDAPHARTEQEMLEQGRALLGMGCGAVLMKGGHLDDAESPDWLFTREEERRFTAPRVQTKNTHGTGCTLSAALAALRPRYEDWGRTVAEAKGWLSAALAQADSLEVGHGIGPVHHFHAWW
>NZ_CP017928.1|WP_004103793.1|2527610_2528663_-|class-I-fructose-bisphosphate-aldolase
MTDITQLLGKDADTLLQHRCMTIPADQLYLPGADYVDRVMVDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPTEYDQTLYASVEQAFNMGAVAVGATIYFGSEQSRRQIEEISAAFERAHELGLVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKMAENNGGYKAVNFGYTDDRVYSKLTSDNPIDLVRYQLANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDGKVTIA
>NZ_CP017928.1|WP_047720874.1|2525816_2527424_+|FGGY-family-carbohydrate-kinase
MQSDTQHIIGVDVGSGSVRAGVFDLRGELLAHATREITLFRSAGSVVEQSSREIWQAVCYCIKTAVASAGVPPSSIAGIGFDATCSLVVIGDNDAPLAAGPSEDADRNIIVWMDHRATGQAEKINATGHAVLQYVGGKISPEMETPKILWLKENRPHIYQQARHFFDLPDYLTWRSTGDLARSVCTVTCKWTYLAHEQRWDASYFRQIGLEELADEDFVRIGQRIVDPGTPCGDGLCATAAEEMGLPIGTPVAVGMIDAHAGGIGTVGVLNGAVNNMAYVFGTSSCTMTTTQEAVFVPGVWGPYYSAMVPGFWLSEGGQSAAGAAIDQLLSFHPAAAEAKSLAKARGVPLPVYLADSVLAKIDNPSAAVKLADGLHVVPEFLGNRAPLADPQAKAIIAGLGMERDLDNLMALYVAGLCGIGYGLRQIIDAQKACGIRSENIVISGGAGQHPLVRQLLADACGVNVVSTESSEPVLLGSAILGAVAGHIAPSLPEAMKQFTRVDKTYRCVEQFSADHQRRYEAYKMLQHTARLIRE
>NZ_CP017928.1|WP_004114038.1|2525036_2525786_+|SDR-family-oxidoreductase
MNHSVSSMNTSLSGKVAAITGAASGIGLECARTLLGAGAKVVLIDREGEKLNKLVAELGENAFALQVDLMQADQVDNLLQGILQLTGRLDIFHANAGAYIGGPVAEGDPDVWDRVLHLNTNAAFRCVRSVLPHLIAQKSGDIIFTSSIAGVVPVIWEPIYTASKFAVQAFVHTTRRQVSQYGVRVGAVLPGPVVTALLDDWPKAKMDEALANGSLMQPIEVAESVLFMVTRSKNVTVRDIVILPNSVDL
>NZ_CP017928.1|WP_047720875.1|2523777_2524779_-|LacI-family-DNA-binding-transcriptional-regulator
MKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLRSKKSRVIGMIIPKYDNRYFGSVAERFEEMARERGLLPIITCTRRSPELELEAVKAMLSWQVDWVVATGATNPDKISALCQQAGVPTVNLDLPGTIAPSVISDNYGGAKALTHKILANSARRRGEIAPLTFIGGRSSDHNTSERLRGFHDAHREQGLSVPQANILAPGYSKGKVEACLQERFGTAKVPLQGIFVNSTISLEGVVRWLSQAGLTGSEQPPMGCFDWDPFVYLLGHDIDMVQQDVPAMLEAVFTIIDSGDAGQQRIEIPPLLMSSS
>NZ_CP017928.1|WP_004103788.1|2522813_2523755_+|cytochrome-c-biogenesis-protein-CcdA
MSKEDDIRLDQKVRAAWMYYIAGQNQSEIASQLGTSRPVVQRLIAAAKEEGIVSIGLHHPVANCLDYALLLQEKYRLIECNIVPAFSEESTLDSVSFGCYQLMARYLQDDKEKIIGLGSGLTLKKALQRIDFDSQNTRCVALISAMDADGQCNYYDDVPLLLTSKIKAKYYQWPAPRYAQTQEEYDMWCTSRLFRSVSAVARQADVIFVGIGPLGTQSPIFKDGFINQAQMDEVTAQGGIGEIMGRFIDAEGGVVDSEINRMITSYDIRQNQCPRIAVACGEYKRPAILAALKGGWINGLVTDEHTARWLLTR
>NZ_CP017928.1|WP_004114033.1|2521239_2522607_-|mannitol-dehydrogenase-family-protein
MNNQFTWLHIGLGSFHRAHQAWYLHRLIASGDKRWHIAAGNIRNDAEQVVQALAAQGGRYVLETVSPEGEREYEEITSIQKLLPWQAGLKPLINEGANPQTKVIAFTVTEGGYYLNTRHKLETSNPDLQADLAGECKTIYGTIARILEKRMADNAGPLTLLNCDNVRHNGERFHDGMVEFLQLTGKQAVIDWMAANTTCPNTMVDRITPRPASDLPARIKAQTGIDDSAPVMGETFIQWVVENNFRDERPNLEAVGVEMVASVIPYEEAKIRILNSSHSCIAWAGTLIGQQYIHESTLTDFIYAIADRYVTEDVIPCLGDNGIDLPTYRDVVLKRFTNPYIQDTNQRVAADGFSKIPAMIAPTLQECYQRGARPEATAMLPALFFVFMEQWHKGSLPYEYQDGILDAQAVHQMFEASDPLALYARDKALFGELAENADFLALMREKVAAVYTLIN
>NZ_CP017928.1|WP_047720876.1|2519766_2521230_-|xylulokinase
MYLGIDLGTSEVKALVIDENNEVIASHSAPLSIQRPHPHWSEQSPQSWWEATEYLMTTLREKCAQHWPAIKAIGLSGQMHGAVLLDAGGEVIRPAILWNDTRCAAECAELEERAPELHQVAGNLAMPGFTAPKLLWVRRHEPEHFQRTATVLLPKDYLRYRMTGKKVSDMSDAAGTLWLDVAKRDWSDSLLDKCGLSRSQMPTLVEGCEVSANLDPQVAERWGLNASVAVAGGGGDNAVSAIGVGAVSPGDAFISLGTSGVLFVVTDAYRPAPQSAVHAFCHVLPNLWHQMSVMLSAASCLQWFCRLTGTTEVALLEEIAELSEEEKAHAPFFLPYLSGERTPHNDPDARGMFWGMTHSSLRAQLGYAVLEGVSFGISDGLQVLKESGTQIEQCSLVGGGARSPFWAQLLADILDMPVVTHKGGETGGALGAARLACLAAGKPITAVCEKPEIWQTWRADPVRHQTLMRRYAQFKALYLNDLNYRQH
>NZ_CP017928.1|WP_004103784.1|2518419_2519697_-|D-arabinitol-transporter
MSINNKQWLGLPLNLLWGYIAIAVFMTGDGFELAFLSHYIKELGFSPAQASFAFTLYGLAAALSAWISGVVAEIITPLKTMMIGFVLWCVFHVLFLVFGLGHANYALILIFYGIRGFAYPLFLYSFIVAIIHNVKSDNASSAIGWFWAVYSIGIGVFGSYIPSFTIPHIGELGTLWLALAFCVTGGIIALASLRHIKTPHHMQNLTTREKFAELGRAATLLYTNRNILLSSMVRIINTLSLFGFAVIMPMMFVDELGFTTSEWLQVWAVFFFTTIFSNVLWGILGEKLGWMKVVRWFGCIGMAVSSLAFYYIPQHFGHNFAMALLPAIALGIFVAAFVPLAAVFPALEPKHKGAAISVYNLSAGMSNFLAPAIAVILLPFFSTIGVVIAYTALYVAAFFLCAFIRVEQPGFSHKEAPASEQVEFS
>NZ_CP017928.1|WP_162556179.1|2530871_2531798_-|LysR-family-transcriptional-regulator
MMTEPWQRLPALSLKQIQYFVTLAQLRHFTDTANRLAISQPALSSALRQIETVLGGKLVNRTASAVTLTELGAAILPHARRVLSVAQLAFQDMQQIVEAGGDGTVRIGLVPSVSSLLFPLLPQTLAQAFPRLRVEFHDQTNDALFCELQSGKIDFAVGAIDSSLPPELQVYPLREDPFVAVLHGGDPLAGQPHLPWKLLAGRDIAVFSKGNIQRLVGALAESHRLTLNTRYQVDYIETLYGLVRSRLAVAILPELYTTHLQDPALKVAQLQQPALTRTVALMRGPQPLPPLIEECFALLLSSLREVNL
>NZ_CP017928.1|WP_047720872.1|2531918_2533730_+|adenine-deaminase
MSSSAETRRRAVQAARGESPFDLLLTDAQIVDMATGDIREADVGIVGETIASVHPRGSRSDALERRSLAGCFLSPGLMDTHVHLESSHLPPERYAEIVLAQGTTAVFWDPHELANVLGVEGVRYAVAASRHLPLQVMVAAPSSVPSTPGLEMSGADFAGAEMETMLAWPEVCGVAEVMDMHGVLHGSERMQEIVQAGLNSGKLIEGHARGLSGADLQAYLAAGVTSDHELTSAADALEKLRAGLTIEIRGSHPYLLPDIVNALKTLPHLSSQITVCTDDVPPDMLLEKGGIIALLNLLIEHGLPATDVLRFATLNAAIRLQRNDLGLIAAGRRADLVVFDSLSRLNAQEVYVAGKLIARDGALLQPIPSAAGVTPPRDTLQMPPLSPDDFILRVGAIRHGVARLRHIRGARFTQWGEVEVQVRDGRVQIPEGFSLIWVKHRHGRHQATPQIALLEGWGELRGAIATSYSHDSHNLVVLGRDADEMALAANRLIESGGGMALSQQGKILAHVAMPIAGMLSDLPAPELAREFRQLRDLSAEVADWEPPYRVFKAIEGTCLACNAGPHLTDLGLTDGSTRQIVEPLIDCREIPEHTEHNNKHQGA
>NZ_CP017928.1|WP_004103803.1|2533732_2535076_+|NCS2-family-permease
MADNTLNSSAQGSWLERRFALYSRGSTLRTECLAGITGFLAAAYLLVVIPGLLAVGGMDKGAATTGTILVFVGGTLLMAFYANLPFIVGPGIGGSVLVGVTLAGSEGIGWQIGLGIACWSGILFFLLTKFGLREVVTRSVPQSIKLGLTASIGLFVAVLGFRNAGLVLANAKTNALMLGDFLSPGALVALCGLFLAIALQARKIPGSILWAILFATLVGIPMGVTRLPGSFIDMPHSLTPVLGQIDMLGALNIAFLPFLFVFFASEFFSTMGTTLAVGGEAGLLDEEGNMPHINRPFMVDSIAAAIGPWLGIPAATALIESSAAAEAGGKTGLTALSAAVMFLLMLLFTPVALMIPKEATAPALILIGLNMFSGLRKVDLANFTDGLPVLMMVMITLIANSFGTGIAGGLLFYVVIKTIAGKWREIPIGLWILAIPLVYYFATLVKH
>NZ_CP017928.1|WP_158414353.1|2535164_2535314_-|hypothetical-protein
MFPVHTLRLAGLRVHSNLRAGSPDRRASAASGNGVGVKHRRGFSPVALR
>NZ_CP017928.1|WP_004103805.1|2535397_2536318_-|LysR-family-transcriptional-regulator
MLRLEDLALFVRAAALSSFSDAAREAGLQPAQVSAAIKRLETTLNIRLFARSTRSLRLTPEGEAWLPYATQMLDTLHAGLQKIRTPDDEVRGTLQIAVPSDLGRNLLLRVFRGFRQRHPALRLRILFSDHRTDVFKDPVDVAFRYGDNDDASFISLPVAPDNRRVLVASPGWIAENGEPQTLEELARHNALTYVLRGRAFDRWPLSREGKVHHVQVSGTIVSDDAEVIRRLAIAGEGIAYKSELDVGDDIRAGRLQVLLPHYQGDVVPLNMICPHRKQLSPAVRLLYEAVKEACEAVNSSALSAGR
>NZ_CP017928.1|WP_004103807.1|2536487_2536805_+|RcnB-family-protein
MRKTKMMLLGVLLACTSGAWAATGDGIQKYELDGVTADFKQFHIGDTVPPLYLTPEYNIKQWQQRNLPAPDAGTRWTYMGGSYVLITETEGKILKIYDGEIFYHR
>NZ_CP017928.1|WP_004114049.1|2536864_2537194_-|hypothetical-protein
MNNIALIVKLRELLVIFMHSRTLPEKAADALRYCQENIPLADLPIGAYGEYCEIYEQIVFLSDDKSRTAPDDLLRSGGDLILSILMLYEQVAAYIAVEEFMHKQNRFNE
>NZ_CP017928.1|WP_004103811.1|2537545_2538655_-|iron-sulfur-cluster-carrier-protein-ApbC
MSSQSQAKSPERLRAMVAGTLANFQHPTLKHNLTTLKALHHVAWLDETVHIEIQMPFVWNSAFEALKEQCSAELLRITGAKAIDWKLTHSIATLQRVKNQPGINGVKNIIAISSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMKFGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAQKLAEKYHTQLLGQLPLHITLREDLDKGTPTVVARPESEFTETYRQLADRVAAQLYWQGEVIPGEIAFRAV
>NZ_CP017928.1|WP_016809243.1|2538806_2540840_+|methionine--tRNA-ligase
MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFDISYDNYHSTHSDENRELSELIYTRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRESEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDAASFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGMLSAELADPALYKTFTDAAASIGEAWDSREFGKAIREIMALADVANRYVDEQAPWVVAKQEGRDADLQAICTMGLNMFRVLMTWLKPVLPQLAARAEAFLNSELSWEAIQQPLLGHKVNAFKALYNRIEMKQVEALVEASKEEVKALSAPVTGPLADDPIQDTITFDDFAKVDMRIALIENAEFVDGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQALIGRLTVMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDSGAQPGQQVK
>NZ_CP017928.1|WP_047720871.1|2540976_2544714_+|WGR-and-DUF4132-domain-containing-protein
MKSFIYQDEKSHKFWAVEQQDNELHLSWGKVGTSGQSQIKTFADSATAAKAKQKLIGEKTRKGYAENTAAEKSPPQAVASQSNNRPWLADDAHIPLTEEIGWFAFPHRNRSRPFNTTPDGNQIWQRITRNDKAEFRPSDYHFTSPAWEQAYAELHQRIKHNQSTGSLLSEAALLGQMGYYSGDLIDLFVTQYGLETTVEIACHTLQVACKYDDDLKKIVVRSDFPVNETEYLPDWLPRLCHHLSLAPEEEWLRCVKKLIAAIPELSPAMQPFVALMLPERPDIANEIALRFAAEEIPAMAWLKMVVNAPSALITLEKYPLPPLYSHFLPYVATLIANQGMIGVSQLVNDLDEKEASTQLPELEATDYFTKWLAKTNHPDALKILILGAGNKNKRLGYLSKASQKYPHAAIAAYASLLTSYEDPIWRKALTVLISAEPARVEQVLPWIDAHAAETLTATRPHSDSSAEYASPETLPEILVSPPWLKQNQKSASPVFKLSILPVTSTLSLTPAITEELTGYDYSDYHCQFRYADLPPFESYHWEKVTEPFTPEQNFLWRLGFEKWQQLTPGTSQKVPIPQSAVTALQCADYDTLINEFHQYTGKQYSQWKLYLLAWMPREQALALLDALADEPHKGEEGILPIFGIDALPIFVRYLKHDRQSLWPFTPYCGTTDLALPMAQNFSRKKTLREDARSWLLEYPEHAIAGLLPVALGKACKDRDDAQQALRLLAENNHRSLITQIAQRYQQPEIIAALGAFLDAGDFHDFPTKIQPLPEFYQFALWRRPQLKSSGLPLPDNAMRYLGDMLNFPREVKLYAGLNTVKSICTPTSLANFAWDLFNAWIEAGGPSKANWAFTTLAFFGNDDTARALTPLIRAWPGESQHQRAALGLDILAEIGSDIALMLLNGIAKKIKFAALQENAQNKIKQIAEQRELTIAELEDRLAPDLGLDDNGTLVLDFGPRRFTVSFDEALKPFVCDESGRRLKDLPKPGKSDDEPRAAEAVSRYRQLKKDVRTIASQQIQRLETAMCLRRRWTAEQFRLFLVDHPLVRHLTRRLIWGVYSQENVLLACFRVAEDNSYSDAEDNPFSLPEGQIGLPHVLEISAEDAAAFGQLYADYELLPPFRQLDRNHYRLTESENRATELTRWRGRQCQAGRIVGLERKGWQRIEDGGSICGMFKPAASGDMVLEVEPFSLLYGETTYDELIPFETVKIVTKGDIDYGKPTFAFATLDAIAASELINDIESLFD

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Crispr_ID: NZ_CP017928_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017928_3

3202350-3202452

Orphan

Consensus_repeat	Method
TGGCAAACGCCAGGGTGACAAAAGTCGTCGTAGCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017928_3

>merge|NZ_CP017928|3|3202350-3202452|CRISPRCasFinder
TGGCAAACGCCAGGGTGACAAAAGTCGTCGTAGCCCGGACAGATGCGCAGCATCGCCTCCGGGAATGGCAAACGCCAGGGTGACAAAAGTCGTCGTAGCCCGG

>NZ_CP017928|3|3|3202350-3202452|CRISPRCasFinder
TGGCAAACGCCAGGGTGACAAAAGTCGTCGTAGCCCGG	ACAGATGCGCAGCATCGCCTCCGGGAA
TGGCAAACGCCAGGGTGACAAAAGTCGTCGTAGCCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017928.1\|WP_004104842.1\|3202527_3203013_-\|hydrogenase-maturation-peptidase-HycI	unknown	unknown	gnl\|CDD\|236925
NZ_CP017928.1\|WP_004104858.1\|3209898_3210348_-\|formate-hydrogenlyase-regulator-HycA	unknown	unknown	gnl\|CDD\|182298
NZ_CP017928.1\|WP_014839316.1\|3204731_3206441_-\|formate-hydrogenlyase-subunit-HycE	unknown	unknown	gnl\|CDD\|225800
NZ_CP017928.1\|WP_004104848.1\|3204179_3204722_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|183492
NZ_CP017928.1\|WP_017145507.1\|3193761_3195981_-\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
NZ_CP017928.1\|WP_004114728.1\|3188198_3189743_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	unknown	unknown	gnl\|CDD\|235331
NZ_CP017928.1\|WP_023321498.1\|3209207_3209816_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319876
NZ_CP017928.1\|WP_004104852.1\|3206458_3207382_-\|respiratory-chain-complex-I-subunit-1-family-protein	unknown	unknown	gnl\|CDD\|223723
NZ_CP017928.1\|WP_004104859.1\|3210556_3210901_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|179630
NZ_CP017928.1\|WP_004104829.1\|3189930_3191376_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	unknown	unknown	gnl\|CDD\|235475
NZ_CP017928.1\|WP_017145506.1\|3207384_3209211_-\|formate-hydrogenlyase-subunit-3	unknown	unknown	gnl\|CDD\|181206
NZ_CP017928.1\|WP_024274606.1\|3196655_3197669_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
NZ_CP017928.1\|WP_023321494.1\|3191372_3192506_+\|NADH:flavorubredoxin-reductase-NorW	unknown	unknown	gnl\|CDD\|179902
NZ_CP017928.1\|WP_017145469.1\|3201178_3202201_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP017928.1\|WP_004104839.1\|3199394_3200819_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|182112
NZ_CP017928.1\|WP_004104835.1\|3197925_3199368_+\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|182081
NZ_CP017928.1\|WP_004104844.1\|3203005_3203416_-\|formate-hydrogenlyase-maturation-HycH-family-protein	unknown	unknown	gnl\|CDD\|185042
NZ_CP017928.1\|WP_004104846.1\|3203412_3204180_-\|NADH-quinone-oxidoreductase-subunit-B-family-protein	unknown	unknown	gnl\|CDD\|225799
NZ_CP017928.1\|WP_004104831.1\|3192736_3193750_-\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225911
NZ_CP017928.1\|WP_004104833.1\|3195993_3196521_-\|electron-transport-protein-HydN	unknown	unknown	gnl\|CDD\|182382

Protein	Function_ID	Function_description	E-value
NZ_CP017928.1\|WP_004104842.1\|3202527_3203013_-\|hydrogenase-maturation-peptidase-HycI	gnl\|CDD\|236925	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional.	2.04699e-107
NZ_CP017928.1\|WP_004104858.1\|3209898_3210348_-\|formate-hydrogenlyase-regulator-HycA	gnl\|CDD\|182298	PRK10198, PRK10198, formate hydrogenlyase regulator HycA.	8.38486e-93
NZ_CP017928.1\|WP_014839316.1\|3204731_3206441_-\|formate-hydrogenlyase-subunit-HycE	gnl\|CDD\|225800	COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy production and conversion].	0
NZ_CP017928.1\|WP_004104848.1\|3204179_3204722_-\|4Fe-4S-binding-protein	gnl\|CDD\|183492	PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur subunit; Provisional.	2.64559e-118
NZ_CP017928.1\|WP_017145507.1\|3193761_3195981_-\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP017928.1\|WP_004114728.1\|3188198_3189743_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	gnl\|CDD\|235331	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR.	0
NZ_CP017928.1\|WP_023321498.1\|3209207_3209816_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319876	cd10554, HycB_like, HycB, HydN and similar proteins. This family includes HycB, the FeS subunit of a membrane-associated formate hydrogenlyase system (FHL-1) in Escherichia coli that breaks down formate, produced during anaerobic fermentation, to H2 and CO2. FHL-1 consists of formate dehydrogenase H (FDH-H) and the hydrogenase 3 complex (Hyd-3). HycB is thought to code for the [4Fe-4S] ferredoxin subunit of hydrogenase 3, which functions as an intermediate electron carrier protein between hydrogenase 3 and formate dehydrogenase. HydN codes for the [4Fe-4S] ferredoxin subunit of FDH-H; a hydN in-frame deletion mutation causes only weak reduction in hydrogenase activity, but loss of more than 60% of FDH-H activity. This pathway is only active at low pH and high formate concentrations, and is thought to provide a detoxification/de-acidification system countering the buildup of formate during fermentation.	4.73679e-61
NZ_CP017928.1\|WP_004104852.1\|3206458_3207382_-\|respiratory-chain-complex-I-subunit-1-family-protein	gnl\|CDD\|223723	COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion].	5.15377e-99
NZ_CP017928.1\|WP_004104859.1\|3210556_3210901_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|179630	PRK03681, hypA, hydrogenase/urease nickel incorporation protein HypA.	5.96245e-65
NZ_CP017928.1\|WP_004104829.1\|3189930_3191376_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	gnl\|CDD\|235475	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional.	0
NZ_CP017928.1\|WP_017145506.1\|3207384_3209211_-\|formate-hydrogenlyase-subunit-3	gnl\|CDD\|181206	PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed.	0
NZ_CP017928.1\|WP_024274606.1\|3196655_3197669_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	1.32993e-119
NZ_CP017928.1\|WP_023321494.1\|3191372_3192506_+\|NADH:flavorubredoxin-reductase-NorW	gnl\|CDD\|179902	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW.	0
NZ_CP017928.1\|WP_017145469.1\|3201178_3202201_-\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.0208e-42
NZ_CP017928.1\|WP_004104839.1\|3199394_3200819_+\|6-phospho-beta-glucosidase	gnl\|CDD\|182112	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional.	0
NZ_CP017928.1\|WP_004104835.1\|3197925_3199368_+\|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC	gnl\|CDD\|182081	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional.	0
NZ_CP017928.1\|WP_004104844.1\|3203005_3203416_-\|formate-hydrogenlyase-maturation-HycH-family-protein	gnl\|CDD\|185042	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional.	4.05661e-90
NZ_CP017928.1\|WP_004104846.1\|3203412_3204180_-\|NADH-quinone-oxidoreductase-subunit-B-family-protein	gnl\|CDD\|225799	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion].	2.60197e-85
NZ_CP017928.1\|WP_004104831.1\|3192736_3193750_-\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	1.97387e-144
NZ_CP017928.1\|WP_004104833.1\|3195993_3196521_-\|electron-transport-protein-HydN	gnl\|CDD\|182382	PRK10330, PRK10330, electron transport protein HydN.	7.56941e-113

>NZ_CP017928.1|WP_017145469.1|3201178_3202201_-|IS110-family-transposase
MNIKRIGLDLAKNVFQIHAVDHREHVVLRKTLRRDRMAAFFTQLSPCLIGIEACGSAHYWARELTRMGHTVRIIPPRLVKPYLKGQKNDANDAEAICEAVSRPGMRFVAIRTERQQTLQAEHRVRARLIRARTALSNEIRGLLGEFGVVLPAGIAQLRKALPEIVSQQVQWDECFIRLLCELSEELQGLDERVARHDRRLQQSARDDIRIKRLLAIEGMGPVVASALVAAVGDGRQFRSGREMAAYLGLVPRQHSSGGKARLGHISKRGDRYVRTLIIHGARAVLNACQNKTDRRSQWLQGVSERRNRNIATVALANKNARIAWALLSREEDYHGIQVTG
>NZ_CP017928.1|WP_004104839.1|3199394_3200819_+|6-phospho-beta-glucosidase
MATFPQGFLWGGALAANQSEGAYLEGGKGLTTVDMIPHGAHRLAVKLGQEKRFALRDDEFYPSHEAIDFYHRYKEDIALMAEMGFSVFRTSIAWSRLFPEGDELEPNPEGIAFYRSLFEECKKHRIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFTRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQEQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWMALEKDRENLFFIDVQARGAYPVWAARVFREKGVTIAKESGDDEILRHTVDFVSFSYYASRCASAEMNAGNTSAANIVKSLKNPHIKASEWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGARDEVEANGEINDDYRISYLREHIKAMGDAIEDGIPVIGYTSWGCIDLVSASTGEMSKRYGFVYVDRDDAGRGTLARKRKKSFWWYKKVIASNGEDLA
>NZ_CP017928.1|WP_004104835.1|3197925_3199368_+|PTS-cellobiose/arbutin/salicin-transporter-subunit-IIBC
MSKNYAALAQQIIAAIGGADNVAAVTHCMTRLRFVVKDNERVDSATLKGLKGVLGVVRSDNQCQVIVGNTVSQAYREVVALLPGDLRPAEPQGKPPITLKRIGAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMTGALPKGAPTLTILTVIGDGAFFFLPLMVAASAAVKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLSILLIGPLGIWIGSAISALVYTIHSYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSEIGANLSLGGSSLAVAWKTKNPELRQTALAAAASAILAGISEPALYGVAVRLKRPLIASLISGFICGAVAGIAGLASHSMAAPGLFTSVQFFDPANPMTIVWVFGVMALAVVLSFVLTLMLGFEDIPQEEAAADARQRQAGTQASHA
>NZ_CP017928.1|WP_024274606.1|3196655_3197669_-|LacI-family-DNA-binding-transcriptional-regulator
MATMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVAESGYRPNLLARNLATKKTQTLGLVVTNTLYHGVYFSELLYHVARMTEDKGRQLILADGKHSAEEEREAIEYLLDLRCDAIIIYPRFLSVDEMDEIIENHERPIMVLNRRLRRNASHCVWSDQKASAMMAVEKLIALGHREIAFITGSLDSPTGVERLSGYKDALARHGIALNNDLIVEGRWTPETGAAGVETLRQRRVGYSALVASNDDMAVGAMKQLHQIGVKVPEQVSVVGFDDIVLAPYMVPALSSVKVPVTEMIKESINRLIFMLDGGDFKFQQLFPGELIERDSVVPGPHT
>NZ_CP017928.1|WP_004104833.1|3195993_3196521_-|electron-transport-protein-HydN
MNRFIIADASKCIGCRTCEVACVVSHQENQDCAALTPKSFLPRIHVIKGVNVSTATACRQCEDAPCANVCPNGAISRDQGFVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRHSGAGLNVMAEKAEANKCDLCHHREEGPACMDACPTHALICVDRNKLEQMNIEKRRRTALAW
>NZ_CP017928.1|WP_017145507.1|3193761_3195981_-|carbamoyltransferase-HypF
MNGVQIRIRGKVQGVGFRPFVWQLAQQLGLRGDVCNDGDGVLVRLVGGDAPFLAALTRRCPPLARIDSAAAAPFVWDAAPPGFTIRQSGAGSMRTQIVPDAATCPACLAEMNNPQERRYRYPFINCTHCGPRFTIIRAMPYDRPLTSMSPFPLCTSCAAEYGDPADRRFHAQPVACAECGPRLEWRGPQAHSFGEAALEAATARLMAGDIVAVKGLGGFHLLCDAGNPEAVARLRARKHRPAKPLAVMLATTAGLDEPAVTLLTSPAAPIVLLDKTQVAGLCDQIAPGLAEVGGMLPSNPLQHLLSQALARPLVMTSGNLSGRPPALTNAEALADLAGIADGFLLHNREIVQRMDDSVVRQSGEMLRRARGYVPDALALPPGFHDAPPLLALGADMKNTFCLLRGDEAVLSQHFGDLDEEGVEAQWRQALRLMQEIYAFTPQRVVADAHPGYRASRWAASLMLPVERVLHHHAHAAACLAEHRWPLEGGDVIALTLDGIGMGENGELWGGECLRVNYRECEHLGGLPSVALPGGDLAARQPWRNLLAHCLAFVPEWQNYADTAALRQQNWPLLARAIERGINAPQASSCGRLFDAVACALGCAPLALSYEGEAACRLEALAATCEGVDHPVTLPWREGKLDLATFWRQWLSWQAGPAQKAWAFHDALARGLAAMMRDCANARNIHTLAFGGGVLHNRLLTARLTFYLADFTLLFPQQLPAGDGAIALGQAIVAAARLQA
>NZ_CP017928.1|WP_004104831.1|3192736_3193750_-|HoxN/HupN/NixA-family-nickel/cobalt-transporter
MIVTILRQQPRAAALVLALIAANLLAWGWAFAAFGGSGALMAASLLAWGYGLRHAVDADHIAAIDNVTRKMMQQGKRPFAVGAWFSLGHSSIVVLASAAIAATATAFGQQMSWFHETGSVIGTAVSALFLLVMALINLVILRSVWRSFQAWKQGEKVSDEIMTGGGMMSWLFAKTFRLISRSWQMYLVGFLFGLGFDTATEVGVLGISAASASSGVSIWSIMVFPALFASGMALVDTLDNVLMVGAYGWAFSKPQRKLYYNMTITGTSVVVALFIGGLEALGLLMDKFSLSGGVWRWVGALNDHLGDAGFAVVGLFVACWVLSVLNYRWRGYDNLAR
>NZ_CP017928.1|WP_023321494.1|3191372_3192506_+|NADH:flavorubredoxin-reductase-NorW
MSDGIVIIGSGFAARQLVKNIRKQDPNIPLTLIAADSMDEYNKPDLSHVVSRGQNADDLTLQTAGEFAEQYNLRLFPHTWVSDIDADNQRVKSQDREWRYDKLVLATGATPFIPPVPGRELMLTLNSQREYGAAQSQLRDAKRVLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVLSALMPPEASSRLQHRLTDMGVHLMLKTQLESLEQSADGIRVTLDRQRTVMVDAVVAAAGLRPETALARHAGLKTHRGVVVNSQLQTSHPAIYALGDCAEINGMVLPFLQPILLSAMCLGKNLLAQQGELKLPPMLVKVKTPDLPLHLAGDTRREDLTWNIVAAKDGLVAKGVDAENRLRAFVVSEDRMKDAFALLRQLVS
>NZ_CP017928.1|WP_004104829.1|3189930_3191376_+|anaerobic-nitric-oxide-reductase-flavorubredoxin
MSILVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRGEIDLADIDYIIINHAEEDHAGALTELMTQIPDTPIYCTANAIDSITGHHHHPEWNFNVVKTGDSLDIGNGKQLIFVETPMLHWPDSMMTYMTGDAVLFSNDAFGQHYCDEHLFNDEVDQVELYEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVEKYLEWAADYQEDRITIFYDTMSNNTRMMADAIAQGITDVDPRVAVKIFNVARSDKNDILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLRFRNKHASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDLDALELCREHGREIARQWALSPLPVTSEAKAAPEATSCAAAATADLGPKMQCSVCQWIYDPEQGEPNQDVQPGTPWSDVPDNFLCPECSLGKDVFDVLASEAK
>NZ_CP017928.1|WP_004114728.1|3188198_3189743_-|nitric-oxide-reductase-transcriptional-regulator-NorR
MSFSVEALAKIAIDLQSDLGHADRFSRLITTLRQILGCDASALLRYEAHQFVPLAIDGLAQDVLGRRFALEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPGQESLKVHACVGLPLFAGQTLIGALTLDGMDADRFDSFSDEELRLIAALVAGALNNALLIARLENQNVLPEQAIAYPVSERQEIIGLSAPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPALRERDNDVVLLAGYFCEQCRVRMGLAQVILSEATRGRLLAWSWPGNVRELEHAIHRAVVLARATQAGNEVVLEPQHFQFAEETPALPTVTPQPSVGAVSLREATEAFQREAIARALADNRRNWAAAARALELDVANLHRLAKRLGLKGSRPDKSSAG
>NZ_CP017928.1|WP_004104842.1|3202527_3203013_-|hydrogenase-maturation-peptidase-HycI
MTDVLLCVGNSMMGDDGAGPLLAEMCAANPVGDWVVIDGGSAPENDIVAIRELRPERLLIVDATDMGLNPGEIRIVDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGIQPDIVGFYYPMTQPIKDAVEAVYARLDGWQGQGGFAALEAAEEPAFPG
>NZ_CP017928.1|WP_004104844.1|3203005_3203416_-|formate-hydrogenlyase-maturation-HycH-family-protein
MSETVVFSQLSRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSCPWQAYLAWIATLEEGSTARRKMEGVPKYGEIVIDSNHVTMLANAFDKALARQTPEQQAWSKTMLSMLHDIHQESAIYLMVRRLRD
>NZ_CP017928.1|WP_004104846.1|3203412_3204180_-|NADH-quinone-oxidoreductase-subunit-B-family-protein
MSNLLGPRDDNGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARVPGEQDEQPTELLHPDMVQPLRVRIDREARRLAGYRYGRQIADDYMRLLGQGDSQVMRWLEAEKDPRLTEIVTHLNQVVEGARIR
>NZ_CP017928.1|WP_004104848.1|3204179_3204722_-|4Fe-4S-binding-protein
MFTFIKKVIKTGTATHSYPLEPMPVDKNFRGKPEHNPQQCIGCAACVNACPSNALTVETDLATNQLAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFAICHCRVCERPFAVQKEIDYAIALLKHNGDSRAELHRESFETCPECKRQKCLVPSDRIELTRHMREAS
>NZ_CP017928.1|WP_014839316.1|3204731_3206441_-|formate-hydrogenlyase-subunit-HycE
MSEEKIGQHYLAALHQAFPGVVLDEAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEQGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLVPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGSKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRDVQELVDMLLSTPNMEQRTVGIGRLDPQIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPGGPLMVEGFTYIPHRFALGFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNSPLK
>NZ_CP017928.1|WP_004104852.1|3206458_3207382_-|respiratory-chain-complex-I-subunit-1-family-protein
MSVLIALLQALVLFAVAPLLSGVTRVARARLHNRRGPGVLQEYRDILKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVDSPMAGLGDLITLIYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPILLLGLWVAAQVAGSTHISSITDTIYHWPVARTLPLILALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVLKWGISLKQLVVLQMFVGVFIPWGQMTSFSVGGLLLALVVAVVKLVLGVLVIALFENSMARLRFCATSRVTWAGFGFAFLAFVSLLVA
>NZ_CP017928.1|WP_017145506.1|3207384_3209211_-|formate-hydrogenlyase-subunit-3
MSVISLVNQAVAWYAASAVLAFLFALRKPLSGAIAGIGGAVASAMLVLAGGTALLMPDRVSAGMLQMLHLPLRVGGVNALWLLAIGLSALPISLFNIAWHRHPQVKANGLLVNLLLAAAVCAVVVTNFGALVVMAEIMALCAAFLTGCAQSGKLWFALGRLGTLLMAWSCWLVWSTYGTLELGQITQLAVAAPQNALLWLPGLIGFALLAGVIPLHGWAPQAHAGASAPAAALFSTVVMKVGLYGILTVSLAGSVPPLWWGVMLLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAFVTGVATHNPTLMVLGFIGGMYHLINHSLFKTTLFLGAGAVWFRTGHRDIEKLGGIGKKMPLISLSMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSTGDAFVGRLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRSKEAENATCAPGLMTFSVVLAAVCCVIGGVAAPWLLPLVSGAFPVQAEVSSVVSQPLIAILLIACPLLPLLLMIFFKGDRLPARSRGAAWVCGYDHEKSMVVTAHGFAMPVKEAFAPILKLRHWLNPVRLVPGWQNASAPALFRGVALVELAVLVVIVISRGA
>NZ_CP017928.1|WP_023321498.1|3209207_3209816_-|4Fe-4S-dicluster-domain-containing-protein
MNRFVIADSTVCIGCRTCEAACAETHRQQGLQAMPRLRLMRNEKESAPQMCHHCEDAPCAAVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRPLDIPANANTPMAPAAPPAPARVSSLLDWVPGVRAIAVKCDLCHFDEEGPACVRTCPTKALLLVDIRDIAQASKRKRQLTFNTDLGDLSLFQAQQGDVK
>NZ_CP017928.1|WP_004104858.1|3209898_3210348_-|formate-hydrogenlyase-regulator-HycA
MTIWELSEKADYIADRHRQHQEQWHTYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFGHFQVYVALAEGFNSHTIEYYVESKDGGDRRLIAQATLGSDGTIDGRISNRDREQVLEHYLATIASVYDRLYEAIEQDQPVDLNHLTLAR
>NZ_CP017928.1|WP_004104859.1|3210556_3210901_+|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEITLSQRALEIIEQQAQQAGARRVTGVWLKVGAFSCVEASALTFCFELVCRGTLAEGCELHIAEQQAECWCESCQQYVHLISQHVRRCPQCQSDRLQIVADDGLQIQRLEVE

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Crispr_ID: NZ_CP017928_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017928_4

3414007-3414134

Orphan

Consensus_repeat	Method
TCCCGGATTGCGGCTGACGCCTTATCCGGGCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017928_4

>merge|NZ_CP017928|4|3414007-3414134|CRISPRCasFinder
TCCCGGATTGCGGCTGACGCCTTATCCGGGCTACAACATCGCCGCAGGCACGGAACGGCAGCCTGGCTAAGCGCTGCGCATGCGGGGGGATATTCCCGGATTGCGGCTGACGCCTTATCCGGGCTACA

>NZ_CP017928|4|4|3414007-3414134|CRISPRCasFinder
TCCCGGATTGCGGCTGACGCCTTATCCGGGCTACA	ACATCGCCGCAGGCACGGAACGGCAGCCTGGCTAAGCGCTGCGCATGCGGGGGGATAT
TCCCGGATTGCGGCTGACGCCTTATCCGGGCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017928.1\|WP_016809906.1\|3414190_3415384_-\|lysophospholipid-transporter-LplT	unknown	unknown	gnl\|CDD\|236879
NZ_CP017928.1\|WP_023330017.1\|3415376_3417536_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	unknown	unknown	gnl\|CDD\|181207
NZ_CP017928.1\|WP_004105253.1\|3411551_3412265_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP017928.1\|WP_023321566.1\|3424570_3425833_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|236867
NZ_CP017928.1\|WP_004105268.1\|3419611_3420385_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182318
NZ_CP017928.1\|WP_004105248.1\|3409456_3409987_-\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NZ_CP017928.1\|WP_004105246.1\|3406026_3406902_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NZ_CP017928.1\|WP_004105247.1\|3407197_3409444_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|182937
NZ_CP017928.1\|WP_004105244.1\|3405225_3406020_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984
NZ_CP017928.1\|WP_004105264.1\|3418158_3419175_+\|HTH-type-transcriptional-regulator-GalR	unknown	unknown	gnl\|CDD\|182681
NZ_CP017928.1\|WP_024274655.1\|3421888_3423226_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP017928.1\|WP_004105255.1\|3412389_3412608_+\|YgdI/YgdR-family-lipoprotein	unknown	unknown	gnl\|CDD\|380215
NZ_CP017928.1\|WP_004105257.1\|3412845_3413886_+\|NADP(H)-dependent-aldo-keto-reductase	unknown	unknown	gnl\|CDD\|236727
NZ_CP017928.1\|WP_162098333.1\|3410440_3410653_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017928.1\|WP_024274656.1\|3425967_3426894_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236819
NZ_CP017928.1\|WP_047721132.1\|3420453_3421881_-\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NZ_CP017928.1\|WP_004105252.1\|3410669_3411365_+\|DNA-mismatch-repair-endonuclease-MutH	unknown	unknown	gnl\|CDD\|179923
NZ_CP017928.1\|WP_162098332.1\|3423529_3424531_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380494
NZ_CP017928.1\|WP_047720710.1\|3404537_3405005_-\|prepilin-peptidase-dependent-protein	unknown	unknown	gnl\|CDD\|236704
NZ_CP017928.1\|WP_016809909.1\|3419135_3419615_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
NZ_CP017928.1\|WP_016809906.1\|3414190_3415384_-\|lysophospholipid-transporter-LplT	gnl\|CDD\|236879	PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional.	0
NZ_CP017928.1\|WP_023330017.1\|3415376_3417536_-\|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase	gnl\|CDD\|181207	PRK08043, PRK08043, bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase.	0
NZ_CP017928.1\|WP_004105253.1\|3411551_3412265_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.86896e-76
NZ_CP017928.1\|WP_023321566.1\|3424570_3425833_-\|diaminopimelate-decarboxylase	gnl\|CDD\|236867	PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional.	0
NZ_CP017928.1\|WP_004105268.1\|3419611_3420385_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|182318	PRK10225, PRK10225, Uxu operon transcriptional regulator.	6.12105e-76
NZ_CP017928.1\|WP_004105248.1\|3409456_3409987_-\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	4.35219e-106
NZ_CP017928.1\|WP_004105246.1\|3406026_3406902_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	1.42912e-113
NZ_CP017928.1\|WP_004105247.1\|3407197_3409444_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|182937	PRK11061, PRK11061, phosphoenolpyruvate--protein phosphotransferase.	0
NZ_CP017928.1\|WP_004105244.1\|3405225_3406020_-\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0
NZ_CP017928.1\|WP_004105264.1\|3418158_3419175_+\|HTH-type-transcriptional-regulator-GalR	gnl\|CDD\|182681	PRK10727, PRK10727, HTH-type transcriptional regulator GalR.	0
NZ_CP017928.1\|WP_024274655.1\|3421888_3423226_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	6.84154e-126
NZ_CP017928.1\|WP_004105255.1\|3412389_3412608_+\|YgdI/YgdR-family-lipoprotein	gnl\|CDD\|380215	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein. Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12.	1.53505e-34
NZ_CP017928.1\|WP_004105257.1\|3412845_3413886_+\|NADP(H)-dependent-aldo-keto-reductase	gnl\|CDD\|236727	PRK10625, tas, putative aldo-keto reductase; Provisional.	0
NZ_CP017928.1\|WP_016809909.1\|3419135_3419615_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.57743e-11
NZ_CP017928.1\|WP_024274656.1\|3425967_3426894_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|236819	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional.	0
NZ_CP017928.1\|WP_004105252.1\|3410669_3411365_+\|DNA-mismatch-repair-endonuclease-MutH	gnl\|CDD\|179923	PRK05070, PRK05070, DNA mismatch repair protein; Provisional.	7.05315e-165
NZ_CP017928.1\|WP_162098332.1\|3423529_3424531_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	8.36857e-129
NZ_CP017928.1\|WP_047720710.1\|3404537_3405005_-\|prepilin-peptidase-dependent-protein	gnl\|CDD\|236704	PRK10506, PRK10506, prepilin peptidase-dependent protein.	5.67215e-72
NZ_CP017928.1\|WP_047721132.1\|3420453_3421881_-\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	1.23626e-149

>NZ_CP017928.1|WP_004105257.1|3412845_3413886_+|NADP(H)-dependent-aldo-keto-reductase
MQYHRIPHSSLEISTLGLGTMTFGEQNSEADAHEQLDYAVSQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKRGNREKLVIASKVSGPARNNDSSIRPDHKLDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYTWADSAPVVTLLDTLDALAEFQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLVNRSYEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHNLDPAQMALAFVRRQPFVASTLLGATTMEQLKTNVESLHLELSAEVLAEIEAVHQVYTYPAP
>NZ_CP017928.1|WP_004105255.1|3412389_3412608_+|YgdI/YgdR-family-lipoprotein
MKKWAVLISAVGLAFSVSGCSSDYVMATKDGRMILTDGKPAIDDDTGLISYEDQQGNKMQINRDDVSQIIKR
>NZ_CP017928.1|WP_004105253.1|3411551_3412265_+|TerC-family-protein
MLFAWVTDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRIGLMGAMIMRLALLASIAWVVKLTNPLFTVLGQEISFRDLILLLGGLFLIWKASKEIHESIEGEEEGLKTNVHSFMGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVLVMMVAARSIGDFVDRHPSVKMLALSFLILVGFTLMLESFDVHVPKGYIYFAMFFSIAVESLNLLRNKKNPL
>NZ_CP017928.1|WP_004105252.1|3410669_3411365_+|DNA-mismatch-repair-endonuclease-MutH
MSTIAPLLSPPQSQAQLLAQAQQLAGYSLGELAMLAGIPIPRDLKRDKGWIGILLEIWLGASAGSKPEQDFAALGVELKTIPIDAFGRPLETTFVCVAPLTGNSGVTWESSHVRHKLKRVLWVPVEGDRAIPLADRRVGAPLLWSPSEEEERQLRMDWEELMDLIVLGQVERITARHGEVLQLRPKAANSKALTEAVGARGEPILTLPRGFYLKKNFTAALLARHFLLYPK
>NZ_CP017928.1|WP_162098333.1|3410440_3410653_+|hypothetical-protein
MGLFPSYPIFLWITWCKILFIVGDQFWKTRFYKFHRGKKSQKKLYESSNCHTYPRKGKLYPQRMKLPLIF
>NZ_CP017928.1|WP_004105248.1|3409456_3409987_-|RNA-pyrophosphohydrolase
MIDDDGYRPNVGIVICNRQGQVMWARRYGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLIGSDADVNMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVTMALAENTPKPQSAPAYRRKRG
>NZ_CP017928.1|WP_004105247.1|3407197_3409444_-|phosphoenolpyruvate--protein-phosphotransferase
MLTRLREIVEKVASAPRLNEALDILVTDICAAMETEVCSVYLADHDRRCYYLMATRGLKKPRGRIVALAFDEGLVGLVGRLAEPINLADAQKHPSFKYIPAVKEGRFRAFLGVPIIQRRQLLGVLVVQQRELRQFDESEESFLVTLATQIAGILSQSQLNALFGQYRQTRIRALPASSGVAIAEGWMDVSLPLMEQVYEASTLDTASERERLTGALEEAANEFRRYSKRYSAGAQKETAAIFDLYSHLLSDARLRRELFAEVDKGAVAEWAVKKIIEKFAEQFAALSDGYLKERAGDLRTLGQRLLFHLDDSIQGPNTWPERIVLVADELSATTLAEVPQDRLAGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSLLHGHTLIVDGYRGELLVDPEPVLLQEYQRLISEENELSRLAEDDLERASELKSGERVKVMLNAGLSPEHEEKLGNFVDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKSVTLRTLDIGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLVQVRAMLRANAATGNLSILLPMVTSLDEVDEARRLIDRASREVEEMIGYAIPRPRLGVMLEVPSMVFMLPQLANRVDFISVGTNDLTQYILAVDRNNTRVASMYDSLHPGVLRALAMIARDAERFGIDLRLCGEMAGDPMCVTILIGMGYRHLSMNGRSVARVKYLLRRIDINEAQELSQRSLEAQMTAEVRHQVAAFMERRGLGGLIRGGR
>NZ_CP017928.1|WP_004105246.1|3406026_3406902_-|prolipoprotein-diacylglyceryl-transferase
MNSGYLHFPEFDPVIFSIGPVSLHWYGLMYLVGFVFAMWLATRRANRPGSGWTKNEVENLLYAGFLGVFLGGRLGYVFFYNLPVFLDDPIYLFRVWDGGMSFHGGLIGVILVMIIFAKRTKRTFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNFHYSMIFPGSRAEDLALLPSHPEWQSLFDTYGALPRHASQLYELALEGVVLFLILNLFIRKPRPAGSVSGLFLIGYGLFRIIVEFFRQPDAQFTGGWVQYISMGQILSIPMVLAGIIMMVWAYRSRPQQQNS
>NZ_CP017928.1|WP_004105244.1|3405225_3406020_-|thymidylate-synthase
MKQYLDLMQKVLDEGTQKNDRTGTGTVSIFGHQMRFNLQEGFPLVTTKRCHLRSIIHELLWFLKGDTNVAYLHENNVTIWDEWADENGDLGPVYGKQWRSWPAPDGRHIDQISTVMEQLKNDPDSRRIIVSAWNVGELNKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMVAQQCDLEVGDFVWTGGDTHLYSNHMEQTHLQLSREPRALPKLVIKRKPASIFDYRFEDFEIEGYDPHPGIKAPVAI
>NZ_CP017928.1|WP_047720710.1|3404537_3405005_-|prepilin-peptidase-dependent-protein
MNREHGYTLIETLVTMVVVVILGASGLYGWQSWQHQQRLWQTACQVRDYLVLLRDDANWHNRDRVLSVDRSAEGWCLSVSGATNDCSVSNAFTLQPLWPEVSLSAMTPGLGFYGLRNTAWAGHIRLQSAAGGWNIIVSNWGRIRLCRSEETASCL
>NZ_CP017928.1|WP_016809906.1|3414190_3415384_-|lysophospholipid-transporter-LplT
MSESVHTNNSLYSKGMIAVICAQFLSAFGDNALLFATLALMKQLFYPEWSQPVLQMLFVGAYILFAPFVGQFADSFAKGRVMMVANGLKLIGAGCICFGVNPFLGYTLVGIGAAAYSPAKYGILGELTTGDKLVKANGLMESSTIAAILLGSMAGGILADWHVVAALSVCAVVYAGAVVANLWIPKLPAARPGQSWRFRPMTHSFFSACTTLWRNGETRFSLVGTSLFWGAGVTLRFLLVLWVPVALGITSNAMPTYLNAMVAVGIVLGAGAAAKLVTLETVSRCMPAGILIGVAVIFFAIQQALLPAFALLLLLGAFGGFFIVPLNALLQERGKHTVGAGNAIAVQNLGENVAMLLMLGLYSLAVSIGIPVVGVGMGFGVVFALAITALWIWGRRK
>NZ_CP017928.1|WP_023330017.1|3415376_3417536_-|bifunctional-acyl-ACP--phospholipid-O-acyltransferase/long-chain-fatty-acid--ACP-ligase
MLLGFFRLLFKGLYRVRLTGDTQALYQQKVLITPNHVSFIDGVLLALFLPVRPVFAVYSSISERWFMRALKPLIDFVPLDPTKPMSIKHLVRLIEQGRPVVIFPEGRISVSGSLMKIYDGAAFVAAKSQATIVPLRIEGAELTHFSRLKGLVRRRLFPRIQLHLLPPTHLPMPEAPRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLAAQDRFGARKNCVEDINFQPDTYRKLLTKTLFVARILEKYSAQGEKIGLMLPNAGISAAVIFGAIARGRIPAMMNYTAGVKGLSSAITAAEIKTIFTSRTFLDKGKLWHLPEQLTQVRWVFLEDLKGDVTAADKLWIFGHLLMPKLAQVKQEPEDAAMILFTSGSEGNPKGVVHSHKSLLANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLLTPLFTGAEVFLYPSPLHYRVVPELVYDRNCTVLFGTSTFLGNYARFANPYDFYRLRYVVAGAEKLQESTKQIWQDKFGLRILEGYGVTECAPVVSINVPMAAKVGTVGRILPGMDARLLAMPGIEEGGRLQLKGPNIMNGYLRVENPGVLEAPAAENQHGEVENGWYDTGDIVSFDEQGYVRIQGRAKRFAKIAGEMVSLEMVEQVALAVSPDKMHATAIKQDASKGEALVLFTTDNELNREKLLRYAREHGVPELAVPRDIRWLKQLPVLGSGKPDFVTLKSMVDRTEDSDE
>NZ_CP017928.1|WP_004105264.1|3418158_3419175_+|HTH-type-transcriptional-regulator-GalR
MATIKDVARLAGVSVATVSRVINNSPKASEASRQSVGAAMETLNYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYNTGNFLLIGNGYHSLHKERQAIEQLIRHRCAALVVHAKIIPDDELASLMKQIPGMVLINRILPGFEQRCVALDDRYGAWLATRHLIQQGHTRIGYLCSNHAISDAEDRLQGYYSALKESNLPCNDRLVTFAEPDESGGELAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPREISLIGFDDVLISRYVRPRLTTVRYPIITMATQAAELALALAEHRPPPEITHLFSPTLVRRHSVIAPLDSDKS
>NZ_CP017928.1|WP_016809909.1|3419135_3419615_-|GNAT-family-N-acetyltransferase
MMIQPLYAAPQHASRVTEWLWRAFGGETLPQAFFASIVGHSQTPGALPMTFIAAEGETLLGTVGLWRCDLISRQDLYPWMAALYVAPEARGQGLAGKLQQHVIDYARKQGYGELFLYSACRDFYERFGWQYIGEGLDYPAAAVSLYRYDLSLSRGAITE
>NZ_CP017928.1|WP_004105268.1|3419611_3420385_-|GntR-family-transcriptional-regulator
MEKAIIPPEKKPYQEIGDDLRAQIAQGRYPIGSRLPPERNIAETYGVSRTIVREALLMLELQGTVDIRQGSGVYVMRIPHEDDSEEEQMLSSDVGPFEILQARQLLESNIAAFAAKMATRADIDNLKRIIEQEQRAIAANDTSQDNARLFHLVLAGATQNQMLLATVERIWLQMDSSPLWQQFNVHIASRAYRLKWLGDRQTLLAALRRRDVMGAWQAMWQHLENVKNSLLELSDEDAPDFDGYLFESVPIFQGKLV
>NZ_CP017928.1|WP_047721132.1|3420453_3421881_-|glycoside-hydrolase-family-1-protein
MTTVKMAIPRDFILGAAASAWQTEGWSGKQEGQDSWPDLWYKNDRHVWHNGYGPAVATDFINRFREDVQLMKLAGLTHYRTSINWSRFLTDYENVTVDEAYATYYDQLFDELLANGIEPMICLEHYELPGYLLEQYGGWASKKVVALFTQYAEKVFARYHRKVTRWFTFNEPIVVQTRVYLDALRWPYEQNTGIWMQWNHHKVLATAKVVQLFREKGYRGTVGCILNPEVTYPRSTAPHDVRAAERYDLFYNRIFLDPLVHGEYPPELLALLEQHEVAWDYRAEELAIIRENTVDELGINLYYPHRVKAPSRAWHPQTPFHPAYYYEPFELPGRRMNHSRGWEIYPQIIFDMAMRIKRDYRNIPWFVAESGMGVENEGQFRNSEGTIADDYRIRFISEHLWQTLRAREAGANCQGYMLWAFTDNVSPVNAFKNRYGLIEIDLQNNRARRPKASASWFRKLGESRELTLDIDDEWR
>NZ_CP017928.1|WP_024274655.1|3421888_3423226_-|PTS-sugar-transporter-subunit-IIC
MALQDKLIDSLGSFATKFNSYRYIMAIKSAFITLMPVIIVGAFSVLISNMVLDPKNGLASFQALSFLAALKPITSAINYATLNFLNIGAVFLIGIELGRINGIKSLFPGLLAVICFICVTPTTVEMMVDGQMHEVKDVLLRQFSDTRSLFLGMFIAILSVEIYCWLEGRKGLKIKMPDTVPPNVSASFSALIPAIITTTVIATFGFIFHQATGMYLYDAVYQVVQQPLERVVQSLPGILLLMFVAQLFWVIGIHGNQMIKPIREPLLLGAITVNMSAFEQGKEVPNIITMPFWDVYMSIGGSGLTIGLLIAVMIATKRKEMKEIAKLSIGPGLFNINEPVIFGMPIMLNPILAIPFIITPLVTGSIGYFATAAGFAGKAVVMVPWTTPPLINAWLSTAGSMGAVVTQLICILTAVLIYLPFVKIASRRAANAQRQADNAQASENA
>NZ_CP017928.1|WP_162098332.1|3423529_3424531_+|substrate-binding-domain-containing-protein
MLDVSIRAGVSKATVSRVLNGTGQVKESTRQQVFKAMEELGYRPNFLARSLANRTSNSIGLVVSTFDGFYFGRLLQQASRQTEAWGKQLIVTDGHDAPEREEEAVQMLADRQCDAIVLYTRHMSEKKIMSLIESIDMPLVVINRDVSQARERCVFFEQQDAAFQAVEYLITQGHRDIACITVPMHTPTGKARLEGYRNALKKHGIKWDPAKVKYGDSTMSRGYELCCELLEEKTPFSALFSCNDDMALGASKALHQAGLRIPQDISLFGFDDAPSAKWLEPGLSTVYLPIDNMITTAIDQAIKLANGQPIETIPPFTGKLVLRESVTTGPYYA
>NZ_CP017928.1|WP_023321566.1|3424570_3425833_-|diaminopimelate-decarboxylase
MPHSLYATNTDLNADNLLRLPAEFGCPVWVYDAQIIRRQIAQLSKFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYDPHQHPEDIVFTADLIDDATLARVKELQIPVNAGSIDMLSQLGEVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWHSHLTAALEVMRRYQLQLVGIHMHIGSGVDYGHLEQVCGAMVRQVVEFGQDLQAISAGGGLSIPYREGEEAIDTDHYFGLWNAAREQVAKHLGHPVALEIEPGRFLVAESGVLVSQVRSVKEMGSRHFVLIDAGFNDLMRPAMYGSYHHITALAADGRDLSAAAEIETVVAGPLCESGDVFTQQEGGKVETRLLPAVVPGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFDNGKARLIRRRQTIEELLALEQL
>NZ_CP017928.1|WP_024274656.1|3425967_3426894_+|LysR-family-transcriptional-regulator
MPAVNLRHIEIFHAVMTTGNLTEAARMLHTSQPTVSRELARFEKVLGLTLFARARGRLQPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSVACLPVFSQSFLPLLLEPFLTRYPEVSLQIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTERTPLLTLNEVCVLPQGHPLAAKQVLTPADFNGENYISLSRTDSYRQLLDALFHEHQVKRRMVVETHSAASICAMVRAGVGISVVNPLTALDYAGNGVVVRRFSVEVPFTVSLVRPLHRPGSALVDAFALHLQNSMSRILTPLEAVLTKA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	158121-158147	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	299946-299972	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	352131-352157	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	393711-393737	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	651586-651612	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	1171046-1171072	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	1171167-1171193	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	1234679-1234705	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	1234797-1234823	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	1249156-1249182	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	1333617-1333643	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	1668729-1668755	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	1862320-1862346	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	3217569-3217595	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	3336356-3336382	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	3336510-3336536	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	3434145-3434171	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	3461110-3461136	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	3461288-3461314	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4171839-4171865	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4171961-4171987	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4172083-4172109	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4172328-4172354	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4172450-4172476	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4264521-4264547	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4448041-4448067	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	5292418-5292444	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	5821296-5821322	0	1.0
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	701430-701456	1	0.963
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	1529662-1529688	1	0.963
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	2926320-2926346	1	0.963
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	3460932-3460958	1	0.963
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4172206-4172232	1	0.963
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4200393-4200419	1	0.963
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	4346315-4346341	1	0.963
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	672450-672476	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	913924-913950	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	2926441-2926467	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	3336664-3336690	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	3444060-3444086	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP017928.1	5874583-5874609	2	0.926

1. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 158121-158147, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

2. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 299946-299972, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

3. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 352131-352157, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

4. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 393711-393737, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

5. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 651586-651612, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

6. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 1171046-1171072, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

7. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 1171167-1171193, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

8. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 1234679-1234705, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

9. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 1234797-1234823, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

10. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 1249156-1249182, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

11. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 1333617-1333643, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

12. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 1668729-1668755, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

13. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 1862320-1862346, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

14. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 3217569-3217595, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

15. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 3336356-3336382, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

16. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 3336510-3336536, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

17. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 3434145-3434171, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

18. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 3461110-3461136, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

19. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 3461288-3461314, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

20. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4171839-4171865, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

21. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4171961-4171987, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

22. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4172083-4172109, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

23. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4172328-4172354, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

24. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4172450-4172476, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

25. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4264521-4264547, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

26. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4448041-4448067, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

27. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 5292418-5292444, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

28. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 5821296-5821322, mismatch: 0, identity: 1.0

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccgggaa	Protospacer
***************************

29. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 701430-701456, mismatch: 1, identity: 0.963

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgccgccgggaa	Protospacer
******************* *******

30. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 1529662-1529688, mismatch: 1, identity: 0.963

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgtgcagcatcgcctccgggaa	Protospacer
*******.*******************

31. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 2926320-2926346, mismatch: 1, identity: 0.963

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatacgcagcatcgcctccgggaa	Protospacer
******.********************

32. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 3460932-3460958, mismatch: 1, identity: 0.963

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagaagcgcagcatcgcctccgggaa	Protospacer
***** *********************

33. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4172206-4172232, mismatch: 1, identity: 0.963

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcacctccgggaa	Protospacer
****************.**********

34. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4200393-4200419, mismatch: 1, identity: 0.963

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctccggaaa	Protospacer
************************.**

35. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 4346315-4346341, mismatch: 1, identity: 0.963

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgcagcatcgcctgcgggaa	Protospacer
******************** ******

36. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 672450-672476, mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acaggtgcgcagcaccgcctccgggaa	Protospacer
****.*********.************

37. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 913924-913950, mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgcgccgcaccgcctccgggaa	Protospacer
********** ***.************

38. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 2926441-2926467, mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagatgggcagcatcgtctccgggaa	Protospacer
******* *********.*********

39. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 3336664-3336690, mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acagaggcgtagcatcgcctccgggaa	Protospacer
***** ***.*****************

40. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 3444060-3444086, mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acaggtgcgcagcaccgcctccgggaa	Protospacer
****.*********.************

41. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to position: 5874583-5874609, mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acaggtgcgcagcaccgcctccgggaa	Protospacer
****.*********.************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP026282	Klebsiella oxytoca strain KONIH2 plasmid pKOR-e3cb, complete sequence	13486-13512	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP050074	Enterobacter kobei strain 070 plasmid p070, complete sequence	43248-43274	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP041248	Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence	139694-139720	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP011633	Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-150, complete sequence	92342-92368	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	199532-199558	2	0.926
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	CP052389	Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1	27680-27706	4	0.852
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	411143-411169	5	0.815
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	35995-36021	6	0.778
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1881920-1881946	8	0.704
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1881961-1881987	8	0.704
NZ_CP017928_3	3.1\|3202388\|27\|NZ_CP017928\|CRISPRCasFinder	3202388-3202414	27	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1881918-1881944	8	0.704
NZ_CP017928_2	2.1\|2530640\|37\|NZ_CP017928\|CRISPRCasFinder	2530640-2530676	37	NC_022437	Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence	33918-33954	10	0.73

1. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to NZ_CP026282 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-e3cb, complete sequence) position: , mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acaggtgcgcagcaccgcctccgggaa	Protospacer
****.*********.************

2. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to NZ_CP050074 (Enterobacter kobei strain 070 plasmid p070, complete sequence) position: , mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acaggtgcgcagcaccgcctccgggaa	Protospacer
****.*********.************

3. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to NZ_CP041248 (Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acaggtgcgcagcaccgcctccgggaa	Protospacer
****.*********.************

4. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to NZ_CP011633 (Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-150, complete sequence) position: , mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acaggtgcgcagcaccgcctccgggaa	Protospacer
****.*********.************

5. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to NZ_CP026234 (Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence) position: , mismatch: 2, identity: 0.926

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acaggtgcgcagcaccgcctccgggaa	Protospacer
****.*********.************

6. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to CP052389 (Klebsiella pneumoniae strain C17KP0052 plasmid pC17KP0052-1) position: , mismatch: 4, identity: 0.852

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
acaggtgcgcagcaccgcctccgggtt	Protospacer
****.*********.**********

7. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.815

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
gaagatgcgcagcatcgtccccgggga	Protospacer
. ***************.*.*****.*

8. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 6, identity: 0.778

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
gaagcgccgcagcatcgcctccgggat	Protospacer
. **   *******************

9. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.704

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
gtggatgcgcagcatcgcctccactgc	Protospacer
...*******************.  .

10. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.704

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
gtggatgcgcagcatcgcctccactgc	Protospacer
...*******************.  .

11. spacer 3.1|3202388|27|NZ_CP017928|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.704

acagatgcgcagcatcgcctccgggaa	CRISPR spacer
gtggatgcgcagcatcgcctccactgc	Protospacer
...*******************.  .

12. spacer 2.1|2530640|37|NZ_CP017928|CRISPRCasFinder matches to NC_022437 (Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence) position: , mismatch: 10, identity: 0.73

gtctgagattttccagggcctggcgcgcccggtttat	CRISPR spacer
ccctgagattttccagcgccttgcgcgcagcgttggc	Protospacer
 .************** **** ******   *** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

818057 : 879533

Enterobacteria_phage(52.94%)

integrase,head,tRNA,capsid,plate,terminase,portal,tail

attL 836888:836904|attR 874201:874217

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017146107.1\|818057_819164_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_004112222.1\|819202_819679_-	NUDIX hydrolase	NA	NA	NA	NA
WP_023320724.1\|819699_820350_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_004101197.1\|820586_821837_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	4.4e-19	90.7
WP_004101200.1\|821933_822272_-	hypothetical protein	NA	NA	NA	NA
WP_024274036.1\|822468_824253_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.5e-20	37.7
WP_023320726.1\|824333_825521_-	HD domain-containing protein	NA	NA	NA	NA
WP_047719969.1\|825799_826843_+	type II asparaginase	NA	NA	NA	NA
WP_004101215.1\|827232_827604_-	hypothetical protein	NA	NA	NA	NA
WP_047719968.1\|827684_830015_-	TonB-dependent receptor family protein	NA	NA	NA	NA
WP_004101218.1\|830112_831060_-	fec operon regulator FecR	NA	NA	NA	NA
WP_004101219.1\|831056_831578_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_023320730.1\|831835_832624_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004101221.1\|833162_834077_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.0e-73	51.2
WP_023320731.1\|834166_834805_+	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004112248.1\|834933_835197_+	DUF2534 family protein	NA	NA	NA	NA
WP_085955747.1\|835245_835371_-	hypothetical protein	NA	NA	NA	NA
WP_100248259.1\|835511_835586_-	protein YoaJ	NA	NA	NA	NA
WP_004101234.1\|835585_835687_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_023320733.1\|835744_836758_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
836888:836904	attL	NA	NA	NA	NA
WP_047719967.1\|837020_838004_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	2.4e-150	80.1
WP_038423230.1\|838119_838419_-	helix-turn-helix transcriptional regulator	Q1JS61	Enterobacteria_phage	3.5e-36	71.7
WP_023300861.1\|838541_838811_+	regulatory phage cox family protein	Q1JS60	Enterobacteria_phage	3.9e-42	88.8
WP_023300862.1\|838915_839131_-	hypothetical protein	NA	NA	NA	NA
WP_021466843.1\|839264_839483_+	hypothetical protein	A0A0M5M1I3	Salmonella_phage	1.6e-06	47.3
WP_009486498.1\|839498_839876_+	hypothetical protein	NA	NA	NA	NA
WP_047719966.1\|839891_840164_+	hypothetical protein	NA	NA	NA	NA
WP_004213098.1\|840232_840457_+	hypothetical protein	NA	NA	NA	NA
WP_047719965.1\|840453_841020_+	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	4.7e-13	31.5
WP_047719963.1\|841293_842310_+	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	1.1e-65	43.7
WP_047719961.1\|844960_846649_+	AIPR family protein	D0UIM0	Aggregatibacter_phage	1.3e-175	53.1
WP_047719959.1\|846851_848216_-	hypothetical protein	R9TRQ8	Vibrio_phage	1.8e-18	22.3
WP_047719958.1\|848798_849860_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	4.1e-143	68.4
WP_047719957.1\|849853_851581_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	8.2e-234	68.4
WP_047719956.1\|851737_852577_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	66.3
WP_047719954.1\|852587_853622_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	6.2e-96	50.3
WP_047719953.1\|853671_854538_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	2.6e-71	58.9
WP_032708341.1\|854642_855158_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.7e-41	50.0
WP_004131559.1\|855157_855358_+\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	1.6e-16	63.1
WP_032432781.1\|855348_855633_+	hypothetical protein	NA	NA	NA	NA
WP_047719951.1\|855629_856175_+	lysozyme	Q1I0Z1	Pasteurella_virus	1.1e-30	43.0
WP_049070297.1\|856186_856516_+	DUF2570 domain-containing protein	NA	NA	NA	NA
WP_128316295.1\|856505_856697_+	peptidase	NA	NA	NA	NA
WP_032720044.1\|856697_857165_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	7.0e-47	59.5
WP_047719950.1\|857161_857797_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	7.8e-57	51.4
WP_047719949.1\|857793_858381_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	4.8e-53	56.0
WP_017898624.1\|858377_858728_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	1.2e-27	56.5
WP_047719948.1\|858729_859653_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	9.3e-51	42.9
WP_047719947.1\|859642_862672_+\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	3.7e-24	40.7
WP_047719946.1\|862668_862884_+	hypothetical protein	NA	NA	NA	NA
WP_047719945.1\|862868_863966_+\|tail	phage tail protein	G4KKN6	Yersinia_phage	8.8e-08	47.8
WP_047719944.1\|864237_866697_+	hypothetical protein	NA	NA	NA	NA
WP_047721071.1\|866861_867335_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.9e-52	62.1
WP_047719943.1\|867350_870326_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	1.1e-217	46.2
WP_053086776.1\|870312_870450_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	5.8e-10	65.9
WP_047719942.1\|870470_870782_-\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	1.5e-16	52.2
WP_047719941.1\|870827_871343_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.7e-57	61.2
WP_047719940.1\|871342_872515_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	2.9e-158	70.5
WP_047719938.1\|872669_873809_+	phage late control D family protein	B9A7A9	Serratia_phage	1.4e-144	71.7
WP_004216467.1\|873852_874104_+	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	3.4e-08	49.2
WP_023320734.1\|874367_874607_+	DUF333 domain-containing protein	NA	NA	NA	NA
874201:874217	attR	NA	NA	NA	NA
WP_004101238.1\|874610_874958_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004101240.1\|874944_875454_-	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004101242.1\|875616_876309_+	CTP synthase	NA	NA	NA	NA
WP_004101244.1\|876346_877531_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004101246.1\|877631_878423_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004101248.1\|878406_878853_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_023320736.1\|879032_879533_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_2

1041995 : 1101847

Enterobacteria_phage(25.0%)

protease,tRNA,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024274068.1\|1041995_1043756_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_024274069.1\|1043719_1044805_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004101511.1\|1044782_1045322_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004101512.1\|1045321_1045813_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_004101515.1\|1045961_1047641_-	glycoside hydrolase family 43 protein	NA	NA	NA	NA
WP_163470950.1\|1047696_1049136_-	MFS transporter	NA	NA	NA	NA
WP_024274071.1\|1050604_1051564_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_024274072.1\|1051578_1052112_-	DUF3833 domain-containing protein	NA	NA	NA	NA
WP_024274073.1\|1052108_1053332_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_004101529.1\|1053328_1054051_-	DUF1365 domain-containing protein	NA	NA	NA	NA
WP_017146024.1\|1054052_1055312_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_004101533.1\|1055308_1056028_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_004101535.1\|1056024_1056459_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_004101537.1\|1056726_1057455_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.1e-45	46.4
WP_023320839.1\|1057555_1057900_-	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_023320840.1\|1057998_1059186_-	MFS transporter	NA	NA	NA	NA
WP_016807767.1\|1059327_1060464_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_004101545.1\|1060635_1061520_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004101547.1\|1061723_1062266_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_024274075.1\|1062397_1063282_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023320841.1\|1063438_1064419_+	nitronate monooxygenase	NA	NA	NA	NA
WP_024274076.1\|1064588_1065521_-	aromatic alcohol reductase	NA	NA	NA	NA
WP_024274077.1\|1065658_1066564_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004101558.1\|1067230_1067419_+	hypothetical protein	NA	NA	NA	NA
WP_017146020.1\|1068297_1068612_-	PTS cellobiose transporter subunit IIB	NA	NA	NA	NA
WP_004112572.1\|1068789_1068981_-	hypothetical protein	NA	NA	NA	NA
WP_004101565.1\|1069135_1069330_-	hypothetical protein	NA	NA	NA	NA
WP_004178082.1\|1069956_1071444_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_023320844.1\|1071522_1071945_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	6.8e-33	55.1
WP_023320845.1\|1071944_1073210_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	5.9e-157	66.1
WP_017146018.1\|1073373_1074441_-	oxidoreductase	NA	NA	NA	NA
WP_024274078.1\|1074454_1075201_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.4e-17	29.8
WP_004101576.1\|1075370_1076003_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_032734669.1\|1076086_1076716_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_024274079.1\|1077133_1077664_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_016807754.1\|1077719_1078391_+	molecular chaperone	NA	NA	NA	NA
WP_023329610.1\|1078454_1080986_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_023329611.1\|1081017_1081950_+	fimbrial protein	NA	NA	NA	NA
WP_047719906.1\|1081958_1082477_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_029779322.1\|1082595_1083216_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_016807751.1\|1083557_1084541_+	zinc transporter ZntB	NA	NA	NA	NA
WP_023320856.1\|1085023_1086397_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.8e-50	32.4
WP_024274080.1\|1086441_1087377_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.0e-139	93.4
WP_023320857.1\|1088327_1089266_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_017146008.1\|1089472_1089763_-	Bor family protein	C6ZCX3	Enterobacteria_phage	1.1e-29	64.9
WP_004101601.1\|1089948_1090383_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	7.2e-30	51.4
WP_004112591.1\|1090465_1090678_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_004101605.1\|1090827_1091934_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.7e-107	57.7
WP_047719904.1\|1092288_1095816_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_047719902.1\|1096294_1096996_+	helix-turn-helix transcriptional regulator	K7PKK1	Enterobacteria_phage	5.1e-33	40.0
WP_004101611.1\|1097456_1097819_+	hypothetical protein	C6ZR44	Salmonella_phage	5.1e-29	57.5
WP_004101612.1\|1097895_1098288_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	2.2e-25	53.7
WP_004101614.1\|1098277_1098550_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.2e-17	56.6
WP_017146003.1\|1098557_1099100_+	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	4.9e-68	64.6
WP_017146002.1\|1099329_1099695_+	hypothetical protein	NA	NA	NA	NA
WP_029496829.1\|1100022_1100295_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004101623.1\|1100291_1100732_-	heat shock protein HslJ	NA	NA	NA	NA
WP_004112629.1\|1100857_1101847_-	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	1.9e-70	45.7

DBSCAN-SWA_3

1369769 : 1402580

Erwinia_phage(21.43%)

integrase,head,plate,terminase,transposase

attL 1366279:1366297|attR 1401096:1401114

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1366279:1366297	attL	NA	NA	NA	NA
WP_016809009.1\|1369769_1370648_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_016809008.1\|1370651_1370909_+	hypothetical protein	NA	NA	NA	NA
WP_016809007.1\|1371986_1372940_+	hypothetical protein	A0A1D8EQC7	Escherichia_phage	3.1e-09	26.4
WP_016809006.1\|1372936_1373647_+\|plate	phage baseplate protein	NA	NA	NA	NA
WP_016809004.1\|1373657_1374035_+	hypothetical protein	NA	NA	NA	NA
WP_004113032.1\|1374249_1374597_+	hypothetical protein	NA	NA	NA	NA
WP_016809000.1\|1374583_1375993_+\|plate	baseplate J/gp47 family protein	A0A2I7QTL1	Vibrio_phage	3.0e-08	21.9
WP_047719837.1\|1375992_1376748_+	hypothetical protein	NA	NA	NA	NA
WP_016808996.1\|1376740_1376974_+	hypothetical protein	NA	NA	NA	NA
WP_016808994.1\|1376970_1377207_+	hypothetical protein	NA	NA	NA	NA
WP_016808992.1\|1377206_1377839_+	hypothetical protein	NA	NA	NA	NA
WP_016808991.1\|1378224_1378497_-	hypothetical protein	R9TRL1	Aeromonas_phage	5.7e-17	64.1
WP_139025210.1\|1378496_1380473_-	hypothetical protein	R9TMK5	Aeromonas_phage	3.0e-171	55.9
WP_016808988.1\|1380585_1381101_-	recombinase	Q5QBN4	Enterobacteria_phage	2.1e-36	46.4
WP_026055955.1\|1381118_1382717_-	ERF family protein	NA	NA	NA	NA
WP_016808986.1\|1382990_1383386_-	hypothetical protein	NA	NA	NA	NA
WP_100290036.1\|1383727_1383883_+	Hok/Gef family protein	NA	NA	NA	NA
WP_016808984.1\|1384204_1384750_+	hypothetical protein	NA	NA	NA	NA
WP_016808983.1\|1384736_1386146_+\|terminase	PBSX family phage terminase large subunit	A0A2I7RTP3	Vibrio_phage	1.0e-56	33.7
WP_016808982.1\|1386142_1387516_+	DUF1073 domain-containing protein	NA	NA	NA	NA
WP_016808981.1\|1387502_1388864_+\|head	phage head morphogenesis protein	E5AGA5	Erwinia_phage	1.7e-16	28.6
WP_026055954.1\|1388835_1389849_+	DUF2213 domain-containing protein	A0A291LCH5	Klebsiella_phage	2.6e-14	35.0
WP_016808979.1\|1389848_1390640_+	Ig domain-containing protein	A0A1S5R5Y7	Pseudomonas_phage	5.6e-12	55.3
WP_047719836.1\|1390657_1391596_+	DUF2184 domain-containing protein	E5AGA8	Erwinia_phage	6.6e-28	30.8
WP_004113060.1\|1391599_1391854_+	hypothetical protein	NA	NA	NA	NA
WP_016808977.1\|1391863_1392223_+	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_016808976.1\|1392343_1392817_+	hypothetical protein	NA	NA	NA	NA
WP_016808975.1\|1392912_1393167_+	hypothetical protein	NA	NA	NA	NA
WP_016808974.1\|1393166_1393952_+	hypothetical protein	NA	NA	NA	NA
WP_016808973.1\|1393952_1395311_+	DUF3383 family protein	E5AGB4	Erwinia_phage	2.8e-35	27.8
WP_047719835.1\|1395313_1395736_+	hypothetical protein	NA	NA	NA	NA
WP_004113073.1\|1395735_1396221_+	hypothetical protein	NA	NA	NA	NA
WP_016808970.1\|1396348_1398280_+	tape measure protein	NA	NA	NA	NA
WP_016808969.1\|1398290_1398557_+	DUF4282 domain-containing protein	A0A077KGV8	Edwardsiella_phage	8.4e-05	41.6
WP_016808968.1\|1398638_1399235_+	hypothetical protein	NA	NA	NA	NA
WP_016808967.1\|1399235_1399574_+	hypothetical protein	NA	NA	NA	NA
WP_016808966.1\|1399574_1399853_+	hypothetical protein	I6R0S9	Salmonella_phage	3.4e-09	52.5
WP_032743587.1\|1399872_1400373_+	lysozyme	H9C184	Pectobacterium_phage	4.4e-71	75.8
WP_016808964.1\|1400369_1400903_+	DUF2514 family protein	NA	NA	NA	NA
WP_077257948.1\|1401233_1402580_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
1401096:1401114	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2072543 : 2099340

Escherichia_phage(28.95%)

terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077257953.1\|2072543_2074115_-	hypothetical protein	A0A1B1ITN4	uncultured_Mediterranean_phage	2.8e-55	29.8
WP_014837912.1\|2074156_2074378_-	hypothetical protein	NA	NA	NA	NA
WP_047721029.1\|2074378_2075971_-\|terminase	terminase	Q775B9	Bordetella_phage	3.0e-97	40.6
WP_047720773.1\|2075972_2076956_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	46.2
WP_047721175.1\|2077043_2077259_-	DUF551 domain-containing protein	A0A193GZ43	Enterobacter_phage	3.1e-26	73.2
WP_025108058.1\|2077488_2077734_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	2.0e-16	56.8
WP_047721174.1\|2077809_2078289_-	DUF2829 domain-containing protein	A0A1Y0T2L3	Pseudomonas_phage	1.2e-54	59.1
WP_047721026.1\|2078352_2078646_-	hypothetical protein	G8C7W3	Escherichia_phage	2.6e-31	71.1
WP_047721023.1\|2078787_2079063_-	hypothetical protein	G8C7W1	Escherichia_phage	5.4e-15	48.9
WP_047721022.1\|2079059_2079404_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-35	74.6
WP_004136189.1\|2079400_2079943_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	5.8e-77	77.5
WP_139153343.1\|2079939_2080239_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	8.4e-46	98.0
WP_042934016.1\|2080700_2081198_-	antiterminator	G8C7V7	Escherichia_phage	1.9e-87	92.7
WP_047721020.1\|2081194_2081335_-	YlcG family protein	NA	NA	NA	NA
WP_047721019.1\|2081331_2081970_-	recombination protein NinG	H6WRY9	Salmonella_phage	5.7e-76	69.3
WP_071532248.1\|2081962_2082133_-	hypothetical protein	G8C7V4	Escherichia_phage	5.7e-15	69.6
WP_047721018.1\|2082125_2082575_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	5.3e-36	50.3
WP_047721017.1\|2082776_2083034_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	5.4e-25	71.4
WP_139153335.1\|2083365_2083638_-	hypothetical protein	NA	NA	NA	NA
WP_047721015.1\|2083827_2084025_-	hypothetical protein	NA	NA	NA	NA
WP_047721014.1\|2084109_2084865_-	DUF551 domain-containing protein	O64350	Escherichia_phage	4.5e-11	63.6
WP_052959187.1\|2085037_2085517_-	ead/Ea22-like family protein	NA	NA	NA	NA
WP_047721013.1\|2085513_2085783_-	hypothetical protein	NA	NA	NA	NA
WP_071458385.1\|2086060_2086573_-	hypothetical protein	K7PJM1	Enterobacteria_phage	3.7e-25	51.6
WP_047721012.1\|2086569_2086875_-	hypothetical protein	NA	NA	NA	NA
WP_047721011.1\|2086871_2087651_-	replication protein	A0A193GYX1	Enterobacter_phage	2.6e-94	64.7
WP_032435255.1\|2087647_2088376_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	7.8e-37	73.0
WP_165473733.1\|2088606_2088756_-	hypothetical protein	NA	NA	NA	NA
WP_047721010.1\|2088755_2089076_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	8.5e-36	67.9
WP_047721009.1\|2089116_2089344_-	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	2.2e-14	53.7
WP_176678789.1\|2089412_2090135_+	helix-turn-helix domain-containing protein	E7C9R0	Salmonella_phage	2.5e-75	63.2
WP_047721007.1\|2090277_2090559_+	hypothetical protein	A4KWR2	Enterobacteria_phage	3.9e-37	82.8
WP_052959190.1\|2090796_2091078_+	hypothetical protein	A0A2H4FNB7	Salmonella_phage	1.0e-08	61.7
WP_047721006.1\|2091373_2091562_+	hypothetical protein	NA	NA	NA	NA
WP_071845055.1\|2091554_2091761_+	cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	8.1e-32	95.6
WP_047721005.1\|2091840_2092842_+	hypothetical protein	A0A077KCC0	Edwardsiella_phage	6.8e-39	76.8
WP_047721004.1\|2092849_2093134_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	5.4e-34	71.3
WP_047721003.1\|2093149_2093995_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.6e-68	60.7
WP_047721002.1\|2093991_2094672_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.3e-123	92.9
WP_046878446.1\|2094668_2094827_+	DUF1317 family protein	T1SAR0	Salmonella_phage	2.2e-13	69.2
WP_043875719.1\|2094823_2095051_+	hypothetical protein	NA	NA	NA	NA
WP_047721001.1\|2095047_2095707_+	DNA methyltransferase	G8C7S6	Escherichia_phage	1.0e-115	87.7
WP_047721000.1\|2095703_2095922_+	hypothetical protein	NA	NA	NA	NA
WP_047720999.1\|2095918_2096455_+	hypothetical protein	J9Q748	Salmonella_phage	1.8e-70	70.9
WP_047720998.1\|2096451_2096643_+	DUF1382 family protein	G9L698	Escherichia_phage	6.0e-13	66.1
WP_047720997.1\|2096639_2097509_+	MmcB family DNA repair protein	A9YWY3	Burkholderia_phage	5.1e-59	41.5
WP_047720996.1\|2097505_2097730_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	5.9e-12	52.2
WP_047721168.1\|2097771_2098023_+	excisionase family protein	A0A286S2A4	Klebsiella_phage	6.0e-13	44.4
WP_047720995.1\|2098056_2099340_+	DUF3596 domain-containing protein	Q8W658	Enterobacteria_phage	7.1e-142	56.3

DBSCAN-SWA_5

2180974 : 2289492

125

Enterobacteria_phage(25.0%)

integrase,head,protease,tRNA,capsid,plate,terminase,tail,portal,holin

attL 2211826:2211843|attR 2290815:2290832

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004103400.1\|2180974_2182762_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_004103401.1\|2183031_2183598_+	hydrolase	NA	NA	NA	NA
WP_004103402.1\|2183594_2184413_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	2.2e-59	83.5
WP_004103403.1\|2184466_2184862_+	MAPEG family protein	NA	NA	NA	NA
WP_004103405.1\|2184901_2185645_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	1.5e-22	29.1
WP_016808312.1\|2185641_2186664_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_004103408.1\|2186962_2187706_-	copper homeostasis protein CutC	NA	NA	NA	NA
WP_004103409.1\|2187782_2188352_-	VOC family protein	NA	NA	NA	NA
WP_004103410.1\|2188581_2190315_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	5.7e-86	33.8
WP_004103411.1\|2190391_2191531_-	glycoside hydrolase family 88 protein	NA	NA	NA	NA
WP_004103413.1\|2191535_2193119_-	MFS transporter	NA	NA	NA	NA
WP_158414345.1\|2193195_2193381_+	hypothetical protein	NA	NA	NA	NA
WP_004103417.1\|2193484_2193913_+	universal stress protein UspC	NA	NA	NA	NA
WP_004103421.1\|2193941_2195366_-	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_004103423.1\|2195340_2196144_-	trehalose-phosphatase	NA	NA	NA	NA
WP_004103425.1\|2196302_2197283_-	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_004103427.1\|2197297_2198812_-	L-arabinose ABC transporter ATP-binding protein AraG	A0A2R8FG22	Brazilian_cedratvirus	2.6e-10	28.4
WP_004103429.1\|2198873_2199854_-	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004103431.1\|2200142_2200700_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_016808317.1\|2201247_2201790_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_032704871.1\|2202073_2203585_+	MFS transporter	NA	NA	NA	NA
WP_004103438.1\|2203631_2203883_-	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_014229869.1\|2203962_2204046_-	stress response protein AzuC	NA	NA	NA	NA
WP_032704701.1\|2204254_2205676_+	MFS transporter	NA	NA	NA	NA
WP_004103442.1\|2205725_2206364_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_004103444.1\|2206783_2207281_+	non-heme ferritin	NA	NA	NA	NA
WP_004103446.1\|2207318_2207558_-	YecH family protein	NA	NA	NA	NA
WP_004103448.1\|2207752_2208964_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_004103450.1\|2208990_2209659_-	YecA family protein	H9NBT7	Sphingomonas_phage	9.5e-05	65.5
WP_004103451.1\|2209725_2210613_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_071845063.1\|2210972_2211224_-	ogr/Delta-like zinc finger family protein	Q858U4	Yersinia_virus	1.0e-07	44.6
WP_047720983.1\|2211267_2212401_-	phage late control D family protein	B9A7A9	Serratia_phage	3.9e-144	69.5
2211826:2211843	attL	NA	NA	NA	NA
WP_047720981.1\|2212552_2213722_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	5.1e-155	70.5
WP_047720980.1\|2213721_2214237_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.2e-57	61.2
WP_047720979.1\|2214282_2214594_+\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	8.5e-17	53.3
WP_053086776.1\|2214614_2214752_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	5.8e-10	65.9
WP_047720977.1\|2214738_2217744_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	7.8e-232	47.4
WP_047720975.1\|2217759_2218251_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.3e-54	62.7
WP_047720973.1\|2218500_2219373_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_032445019.1\|2220800_2221016_-	hypothetical protein	NA	NA	NA	NA
WP_047720971.1\|2221012_2224042_-\|tail	phage tail protein I	D5LGZ2	Escherichia_phage	3.7e-24	40.7
WP_047720970.1\|2224031_2224955_-\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	8.4e-52	43.2
WP_047720969.1\|2224956_2225307_-	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	1.8e-26	54.8
WP_047720968.1\|2225303_2225891_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	5.9e-59	59.5
WP_047720967.1\|2225887_2226523_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	5.0e-56	51.0
WP_032411298.1\|2226519_2226987_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	7.0e-47	59.5
WP_158414347.1\|2226987_2227323_-	peptidase	NA	NA	NA	NA
WP_047720965.1\|2227509_2228055_-	lysozyme	Q1I0Z1	Pasteurella_virus	2.4e-30	42.5
WP_047724057.1\|2228325_2228526_-\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	7.9e-16	61.5
WP_047720963.1\|2228525_2229041_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	4.1e-40	49.4
WP_047720962.1\|2229153_2230011_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.3e-70	58.9
WP_047720961.1\|2230059_2231094_-\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	1.1e-95	49.7
WP_047720960.1\|2231103_2231943_-\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.3e-95	65.6
WP_047720959.1\|2232099_2233827_+	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	2.5e-238	69.5
WP_047720958.1\|2233820_2234882_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	8.5e-141	68.4
WP_047720957.1\|2235360_2236113_-	hypothetical protein	NA	NA	NA	NA
WP_047720956.1\|2236314_2238912_-	replication endonuclease	A0A0M4RTM8	Salmonella_phage	4.0e-192	51.6
WP_071845053.1\|2238904_2240047_-	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	8.1e-97	50.4
WP_158414348.1\|2240022_2240178_-	hypothetical protein	NA	NA	NA	NA
WP_176678787.1\|2240187_2240361_-	hypothetical protein	NA	NA	NA	NA
WP_047720953.1\|2240629_2241583_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	2.3e-89	57.9
WP_047720952.1\|2241815_2242382_-	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	2.1e-13	31.1
WP_047720951.1\|2242378_2242603_-	hypothetical protein	NA	NA	NA	NA
WP_047720950.1\|2242671_2242950_-	hypothetical protein	NA	NA	NA	NA
WP_047720949.1\|2242946_2243186_-	DUF4754 family protein	NA	NA	NA	NA
WP_071845051.1\|2243199_2243403_-	DUF4761 family protein	A0A0M5M1I3	Salmonella_phage	5.2e-15	66.1
WP_032437051.1\|2243412_2243616_-	hypothetical protein	P79674	Haemophilus_phage	8.3e-05	37.1
WP_047720948.1\|2243638_2243881_-	hypothetical protein	NA	NA	NA	NA
WP_047720947.1\|2243883_2244096_-	hypothetical protein	NA	NA	NA	NA
WP_077257946.1\|2244136_2244565_+	helix-turn-helix transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	3.7e-10	40.2
WP_047720945.1\|2244574_2245204_+	membrane protein	NA	NA	NA	NA
WP_047720944.1\|2245225_2245471_+	hypothetical protein	NA	NA	NA	NA
WP_047720942.1\|2245849_2246257_+	hypothetical protein	NA	NA	NA	NA
WP_047720941.1\|2246269_2247277_+\|integrase	tyrosine-type recombinase/integrase	Q1I119	Pasteurella_virus	3.9e-103	55.6
WP_047720940.1\|2247590_2247920_-	hypothetical protein	K7PGV5	Enterobacterial_phage	2.5e-22	50.0
WP_004178082.1\|2248236_2249724_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_047720938.1\|2250173_2251574_-	hypothetical protein	W6E8G0	Rhizobium_phage	2.8e-14	29.7
WP_047720937.1\|2251576_2253709_-	right-handed parallel beta-helix repeat-containing protein	A0A286S1P0	Klebsiella_phage	2.0e-11	36.9
WP_016809748.1\|2256860_2257241_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.3e-59	81.7
WP_017145580.1\|2257253_2257730_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	6.7e-53	67.1
WP_047720936.1\|2257716_2258190_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.2e-54	61.4
WP_047720935.1\|2258211_2261619_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	3.9e-187	41.8
WP_015370209.1\|2261688_2262072_-	hypothetical protein	A0A0M4QWT0	Salmonella_phage	2.3e-32	53.9
WP_047720934.1\|2262147_2262453_-	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
WP_047720933.1\|2262455_2262860_-\|tail	phage tail protein	Q9MCS5	Enterobacteria_phage	5.5e-32	55.7
WP_047720932.1\|2262890_2263601_-	immunoglobulin domain-containing protein	K7PHL2	Enterobacterial_phage	7.5e-85	68.2
WP_032750781.1\|2263657_2264005_-	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.3e-31	60.2
WP_047720931.1\|2264001_2264451_-	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	3.3e-62	81.9
WP_047720930.1\|2264447_2264786_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.4e-41	73.2
WP_047720929.1\|2264794_2265112_-\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	6.7e-25	54.9
WP_047720928.1\|2265189_2266428_-\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	1.0e-153	68.0
WP_032439289.1\|2266437_2267037_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	5.9e-91	83.0
WP_047720927.1\|2267029_2268256_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	8.4e-209	85.3
WP_047720926.1\|2268245_2268407_-	hypothetical protein	NA	NA	NA	NA
WP_047720925.1\|2268403_2270155_-\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	8.8e-252	72.0
WP_047720924.1\|2270158_2270656_-\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	2.5e-63	72.0
WP_032419453.1\|2270814_2271165_-	HNH endonuclease	A0A1B5FP94	Escherichia_phage	4.6e-51	80.7
WP_047720923.1\|2271225_2271471_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.6e-18	59.3
WP_047720921.1\|2271877_2272243_-	hypothetical protein	L7TH90	Pseudomonas_virus	5.5e-15	53.6
WP_047720920.1\|2272524_2272800_-	hypothetical protein	G8C7W1	Escherichia_phage	4.4e-25	70.8
WP_047720919.1\|2272807_2273437_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	1.3e-104	89.0
WP_017145564.1\|2273436_2273718_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.3e-37	80.6
WP_004121584.1\|2273704_2274100_-\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	3.2e-61	93.9
WP_047720918.1\|2274369_2275296_+	hypothetical protein	NA	NA	NA	NA
WP_047720917.1\|2275821_2276166_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	3.3e-54	83.2
WP_047720916.1\|2276184_2277165_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.1e-134	67.5
WP_047720915.1\|2277161_2277857_-	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	8.2e-76	64.7
WP_047720914.1\|2277871_2278261_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	6.9e-48	72.9
WP_047720913.1\|2278270_2279080_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.2e-115	71.5
WP_047720912.1\|2279076_2279991_-	conserved phage C-terminal domain-containing protein	H2DE83	Erwinia_phage	4.0e-30	59.6
WP_071845048.1\|2279947_2280160_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.7e-16	72.7
WP_047720911.1\|2280397_2280853_-	hypothetical protein	K7PJS5	Enterobacterial_phage	5.5e-65	85.1
WP_071845047.1\|2281111_2281381_-	helix-turn-helix domain-containing protein	D0UIL8	Aggregatibacter_phage	5.9e-14	52.1
WP_047720910.1\|2281483_2281966_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	1.3e-11	51.9
WP_047720909.1\|2282136_2283294_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	2.4e-35	28.9
WP_047720908.1\|2283610_2284528_+	recombination-associated protein RdgC	A0A1Y0SUG1	Pseudomonas_phage	1.1e-38	34.1
WP_047720907.1\|2284616_2284916_+	hypothetical protein	K7PJS4	Enterobacterial_phage	3.2e-13	46.7
WP_047720906.1\|2284915_2285704_+	hypothetical protein	C7BGF1	Burkholderia_phage	3.1e-63	52.9
WP_162556077.1\|2285700_2285862_+	hypothetical protein	NA	NA	NA	NA
WP_047720905.1\|2285858_2286203_+	hypothetical protein	NA	NA	NA	NA
WP_047720904.1\|2286195_2286513_+	hypothetical protein	Q6UAU1	Klebsiella_phage	1.3e-17	51.4
WP_047720903.1\|2286513_2286852_+	hypothetical protein	NA	NA	NA	NA
WP_047720902.1\|2287494_2287890_+	hypothetical protein	A0A1I9LJU8	Stx_converting_phage	1.2e-52	78.6
WP_047720901.1\|2288227_2288458_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_047720900.1\|2288457_2289492_+\|integrase	tyrosine-type recombinase/integrase	H9C152	Pectobacterium_phage	9.8e-126	63.7
2290815:2290832	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2589606 : 2706663

109

Enterobacteria_phage(32.73%)

integrase,head,protease,capsid,terminase,tail,portal,holin,lysis

attL 2619929:2619945|attR 2708681:2708697

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004103877.1\|2589606_2590302_+\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_004103882.1\|2590429_2591314_+	cytidine deaminase	NA	NA	NA	NA
WP_004103884.1\|2591438_2592155_+	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_004114089.1\|2592344_2593355_-	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_004103886.1\|2593370_2594891_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	1.5e-10	31.6
WP_004103888.1\|2595009_2596008_-	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_004103891.1\|2596297_2597320_-	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_004103893.1\|2597475_2598633_-	DUF418 family protein	NA	NA	NA	NA
WP_004103895.1\|2598648_2599317_-	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	6.9e-56	56.8
WP_004103897.1\|2599683_2600520_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_004114107.1\|2601098_2603072_-	catecholate siderophore receptor CirA	A0A0P0I887	Acinetobacter_phage	8.1e-12	35.8
WP_004103903.1\|2603376_2604846_-	amino acid permease	NA	NA	NA	NA
WP_047720863.1\|2605051_2605534_+	hypothetical protein	NA	NA	NA	NA
WP_016809573.1\|2605533_2606022_+	hypothetical protein	NA	NA	NA	NA
WP_004103910.1\|2606000_2606873_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_047720862.1\|2607045_2608095_+	YeiH family protein	NA	NA	NA	NA
WP_004103914.1\|2608191_2609049_+	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	6.9e-24	34.1
WP_004103916.1\|2609050_2610139_+	sugar kinase	NA	NA	NA	NA
WP_004103919.1\|2610173_2611424_-	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_004103922.1\|2611520_2612456_-	pseudouridine-5'-phosphate glycosidase	NA	NA	NA	NA
WP_047721156.1\|2612448_2613384_-	pseudouridine kinase	NA	NA	NA	NA
WP_004114117.1\|2613709_2615398_-	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_004103928.1\|2615414_2616353_-	1-phosphofructokinase	NA	NA	NA	NA
WP_047720861.1\|2616353_2617484_-	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_032704880.1\|2617814_2618996_+	sugar efflux transporter SetB	NA	NA	NA	NA
WP_004103933.1\|2619021_2619273_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_004103935.1\|2619419_2619992_+	elongation factor P-like protein YeiP	NA	NA	NA	NA
2619929:2619945	attL	NA	NA	NA	NA
WP_004103940.1\|2620307_2621774_+	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	1.5e-42	28.9
WP_004103941.1\|2621893_2622871_+	GTP-binding protein	NA	NA	NA	NA
WP_024274498.1\|2622907_2623621_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_004103943.1\|2624047_2624617_+	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	A0A1V0DZX6	Clostridioides_phage	3.1e-12	39.8
WP_004103944.1\|2624801_2626364_+	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_032704881.1\|2626434_2628240_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004103946.1\|2628249_2629344_+	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_004103948.1\|2629343_2630369_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_004103950.1\|2630370_2631960_+	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	1.4e-17	32.4
WP_004103951.1\|2631963_2632308_-	hypothetical protein	NA	NA	NA	NA
WP_004103952.1\|2632638_2633835_-	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	2.1e-23	24.4
WP_004103953.1\|2633831_2634551_-	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_004103954.1\|2634699_2636457_+	DEAD/DEAH box helicase	M4Q3N1	Vibrio_phage	4.9e-101	40.5
WP_004114143.1\|2636594_2636879_+	50S ribosomal protein L25	NA	NA	NA	NA
WP_004103956.1\|2636940_2637534_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_004103958.1\|2637614_2638373_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_004114145.1\|2638422_2639430_-	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	9.1e-84	49.2
WP_004133900.1\|2639608_2639836_+	YejL family protein	NA	NA	NA	NA
WP_004114147.1\|2639855_2641616_+	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_004122957.1\|2641872_2642256_-	hypothetical protein	Q6UAV9	Klebsiella_phage	5.2e-64	90.6
WP_004178082.1\|2642362_2643850_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_047720860.1\|2644282_2645425_-\|tail	tail fiber domain-containing protein	A0A0D4D9I5	Escherichia_phage	9.8e-18	33.3
WP_047720859.1\|2645465_2654678_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	41.6
WP_047720858.1\|2654743_2655334_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	3.0e-79	76.0
WP_126488854.1\|2655423_2655696_-	hypothetical protein	NA	NA	NA	NA
WP_047720857.1\|2655701_2656439_-	C40 family peptidase	Q6UAW4	Klebsiella_phage	8.2e-135	90.6
WP_047720856.1\|2656440_2657196_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	3.7e-130	84.5
WP_047720855.1\|2657192_2657540_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	2.0e-35	62.6
WP_047720854.1\|2657590_2660737_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	75.9
WP_071845045.1\|2660720_2661035_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	2.3e-41	76.0
WP_077257945.1\|2661055_2661484_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	8.7e-36	59.3
WP_047720853.1\|2661494_2662238_-\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	2.8e-114	85.4
WP_047720852.1\|2662244_2662643_-\|tail	tail protein	K7P7G5	Enterobacteria_phage	4.1e-56	76.5
WP_077257944.1\|2662639_2663224_-\|tail	phage tail protein	M9NZH5	Enterobacteria_phage	2.5e-78	77.8
WP_047720851.1\|2663232_2663586_-\|tail	tail attachment protein	K7P6U9	Enterobacteria_phage	1.8e-42	66.7
WP_047720850.1\|2663596_2664016_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	4.1e-22	51.5
WP_047720849.1\|2664066_2665092_-\|capsid	major capsid protein	K7P6G7	Enterobacteria_phage	2.6e-179	92.7
WP_047720848.1\|2665159_2665492_-\|head	head decoration protein	E4WL24	Enterobacteria_phage	5.1e-44	80.0
WP_047720847.1\|2665501_2666833_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.6e-171	73.2
WP_047720846.1\|2666813_2668406_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	6.3e-273	86.6
WP_015367380.1\|2668402_2668609_-	gpW family protein	K7PM10	Enterobacteria_phage	6.7e-26	88.1
WP_047720845.1\|2668608_2670531_-\|terminase	phage terminase large subunit family protein	E4WL19	Enterobacteria_phage	0.0e+00	89.7
WP_047720844.1\|2670505_2671051_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.1e-86	87.2
WP_047720843.1\|2671344_2671764_-	hypothetical protein	Q6UAS0	Klebsiella_phage	5.2e-33	53.6
WP_047720842.1\|2671763_2672096_-	hypothetical protein	NA	NA	NA	NA
WP_047720841.1\|2672186_2672372_-	hypothetical protein	NA	NA	NA	NA
WP_139153332.1\|2672828_2673086_+	hypothetical protein	NA	NA	NA	NA
WP_047720840.1\|2673869_2674100_-	hypothetical protein	NA	NA	NA	NA
WP_047720839.1\|2674330_2674798_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.7e-45	63.2
WP_047720838.1\|2674800_2675220_-	structural protein	A0A0E3GMJ2	Enterobacteria_phage	7.4e-40	55.4
WP_139153342.1\|2675206_2675536_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.1e-52	89.9
WP_047043763.1\|2675777_2675960_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_047720836.1\|2675984_2676416_+	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	7.4e-19	37.3
WP_071845044.1\|2676645_2677248_-	hypothetical protein	H9C175	Pectobacterium_phage	2.4e-76	67.5
WP_047720835.1\|2677260_2678322_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.3e-100	49.6
WP_047720834.1\|2678318_2680166_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	4.0e-202	52.4
WP_047720833.1\|2680158_2681043_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.4e-122	71.8
WP_004122994.1\|2681042_2681300_-	hypothetical protein	Q8W639	Enterobacteria_phage	3.3e-22	75.0
WP_004122995.1\|2681296_2682175_-	conserved phage C-terminal domain-containing protein	K7PLZ7	Enterobacterial_phage	1.7e-33	57.7
WP_032423246.1\|2682171_2682351_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_047721152.1\|2682352_2682997_-	phage regulatory protein/antirepressor Ant	A0A2I7RHG4	Vibrio_phage	4.3e-47	50.7
WP_032741919.1\|2683052_2683250_-	hypothetical protein	NA	NA	NA	NA
WP_047720832.1\|2683246_2683804_-	hypothetical protein	A0A1C9II13	Salmonella_phage	1.4e-65	68.2
WP_004122998.1\|2683831_2684029_-	hypothetical protein	H9C161	Pectobacterium_phage	1.6e-16	68.3
WP_176678784.1\|2684120_2684777_+	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.8e-69	58.1
WP_047721149.1\|2685565_2685937_+	hypothetical protein	Q8HAA1	Salmonella_phage	8.3e-59	92.7
WP_004123003.1\|2685993_2686821_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	3.0e-133	85.8
WP_047720831.1\|2686953_2687481_+	hypothetical protein	A0A0P0ZCH9	Stx2-converting_phage	5.1e-62	65.3
WP_047720830.1\|2687480_2687678_+	hypothetical protein	NA	NA	NA	NA
WP_047720829.1\|2688136_2688706_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.2e-79	72.5
WP_045419636.1\|2688749_2688959_+	hypothetical protein	NA	NA	NA	NA
WP_047720828.1\|2688961_2690140_+\|integrase	phage integrase SAM-like domain-containing protein	A0A2D1GN00	Marinobacter_phage	4.8e-28	28.8
WP_047720827.1\|2690393_2691674_-	hypothetical protein	NA	NA	NA	NA
WP_047720826.1\|2692478_2695844_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_004114150.1\|2695850_2697284_-	hypothetical protein	NA	NA	NA	NA
WP_024274502.1\|2697283_2697544_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_024274503.1\|2697803_2699744_-	hypothetical protein	A0A077K801	Ralstonia_phage	1.0e-54	29.2
WP_004114157.1\|2699736_2700510_-	hypothetical protein	NA	NA	NA	NA
WP_047720825.1\|2700864_2703354_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	6.6e-19	33.5
WP_127472320.1\|2704410_2704713_-	hypothetical protein	NA	NA	NA	NA
WP_004103976.1\|2704735_2705842_+	AI-2E family transporter	NA	NA	NA	NA
WP_004114163.1\|2706171_2706663_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
2708681:2708697	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3633460 : 3686598

Vibrio_phage(64.71%)

head,tRNA,plate,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004115399.1\|3633460_3634180_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_004105734.1\|3634316_3635375_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_004105744.1\|3635402_3635678_+	oxidative damage protection protein	NA	NA	NA	NA
WP_004105745.1\|3635725_3636811_+	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	4.9e-11	38.1
WP_016807921.1\|3637004_3638261_+	nucleoside permease	NA	NA	NA	NA
WP_047720685.1\|3638329_3640468_-	ornithine decarboxylase	NA	NA	NA	NA
WP_004115404.1\|3640905_3641622_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_176678782.1\|3641987_3642137_+	hypothetical protein	NA	NA	NA	NA
WP_004105750.1\|3642512_3643424_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_004105755.1\|3643636_3644530_-	PHP domain-containing protein	NA	NA	NA	NA
WP_048258012.1\|3644685_3645564_-	nucleoside deaminase	NA	NA	NA	NA
WP_004105759.1\|3645941_3646490_+	response regulator transcription factor	NA	NA	NA	NA
WP_047720684.1\|3646529_3647003_-	hypothetical protein	NA	NA	NA	NA
WP_004105763.1\|3646995_3647820_-	transcriptional regulator	NA	NA	NA	NA
WP_004105765.1\|3648457_3648862_+	VOC family protein	NA	NA	NA	NA
WP_004105767.1\|3649005_3649368_-	RidA family protein	NA	NA	NA	NA
WP_004105769.1\|3650161_3650680_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_004105771.1\|3650727_3651426_+	molecular chaperone	NA	NA	NA	NA
WP_017145424.1\|3651462_3653985_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_139153327.1\|3654035_3654836_+	hypothetical protein	NA	NA	NA	NA
WP_016807484.1\|3655080_3655650_-	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	7.2e-38	54.1
WP_016807483.1\|3655813_3656062_+	helix-turn-helix domain-containing protein	A0A2D1GNH1	Pseudomonas_phage	1.0e-33	84.0
WP_176678781.1\|3656064_3658158_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2D1GNK9	Pseudomonas_phage	5.5e-184	50.6
WP_016807481.1\|3658194_3659142_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	4.2e-139	78.5
WP_016807480.1\|3659146_3659386_+	hypothetical protein	NA	NA	NA	NA
WP_016807479.1\|3659388_3659646_+	hypothetical protein	A0A0U5KSG7	unidentified_phage	8.6e-15	48.7
WP_016807478.1\|3659655_3659943_+	hypothetical protein	C9DGL7	Escherichia_phage	3.8e-19	53.9
WP_016807477.1\|3659958_3660576_+	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	1.2e-65	61.4
WP_016807476.1\|3660656_3661154_+	hypothetical protein	NA	NA	NA	NA
WP_016807475.1\|3661146_3661734_+	hypothetical protein	NA	NA	NA	NA
WP_016807474.1\|3661730_3662285_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	1.5e-35	44.4
WP_026055841.1\|3662287_3662683_+	Middle operon regulator	A0A0C4UR27	Shigella_phage	7.2e-37	60.2
WP_016807472.1\|3662685_3663201_+	hypothetical protein	NA	NA	NA	NA
WP_016807471.1\|3663298_3663880_+	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	3.9e-39	45.7
WP_016807469.1\|3664093_3664498_+	hypothetical protein	NA	NA	NA	NA
WP_016807468.1\|3664485_3665097_+	hypothetical protein	M4MB79	Vibrio_phage	2.9e-24	39.8
WP_016807467.1\|3665093_3665324_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_016807466.1\|3665304_3665607_+	DUF2730 domain-containing protein	M1Q558	Vibrio_phage	4.3e-13	42.6
WP_016807465.1\|3665616_3665904_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	8.4e-27	64.5
WP_004114569.1\|3665906_3666182_+	hypothetical protein	NA	NA	NA	NA
WP_016807464.1\|3666171_3666750_+	DUF3486 family protein	M4MCR3	Vibrio_phage	7.6e-51	59.0
WP_016807463.1\|3666749_3668336_+	hypothetical protein	M4MHG0	Vibrio_phage	4.6e-199	70.7
WP_047720489.1\|3668335_3669907_+	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	9.6e-157	56.0
WP_139153325.1\|3669890_3670334_+	hypothetical protein	NA	NA	NA	NA
WP_016807460.1\|3670337_3671180_+\|head	phage head morphogenesis protein	M1PVV7	Vibrio_phage	2.5e-87	55.4
WP_016807459.1\|3671412_3672384_+	I protein	M1Q578	Vibrio_phage	1.8e-73	48.7
WP_016807458.1\|3672386_3673289_+\|head	Mu-like prophage major head subunit gpT family protein	M4MB71	Vibrio_phage	2.3e-102	60.9
WP_016807456.1\|3673993_3674434_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	3.2e-33	47.3
WP_047720682.1\|3674433_3674976_+	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	4.9e-60	64.2
WP_047720681.1\|3674972_3675584_+	hypothetical protein	M1PJ94	Vibrio_phage	1.0e-37	39.8
WP_047720680.1\|3675586_3675817_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_047720679.1\|3675818_3677297_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	2.5e-162	59.2
WP_047720678.1\|3677306_3677660_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_016807450.1\|3677663_3678047_+\|tail	phage tail assembly protein	A0A2P9JZJ9	Alteromonadaceae_phage	4.4e-15	41.3
WP_016807449.1\|3678145_3679957_+\|tail	phage tail tape measure protein	M4MHE6	Vibrio_phage	1.8e-69	32.6
WP_047720677.1\|3679956_3681213_+	DNA circularization N-terminal domain-containing protein	A0A2I7S9E8	Vibrio_phage	2.9e-87	41.7
WP_047720676.1\|3681205_3682297_+\|tail	phage tail protein	M4M9L5	Vibrio_phage	3.2e-90	48.8
WP_047720675.1\|3682287_3682827_+\|plate	phage baseplate assembly protein	A0A2I7S9F6	Vibrio_phage	3.0e-33	45.3
WP_019704449.1\|3682823_3683276_+	phage GP46 family protein	A0A2I7S9F0	Vibrio_phage	6.6e-26	43.4
WP_047720674.1\|3683262_3684339_+\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	6.0e-102	52.6
WP_047720673.1\|3684323_3684908_+	YmfQ family protein	A0A2I7S9L6	Vibrio_phage	2.8e-45	47.2
WP_016807442.1\|3684910_3685723_+\|tail	tail fiber protein	E5G6P0	Salmonella_phage	6.5e-32	56.1
WP_016807441.1\|3685722_3686598_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.8e-26	38.0

DBSCAN-SWA_8

3753911 : 3793174

Erwinia_phage(35.71%)

integrase,head,tRNA,capsid,plate,terminase,tail,portal,holin,lysis

attL 3762015:3762060|attR 3794802:3794847

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032729227.1\|3753911_3754925_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.4e-108	58.9
WP_001144069.1\|3755162_3755378_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_016808010.1\|3755611_3757354_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.4e-70	36.9
WP_004105908.1\|3757503_3759348_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_047720667.1\|3759588_3760233_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_047720666.1\|3760229_3761357_+	hypothetical protein	NA	NA	NA	NA
WP_004105914.1\|3761353_3761860_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
3762015:3762060	attL	NA	NA	NA	NA
WP_071845060.1\|3762217_3762436_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	1.2e-38	98.6
WP_047720665.1\|3762502_3763672_-	phage late control D family protein	Q6K1G4	Salmonella_virus	3.7e-206	96.4
WP_047720664.1\|3763668_3764154_-\|tail	phage tail protein	S4TUC3	Salmonella_phage	1.7e-83	96.9
WP_047720663.1\|3764168_3766610_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	87.6
WP_000763323.1\|3766602_3766722_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	1.4e-15	100.0
WP_047720662.1\|3766754_3767090_-\|tail	phage tail assembly protein	A0A218M4J8	Erwinia_phage	6.8e-52	98.2
WP_047720661.1\|3767153_3767672_-\|tail	phage major tail tube protein	Q37845	Escherichia_phage	5.0e-94	100.0
WP_047720660.1\|3767687_3768875_-\|tail	phage tail sheath protein	Q37844	Escherichia_phage	3.0e-211	94.4
WP_047720659.1\|3768985_3770146_-\|tail	phage tail protein	Q858V4	Yersinia_virus	7.8e-47	48.3
WP_047720658.1\|3770236_3770491_-	hypothetical protein	L0ARW5	Klebsiella_phage	1.0e-15	53.0
WP_052959183.1\|3770493_3772599_-	hypothetical protein	R9TMK5	Aeromonas_phage	1.2e-109	40.3
WP_047720657.1\|3772604_3773186_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.5e-48	50.8
WP_047720656.1\|3773193_3774102_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	7.8e-111	69.5
WP_047720655.1\|3774106_3774454_-	GPW/gp25 family protein	Q7Y4D7	Escherichia_virus	1.4e-44	75.7
WP_047720654.1\|3774450_3775092_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	4.5e-105	90.6
WP_047720653.1\|3775222_3775948_+	UPF0489 family protein	NA	NA	NA	NA
WP_047720652.1\|3776014_3776464_-	phage virion morphogenesis protein	O80313	Escherichia_phage	2.0e-67	93.3
WP_047045389.1\|3776456_3776924_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	4.2e-84	99.4
WP_077257940.1\|3776886_3777060_-\|lysis	phage lysis protein	O80311	Escherichia_phage	6.8e-24	96.5
WP_047720651.1\|3777031_3777445_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	2.8e-63	93.4
WP_032413164.1\|3777441_3777939_-	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	3.9e-88	93.3
WP_032413163.1\|3777925_3778222_-\|holin	phage holin family protein	A0A0M5M1H1	Salmonella_phage	2.9e-46	96.9
WP_015370176.1\|3778224_3778428_-\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	8.3e-29	91.0
WP_047720648.1\|3778427_3778937_-\|head	head completion/stabilization protein	A0A218M4L7	Erwinia_phage	6.2e-89	95.9
WP_047720645.1\|3779030_3779780_-\|terminase	terminase endonuclease subunit	O80305	Escherichia_phage	2.6e-112	91.2
WP_047720643.1\|3779784_3780852_-\|capsid	phage major capsid protein, P2 family	S4TUA6	Salmonella_phage	6.0e-187	93.2
WP_047720642.1\|3780927_3781782_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	1.9e-151	94.7
WP_047720640.1\|3781947_3783717_+\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	0.0e+00	97.5
WP_047720639.1\|3783716_3784763_+\|portal	phage portal protein	A0A2I8TV74	Erwinia_phage	7.7e-187	92.8
WP_047720637.1\|3785141_3785939_-	hypothetical protein	NA	NA	NA	NA
WP_047720635.1\|3786052_3786784_-	hypothetical protein	Q37850	Escherichia_phage	7.9e-122	87.2
WP_176678780.1\|3787092_3787278_-	Tum protein	A0A218M4I0	Erwinia_phage	9.2e-19	78.7
WP_176678794.1\|3787420_3789493_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	91.8
WP_047720629.1\|3789641_3789863_-	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	6.0e-33	94.5
WP_047720628.1\|3789862_3790090_-	DUF2732 domain-containing protein	A0A218M4I9	Erwinia_phage	2.4e-29	94.7
WP_047720626.1\|3790157_3790496_-	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	8.0e-53	92.9
WP_032433679.1\|3790459_3790660_-	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	3.3e-30	93.9
WP_015959030.1\|3790667_3791177_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	4.4e-87	95.9
WP_001630878.1\|3791207_3791471_-	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
WP_047720623.1\|3791600_3792176_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	1.2e-59	58.2
WP_047720621.1\|3792175_3793174_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.4e-192	98.5
3794802:3794847	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4563778 : 4657830

101

Vibrio_phage(62.16%)

head,protease,tRNA,plate,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004107369.1\|4563778_4564216_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_004107372.1\|4564260_4565202_+	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_004107374.1\|4565219_4566137_-	alpha/beta hydrolase	S4W4Z4	Pandoravirus	6.7e-17	28.1
WP_004107377.1\|4566451_4567381_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_004107380.1\|4567709_4568345_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_004107383.1\|4568341_4569244_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_123830053.1\|4569256_4572307_-	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
WP_004107391.1\|4572463_4573300_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_004107394.1\|4573428_4573641_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_004107397.1\|4573805_4574504_-	porin	NA	NA	NA	NA
WP_004107400.1\|4574726_4575569_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_047720505.1\|4575870_4576509_-	transcriptional regulator	NA	NA	NA	NA
WP_023301751.1\|4576680_4576905_+	helix-turn-helix domain-containing protein	M1PVU4	Vibrio_phage	1.5e-15	57.1
WP_047720504.1\|4576907_4578986_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2D1GNK9	Pseudomonas_phage	4.2e-168	46.1
WP_047720503.1\|4579022_4579970_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	3.0e-137	77.8
WP_004114539.1\|4579974_4580214_+	hypothetical protein	NA	NA	NA	NA
WP_047720501.1\|4580216_4580504_+	hypothetical protein	C9DGL7	Escherichia_phage	4.9e-19	53.9
WP_044348544.1\|4580519_4581137_+	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	3.4e-65	60.9
WP_016807476.1\|4581217_4581715_+	hypothetical protein	NA	NA	NA	NA
WP_052959182.1\|4581707_4582307_+	hypothetical protein	K7PHA5	Enterobacterial_phage	1.1e-12	45.5
WP_047720500.1\|4582303_4582858_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	1.1e-35	45.1
WP_047720499.1\|4582854_4583247_+	Middle operon regulator	A0A0C4UR27	Shigella_phage	3.8e-38	63.3
WP_047720498.1\|4583252_4583576_+	hypothetical protein	NA	NA	NA	NA
WP_047720497.1\|4583679_4584258_+	N-acetylmuramidase	A0A2I7S9B9	Vibrio_phage	3.3e-38	46.0
WP_047720495.1\|4584471_4584876_+	hypothetical protein	NA	NA	NA	NA
WP_047720494.1\|4584863_4585475_+	hypothetical protein	M4MB79	Vibrio_phage	3.7e-24	39.8
WP_047720492.1\|4585471_4585702_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_016807466.1\|4585682_4585985_+	DUF2730 domain-containing protein	M1Q558	Vibrio_phage	4.3e-13	42.6
WP_016807465.1\|4585997_4586285_+	hypothetical protein	A0A2I7S9D8	Vibrio_phage	8.4e-27	64.5
WP_044348586.1\|4586287_4586572_+	hypothetical protein	NA	NA	NA	NA
WP_044348588.1\|4586561_4587137_+	DUF3486 family protein	M4MCR3	Vibrio_phage	6.4e-50	56.8
WP_044348590.1\|4587133_4588723_+	hypothetical protein	M4MHG0	Vibrio_phage	1.2e-199	69.8
WP_047720489.1\|4588722_4590294_+	DUF935 domain-containing protein	A0A2I7S9K0	Vibrio_phage	9.6e-157	56.0
WP_139153325.1\|4590277_4590721_+	hypothetical protein	NA	NA	NA	NA
WP_016807460.1\|4590724_4591567_+\|head	phage head morphogenesis protein	M1PVV7	Vibrio_phage	2.5e-87	55.4
WP_016807459.1\|4591799_4592771_+	I protein	M1Q578	Vibrio_phage	1.8e-73	48.7
WP_016807458.1\|4592773_4593676_+\|head	Mu-like prophage major head subunit gpT family protein	M4MB71	Vibrio_phage	2.3e-102	60.9
WP_016807456.1\|4594380_4594821_+	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	3.2e-33	47.3
WP_016807455.1\|4594820_4595363_+	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	3.4e-61	64.2
WP_016807454.1\|4595359_4595971_+	hypothetical protein	M1PJ94	Vibrio_phage	4.6e-38	40.6
WP_016807453.1\|4595973_4596204_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_016807452.1\|4596205_4597687_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	1.6e-161	58.9
WP_016807451.1\|4597696_4598050_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_016807450.1\|4598053_4598437_+\|tail	phage tail assembly protein	A0A2P9JZJ9	Alteromonadaceae_phage	4.4e-15	41.3
WP_047720486.1\|4598535_4600329_+\|tail	phage tail tape measure protein	M4MHE6	Vibrio_phage	1.4e-63	30.3
WP_016807448.1\|4600328_4601585_+	DNA circularization N-terminal domain-containing protein	A0A2I7S9E8	Vibrio_phage	3.8e-87	41.7
WP_016807447.1\|4601577_4602669_+\|tail	phage tail protein	M4M9L5	Vibrio_phage	5.2e-93	50.1
WP_016807446.1\|4602659_4603199_+\|plate	phage baseplate assembly protein	A0A2I7S9F6	Vibrio_phage	1.0e-33	45.8
WP_016807445.1\|4603195_4603648_+	phage GP46 family protein	A0A2I7S9F0	Vibrio_phage	8.6e-26	42.8
WP_047720484.1\|4603634_4604711_+\|plate	baseplate J/gp47 family protein	A0A2I7S9E5	Vibrio_phage	2.0e-105	53.7
WP_016807443.1\|4604695_4605280_+	YmfQ family protein	M4M9M8	Vibrio_phage	2.2e-45	48.2
WP_016807442.1\|4605282_4606095_+\|tail	tail fiber protein	E5G6P0	Salmonella_phage	6.5e-32	56.1
WP_016807441.1\|4606094_4606970_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.8e-26	38.0
WP_016807439.1\|4608961_4609231_+	hypothetical protein	NA	NA	NA	NA
WP_047720482.1\|4609293_4610085_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_047720481.1\|4610096_4610594_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_004107407.1\|4610607_4611786_-	glycoside hydrolase family 88 protein	NA	NA	NA	NA
WP_004107410.1\|4611782_4612265_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA
WP_047720480.1\|4612439_4615040_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_157776753.1\|4615172_4615403_+	hypothetical protein	NA	NA	NA	NA
WP_004116804.1\|4615576_4616557_+	6-phosphofructokinase	NA	NA	NA	NA
WP_004107427.1\|4616568_4616883_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_004107430.1\|4616875_4618243_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_004107433.1\|4618229_4619072_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_024274856.1\|4619128_4619398_+	hypothetical protein	NA	NA	NA	NA
WP_004107437.1\|4619407_4619845_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_024274857.1\|4619841_4620393_+	ATPase AAA	NA	NA	NA	NA
WP_004116813.1\|4620524_4621559_+	YiiG family protein	NA	NA	NA	NA
WP_004107443.1\|4621596_4621920_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_016809579.1\|4621919_4622579_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_004107447.1\|4622679_4623228_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004107449.1\|4623303_4624299_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004107452.1\|4624413_4626537_+	alpha-galactosidase	NA	NA	NA	NA
WP_024274858.1\|4626578_4627844_+	MFS transporter	NA	NA	NA	NA
WP_004107456.1\|4627883_4628477_+	galactoside O-acetyltransferase	NA	NA	NA	NA
WP_047720479.1\|4628579_4629959_+	carbohydrate porin	NA	NA	NA	NA
WP_004107460.1\|4630369_4631380_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_004107462.1\|4631451_4632840_+	MFS transporter	NA	NA	NA	NA
WP_004116819.1\|4632943_4634308_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_004107466.1\|4634362_4634677_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_047720477.1\|4634673_4635822_-	lactaldehyde reductase	NA	NA	NA	NA
WP_047720476.1\|4635982_4636987_-	ABC transporter permease	NA	NA	NA	NA
WP_032729189.1\|4636983_4637988_-	ABC transporter permease	NA	NA	NA	NA
WP_004107475.1\|4639636_4640623_-	rhamnose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004107477.1\|4640704_4641535_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_004107479.1\|4641670_4642930_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_047720475.1\|4642926_4644393_-	rhamnulokinase	NA	NA	NA	NA
WP_004107487.1\|4644704_4645541_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_073971822.1\|4645506_4646463_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_004107493.1\|4646468_4647503_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_004107495.1\|4647794_4648415_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	3.2e-63	59.3
WP_047721119.1\|4648486_4649161_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_004107505.1\|4649253_4650627_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	4.5e-09	23.3
WP_004107514.1\|4650623_4651322_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	4.0e-06	30.3
WP_004107516.1\|4651471_4651975_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
WP_004107519.1\|4652124_4653021_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
WP_004107521.1\|4653223_4654186_+	6-phosphofructokinase	NA	NA	NA	NA
WP_004107523.1\|4654246_4654732_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_047720474.1\|4654824_4655751_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_004107529.1\|4655955_4657290_-	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	1.1e-44	30.3
WP_004107530.1\|4657299_4657830_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_10

6043356 : 6087034

Enterobacteria_phage(21.57%)

tRNA,capsid,plate,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047720298.1\|6043356_6044742_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	7.9e-46	35.1
WP_004099787.1\|6045036_6045249_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004099791.1\|6045250_6046117_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	6.5e-30	34.8
WP_004151317.1\|6047591_6047927_-	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_047720296.1\|6047939_6048179_-	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	6.3e-12	50.0
WP_047720295.1\|6048331_6048550_-	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.2e-06	46.2
WP_025269983.1\|6048546_6048738_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	6.0e-13	62.7
WP_047720292.1\|6048734_6049313_-	morphogenetic protein	M1F3E2	Salmonella_phage	9.9e-43	50.5
WP_017898877.1\|6049309_6049531_-	hypothetical protein	NA	NA	NA	NA
WP_047720291.1\|6049527_6050184_-	DNA methyltransferase	G8C7S6	Escherichia_phage	6.0e-113	87.0
WP_047671926.1\|6050180_6050609_-	hypothetical protein	M9NYX4	Enterobacteria_phage	2.6e-64	81.7
WP_023283324.1\|6050605_6051229_-	YqaJ viral recombinase family protein	S0A2A9	Cellulophaga_phage	7.9e-46	48.1
WP_014342891.1\|6051225_6051561_-	hypothetical protein	A0A0F7L7F5	uncultured_marine_virus	1.3e-10	34.3
WP_032431540.1\|6051740_6052025_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.5e-39	79.8
WP_019725103.1\|6052114_6052309_-	hypothetical protein	NA	NA	NA	NA
WP_176678792.1\|6052953_6053160_+	hypothetical protein	K7P7I0	Enterobacteria_phage	6.2e-16	65.7
WP_047720289.1\|6053182_6053650_-	hypothetical protein	NA	NA	NA	NA
WP_047720286.1\|6053646_6053970_-	hypothetical protein	NA	NA	NA	NA
WP_047721102.1\|6054018_6054717_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.2e-106	83.2
WP_004201115.1\|6054828_6055056_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004139615.1\|6055096_6055318_+	bacteriophage CII family protein	NA	NA	NA	NA
WP_047720283.1\|6055403_6056258_+	replication protein	K7PGT1	Enterobacteria_phage	3.4e-63	55.7
WP_047720282.1\|6056242_6057112_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	4.0e-96	70.2
WP_047720280.1\|6057108_6057402_+	protein ren	M1FPD5	Enterobacteria_phage	2.3e-24	62.4
WP_047720277.1\|6057955_6058381_+	hypothetical protein	NA	NA	NA	NA
WP_052959179.1\|6058377_6059001_+	hypothetical protein	Q5G8U8	Enterobacteria_phage	2.6e-12	41.1
WP_047720276.1\|6059000_6059519_+	hypothetical protein	G9L6B3	Escherichia_phage	6.7e-91	92.1
WP_052959178.1\|6059515_6059797_+	hypothetical protein	O64352	Escherichia_phage	9.1e-10	72.7
WP_125961865.1\|6060282_6060855_+	DUF551 domain-containing protein	A0A1B0V865	Salmonella_phage	2.1e-13	45.2
WP_158414337.1\|6060847_6061003_+	hypothetical protein	NA	NA	NA	NA
WP_047720274.1\|6061088_6061346_+	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	4.1e-25	72.7
WP_040239931.1\|6061546_6062002_+	hypothetical protein	K7P7B8	Enterobacteria_phage	2.3e-55	68.9
WP_047720271.1\|6062001_6062172_+	prophage protein NinE	G8C7V4	Escherichia_phage	4.3e-15	73.2
WP_047720270.1\|6062164_6062746_+	recombination protein NinG	E7C9S3	Salmonella_phage	1.3e-39	47.3
WP_047720268.1\|6062742_6062967_+	hypothetical protein	Q76H69	Enterobacteria_phage	7.5e-23	61.6
WP_047720267.1\|6062963_6063104_+	YlcG family protein	NA	NA	NA	NA
WP_012542610.1\|6063100_6063601_+	late gene antiterminator protein	G8C7V7	Escherichia_phage	8.7e-88	92.1
WP_031280382.1\|6064082_6064382_+\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	2.9e-46	99.0
WP_047720262.1\|6064378_6064921_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	1.1e-78	78.1
WP_167879619.1\|6064917_6065094_+	hypothetical protein	NA	NA	NA	NA
WP_047720260.1\|6065523_6066159_+	hypothetical protein	I6S676	Salmonella_phage	1.6e-102	80.7
WP_047720257.1\|6066190_6066676_+	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	9.7e-68	80.1
WP_047720256.1\|6066677_6068354_+\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	3.3e-248	74.1
WP_047720253.1\|6068354_6069875_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	4.0e-99	42.8
WP_047720252.1\|6069927_6070617_+\|capsid	minor capsid protein	H9C0V1	Aeromonas_phage	9.6e-61	51.3
WP_077257936.1\|6070679_6072497_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	1.2e-57	37.3
WP_047720249.1\|6072498_6072981_+	hypothetical protein	A0A2R3UAX9	Myoviridae_environmental_samples	1.3e-32	57.7
WP_047720248.1\|6072980_6074018_+	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	1.4e-84	50.3
WP_047720246.1\|6074019_6074346_+	hypothetical protein	H9C0V9	Aeromonas_phage	3.6e-10	42.5
WP_047720245.1\|6074345_6074789_+	DUF4054 domain-containing protein	A0A1X9SF97	Acinetobacter_phage	5.7e-14	40.5
WP_047720244.1\|6074791_6075355_+	hypothetical protein	H9C0W2	Aeromonas_phage	5.7e-19	33.3
WP_047720243.1\|6075351_6075720_+	hypothetical protein	Q6UJ26	Burkholderia_virus	2.1e-06	29.8
WP_047720241.1\|6075701_6076253_+	hypothetical protein	NA	NA	NA	NA
WP_047720240.1\|6076256_6077738_+	DUF3383 domain-containing protein	I2GUE7	Acinetobacter_phage	1.6e-57	33.0
WP_023304864.1\|6077737_6078181_+	hypothetical protein	NA	NA	NA	NA
WP_047720237.1\|6078357_6078888_+	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	1.8e-62	67.2
WP_047720234.1\|6078966_6079443_+	hypothetical protein	A0A068CGG2	Acinetobacter_phage	1.6e-06	31.1
WP_047720233.1\|6079644_6081543_+	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	1.7e-38	62.6
WP_047720232.1\|6081546_6082386_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	2.0e-28	33.1
WP_019725008.1\|6082387_6082693_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	3.6e-20	48.5
WP_047720230.1\|6082689_6083559_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	3.0e-27	29.8
WP_047720228.1\|6083548_6084136_+	hypothetical protein	A1Z003	Burkholderia_virus	2.9e-05	27.5
WP_047720225.1\|6084138_6084792_+	hypothetical protein	NA	NA	NA	NA
WP_047721096.1\|6084857_6085214_+	hypothetical protein	NA	NA	NA	NA
WP_047720222.1\|6085221_6086454_+\|plate	baseplate J/gp47 family protein	A0A077KGW9	Edwardsiella_phage	4.6e-106	51.0
WP_047720220.1\|6086446_6087034_+	DUF2612 domain-containing protein	A0A077K9U8	Edwardsiella_phage	1.1e-33	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP017931

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 100927

120

Salmonella_phage(86.25%)

capsid,integrase,tail,portal,terminase

attL 12703:12723|attR 35116:35136

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047719668.1\|2016_3561_+\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	2.8e-44	40.1
WP_009484919.1\|3643_3958_+	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-33	69.8
WP_047719669.1\|3968_4661_+	membrane protein	J9Q7Y7	Salmonella_phage	1.4e-99	77.6
WP_047719670.1\|4657_4909_+	hypothetical protein	NA	NA	NA	NA
WP_047719672.1\|5099_6287_-	hypothetical protein	NA	NA	NA	NA
WP_047719673.1\|6435_7101_+	AAA family ATPase	J9Q7R7	Salmonella_phage	4.1e-93	75.2
WP_047719674.1\|7105_7480_+	hypothetical protein	J9Q7G3	Salmonella_phage	9.9e-20	54.3
WP_047719675.1\|7808_8555_+	hypothetical protein	J9Q7R8	Salmonella_phage	4.4e-75	55.2
WP_047719676.1\|8593_9955_+	AAA family ATPase	J9Q7G4	Salmonella_phage	1.6e-179	69.8
WP_047719677.1\|10090_11206_+	DNA primase catalytic core, N-terminal domain protein	J9Q720	Salmonella_phage	8.9e-149	66.6
WP_047719678.1\|11271_12180_+	hypothetical protein	NA	NA	NA	NA
WP_047719679.1\|12266_12722_+	hypothetical protein	J9Q7R9	Salmonella_phage	4.6e-27	42.4
12703:12723	attL	NA	NA	NA	NA
WP_047719680.1\|12718_13183_+	DUF1653 domain-containing protein	NA	NA	NA	NA
WP_047719681.1\|13182_14511_+	DNA ligase	J9Q7G5	Salmonella_phage	4.4e-187	71.5
WP_047719682.1\|14507_14723_+	hypothetical protein	J9Q6I3	Salmonella_phage	2.2e-16	57.1
WP_047719683.1\|14877_15129_+	hypothetical protein	NA	NA	NA	NA
WP_047719685.1\|16276_16888_+	hypothetical protein	S4TP42	Salmonella_phage	6.6e-21	35.1
WP_047719686.1\|17097_17568_+	hypothetical protein	NA	NA	NA	NA
WP_077257924.1\|17746_18184_+	DUF2829 domain-containing protein	K4N0H8	Escherichia_phage	1.2e-21	43.0
WP_047719687.1\|18180_18426_+	hypothetical protein	A0A1S6UB66	Serratia_phage	2.3e-17	56.8
WP_047719688.1\|18437_18683_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	2.2e-12	42.3
WP_047719689.1\|18896_19232_+	hypothetical protein	NA	NA	NA	NA
WP_047719690.1\|19228_19744_+	hypothetical protein	NA	NA	NA	NA
WP_176678772.1\|19947_20091_-	hypothetical protein	NA	NA	NA	NA
WP_047719692.1\|20833_21325_-	hypothetical protein	NA	NA	NA	NA
WP_052959163.1\|21553_22633_+\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	1.5e-20	27.2
WP_047719694.1\|22622_22928_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_047719695.1\|23532_25503_+	hypothetical protein	J9Q7G6	Salmonella_phage	5.5e-125	44.2
WP_047719696.1\|25599_26838_+	AAA family ATPase	J9Q733	Salmonella_phage	2.8e-143	61.0
WP_052959164.1\|27015_29388_+	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	7.3e-310	67.0
WP_052959165.1\|29458_30619_+	hypothetical protein	J9Q7Z2	Salmonella_phage	1.5e-138	61.1
WP_047719697.1\|30615_31038_+	hypothetical protein	J9Q7S4	Salmonella_phage	1.2e-13	38.5
WP_047719698.1\|31475_32186_+	hypothetical protein	NA	NA	NA	NA
WP_047719699.1\|32346_32787_+	hypothetical protein	J9Q6I8	Salmonella_phage	7.8e-32	46.9
WP_047719700.1\|32853_33834_+	hypothetical protein	J9Q7Z3	Salmonella_phage	9.5e-62	45.6
WP_047719701.1\|33894_34857_+	exonuclease	J9Q7S6	Salmonella_phage	4.5e-117	64.1
WP_047719702.1\|34853_35114_+	hypothetical protein	NA	NA	NA	NA
WP_047719703.1\|35131_36169_+	recombinase	J9Q736	Salmonella_phage	6.1e-152	74.8
35116:35136	attR	NA	NA	NA	NA
WP_047719737.1\|36155_36875_-	hypothetical protein	NA	NA	NA	NA
WP_047719704.1\|36959_37163_+	hypothetical protein	NA	NA	NA	NA
WP_047719705.1\|37159_37987_+	SPFH/Band 7/PHB domain protein	Q8W654	Enterobacteria_phage	5.7e-100	78.2
WP_052959167.1\|38125_38863_+	hypothetical protein	G4KK93	Yersinia_phage	6.3e-26	33.0
WP_047719706.1\|39145_39400_+	hypothetical protein	NA	NA	NA	NA
WP_052959174.1\|39540_39747_+	hypothetical protein	NA	NA	NA	NA
WP_139153316.1\|39930_40278_+	hypothetical protein	NA	NA	NA	NA
WP_047719710.1\|40753_41878_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	2.7e-76	48.3
WP_047719711.1\|42196_42844_+	hypothetical protein	J9Q739	Salmonella_phage	6.0e-65	55.2
WP_047719712.1\|43080_44166_+	metallophosphoesterase	J9Q7S9	Salmonella_phage	1.5e-148	71.8
WP_047719713.1\|44162_46079_+	AAA family ATPase	J9Q741	Salmonella_phage	2.7e-214	61.8
WP_047719714.1\|46068_46767_+	hypothetical protein	NA	NA	NA	NA
WP_047719715.1\|46783_47356_+	hypothetical protein	J9Q7Z7	Salmonella_phage	9.8e-59	58.7
WP_047719739.1\|47438_49769_+	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	70.7
WP_052959168.1\|49864_50269_+	DUF2591 family protein	NA	NA	NA	NA
WP_047719716.1\|50282_51425_+	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	1.3e-179	80.0
WP_052959175.1\|51618_52365_+	hypothetical protein	J9Q742	Salmonella_phage	1.6e-61	51.0
WP_047719718.1\|52561_53653_+	thymidylate synthase	J9Q6J6	Salmonella_phage	3.1e-130	59.2
WP_047719719.1\|53654_54068_+	hypothetical protein	J9Q7Z8	Salmonella_phage	3.1e-14	38.4
WP_176678773.1\|54076_54541_+	dihydrofolate reductase	J9Q7T1	Salmonella_phage	5.2e-42	53.9
WP_052959171.1\|54537_55188_+	AAA family ATPase	J9Q7H4	Salmonella_phage	8.6e-27	37.7
WP_047719721.1\|55241_55649_+	hypothetical protein	J9Q743	Salmonella_phage	9.8e-13	37.6
WP_047719722.1\|55645_56188_+	3'-5' exonuclease	J9Q6J8	Salmonella_phage	3.6e-55	58.7
WP_139153317.1\|56271_57135_+	hypothetical protein	J9Q7Z9	Salmonella_phage	4.3e-26	42.1
WP_139153318.1\|57408_57825_+	hypothetical protein	NA	NA	NA	NA
WP_047719724.1\|57866_58952_+	SEL1-like repeat protein	NA	NA	NA	NA
WP_047719725.1\|59149_59761_+	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	3.4e-78	71.2
WP_047719726.1\|59943_60168_+	hypothetical protein	J9Q7H5	Salmonella_phage	1.5e-15	51.4
WP_052959161.1\|60738_61302_+	ribonuclease H	J9Q745	Salmonella_phage	1.1e-30	39.1
WP_047719727.1\|61955_62381_+	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	4.1e-54	77.3
WP_047719728.1\|62380_62536_+	DUF3927 family protein	NA	NA	NA	NA
WP_076752079.1\|62599_63349_+	Rha family transcriptional regulator	J9Q7T3	Salmonella_phage	5.9e-80	64.3
WP_047719619.1\|63435_63870_+	hypothetical protein	NA	NA	NA	NA
WP_047719620.1\|63925_64243_+	energy transducer TonB	NA	NA	NA	NA
WP_047719621.1\|64394_64688_+	hypothetical protein	NA	NA	NA	NA
WP_047719622.1\|64869_65520_-	hypothetical protein	G8C7R6	Escherichia_phage	5.2e-56	48.1
WP_047719623.1\|65529_65829_-	hypothetical protein	A0A192Y8D4	Enterobacteria_phage	3.1e-08	34.3
WP_047719624.1\|65964_66225_+	hypothetical protein	NA	NA	NA	NA
WP_047719625.1\|66221_66872_+	HD domain-containing protein	J9Q7H7	Salmonella_phage	2.4e-53	54.2
WP_047719626.1\|66975_68643_+	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	1.2e-210	64.6
WP_047719627.1\|68651_68831_+	hypothetical protein	NA	NA	NA	NA
WP_047719628.1\|68872_69484_+	hypothetical protein	NA	NA	NA	NA
WP_047719629.1\|69557_69785_+	hypothetical protein	NA	NA	NA	NA
WP_047719630.1\|69856_70177_+	hypothetical protein	J9Q750	Salmonella_phage	1.3e-41	69.8
WP_139153311.1\|70199_70580_+	hypothetical protein	NA	NA	NA	NA
WP_047719632.1\|70631_70901_+	hypothetical protein	NA	NA	NA	NA
WP_139153312.1\|72059_72254_-	hypothetical protein	NA	NA	NA	NA
WP_047719633.1\|72403_72613_+	hypothetical protein	J9Q6K7	Salmonella_phage	2.5e-20	72.9
WP_047719634.1\|72609_72978_+	hypothetical protein	NA	NA	NA	NA
WP_047719635.1\|73138_73468_+	hypothetical protein	J9Q7T7	Salmonella_phage	3.2e-14	53.3
WP_047719636.1\|73594_74035_+	hypothetical protein	Q6UAS0	Klebsiella_phage	8.7e-23	43.7
WP_047719637.1\|74138_74378_+	hypothetical protein	NA	NA	NA	NA
WP_047719638.1\|74597_75080_+	hypothetical protein	NA	NA	NA	NA
WP_047719639.1\|75669_76314_-	hypothetical protein	J9Q754	Salmonella_phage	1.3e-51	49.8
WP_139153313.1\|76945_77479_-	hypothetical protein	NA	NA	NA	NA
WP_139153314.1\|77543_77897_-	hypothetical protein	NA	NA	NA	NA
WP_047719642.1\|77942_79520_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	1.6e-212	70.9
WP_047719643.1\|79585_80299_+	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	1.7e-84	65.7
WP_047719644.1\|80282_80957_+	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	3.4e-71	64.8
WP_047719645.1\|80949_81591_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	2.9e-96	85.3
WP_047719646.1\|81580_82138_+	hypothetical protein	NA	NA	NA	NA
WP_047719647.1\|82134_83025_+	hypothetical protein	J9Q7I6	Salmonella_phage	2.1e-137	78.1
WP_047719648.1\|83034_83301_+	hypothetical protein	J9Q757	Salmonella_phage	1.0e-31	76.1
WP_047719649.1\|83470_84061_+	hypothetical protein	J9Q6D4	Salmonella_phage	6.5e-58	61.3
WP_047719650.1\|84060_85317_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.5e-229	88.5
WP_047719651.1\|85348_86923_+\|portal	phage portal protein	J9Q7R1	Salmonella_phage	5.2e-227	73.0
WP_047719652.1\|86935_87802_+	hypothetical protein	J9Q7F4	Salmonella_phage	2.1e-76	56.1
WP_047719653.1\|87831_88704_+\|capsid	phage capsid protein	J9Q710	Salmonella_phage	1.0e-131	81.4
WP_047719654.1\|88777_89221_+	Ig domain-containing protein	J9Q6D6	Salmonella_phage	2.8e-21	44.6
WP_047719655.1\|89262_89688_+	hypothetical protein	J9Q7Y3	Salmonella_phage	1.2e-42	63.6
WP_047719656.1\|89687_90521_+	hypothetical protein	J9Q7R2	Salmonella_phage	7.0e-74	48.9
WP_047719657.1\|90531_90876_+	hypothetical protein	J9Q7F6	Salmonella_phage	5.5e-33	57.0
WP_047719658.1\|90866_91361_+	hypothetical protein	J9Q711	Salmonella_phage	1.4e-34	51.2
WP_077257922.1\|91357_91741_+	hypothetical protein	J9Q6D8	Salmonella_phage	1.7e-30	44.4
WP_047719660.1\|91833_92274_+	hypothetical protein	NA	NA	NA	NA
WP_047719662.1\|93222_93540_+	hypothetical protein	J9Q7R3	Salmonella_phage	4.8e-31	66.7
WP_047719731.1\|93665_93893_+	hypothetical protein	J9Q7F7	Salmonella_phage	4.0e-24	76.7
WP_047719663.1\|93897_98400_+	tape measure protein	J9Q712	Salmonella_phage	2.7e-188	36.8
WP_047719664.1\|98446_98782_+\|tail	phage tail protein	J9Q6E1	Salmonella_phage	1.3e-42	70.0
WP_047719665.1\|98836_99535_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	2.5e-101	75.2
WP_047719666.1\|99524_100328_+	C40 family peptidase	J9Q7R4	Salmonella_phage	7.9e-115	74.8
WP_047719667.1\|100315_100927_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	3.6e-59	57.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP017932

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22910 : 48308

Escherichia_phage(40.0%)

transposase,protease,integrase

attL 21558:21572|attR 33937:33951

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
21558:21572	attL	NA	NA	NA	NA
WP_000845048.1\|22910_23924_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_063840321.1\|24218_24773_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_001334766.1\|24903_25734_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_000186237.1\|25871_26504_+	type B-3 chloramphenicol O-acetyltransferase CatB3	A0A2R8FE91	Brazilian_cedratvirus	4.1e-26	41.2
WP_001749986.1\|26588_27041_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_000679427.1\|27263_27611_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|27604_28444_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_047715689.1\|28571_29072_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|29578_30343_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001067855.1\|30497_31202_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000522996.1\|32281_32707_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|32734_33010_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294656.1\|33025_33391_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|33462_33918_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000654805.1\|35304_36273_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	7.7e-181	96.9
33937:33951	attR	NA	NA	NA	NA
WP_032491180.1\|36393_37254_+	class A extended-spectrum beta-lactamase SHV-30	A0A077SL40	Escherichia_phage	1.7e-155	99.3
WP_002210513.1\|37274_38036_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004206881.1\|38143_41041_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.5e-182	37.8
WP_000509966.1\|41135_41741_+	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
WP_004206885.1\|42323_44411_-	conjugal transfer protein TrbC	NA	NA	NA	NA
WP_004206886.1\|44423_45374_-	DsbC family protein	NA	NA	NA	NA
WP_004206887.1\|45384_46647_-	hypothetical protein	NA	NA	NA	NA
WP_077257921.1\|46691_46967_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_004206889.1\|47191_47575_-	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_004206890.1\|47654_48308_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP017929

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

40502 : 100115

uncultured_Caudovirales_phage(15.38%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139153319.1\|40502_41667_+\|transposase	IS3-like element ISKpn37 family transposase	Q716C2	Shigella_phage	1.3e-73	48.0
WP_003830760.1\|42569_43349_-	hypothetical protein	NA	NA	NA	NA
WP_000274510.1\|43402_43822_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001104877.1\|43832_44054_-	hypothetical protein	NA	NA	NA	NA
WP_000085947.1\|44053_44731_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.9e-29	37.4
WP_000334635.1\|45082_45754_+	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.5e-79	59.5
WP_000600201.1\|45933_46356_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
WP_000457553.1\|46355_47627_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.7e-157	64.2
WP_000756331.1\|47772_48744_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	9.6e-115	68.9
WP_000817638.1\|48740_49946_-	AAA family ATPase	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
WP_003830762.1\|50553_52380_+	AAA family ATPase	E5E3R2	Burkholderia_phage	1.5e-12	23.2
WP_000695683.1\|52551_52902_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.4e-20	55.2
WP_000725002.1\|53050_53482_-	hypothetical protein	NA	NA	NA	NA
WP_015059177.1\|53718_55188_-	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.8e-27	31.0
WP_000697973.1\|55189_55870_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	1.9e-32	36.5
WP_000475508.1\|56059_57445_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_001246157.1\|57473_57827_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_000168542.1\|57918_59211_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_000574019.1\|59221_62368_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	2.3e-61	22.5
WP_000758233.1\|62454_62895_+	hypothetical protein	NA	NA	NA	NA
WP_003830763.1\|63013_65467_+	Ag(+)-translocating P-type ATPase SilP	E4ZFI9	Streptococcus_phage	1.3e-80	34.9
WP_000843500.1\|65497_65695_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_001667049.1\|65725_66466_-	peptidoglycan DD-metalloendopeptidase family protein	E5G070	Clostridium_phage	8.0e-13	33.3
WP_000688485.1\|66749_67196_-	hypothetical protein	NA	NA	NA	NA
WP_047719746.1\|67430_69248_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001667050.1\|69253_70141_+	copper resistance protein B	NA	NA	NA	NA
WP_000906228.1\|70180_70561_+	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA
WP_001667051.1\|70565_71495_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_001188929.1\|71548_72229_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	2.1e-31	35.4
WP_000671200.1\|72225_73626_+	sensor histidine kinase	W8CYF6	Bacillus_phage	8.3e-19	26.7
WP_000753365.1\|73834_74269_+	hypothetical protein	NA	NA	NA	NA
WP_000091963.1\|74681_75278_+	recombinase family protein	A0A219Y912	Aeromonas_phage	1.4e-20	35.4
WP_000728912.1\|75401_76331_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.9e-75	52.8
WP_000176304.1\|76327_76939_-	DUF2913 family protein	NA	NA	NA	NA
WP_000429587.1\|76935_77331_-	hypothetical protein	NA	NA	NA	NA
WP_003830765.1\|77383_78247_-	3'-5' exoribonuclease	K7RFY5	Vibrio_phage	1.1e-26	35.4
WP_001247114.1\|78239_79355_-	DNA-binding protein	NA	NA	NA	NA
WP_004152391.1\|79590_81306_-	Tn3-like element Tn4401 family resolvase TnpR	NA	NA	NA	NA
WP_004152392.1\|81415_84445_+\|transposase	Tn3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004199214.1\|84551_85577_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152394.1\|85573_86353_+	IS21-like element ISKpn7 family helper ATPase IstB	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199234.1\|86739_87621_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_004152397.1\|87870_89190_-\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_047719748.1\|89521_90004_+	hypothetical protein	NA	NA	NA	NA
WP_000110156.1\|90077_91055_-	hypothetical protein	NA	NA	NA	NA
WP_001114211.1\|91345_91699_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-24	49.6
WP_000855178.1\|91746_92109_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_001010162.1\|92126_93878_+	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_000922626.1\|93922_95212_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	8.7e-172	74.0
WP_000065805.1\|95224_95650_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-50	70.7
WP_162862902.1\|95681_97433_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_000034288.1\|97459_97822_-	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
WP_001000741.1\|97897_98443_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_022542389.1\|99110_100115_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage