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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017802 Raoultella ornithinolytica strain MG, complete genome 6 crisprs DEDDh,WYL,DinG,cas3,csa3 0 2 7 0

Results visualization

1. NZ_CP017802
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017802_1 960708-960797 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017802_2 4526665-4526875 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017802_3 4535116-4535204 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017802_4 4645614-4645767 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017802_5 5510005-5510138 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017802_6 5710383-5710516 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017802_5 5.1|5510040|21|NZ_CP017802|PILER-CR 5510040-5510060 21 NZ_CP031796 Klebsiella pneumoniae strain INF125-sc-2279943 plasmid unnamed1, complete sequence 18410-18430 0 1.0
NZ_CP017802_6 6.1|5710418|21|NZ_CP017802|PILER-CR 5710418-5710438 21 NZ_CP031796 Klebsiella pneumoniae strain INF125-sc-2279943 plasmid unnamed1, complete sequence 18410-18430 0 1.0
NZ_CP017802_5 5.1|5510040|21|NZ_CP017802|PILER-CR 5510040-5510060 21 MN783747 Klebsiella oxytoca plasmid pIron_OXY, complete sequence 27692-27712 1 0.952
NZ_CP017802_5 5.1|5510040|21|NZ_CP017802|PILER-CR 5510040-5510060 21 NZ_CP023479 Klebsiella quasipneumoniae strain KPC142 plasmid pKQPS142a, complete sequence 42050-42070 1 0.952
NZ_CP017802_5 5.1|5510040|21|NZ_CP017802|PILER-CR 5510040-5510060 21 NZ_CP028549 Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence 241498-241518 1 0.952
NZ_CP017802_6 6.1|5710418|21|NZ_CP017802|PILER-CR 5710418-5710438 21 MN783747 Klebsiella oxytoca plasmid pIron_OXY, complete sequence 27692-27712 1 0.952
NZ_CP017802_6 6.1|5710418|21|NZ_CP017802|PILER-CR 5710418-5710438 21 NZ_CP023479 Klebsiella quasipneumoniae strain KPC142 plasmid pKQPS142a, complete sequence 42050-42070 1 0.952
NZ_CP017802_6 6.1|5710418|21|NZ_CP017802|PILER-CR 5710418-5710438 21 NZ_CP028549 Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence 241498-241518 1 0.952

1. spacer 5.1|5510040|21|NZ_CP017802|PILER-CR matches to NZ_CP031796 (Klebsiella pneumoniae strain INF125-sc-2279943 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgtaggtgtccagtcctgcc	CRISPR spacer
gtgtaggtgtccagtcctgcc	Protospacer
*********************

2. spacer 6.1|5710418|21|NZ_CP017802|PILER-CR matches to NZ_CP031796 (Klebsiella pneumoniae strain INF125-sc-2279943 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gtgtaggtgtccagtcctgcc	CRISPR spacer
gtgtaggtgtccagtcctgcc	Protospacer
*********************

3. spacer 5.1|5510040|21|NZ_CP017802|PILER-CR matches to MN783747 (Klebsiella oxytoca plasmid pIron_OXY, complete sequence) position: , mismatch: 1, identity: 0.952

gtgtaggtgtccagtcctgcc	CRISPR spacer
gtgtaggcgtccagtcctgcc	Protospacer
*******.*************

4. spacer 5.1|5510040|21|NZ_CP017802|PILER-CR matches to NZ_CP023479 (Klebsiella quasipneumoniae strain KPC142 plasmid pKQPS142a, complete sequence) position: , mismatch: 1, identity: 0.952

gtgtaggtgtccagtcctgcc	CRISPR spacer
gtgtaggcgtccagtcctgcc	Protospacer
*******.*************

5. spacer 5.1|5510040|21|NZ_CP017802|PILER-CR matches to NZ_CP028549 (Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence) position: , mismatch: 1, identity: 0.952

gtgtaggtgtccagtcctgcc	CRISPR spacer
gtgtaggcgtccagtcctgcc	Protospacer
*******.*************

6. spacer 6.1|5710418|21|NZ_CP017802|PILER-CR matches to MN783747 (Klebsiella oxytoca plasmid pIron_OXY, complete sequence) position: , mismatch: 1, identity: 0.952

gtgtaggtgtccagtcctgcc	CRISPR spacer
gtgtaggcgtccagtcctgcc	Protospacer
*******.*************

7. spacer 6.1|5710418|21|NZ_CP017802|PILER-CR matches to NZ_CP023479 (Klebsiella quasipneumoniae strain KPC142 plasmid pKQPS142a, complete sequence) position: , mismatch: 1, identity: 0.952

gtgtaggtgtccagtcctgcc	CRISPR spacer
gtgtaggcgtccagtcctgcc	Protospacer
*******.*************

8. spacer 6.1|5710418|21|NZ_CP017802|PILER-CR matches to NZ_CP028549 (Klebsiella variicola strain WCHKP19 plasmid p1_020019, complete sequence) position: , mismatch: 1, identity: 0.952

gtgtaggtgtccagtcctgcc	CRISPR spacer
gtgtaggcgtccagtcctgcc	Protospacer
*******.*************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 766416 : 777431 13 Enterobacteria_phage(87.5%) NA NA
DBSCAN-SWA_2 2278414 : 2375450 96 Klebsiella_phage(46.67%) portal,transposase,head,tail,terminase,integrase,capsid,holin,tRNA attL 2269577:2269595|attR 2349439:2349457
DBSCAN-SWA_3 3036516 : 3105496 86 Enterobacteria_phage(21.88%) head NA
DBSCAN-SWA_4 3289408 : 3300557 10 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_5 3691286 : 3761062 81 Klebsiella_phage(30.0%) portal,protease,tRNA,terminase,holin,integrase,capsid,tail,head attL 3721806:3721865|attR 3761083:3761208
DBSCAN-SWA_6 3901407 : 3909249 7 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_7 5504996 : 5574280 58 Bacillus_phage(41.67%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage