CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017183	Enterobacter hormaechei subsp. xiangfangensis strain LMG27195 chromosome, complete genome	3 crisprs	DEDDh,csa3,WYL,DinG,cas3,cas14j	0	2	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017183_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017183_1

1989798-1989921

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017183_1

>merge|NZ_CP017183|1|1989798-1989921|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACAGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP017183|1|1|1989798-1989921|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CAGACGCAAGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017183.1\|WP_003857629.1\|1998819_1999401_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP017183.1\|WP_048240912.1\|1986629_1987184_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017183.1\|WP_003857638.1\|1995112_1996024_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP017183.1\|WP_003857645.1\|1990081_1991455_-\|MdtK-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|234981
NZ_CP017183.1\|WP_045336570.1\|1979734_1980517_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293813
NZ_CP017183.1\|WP_003857662.1\|1980589_1981225_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NZ_CP017183.1\|WP_003857631.1\|1997615_1998782_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP017183.1\|WP_003857647.1\|1989121_1989592_+\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|107227
NZ_CP017183.1\|WP_045339057.1\|1987996_1988392_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182205
NZ_CP017183.1\|WP_003857632.1\|1997364_1997454_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
NZ_CP017183.1\|WP_003856899.1\|1983445_1983937_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|377529
NZ_CP017183.1\|WP_048240915.1\|1981253_1982849_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP017183.1\|WP_003857643.1\|1991680_1992322_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP017183.1\|WP_071957445.1\|1987276_1987642_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017183.1\|WP_003857634.1\|1996041_1997067_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP017183.1\|WP_023313959.1\|1999523_2000282_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP017183.1\|WP_022650936.1\|1988748_1988949_+\|cell-surface-composition-regulator-GlgS	unknown	unknown	gnl\|CDD\|179501
NZ_CP017183.1\|WP_045336562.1\|1993800_1995000_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP017183.1\|WP_048241856.1\|1983977_1985513_+\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|226048
NZ_CP017183.1\|WP_003857641.1\|1992353_1993502_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282

Protein	Function_ID	Function_description	E-value
NZ_CP017183.1\|WP_003857634.1\|1996041_1997067_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP017183.1\|WP_003857629.1\|1998819_1999401_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	1.40399e-136
NZ_CP017183.1\|WP_003857638.1\|1995112_1996024_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP017183.1\|WP_003857645.1\|1990081_1991455_-\|MdtK-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP017183.1\|WP_003857643.1\|1991680_1992322_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	5.19053e-120
NZ_CP017183.1\|WP_003857662.1\|1980589_1981225_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.47181e-91
NZ_CP017183.1\|WP_003857631.1\|1997615_1998782_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.19451e-99
NZ_CP017183.1\|WP_003857647.1\|1989121_1989592_+\|Hsp20-family-protein	gnl\|CDD\|107227	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 600-kDa structures. This elevated activity seen under heat shock conditions is retained for an extended period of time after the temperature is returned to normal. IbpA also forms multimers.	3.67422e-40
NZ_CP017183.1\|WP_045339057.1\|1987996_1988392_+\|hypothetical-protein	gnl\|CDD\|182205	PRK10040, PRK10040, hypothetical protein; Provisional.	4.04631e-15
NZ_CP017183.1\|WP_023313959.1\|1999523_2000282_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.9126e-42
NZ_CP017183.1\|WP_003856899.1\|1983445_1983937_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|377529	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2. VipA is a family of Gram-negative bacterial proteins that form part of the type VI pathogenic secretion system. Members have been variously defined as VC_A0107 family, Hcp2 and VipA, for ClpV-interacting proteins. VipB and VipA proteins interact very closely to form the shaft of the pathogenic penetrating needle system.	8.88794e-67
NZ_CP017183.1\|WP_048240915.1\|1981253_1982849_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP017183.1\|WP_045336570.1\|1979734_1980517_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293813	cd07727, YmaE-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YmaE and related proteins; MBL-fold metallo hydrolase domain. Includes the uncharacterized Bacillus subtilis YmaE and Nostoc all1228 proteins.Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. .	1.84481e-55
NZ_CP017183.1\|WP_022650936.1\|1988748_1988949_+\|cell-surface-composition-regulator-GlgS	gnl\|CDD\|179501	PRK02922, PRK02922, cell surface composition regulator GlgS.	5.34664e-29
NZ_CP017183.1\|WP_045336562.1\|1993800_1995000_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP017183.1\|WP_048241856.1\|1983977_1985513_+\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|226048	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NZ_CP017183.1\|WP_003857641.1\|1992353_1993502_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0

>NZ_CP017183.1|WP_003857647.1|1989121_1989592_+|Hsp20-family-protein
MMTLRTFPVLNDLSDSLFADRFNRIDRLFSQLTGSTPLPSTPSYNIRRLGDNRYELTLSVPGWKESELEIETVGGQLNISGKREEEKTENGEEGWIHRGISRSDFRASYSLPEHVKVTGASLENGLLAIELHQDIPEEEKPQRIAINNNPAIEHKP
>NZ_CP017183.1|WP_022650936.1|1988748_1988949_+|cell-surface-composition-regulator-GlgS
MKRQDINALKNFDFLARSFARMYALGQPVDIDAVTGNMSNKQQAWFRERYDHYRKQAERARVIELR
>NZ_CP017183.1|WP_045339057.1|1987996_1988392_+|hypothetical-protein
MKMRILLLTVSVLFNMQAGAARGRQPCSGSKGGIAHCTSDGRFVCNDGSLSQSKRFCSGYGASELPRQVKPSPSARKAQTKKRIAVKGQEQRVVENNAQFDTQPRQPTCAPLYMANKPGFTHLPICSGNQY
>NZ_CP017183.1|WP_071957445.1|1987276_1987642_+|hypothetical-protein
MPHETTSVSKQGKNVCFNITDAQGYQPADIGINPRGTPLKEKDFNFSPELTIVDGKLCIPPSFYHFPDNGRFIVEYILISKKHDEPRKFVVGVGINHGVVYNFPLTDREIARPYGSIKVSE
>NZ_CP017183.1|WP_048240912.1|1986629_1987184_+|hypothetical-protein
MTEETQDPSRIKEGGLRLLTTGEIQLAHSVFLSTIDYSKVWIHRESYLPFNLQDKNTAMTPDGEIYFRDQYCDDYSQTTDDLQHMFIHEMGHVWQREKGMNVIFRGLVSWMVSYHYILDGRLLSEYSMEQQAQIIADNFTLQTQGYNIWHRLWGSKYPTITLDGDTTESVIREQYKIALRGFPW
>NZ_CP017183.1|WP_048241856.1|1983977_1985513_+|type-VI-secretion-system-contractile-sheath-large-subunit
MSVNTETASAQGQTTVLEKEGVYASLFEKINLTPASSLGDINAFLDDAALSDAPAGERLTAAMQVFMDCIRKSGQPVEKLDKTLIDHHIAELDFQISRQLDAVMHHHEFQKVESLWRGLKQLVDSTDYRQNVKTEILDVSKEDLRQDFEDAPELIQSGLYWHTYTAEYDTPGGEPIGSVISSYEFDASPQDVALLRNISKVSAAAHMPFIGSVGPKFFLKDLMEEVAAIKDIGNYFDRAEYIKWKSFRDTDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSASFSFASNMVKSFINNGWCVQIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIEDNPGFFRVKLFAVPHFQVEGMDVNLSLVSQMPKAKA
>NZ_CP017183.1|WP_003856899.1|1983445_1983937_+|type-VI-secretion-system-contractile-sheath-small-subunit
MADSFQNEVPKARINLKLALHTGGAQKKIELPLKLLTVGDFSNGKENRPLSEREKINVNKNNFNSVLSEFNPEVNLTVPNTMAGDGSEESIKLNFSDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEKILKDPALSQELRDEMSALAPK
>NZ_CP017183.1|WP_048240915.1|1981253_1982849_-|FAD-NAD(P)-binding-protein
MKKIAIIGSGPTGIYTFYSLLNNAAPLSITVFEKADQPGVGMPYSDEDNSRLMLANIASIEIPPIFITYLDWLKQQNAARLARYNVDSEKLHDRQFLPRILLGEYFHDRFLAVAAEAKKAGFHIEVHPNAEVTDIKADADGVALSVNDAPFSRRFDLAVVATGHVWPDEDETTRAYFPSPWSGLMDAEVRACEVGIMGTSLSGLDAAMAVVMQHGRFSGKQFVVNKGSEGLKIMLMSRTGVLPEADFYCPIPYEPLSVLTDCVVASEIDKGPDGLLDRIFALMVKELELADPRWCQAIALGTLNADTLRDAWFEDRKKHGPFTWAEANLKEVERNKREKRTVAWRYTVLRLHEVVQAIVPSLNEHDRERFKSGLERVFIDNYAAIPPQSIRRLLALREAGIISVVALGDDYDLDIGSDQTVITTAKKSYRFDVFIDARGQKPLRNKDIPFPTLRKQLAGTGDDVPDVGEDYTLLAPASLRGRIAFGAIPWLMHDHPFVQGLSECAEIGKAMAEAAGKPASGVRRKLPYMEF
>NZ_CP017183.1|WP_003857662.1|1980589_1981225_+|carbonic-anhydrase
MQHIIEGFLSFQKEIFPQRKELFRSLASSQNPKALFISCSDSRLVPELVTQQEPGQLFVIRNAGNIVPPFGPEPGGVSATIEYAVVALGVTDIVICGHSNCGAMKAIADNADLEPMPAVSHWLRYSDAAKAVVEKKTWDKPIDKVNAMVQENVFAQLSNIKTHPSVAVGLRNNAIRLHGWVYDIESGKILALDKNTKSFVSLSENPEVFFE
>NZ_CP017183.1|WP_045336570.1|1979734_1980517_+|MBL-fold-metallo-hydrolase
MITLCKTCGTAYDEQPKNCPICDDERQYVPVTGQAWTDFDSLTTTHTNKWQQLEPQLFSIKTVPAFAINQRALLLRTPQGNVLWDCIANLDPATRALVDALGGISAIAISHPHYYTTMQEWAAAFNAPIYLHASDRQWVMRDSPAIRFWEEDALEIMPLVTLLRLGGHFAGGTVLHWQSGDGVLLAGDILQVTPGKDAVSFMWSYPNMLPLPARTVESLIGRLTGKTYQRLYGAFEGQNIPVNADEIVQRSGQKYIACLR
>NZ_CP017183.1|WP_003857645.1|1990081_1991455_-|MdtK-family-multidrug-efflux-MATE-transporter
MQKYMIEARQLLALAIPVIVAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRDRVAHQVRQGFWLAGFVSVLIMIVLWNAGYIIRAMHNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFGSMLTYIKHARSMRDIRNDTTFSTPDWSMLTRLTQLGLPIALALFFEVTLFAVVALLVSPLGIIDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGFRLGQGSTLDAQTAARTGLGVGVCMAVCTALFTVLLREQIALLYNDNPEVVTLASHLMLLAAIYQISDSIQVIGSGVLRGYKDTRSIFFITFIAYWVLGLPCGYILALTDLVVDRMGPAGFWMGFIIGLTSAAIMMMLRMRFLQRQPSTVILQRAAR
>NZ_CP017183.1|WP_003857643.1|1991680_1992322_+|riboflavin-synthase
MFTGIVQGTAKVVSIDEKPNFRTHVVELPEYMLDGIETGASIAHNGCCLTVTEINGNQISFDLMKETLRITNLGELVVGDIINVERAAKFSDEIGGHLMSGHIMTTAEVAKIVTSENNRQIWFKVQDPSLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLQRTTLGAKKLGQRVNIEIDPQTQAVVDTVERVLAAKEAAIIKTVEEE
>NZ_CP017183.1|WP_003857641.1|1992353_1993502_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWSRIVSELLGRAGITINGSSPSDPQIKHPDFFKRVLQEGSLGLGESYMDGWWECERLDMFFSSVLRAGLEKQLPRHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPLMQYSCGYWKKATTLEEAQQDKLQLICDKLQLQPGMRVLDIGCGWGGLAWFMAKNYGVSVVGVTISAEQQKMAQERCLGLDVDIRLQDYRDLNEQFDRIVSVGMFEHVGPKNYKTYFEVADRNLKPDGIFLLHTIGSKRTDNNVDPWINKYIFPNGCLPSVRQIANASEPHFIVEDWHNFGADYDTTLMAWHERFQAAWPEIADNYSERFKRMFSYYLNACAGAFRARDIQLWQVVFSRGIEHGLRVAR
>NZ_CP017183.1|WP_045336562.1|1993800_1995000_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPRKGFLVWLGGLSVLGFLATDMYLPAFAAMQEDLQTPAAAISASLSLFLAGFAFAQLLWGPLSDRFGRKPVLLLGLAIFAAGCLGMLWVRDAAWLLALRFIQAVGVCAAAVTWQALVTDYYPASRTNRIFATIMPLVGLSPALAPLLGSWILAHFDWQAIFATLFAITLVLMLPAFGLKPAHKKETHPDAKPITFTSLLRSKAYRGNVLIYAACSASFFAWLTGSPFILHDMGYSPAAIGLSYVPQTIAFLVGGYGCRAALQKWEGQQMLPWLLVLYALSVIATWAVGFIPDAGLAEILIPFCVMAIANGAIYPIVVAQALRPFPQATGRAAALQNTLQLGLCFLASLVVSALIATPLLTTTSVMLITVALAGLGYRMQSSALREQNDNAQTETSHA
>NZ_CP017183.1|WP_003857638.1|1995112_1996024_+|LysR-family-transcriptional-regulator
MWSDYSLEVVDAVARNGSFTGAAQELHRVPSAISYTVRQLEAWLAVPLFERRHRDVELTPAGAWFLKEGRSVIKKMQITREQCQQIANGWRGHLAIAVDNIVKPERTRQMIVDFYRHFSDVELRVSQEVFNGVWDALADGRAEMAIGATQAIPVGGRYAFRDMGMLSWTCVVARDHPLAALEGPLSDDTLRNWPSLVLEDTSRSLPKRITWLLDNQRRVVAPDWESSATCLSAGLCVGMVPVHFARPRIDAGEWVALTLENPFPDAACCLTWQQNDVSPAMAWLLDYLGDSETLNREWLREPA
>NZ_CP017183.1|WP_003857634.1|1996041_1997067_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNIEKQRAYLSMMAQKRVDGLLVMCSEYPESVLSMLEEYRHIPMVVMDWGEARADFTDSVIDNAFEGGYMAGRYLVERGHREIGVIPGPLERNTGAGRLAGFMKAMEEALITVPENWIVQGDFEPESGYRAMQQIVSQPHRPTAVFCGGDIMAMGALCAADELGLRVPQDISVIGYDNVRNARFFTPALTTIHQPKDSLGETAFNMLLDRIVNKREQSQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP017183.1|WP_003857632.1|1997364_1997454_+|YnhF-family-membrane-protein
MSTDLKFSLFTTIVVLALIVAGGLTAALH
>NZ_CP017183.1|WP_003857631.1|1997615_1998782_+|MFS-transporter
MKINFPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAIGVMVGAPLMTLLLSHRARRNALIFLMAIFTLGNVFSAISPDYTTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTIANIGGVPAATWLGEAIGWRMSFLATAGLGVVAMVALFFSLPKGSAGERPEVRKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLHDITHATPLFVTAMLVLIGVGFSIGNYLGGKFADRSVSGTLKGFLTLLIVIMVAIPWLARNEVGAAIAMVVWGAATFAVVPPLQMRVMRVAHEAPGLSSSVNIGAFNLGNALGAAAGGAVISGGLGYSFVPVMGAIIAALGLLLVIMSGRKQPQAVCTAE
>NZ_CP017183.1|WP_003857629.1|1998819_1999401_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTDFEGKTLEEIVRSSDGGVFNNAAQVWNHTFYWHCLAPNAGGEPDGELAAAINAAFGSFADFKAKFTDAAVKNFGSGWTWLVKEADGKLAIVSTSNAGTPLTTSATPLMTVDVWEHAYYIDYRNARPNYLEHFWALVNWEFVAKNFAA
>NZ_CP017183.1|WP_023313959.1|1999523_2000282_-|C40-family-peptidase
MARITKISMTLCALLFTTLSFTPAANASEQARHSAVQKTHLAKSTERKKKTTSKTVKKKITAQTKKTASSKTKTLRSGTHKTTRTTASLVNEKCTVRKGHKTKCAKVTKLADVHKARMQKAQKTAMNKLMGQIGKPYRWGGTSPRTGFDCSGLVYYAYKDLVKFRIPRTANEMYHLRDAAPVNRGELQNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQDIQITSLSEDYWVRHYVGARRVMTPKTIR

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Crispr_ID: NZ_CP017183_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017183_2

3267499-3267611

Orphan

Consensus_repeat	Method
GGCTGCGGCTGCTGAACAGGCTGTGGCTGATGCACTGGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017183_2

>merge|NZ_CP017183|2|3267499-3267611|CRISPRCasFinder
GGCTGCGGTTGTTGTACCGGCTGCGGCTGCTGAACAGGCTGTGGCTGATGCACTGGCTGCGGCTGCTGAACAGGCTGTGGCTGATGCACTGGCTGCGGCTGCTGAACAGGCTG

>NZ_CP017183|2|2|3267499-3267611|CRISPRCasFinder
GGCTGCGGTTGTTGTACCGGCTGCGGCTGCTGAACAGGCTG	TGGCTGATGCACTGGCTGCGGCTGCTGAACA
GGCTGTGGCTGATGCACTGGCTGCGGCTGCTGAACAGGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017183.1\|WP_003861323.1\|3268284_3269046_+\|sulfate-transporter-CysZ	unknown	unknown	gnl\|CDD\|179898
NZ_CP017183.1\|WP_003861339.1\|3259342_3259702_+\|putative-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|369180
NZ_CP017183.1\|WP_003861328.1\|3264686_3264902_-\|DUF3820-family-protein	unknown	unknown	gnl\|CDD\|226061
NZ_CP017183.1\|WP_003861321.1\|3269209_3270181_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP017183.1\|WP_003861330.1\|3263694_3264690_+\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|372642
NZ_CP017183.1\|WP_045896678.1\|3274944_3276039_-\|sulfate/thiosulfate-ABC-transporter-ATP-binding-protein-CysA	unknown	unknown	gnl\|CDD\|182778
NZ_CP017183.1\|WP_023314613.1\|3270801_3272529_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	unknown	unknown	gnl\|CDD\|183017
NZ_CP017183.1\|WP_003861311.1\|3273965_3274877_-\|cysteine-synthase-CysM	unknown	unknown	gnl\|CDD\|236972
NZ_CP017183.1\|WP_003861316.1\|3272569_3273079_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|181859
NZ_CP017183.1\|WP_023295106.1\|3259724_3260090_+\|putative-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|369180
NZ_CP017183.1\|WP_000487600.1\|3270498_3270756_+\|phosphocarrier-protein-Hpr	unknown	unknown	gnl\|CDD\|182777
NZ_CP017183.1\|WP_003861336.1\|3260142_3261558_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP017183.1\|WP_071524134.1\|3270241_3270427_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017183.1\|WP_003861341.1\|3255297_3256485_+\|nucleoside-permease-NupC	unknown	unknown	gnl\|CDD\|224883
NZ_CP017183.1\|WP_048240422.1\|3273123_3273960_-\|pyridoxine/pyridoxal/pyridoxamine-kinase	unknown	unknown	gnl\|CDD\|181269
NZ_CP017183.1\|WP_003861333.1\|3262331_3262673_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379537
NZ_CP017183.1\|WP_003861305.1\|3276028_3276904_-\|sulfate/thiosulfate-ABC-transporter-permease-CysW	unknown	unknown	gnl\|CDD\|183225
NZ_CP017183.1\|WP_069597567.1\|3264903_3266919_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP017183.1\|WP_032659683.1\|3256530_3258720_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP017183.1\|WP_003861331.1\|3262663_3263605_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131

Protein	Function_ID	Function_description	E-value
NZ_CP017183.1\|WP_003861323.1\|3268284_3269046_+\|sulfate-transporter-CysZ	gnl\|CDD\|179898	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated.	1.83767e-153
NZ_CP017183.1\|WP_003861339.1\|3259342_3259702_+\|putative-DNA-binding-transcriptional-regulator	gnl\|CDD\|369180	pfam07037, DUF1323, Putative transcription regulator (DUF1323). This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. This family appears to have an HTH domain and is therefore likely to act as a transcriptional regulator.	3.41815e-51
NZ_CP017183.1\|WP_003861328.1\|3264686_3264902_-\|DUF3820-family-protein	gnl\|CDD\|226061	COG3530, COG3530, Uncharacterized protein conserved in bacteria [Function unknown].	1.18467e-32
NZ_CP017183.1\|WP_003861321.1\|3269209_3270181_+\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	1.30532e-179
NZ_CP017183.1\|WP_003861330.1\|3263694_3264690_+\|bile-acid:sodium-symporter	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	1.2542e-122
NZ_CP017183.1\|WP_045896678.1\|3274944_3276039_-\|sulfate/thiosulfate-ABC-transporter-ATP-binding-protein-CysA	gnl\|CDD\|182778	PRK10851, PRK10851, sulfate/thiosulfate ABC transporter ATP-binding protein CysA.	0
NZ_CP017183.1\|WP_023314613.1\|3270801_3272529_+\|phosphoenolpyruvate-protein-phosphotransferase-PtsI	gnl\|CDD\|183017	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI.	0
NZ_CP017183.1\|WP_003861311.1\|3273965_3274877_-\|cysteine-synthase-CysM	gnl\|CDD\|236972	PRK11761, cysM, cysteine synthase CysM.	0
NZ_CP017183.1\|WP_003861316.1\|3272569_3273079_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|181859	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional.	9.69006e-108
NZ_CP017183.1\|WP_023295106.1\|3259724_3260090_+\|putative-DNA-binding-transcriptional-regulator	gnl\|CDD\|369180	pfam07037, DUF1323, Putative transcription regulator (DUF1323). This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. This family appears to have an HTH domain and is therefore likely to act as a transcriptional regulator.	1.74412e-48
NZ_CP017183.1\|WP_000487600.1\|3270498_3270756_+\|phosphocarrier-protein-Hpr	gnl\|CDD\|182777	PRK10850, PRK10850, phosphocarrier protein Hpr.	1.90054e-43
NZ_CP017183.1\|WP_003861336.1\|3260142_3261558_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP017183.1\|WP_003861341.1\|3255297_3256485_+\|nucleoside-permease-NupC	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	2.98288e-161
NZ_CP017183.1\|WP_048240422.1\|3273123_3273960_-\|pyridoxine/pyridoxal/pyridoxamine-kinase	gnl\|CDD\|181269	PRK08176, pdxK, pyridoxine/pyridoxal/pyridoxamine kinase.	0
NZ_CP017183.1\|WP_003861333.1\|3262331_3262673_+\|hypothetical-protein	gnl\|CDD\|379537	pfam14282, FlxA, FlxA-like protein. This family includes FlxA from E. coli. The expression of FlxA is regulated by the FliA sigma factor, a transcription factor specific for class 3 flagellar operons. However FlxA is not required for flagellar function or formation.	1.59127e-07
NZ_CP017183.1\|WP_003861305.1\|3276028_3276904_-\|sulfate/thiosulfate-ABC-transporter-permease-CysW	gnl\|CDD\|183225	PRK11602, cysW, sulfate/thiosulfate ABC transporter permease CysW.	0
NZ_CP017183.1\|WP_069597567.1\|3264903_3266919_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP017183.1\|WP_032659683.1\|3256530_3258720_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	6.12703e-79
NZ_CP017183.1\|WP_003861331.1\|3262663_3263605_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.3102e-66

>NZ_CP017183.1|WP_069597567.1|3264903_3266919_-|NAD-dependent-DNA-ligase-LigA
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAKPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSVDNLSWCCELKLDGLAVSILYENGVMVRAATRGDGTTGEDITTNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAGSLRQLDTRITAKRPLTFFCYGVGILEGGDLPDTHLGRLMQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPADTRAIEFPAHCPVCGSDVERVEGEAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGLDRMGPKSAQNIVNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEKATIDELQKVPDVGIVVATHVFNFFAEESNREVIGKLLEQGIHWPAPVVVNAEEIDSPFAGKTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEIIDEAEMMRLLGE
>NZ_CP017183.1|WP_003861328.1|3264686_3264902_-|DUF3820-family-protein
MEKEQLVEIANTEMPFGKYKGRRLIDLPEEYLLWFARKDEFPAGRLGELMAITLLIKTEGLTQLVQPLKRP
>NZ_CP017183.1|WP_003861330.1|3263694_3264690_+|bile-acid:sodium-symporter
MKLFRILDPFTLTLIGVVLLASFFPARGSFVPVIEGLTTAAIALLFFMHGAKLSREAIIAGGSHWRLHLWVMCSTFILFPVLGVLFAWWAPVNVDPALYTGFLYLCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFVSPLLVGLLMNMHGAEGNLEQVGKICLQLLLPFVLGHLSRPWIGEFVAKHKKWIGKTDQSSILLVVYTAFSEAVVNGIWHRVGAGSLLFIVVVSIVLLAIVIAVNVFVARKCGFNKADEITIVFCGSKKSLANGIPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKAQTEKLAQEETHAAKV
>NZ_CP017183.1|WP_003861331.1|3262663_3263605_-|LysR-family-transcriptional-regulator
MNYSLRQLRVFVTVAQARSFSRAGEIIGLSQSAVSHSVKELETQTGVKLLDRTTREVVLTEAGQQLAMRLERLLDELNSTLRDVGRLGQQLSGTVRVAASQTISAHLIPQCIAESNHRYPDIDFVLHDRPQQWVLESIRQGDVDFGIVIDPGAVSDLECEVVLSEPFLLLCRDDDPLASLPQVAWQALQGANLVLQDYASGSRPLIDAALTAQGVKATIVQEIGHPATLFPMVEAGIGISVLPALALPLPQGSRLTVKRFVPCVERQLMLVRRKNRSLSGAAHACWDVVRMQAERLMEARTRDPLFNETNNQT
>NZ_CP017183.1|WP_003861333.1|3262331_3262673_+|hypothetical-protein
MTTLKPVSLSAMEIGSVDNSSGGNDIASQITRLTKQITKVTQQLKEVAMGDATAEEKQKQQELLESQLAMLQAQLAQLQRQQAEEAMPKQEKGEAVAEGINKPSAEHQINIYV
>NZ_CP017183.1|WP_003861336.1|3260142_3261558_-|glutamate--tRNA-ligase
MKIKTRFAPSPTGYLHVGGARTALYSWLFARHNNGEFVLRIEDTDLERSTPEAIEAIMDGMNWLNLAWDEGPYFQTKRFDRYNAVIDEMLVAGTAYKCYCSRERLDALREEQMAKGEKPRYDGRCRHDHSEHAADEPCVVRFANPQDGSVIFDDQIRGPIEFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALNAPVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWAHGDQEIFSREEMIELFSLNSVSKSASAFNTDKLLWLNHHYINTMQPEYVATYLQWHIEQANIDTRTGPELADLVKLLGERCKTLKEIAESCRYFYEEFDAFDADAAKKHLRPVARQPLEVVRDKLEAITEWTAENVHHAIQATADELEIGMGKVGMPLRVAVTGAGQSPALDVTVHAIGKSRSVARINKALDFIAERESQQ
>NZ_CP017183.1|WP_023295106.1|3259724_3260090_+|putative-DNA-binding-transcriptional-regulator
MTTEELADSLGVARQTVNRWIRQKGWKTEGINGVKGGRARVICIDAHVKEHIISLPAIRNRRAVYHVAESPSHYGVATSSSLLPQIIDSLENMTTVEQERLHKLLAREGLQGFLTRLGIAE
>NZ_CP017183.1|WP_003861339.1|3259342_3259702_+|putative-DNA-binding-transcriptional-regulator
MIKERMTPEELALLTGYSRQTINKWVRKEGWITSPKPGVQGGKARLVHVNEKVRDFIRSARRATETPELPDTYHEGSLHALLLTLANEMTPEEQKQMTSLLLREGITGLLQRLGIRDQR
>NZ_CP017183.1|WP_032659683.1|3256530_3258720_-|EAL-domain-containing-protein
MNRKIYNNVKIFMIVLALSLITIPFSRYISPRAIVNENDVYLAWLPLSAMLAIVLLFGRRAIIPLLIGFSVTNIYYFDLALLQSSVLLICQTFAVFAACGVIRLMLGKRWRHSIPNKYIGIRIFWLGFVVPVGIKLSMYLAGYLFDFPVTISSYFGEGSAIYNVIDIQSLICAALIFTMMFYYPLRMIINPRYARTFWRRSVKPLFCHKKVLFIVVWLMLLVSMIAILCAPFESQFIAGYLMPIVFILFTLGIGRLSYALISLLWAASALMLLTYNYNFLNGVESGHSLSFILSVLISFAICLLYMSRIYQKSEWLKQGWQERALTDPLTGLPNIRALEVFLQHHPEAKICCLRLDNLEFLSRHYGILMRVHCKKMITASLQPLLQKDEKLFQLPGSELVVVLLGPGTAERLQYMVDHLNSRKIVWNKTELDIEFGASWGEVPDGESLHHTLGQLSWLSEQSCGGHNVLALTNSLDDVSGQTTDRVLMLARIKRALDIGGLHLYAQPIHNARGEGYFEILSRLESDGEIITPDRFIPLIAQFNLSHRFDLNVLEKLLMWMRSHPSGRAGTRFSVNLMPLTLMQNEIAAEIIALFERYAIAPQNIIIEITEEQAFSDSGSSIKNIQQLRDYGFRIAIDDFGTGYANFERLKRLEADIIKIDGCFVKDICTDSMDAMIVQSICNMAKTKSLCVVAEYVETAEQREMLLRFGVDYLQGYLIGKPQPLAALEA
>NZ_CP017183.1|WP_003861341.1|3255297_3256485_+|nucleoside-permease-NupC
MDRVLHFVLALVVVTALALLVSTDRKKIRIRYVVQLLVIEVLLAWFFLNSNVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFISALIGILQHIRVLPVVIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGKMSRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVDASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFAAVLGISFQGILGYIFYPVAWVMGVPAHEALQVGSIMATKLVSNEFVAMMDLQKIASTLSPRAEGILSVFLVSFANFSSIGIIAGAIKGLNEEQGNVVSRFGLKLVYGSTLVSVLSASIAALVL
>NZ_CP017183.1|WP_003861323.1|3268284_3269046_+|sulfate-transporter-CysZ
MVSTSSSAPRSGVWYFSQGWKLVSLPGIRRFVILPLLINIILMGGAFWWLFTRLETWIPSLMSYVPDWLQWLDYLLWPIAVISVLLVFGYFFSTIANWIAAPFNGLLAEQLEARLTGATPPDTGVLGLVKDLPRIMKREWQKFAWYLPRAIVLLILYFVPGIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTQKVANMQFGALTSLFTMIPFLNLFIMPVAVCGATAMWVDCYRAKHALWK
>NZ_CP017183.1|WP_003861321.1|3269209_3270181_+|cysteine-synthase-A
MSKIYEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPAKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVSRYIKGTKGKKDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVAITNEEAISTARRLMDEEGILAGISSGAAVAAALKLLEDEIFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ
>NZ_CP017183.1|WP_071524134.1|3270241_3270427_-|hypothetical-protein
MVSADVSIVIKHYAVKARLEPNHKIDSAALFRSPINFAHQNNCWFKYQTQRGEAMPGGVKL
>NZ_CP017183.1|WP_000487600.1|3270498_3270756_+|phosphocarrier-protein-Hpr
MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE
>NZ_CP017183.1|WP_023314613.1|3270801_3272529_+|phosphoenolpyruvate-protein-phosphotransferase-PtsI
MISGILASPGIAFGKALLLKEDEIVIDRKKISADKVDQEVERFLSGRAKASAQLEAIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKGMTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLAIIDLSAIQDEVILVAADLTPSETAQLNLNKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNVVYVNPTNDVIEQLRAVQEQVATEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVDGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAVRIAMDRKEILRDQVRAILRASAFGKLRIMFPMIISVEEVRALKKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFSIGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVNKFIEEKTIC
>NZ_CP017183.1|WP_003861316.1|3272569_3273079_+|PTS-glucose-transporter-subunit-IIA
MGLFDKLKSLVSDDKKDSGTIEIVAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGIELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK
>NZ_CP017183.1|WP_048240422.1|3273123_3273960_-|pyridoxine/pyridoxal/pyridoxamine-kinase
MEMILFRDNTRAQQTDIVAVQSQVVYGSVGNSIAVPNIRTHRLNVTAVPTVLFSNTPHYDTFYGGVIPDEWFSGYLKALGEREILRELKAVTTGYMGSASQIVLLAQWLKAIKVQHPDLLVLVDPVIGDIDSGMYVKPDIPEAYREHLLPLAQGITPNVYELEVLSGKPCRTPESAIAAAQGLLSNSLKWVAITSAPVADDPQNIHVVLVSEEGVTVSAHPRVETDLKGTGDLFCSELVSGIVGGKTVADAIRMAGDRVTDVMIYTQSKGYDELILPA
>NZ_CP017183.1|WP_003861311.1|3273965_3274877_-|cysteine-synthase-CysM
MNTLEHTIGNTPLVKLQRMGCDNGSEIWVKLEGNNPAGSVKDRAALSMIVQAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVSKEQGMEGARDLALAMAERGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTAGRITHFVSSMGTTGTITGVSRFLREQDKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNAQLVDQVLDIHQREAENTMRELAVREGIFCGVSSGGAVAGAIRVAESTPGAVVVAIICDRGDRYLSTGVFGEESYSQGAGI
>NZ_CP017183.1|WP_045896678.1|3274944_3276039_-|sulfate/thiosulfate-ABC-transporter-ATP-binding-protein-CysA
MSIEIANIKKSFGRTQVLNDISLDVPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPDAAAIKAKVTKLLEMVQLAHLADRFPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELQFTSVFVTHDQEEAMEVADRVVVMSQGNIEQVDEPEQLWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTSAHQGPVDLFLRPWEVDVSRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYTEPLTVVMRDDEPPHRGERLFVGLQHARIYHGNERIETREDIALAESA
>NZ_CP017183.1|WP_003861305.1|3276028_3276904_-|sulfate/thiosulfate-ABC-transporter-permease-CysW
MAEVTQLKRYDAPRINWGKWFLIGTGVLVSAFILVVPMVYIFVQAFSKGIMPALQNLADPDMLHAIWLTVMIALITVPVNLVFGVLLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHDLQIMFAWPGMVLVTVFVTCPFVVRELVPVMLSQGSHEDEAAVLLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAILTLFLKSVVQWRLENQEKRQHQEGNHEH

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Crispr_ID: NZ_CP017183_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017183_3

4131612-4131692

Orphan

Consensus_repeat	Method
GGTCTGGTGCCCTCACCCCCAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017183_3

>merge|NZ_CP017183|3|4131612-4131692|CRISPRCasFinder
GGTCTGGTGCCCTCACCCCCAGCCTCTCTCCCACGGGGAGAGGGGAGCATTTGTTAAGGTCTGGTGCCCTCATCCCCAGCC

>NZ_CP017183|3|3|4131612-4131692|CRISPRCasFinder
GGTCTGGTGCCCTCACCCCCAGCC	TCTCTCCCACGGGGAGAGGGGAGCATTTGTTAA
GGTCTGGTGCCCTCATCCCCAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017183.1\|WP_003860426.1\|4138368_4138632_+\|peroxide/acid-stress-response-protein-YhcN	unknown	unknown	gnl\|CDD\|369322
NZ_CP017183.1\|WP_023323796.1\|4123375_4124041_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185202
NZ_CP017183.1\|WP_023323797.1\|4124209_4124776_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|185201
NZ_CP017183.1\|WP_023323800.1\|4128037_4128715_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185202
NZ_CP017183.1\|WP_003860433.1\|4131721_4132846_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP017183.1\|WP_003860436.1\|4130535_4130928_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NZ_CP017183.1\|WP_003860424.1\|4138691_4138964_-\|barstar-family-protein	unknown	unknown	gnl\|CDD\|225346
NZ_CP017183.1\|WP_003860434.1\|4130943_4131372_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
NZ_CP017183.1\|WP_003860430.1\|4135064_4136132_+\|outer-membrane-stress-sensor-serine-endopeptidase-DegS	unknown	unknown	gnl\|CDD\|182820
NZ_CP017183.1\|WP_003860438.1\|4129589_4130228_-\|stringent-starvation-protein-A	unknown	unknown	gnl\|CDD\|236537
NZ_CP017183.1\|WP_003860432.1\|4133035_4133434_+\|DUF1043-family-protein	unknown	unknown	gnl\|CDD\|236953
NZ_CP017183.1\|WP_023323799.1\|4127204_4127909_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236632
NZ_CP017183.1\|WP_003860428.1\|4137519_4137990_+\|transcriptional-regulator-ArgR	unknown	unknown	gnl\|CDD\|179922
NZ_CP017183.1\|WP_003860429.1\|4136183_4137122_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235340
NZ_CP017183.1\|WP_032627961.1\|4122505_4123177_-\|DUF1120-domain-containing-protein	unknown	unknown	gnl\|CDD\|185202
NZ_CP017183.1\|WP_048241925.1\|4129086_4129584_-\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|225517
NZ_CP017183.1\|WP_003860422.1\|4139009_4140464_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP017183.1\|WP_003860418.1\|4140550_4142518_-\|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB	unknown	unknown	gnl\|CDD\|182600
NZ_CP017183.1\|WP_048241746.1\|4124772_4127190_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|237937
NZ_CP017183.1\|WP_003860431.1\|4133604_4134972_+\|serine-endoprotease-DegQ	unknown	unknown	gnl\|CDD\|182262

Protein	Function_ID	Function_description	E-value
NZ_CP017183.1\|WP_003860426.1\|4138368_4138632_+\|peroxide/acid-stress-response-protein-YhcN	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	5.22921e-17
NZ_CP017183.1\|WP_023323796.1\|4123375_4124041_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185202	PRK15302, PRK15302, hypothetical protein; Provisional.	1.67443e-70
NZ_CP017183.1\|WP_023323797.1\|4124209_4124776_-\|outer-membrane-protein	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	5.89937e-91
NZ_CP017183.1\|WP_023323800.1\|4128037_4128715_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185202	PRK15302, PRK15302, hypothetical protein; Provisional.	1.13701e-81
NZ_CP017183.1\|WP_003860433.1\|4131721_4132846_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	0
NZ_CP017183.1\|WP_003860436.1\|4130535_4130928_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	2.49838e-83
NZ_CP017183.1\|WP_003860424.1\|4138691_4138964_-\|barstar-family-protein	gnl\|CDD\|225346	COG2732, COG2732, Barstar, RNAse (barnase) inhibitor [Transcription].	7.41096e-28
NZ_CP017183.1\|WP_003860434.1\|4130943_4131372_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	3.93949e-106
NZ_CP017183.1\|WP_003860430.1\|4135064_4136132_+\|outer-membrane-stress-sensor-serine-endopeptidase-DegS	gnl\|CDD\|182820	PRK10898, PRK10898, serine endoprotease DegS.	0
NZ_CP017183.1\|WP_003860438.1\|4129589_4130228_-\|stringent-starvation-protein-A	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	7.17807e-157
NZ_CP017183.1\|WP_003860432.1\|4133035_4133434_+\|DUF1043-family-protein	gnl\|CDD\|236953	PRK11677, PRK11677, DUF1043 family protein.	1.40817e-86
NZ_CP017183.1\|WP_023323799.1\|4127204_4127909_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236632	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional.	4.93752e-123
NZ_CP017183.1\|WP_003860428.1\|4137519_4137990_+\|transcriptional-regulator-ArgR	gnl\|CDD\|179922	PRK05066, PRK05066, transcriptional regulator ArgR.	2.58591e-114
NZ_CP017183.1\|WP_003860429.1\|4136183_4137122_-\|malate-dehydrogenase	gnl\|CDD\|235340	PRK05086, PRK05086, malate dehydrogenase; Provisional.	0
NZ_CP017183.1\|WP_032627961.1\|4122505_4123177_-\|DUF1120-domain-containing-protein	gnl\|CDD\|185202	PRK15302, PRK15302, hypothetical protein; Provisional.	3.52937e-53
NZ_CP017183.1\|WP_048241925.1\|4129086_4129584_-\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|225517	COG2969, SspB, Stringent starvation protein B [General function prediction only].	1.67198e-81
NZ_CP017183.1\|WP_003860422.1\|4139009_4140464_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP017183.1\|WP_003860418.1\|4140550_4142518_-\|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB	gnl\|CDD\|182600	PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB; Provisional.	0
NZ_CP017183.1\|WP_048241746.1\|4124772_4127190_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|237937	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional.	0
NZ_CP017183.1\|WP_003860431.1\|4133604_4134972_+\|serine-endoprotease-DegQ	gnl\|CDD\|182262	PRK10139, PRK10139, serine endoprotease DegQ.	0

>NZ_CP017183.1|WP_003860434.1|4130943_4131372_-|50S-ribosomal-protein-L13
MKTFTAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI
>NZ_CP017183.1|WP_003860436.1|4130535_4130928_-|30S-ribosomal-protein-S9
MAENQYYGTGRRKSSAARVFIKPGSGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR
>NZ_CP017183.1|WP_003860438.1|4129589_4130228_-|stringent-starvation-protein-A
MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPSQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLYMQRIEKDWYSLMNVIVNGSSSEADAARKQLREELLAIAPVFGQKPFFLSDEFSLVDCYLAPLLWRLPTLGVEFSGPGAKELKGYMTRVFERDSFLASLTEPEREMRLGRG
>NZ_CP017183.1|WP_048241925.1|4129086_4129584_-|ClpXP-protease-specificity-enhancing-factor
MEMSQLSPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVLVPMEYARDGQIVLNIAPRAVGNLELANAEVRFNARFGGVPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEEVASLNDEEGGVGTESETVMSVIDGDKPDREDDNDPDDDPPPRGGRPALRVVK
>NZ_CP017183.1|WP_023323800.1|4128037_4128715_-|DUF1120-domain-containing-protein
MKKVLIATALSLCVASAFAADTAVLQVKGKLTNAACTPELSKGGVVDYGTIHLGSLSASAVNQLGQNNIDLTITCSAATKVSWTMVDDRAETNAGLTVNNAMFTGASLSNSSQTYGVGKTTGGVNIGSYAMFVKVDSVTADGATVDPIYTQNGDTSKWTTSTNGSSQAQNIREFTVAKSGEKVPLAFLSATFPLVTSLAIQDTTTLAITDDTTLDGQLTISLKYL
>NZ_CP017183.1|WP_023323799.1|4127204_4127909_-|fimbria/pilus-periplasmic-chaperone
MSCLKKTLLKSVIAAALFSAQFSTYAAGMVPETSLLVIDEATHSGTINVKNTDSFPALLYTNVLDLPDDQGLKLISTQPVVRLEPGQTQQLRFILQNKEPLEAEHYKRVTFEGIPPKSDNKNIKIGFNLRQDLPVLIRPAKLAVVTDAWKYLEWNATGTTLTVKNPSKYVVRLAQNVMTQPSGTAGTLPKTYILPGQSMTATLKKTVSGDNKVKFFPASRYGVEVPSFVSELNK
>NZ_CP017183.1|WP_048241746.1|4124772_4127190_-|fimbrial-biogenesis-outer-membrane-usher-protein
MTVCKKSRLALCVHAILCGTLPLVVLASPSLYAREVTFDTGIIQSRGLSPDLNHYFAQAPRFLPGTHSVQVKVNGKDRGTAAARFNEDGELCIDKDFLDFAGIMPVPLKAGEACHDIRSDYAQAVVNALPNQDAVELYLPQEAINSLTSNIKHFQQGGTAGLLNYSLFSTRNEYGDSDNSRYSQASLEAGFNTMDWSVRSRYILTDDDGDKNAESIYTYAEHVFVPQRLTMQVGEINAMSGVLSGVPITGVQLMPTNGLERDGTGVSVSGIARSSQARVEVRQSGRLVYSTLVPAGPFTLDDVPVVRNNVDLDVTVVESDGSSSHFIVPASAVRTRKLGRPQGLTMSVGQVRSIDSDYSDPLVVNVSDGWRITPWMNVLASGAVAEKYQAAGGSAEFMLSDIWGITTTAAASKEQFGDSNSGLKTELQSDLTLGEHVSLSASATHFSSGYRELADALDDEFQPNDNTYSGNVSFATGIAGTFSAGFNYNQSANYEDSRYLLLSWGKTFKYASITVNWQSAVGNTDDEQDDDMLYVNLSIPLGGSQSLSSYMRKQGDRTTYGVANSGAIGDNTNYYISADRDNDDNENSFNGNINTNLHYTQLSVGGGSSGSNQRNYSATLTGGIAMHKDGVTFSPYAIKDTFAIAKLNEPKSGVEISTPQGTIWTDHWGQAVVPGLNEWRNSRIEIDANKLPPSMTLANGIKYVAAGHASVSEVSFKILNSRRVMLRVKRADGTPLAKGLSIVDEKGNYIVTSVDDGHVFINDADQLKGLYAMDDNNNRLCQIHYTLSDKKDDEAFYEEVNGVCQ
>NZ_CP017183.1|WP_023323797.1|4124209_4124776_-|outer-membrane-protein
MKTQRVIKVATFLAFCLPGLTLAEDCQITLSQPIVDYKQLKRDDIVTSQQSWHKLPEREVTVNVFCPDKQKLAVLLQGNAGEKGRFRFGQNGGVAVKIDDMNVDGKSYTVGKTVDQLNFTPESGSPSPFYLRNNEAVVAVENNQAVTGQQMTFTATIFPVLNESAFSNNADQTTLESDLSWKILQNNP
>NZ_CP017183.1|WP_023323796.1|4123375_4124041_-|DUF1120-domain-containing-protein
MKKVLLATALSLCVASAFAADTAVLQVKGKLTNAACTPQLSNGGVVDYGTIHLGELSATAVNQLGDKDINLTITCGAPTQVGWVVNDDRESSKAGINVDFNGTMQNISYYQYGVGKTTGGVNIGNYMLFIKNKKVTIDGQEGDEIFSNVDWNGSKWESGGAVRSDGISIISAATTGTTTPVAFTTAVFPLVTSLAIQGTDTLAITDDTSLDGQATITLKYL
>NZ_CP017183.1|WP_032627961.1|4122505_4123177_-|DUF1120-domain-containing-protein
MKKVVLASMLVMFVSSAFAADTAVLKVTGVLTNSSCIPEISGGGVVDYGTIHLSALNTTAINQLGQKDFSLSITCPALTKAGFSVSDDRTGTAPNIMVKDGAGNGNDIIQPLNMFGLNKTAGNVNIGNYTIFVKNDTITADGATVGAIYSADNGTSWSDNGTLMVNDGSQIVSVATVGSTAPVAFKNLVIPMAVSAAIQDTNTLAITDDTNMDGQATFTIKYL
>NZ_CP017183.1|WP_003860433.1|4131721_4132846_-|cell-division-protein-ZapE
MQNLSPSSRYQLALSEGTHQPDDVQREAVNRLDTIYQEILAKPADAVQSSGLKAAFGRLLGKKEPTVNAPVRGLYMWGGVGRGKTWLMDMFYQSLPGTRKQRLHFHRFMLRVHEELTALQGETDPLEIVADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTLTQAHLWLSPLNADTASEMDKLWLALAGAPRDNAPALEINHRPLSTLGVENQTLAVSFGTLCVDARSQHDYIALSRLFHTVMLWDVPVMTPLMESEARRFIALVDEFYERHVKLVVSAEVPLYEIYQGERLKFEFQRCLSRLQEMQSEEYLKREHMP
>NZ_CP017183.1|WP_003860432.1|4133035_4133434_+|DUF1043-family-protein
MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQSLQYELEKNKAELEEYREELVSHFARSAELLDNMATDYRQLYQHMAKSSSSLLPEMTAETNPFRNRLADSEAGNDQAPVQMPRDYSDGASGLLRGGVKRD
>NZ_CP017183.1|WP_003860431.1|4133604_4134972_+|serine-endoprotease-DegQ
MKKKNQLLSALALSVGLSLSASFPVSAALPSQVPGQEAIPSLAPMLEKVLPAVVSVQVEGTARQSQRIPEELKKYFGEDAPDQQAQPFEGLGSGVIIDAAKGYILTNNHVISQADKISVQLNDGREFDAKLIGGDDQSDIALLQVQNPSNLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSIGIGFAIPSNMAKTLSQQLIQFGEVKRGLLGIKGMEMSADIAKAFKLNVQRGAFVSEVLPNSGSAKAGVKSGDVIVSLNDKPLSSFAELRSRIATTEPGAKVKLGLIREGKPLTVEVTLDKSTSSSASAEQISPALQGATLSDGQLKNGTKGISVTTVEKSSPAAQAGLHQDDVIVGVNRTRVQSIAEMRKVLESKPAVIALQIIRGNDTLYILLR
>NZ_CP017183.1|WP_003860430.1|4135064_4136132_+|outer-membrane-stress-sensor-serine-endopeptidase-DegS
MLLKLFRSIVIGLIVAGLLLVAMPSLRQFNKLSAPQFDSTDETPATYNQAVRRAAPAVVNVYNRGLNSSAHNQLEIRTLGSGVIMDDRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINRKRTPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPSGRQNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPMHTQGGGIDQIQGIVVNEVAPGGPAANAGIQVNDVILSVNGTPAVSALETMDQVAEIRPGSIIPVEVMRNDKKLTIQVTIQEYPATN
>NZ_CP017183.1|WP_003860429.1|4136183_4137122_-|malate-dehydrogenase
MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDARPALQGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAETCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPTEVEVPVIGGHSGVTILPLLSQIPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGEHARFFSQPLLLGKNGVEERKSIGTLSAFEQNAMEGMLDTLKKDITLGEEFVNK
>NZ_CP017183.1|WP_003860428.1|4137519_4137990_+|transcriptional-regulator-ArgR
MRSSSKQEELVKAFKALLKEEKFSSQGEIVQALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFSVKDLYEAILVLFEQEL
>NZ_CP017183.1|WP_003860426.1|4138368_4138632_+|peroxide/acid-stress-response-protein-YhcN
MKIKTTVATLSVLSVLSFGAFAADTINAEQAQSRQAIGTVSVGAIGTSPMDMHEMLNKKAEEQGASSYRIIEARSGDHWHATAELYK
>NZ_CP017183.1|WP_003860424.1|4138691_4138964_-|barstar-family-protein
MKIYTFDFDEIESQEDFYREFIRAFDLERGSVSNLDMLWDVVTGDRLPLPLEIEFTHLPEKLRRRFGALILLFDEAEEELEGQLRFNVRQ
>NZ_CP017183.1|WP_003860422.1|4139009_4140464_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MTTQALQDSILFQTGYLVNGIWKTLDTTFDVLNPATGEVIAKVAKAGKAETEEAIVAATKAFPAWRAKTAKERSAILYRWYELIIENKSWLGRLMTTEQGKPLKEAEGEVDYAASFIQWFAEQAKRANGEIIPPVKPGSRILATREPVGVVAAITPWNFPMAMLTRKLGPALAAGCTGVIKPANNTPLSAFALLTLAKQAGVPDGVLNAVAGSTSEISDAIMASHDVRKISFTGSTAVGKTLVRNSAETMKKVSMELGGNAPYIVFEDADIDAAVKGAIANKFRNAGQVCVSVNRFYIQETVYDKFVNQLADAVKALKVGNGLDEGVVVGPLIEPSAVEKVREHVEDAVAKGATVLAGGKPHELGGNFWMPTVLGDCHEGMKLAEEETFGPVAACFRFTSEDEVVMRANNTPYGLAAYFYTQNLSRVFRVSQAIESGMIGINECAVSTELGPFGGVKESGLGREGSVLGLEEFLEVKTLHIGGL
>NZ_CP017183.1|WP_003860418.1|4140550_4142518_-|p-hydroxybenzoic-acid-efflux-pump-subunit-AaeB
MGIFSIASQHIRFAVKLACAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPYSGAIRYRGMLRIIGTFIGCIAALTIIILMIRTPLLMLIVCCIWAGFCTWVSSLVKVENSYAWGLAGYTALIIIITIQSEPLLAPQFAVERCSEIVIGIVCAIVADLLFSPRSIKQEVDRELDALIVAQYQLMQLCIKHGDSEEVDKAWSALVRRTQALEGMRSNLNMESSRWERANRRLKAINTVSLTLITQACETYLIQNTRPEVVTDTFRELFDEPVETVQDVHRQLKRMRRVIAWTGERDTPVTIYTWVGAATRYLLLKRGVISNTKISAAEEEVLQGEVVIKPESAERHHAMVNFWRTTLACILGTLFWLWTGWTSGSGAMVMIAVVTALAMRLPNPRMVAIDFLYGTIAALPIGALYFLVIIPSTQQSMLLLCISLAVMAFFIGIEVQKRRLGSLGALASTINIIVLDNPMTFHFSQFLDSALGQLVGCFLAMMVILLVRDNSQARTGRVLLNQFVSAAVSSLTTNTARRKENHLPALYQQLFLLLNKFPGDVARFRLALTMIIAHQRLRNAPVPINDDLSAFHRQLRRTADHVISASSDDKRRRYFKQLLEELDIYQEKLRIWEAPPQVTEPVERLVFMLHRYQNALTDS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017183_1	1.1\|1989841\|38\|NZ_CP017183\|CRISPRCasFinder	1989841-1989878	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	452685-452715	6	0.806
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	748383-748413	6	0.806
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	807991-808021	7	0.774
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	54037-54067	7	0.774
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	50924-50954	7	0.774
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	54031-54061	7	0.774
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	54892-54922	7	0.774
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	37877-37907	7	0.774
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	MN586014	Gordonia phage Keelan, complete genome	12186-12216	7	0.774
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	130354-130384	8	0.742
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	681516-681546	8	0.742
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NC_047866	Aeromonas phage Ahp1, complete genome	6011-6041	9	0.71
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NC_018280	Celeribacter phage P12053L, complete genome	35764-35794	9	0.71
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP024374	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp41, complete sequence	6130-6160	10	0.677
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP024376	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp26, complete sequence	6166-6196	10	0.677
NZ_CP017183_2	2.1\|3267540\|31\|NZ_CP017183\|CRISPRCasFinder	3267540-3267570	31	NZ_CP024377	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp23, complete sequence	24778-24808	10	0.677

1. spacer 1.1|1989841|38|NZ_CP017183|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cagacgcaagatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
********..****************************

2. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.806

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
tggcggatgcgctggctgcggctgctgtcgg	Protospacer
**** *****.****************   .

3. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.806

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
tggcggatgcgctggctgcggctgctgtcgg	Protospacer
**** *****.****************   .

4. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
cggcggatgcgctggctgcggctgctgtcgg	Protospacer
.*** *****.****************   .

5. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
tggctgatgcgctggctgcgggtgagcagcg	Protospacer
**********.********** **   *.*.

6. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.774

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
tggctgatgcgctggctgcgggtgagcagcg	Protospacer
**********.********** **   *.*.

7. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
tggctgatgcgctggctgcgggtgagcagcg	Protospacer
**********.********** **   *.*.

8. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
tggctgatgcgctggctgcgggtgagcagcg	Protospacer
**********.********** **   *.*.

9. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
tggctgatgcgctggctgcgggtgagcagcg	Protospacer
**********.********** **   *.*.

10. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to MN586014 (Gordonia phage Keelan, complete genome) position: , mismatch: 7, identity: 0.774

tggctgatgcactggctgcggctgctgaaca---	CRISPR spacer
cggctgatgctctcgctgcg---gctgaacgcga	Protospacer
.********* ** ******   *******.

11. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 8, identity: 0.742

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
gcgctgatgcacgggccgcggctgctgctgc	Protospacer
  ********** ***.**********

12. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 8, identity: 0.742

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
cggctgatggaccggctgcggctgtccccca	Protospacer
.******** **.***********..   **

13. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NC_047866 (Aeromonas phage Ahp1, complete genome) position: , mismatch: 9, identity: 0.71

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
acgctgctgcactggctgccgctgctctcag	Protospacer
  **** ************ ******    .

14. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NC_018280 (Celeribacter phage P12053L, complete genome) position: , mismatch: 9, identity: 0.71

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
aacttgatgcacgggctgcggatgctgtccg	Protospacer
 . .******** ******** *****  *.

15. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP024374 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp41, complete sequence) position: , mismatch: 10, identity: 0.677

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
ctattgatgcactggctgctgctgcttgttg	Protospacer
. ..*************** ****** . ..

16. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP024376 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp26, complete sequence) position: , mismatch: 10, identity: 0.677

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
ctattgatgcactggctgctgctgcttgttg	Protospacer
. ..*************** ****** . ..

17. spacer 2.1|3267540|31|NZ_CP017183|CRISPRCasFinder matches to NZ_CP024377 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp23, complete sequence) position: , mismatch: 10, identity: 0.677

tggctgatgcactggctgcggctgctgaaca	CRISPR spacer
ctattgatgcactggctgctgctgcttgttg	Protospacer
. ..*************** ****** . ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1155406 : 1164922

Shigella_phage(36.36%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048241254.1\|1155406_1155667_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	2.5e-06	48.1
WP_048241253.1\|1155755_1156025_-	hypothetical protein	NA	NA	NA	NA
WP_069597460.1\|1156115_1156334_-	TraR/DksA family transcriptional regulator	V5USD3	Shigella_phage	7.8e-17	64.8
WP_045340876.1\|1156336_1156687_-	hypothetical protein	C6ZR42	Salmonella_phage	1.7e-05	35.3
WP_069597461.1\|1156778_1157126_-	hypothetical protein	NA	NA	NA	NA
WP_023300422.1\|1157122_1157341_-	hypothetical protein	NA	NA	NA	NA
WP_048241248.1\|1157337_1157997_-	DNA methyltransferase	G8C7S6	Escherichia_phage	3.8e-123	93.6
WP_048241246.1\|1157993_1158146_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.3e-05	44.2
WP_048241244.1\|1158142_1158571_-	hypothetical protein	M9NYX4	Enterobacteria_phage	2.9e-71	94.4
WP_069597462.1\|1159257_1159563_+	hypothetical protein	F1C5A7	Cronobacter_phage	9.5e-37	93.7
WP_053071058.1\|1159620_1161723_+	hypothetical protein	C8XUT1	Shigella_phage	1.3e-246	66.3
WP_048241220.1\|1161755_1163231_-	glucosyltransferase domain-containing protein	NA	NA	NA	NA
WP_006809736.1\|1163227_1164145_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	1.6e-159	91.7
WP_006809735.1\|1164141_1164504_-	GtrA family protein	U5P0S6	Shigella_phage	2.6e-49	83.3
WP_048241219.1\|1164616_1164922_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.7e-14	42.6

DBSCAN-SWA_2

1789126 : 1859038

Enterobacteria_phage(18.46%)

portal,head,integrase,tRNA,protease,holin,capsid,terminase,tail

attL 1790109:1790125|attR 1822539:1822555

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069597599.1\|1789126_1789522_-	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.2e-39	64.9
WP_081329664.1\|1789644_1789875_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.4e-19	59.2
WP_069597477.1\|1789877_1790432_+	hypothetical protein	NA	NA	NA	NA
1790109:1790125	attL	NA	NA	NA	NA
WP_069597478.1\|1790486_1791287_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.0e-58	46.9
WP_058686314.1\|1791809_1792829_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.2e-98	52.8
WP_069597479.1\|1792838_1793177_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.0e-39	69.4
WP_069597480.1\|1793253_1793994_-	hypothetical protein	NA	NA	NA	NA
WP_069597481.1\|1793996_1795214_-	ATP-binding protein	NA	NA	NA	NA
WP_069597482.1\|1795596_1795803_+\|holin	class II holin family protein	H9C183	Pectobacterium_phage	1.8e-23	75.0
WP_069597483.1\|1795802_1796339_+	lysozyme	K7PM52	Enterobacteria_phage	2.6e-82	80.6
WP_069597484.1\|1796335_1796851_+	hypothetical protein	K7PHH7	Enterobacteria_phage	4.6e-84	94.7
WP_169823035.1\|1796950_1797505_+	hypothetical protein	A0A192Y5Y1	Salmonella_phage	3.0e-65	64.7
WP_040017196.1\|1797646_1798045_+\|tail	tail protein	E4WL29	Enterobacteria_phage	3.5e-71	100.0
WP_069597601.1\|1798775_1799333_+	recombinase family protein	A0A1S6L009	Salmonella_phage	1.1e-75	78.7
WP_069597485.1\|1799535_1801533_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.3e-21	25.7
WP_058677627.1\|1801596_1802895_+	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_059452931.1\|1803039_1803231_+	hypothetical protein	Q77Z09	Phage_21	1.6e-21	92.6
WP_022650806.1\|1803306_1803552_+	YmjA family protein	NA	NA	NA	NA
WP_022650807.1\|1803556_1805056_-	EAL domain-containing protein	NA	NA	NA	NA
WP_071524166.1\|1805180_1805273_-	stress response membrane protein YncL	NA	NA	NA	NA
WP_003857896.1\|1805646_1805895_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_015570794.1\|1805948_1806023_-	protein YoaJ	NA	NA	NA	NA
WP_015570793.1\|1806023_1806122_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_032609012.1\|1806167_1807196_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	2.2e-13	32.1
WP_022650809.1\|1807508_1807763_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_022650810.1\|1807843_1808149_+	hypothetical protein	NA	NA	NA	NA
WP_003857886.1\|1808149_1808494_-	DUF488 domain-containing protein	NA	NA	NA	NA
WP_048240968.1\|1808644_1809352_+	CTP synthase	NA	NA	NA	NA
WP_048240966.1\|1809383_1810571_-	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_022650813.1\|1810670_1811462_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003857881.1\|1811445_1811892_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_048240964.1\|1811998_1814035_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_022650815.1\|1814050_1815382_-	hypothetical protein	NA	NA	NA	NA
WP_022650816.1\|1815791_1816292_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_006809195.1\|1816511_1817654_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21929	Phage_21	1.4e-93	49.0
WP_071887073.1\|1817628_1817892_-	hypothetical protein	NA	NA	NA	NA
WP_069597487.1\|1818413_1818695_-	hypothetical protein	A0A077KAZ4	Edwardsiella_phage	2.1e-30	78.2
WP_088196742.1\|1818697_1819006_-	hypothetical protein	G8C7V0	Escherichia_phage	6.1e-07	68.9
WP_047050266.1\|1819002_1819206_-	hypothetical protein	R9TRD3	Aeromonas_phage	1.5e-22	78.1
WP_069597488.1\|1819762_1820590_-	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	2.8e-123	85.9
WP_057060372.1\|1820589_1821003_-	hypothetical protein	K7PJS4	Enterobacterial_phage	1.2e-53	83.9
WP_040117514.1\|1821713_1822433_-	LexA family transcriptional regulator	A0A2R2X2B0	Escherichia_phage	2.6e-77	62.1
WP_023305900.1\|1822531_1822750_+	hypothetical protein	A0A2K8HL98	Pseudomonas_phage	4.9e-11	60.3
1822539:1822555	attR	NA	NA	NA	NA
WP_032634711.1\|1822791_1823262_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.4e-74	92.9
WP_081329665.1\|1823502_1823709_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.5e-14	69.2
WP_069597489.1\|1823671_1824598_+	conserved phage C-terminal domain-containing protein	K7PLZ7	Enterobacterial_phage	2.4e-67	54.5
WP_069597490.1\|1824594_1825089_+	hypothetical protein	NA	NA	NA	NA
WP_069597491.1\|1825088_1825748_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	1.5e-98	79.3
WP_022650831.1\|1825744_1825972_+	hypothetical protein	NA	NA	NA	NA
WP_069597492.1\|1825968_1826289_+	LexA family transcriptional regulator	K7PHB4	Enterobacterial_phage	7.1e-43	77.4
WP_069597493.1\|1826285_1826675_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	6.4e-62	88.1
WP_069597602.1\|1826699_1827416_+	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	8.2e-55	52.7
WP_069597494.1\|1827412_1828402_+	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	4.2e-166	85.4
WP_069597495.1\|1828416_1828782_+	DUF1133 family protein	K7PGW2	Enterobacterial_phage	1.1e-55	90.8
WP_069597496.1\|1828819_1829332_-	hypothetical protein	NA	NA	NA	NA
WP_069597497.1\|1829353_1830421_-	hypothetical protein	U5P4L0	Shigella_phage	6.4e-128	67.5
WP_069597498.1\|1831070_1831262_+	hypothetical protein	NA	NA	NA	NA
WP_069597499.1\|1832023_1832410_+	hypothetical protein	A0A192Y8P2	Salmonella_phage	2.1e-44	78.1
WP_022651286.1\|1832396_1832678_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-19	46.2
WP_069597500.1\|1832677_1833307_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	3.0e-101	86.6
WP_058686916.1\|1833314_1833584_+	hypothetical protein	G8C7W1	Escherichia_phage	3.9e-26	73.0
WP_042889598.1\|1833540_1833723_+	hypothetical protein	K7PM01	Enterobacterial_phage	2.5e-16	88.6
WP_032671572.1\|1833789_1834026_+	hypothetical protein	NA	NA	NA	NA
WP_023305914.1\|1834094_1834289_+	hypothetical protein	NA	NA	NA	NA
WP_023305915.1\|1834354_1834582_+	hypothetical protein	A0A1L6Z528	Klebsiella_phage	1.5e-18	75.0
WP_069597501.1\|1835137_1835863_+	hypothetical protein	S4TNN5	Salmonella_phage	1.3e-68	55.9
WP_069597502.1\|1835867_1836158_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	6.7e-48	87.5
WP_069597503.1\|1836170_1836380_+	serine acetyltransferase	A0A286N2R4	Klebsiella_phage	5.2e-18	68.1
WP_006811063.1\|1836501_1836936_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	4.9e-71	94.4
WP_006811062.1\|1836945_1838478_+\|terminase	terminase	A0A286S1M9	Klebsiella_phage	7.9e-289	96.9
WP_063436811.1\|1838480_1839758_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	4.9e-236	95.8
WP_080469656.1\|1839763_1840444_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	1.3e-118	94.2
WP_063436813.1\|1840455_1841619_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	1.8e-200	93.3
WP_063921719.1\|1841655_1841961_+	hypothetical protein	NA	NA	NA	NA
WP_165771111.1\|1841908_1842235_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	1.4e-41	74.1
WP_069597504.1\|1842295_1842475_+	hypothetical protein	NA	NA	NA	NA
WP_063436817.1\|1842477_1842810_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	3.3e-43	75.5
WP_063436818.1\|1842802_1843288_+	HK97 gp10 family phage protein	A0A0U3TGT7	Pseudomonas_phage	2.9e-56	68.1
WP_063436819.1\|1843284_1843650_+	DUF3168 domain-containing protein	K7PHI9	Enterobacteria_phage	3.7e-51	81.0
WP_063436820.1\|1843704_1844205_+\|tail	phage tail protein	Q9MCU9	Escherichia_phage	2.8e-86	97.0
WP_069597505.1\|1844243_1844729_+\|tail	phage tail assembly chaperone family protein, TAC	K7PJU9	Enterobacteria_phage	3.0e-61	98.3
WP_069597506.1\|1844924_1847384_+\|tail	phage tail tape measure protein	K7P6S7	Enterobacteria_phage	6.3e-296	68.3
WP_063436823.1\|1847383_1847722_+\|tail	phage tail protein	K7PHJ6	Enterobacteria_phage	3.9e-55	84.8
WP_063436824.1\|1847718_1848474_+\|tail	phage minor tail protein L	K7PKU0	Enterobacteria_phage	1.1e-137	94.4
WP_063921722.1\|1848475_1849186_+	C40 family peptidase	K7PGV2	Enterobacterial_phage	5.5e-144	97.0
WP_074167165.1\|1849215_1849557_+	hypothetical protein	K7PLP0	Enterobacteria_phage	3.1e-52	88.5
WP_045895700.1\|1849600_1850206_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	7.1e-100	96.0
WP_069597507.1\|1850258_1854092_+	DUF1983 domain-containing protein	K7P796	Enterobacteria_phage	0.0e+00	82.1
WP_069597508.1\|1854135_1854450_+	hypothetical protein	A0A2P0WA17	Enterobacter_phage	1.1e-32	64.7
WP_032619848.1\|1854450_1855122_+	hypothetical protein	A0A2P0WA07	Enterobacter_phage	9.9e-87	72.6
WP_017382566.1\|1855228_1855462_+	hypothetical protein	E4WL42	Enterobacteria_phage	3.9e-30	78.9
WP_057059057.1\|1855520_1856855_+	hypothetical protein	A0A220NRP2	Escherichia_phage	2.0e-126	58.0
WP_154232874.1\|1856949_1857189_-	hypothetical protein	NA	NA	NA	NA
WP_063945191.1\|1857176_1857497_+	hypothetical protein	K7PGV5	Enterobacterial_phage	4.7e-26	54.7
WP_023299884.1\|1857754_1859038_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.1e-09	28.3

DBSCAN-SWA_3

2033679 : 2052446

Enterobacteria_phage(38.1%)

terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069597513.1\|2033679_2034960_-	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	1.3e-122	50.5
WP_080471841.1\|2034992_2035172_-	excisionase family protein	NA	NA	NA	NA
WP_069597514.1\|2035165_2035984_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	6.0e-102	69.6
WP_058686191.1\|2035980_2036325_+	helix-turn-helix transcriptional regulator	G8C7U7	Escherichia_phage	3.9e-55	94.7
WP_017693170.1\|2036321_2036618_+	DUF4406 domain-containing protein	A0A222YYT7	Escherichia_phage	7.1e-29	63.0
WP_081329667.1\|2036614_2037025_+	ead/Ea22-like family protein	A0A125RPT9	Escherichia_phage	8.6e-33	82.8
WP_069597515.1\|2037027_2037309_+	hypothetical protein	A0A077KAZ4	Edwardsiella_phage	2.4e-26	71.3
WP_069597516.1\|2037312_2038254_+	DUF551 domain-containing protein	M9NZE4	Enterobacteria_phage	1.1e-43	53.2
WP_048981893.1\|2038234_2038672_-	hypothetical protein	A0A222YWI5	Escherichia_phage	2.1e-13	39.0
WP_069597517.1\|2039033_2039489_+	hypothetical protein	K7P7B8	Enterobacteria_phage	1.7e-61	72.8
WP_045340912.1\|2039488_2039659_+	NinE family protein	K7P7K0	Enterobacteria_phage	2.0e-20	91.1
WP_045340914.1\|2039651_2040293_+	recombination protein NinG	M9NYX8	Enterobacteria_phage	1.7e-104	93.0
WP_045324601.1\|2040289_2040430_+	YlcG family protein	K7PHH3	Enterobacteria_phage	2.0e-05	71.0
WP_069597518.1\|2040426_2041116_+	antiterminator	I6PDF8	Cronobacter_phage	7.9e-55	49.4
WP_001514183.1\|2041978_2042380_+	hypothetical protein	NA	NA	NA	NA
WP_001514184.1\|2042376_2042652_+\|holin	phage holin family protein	S4TNV9	Salmonella_phage	5.8e-09	41.0
WP_045892348.1\|2042655_2043096_+	lysozyme	A0A0M4R365	Salmonella_phage	2.6e-51	71.1
WP_045892349.1\|2043092_2043479_+	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	1.9e-10	36.5
WP_045332076.1\|2043775_2044309_+	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	6.7e-94	99.4
WP_045892351.1\|2044358_2044913_+	hypothetical protein	NA	NA	NA	NA
WP_032617987.1\|2045004_2045445_-	hypothetical protein	NA	NA	NA	NA
WP_023296432.1\|2045467_2046040_+\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	2.9e-71	72.6
WP_060614618.1\|2046026_2047505_+	DNA-packaging protein	G0ZND4	Cronobacter_phage	1.7e-256	87.2
WP_081329668.1\|2048372_2050472_+	hypothetical protein	C8XUT1	Shigella_phage	1.5e-242	64.7
WP_081329669.1\|2050499_2052446_-	acyltransferase	A0A193GZ69	Enterobacter_phage	2.6e-63	29.9

DBSCAN-SWA_4

2116261 : 2123510

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023314064.1\|2116261_2116939_+	type A chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	4.2e-77	63.1
WP_032634159.1\|2117114_2117426_-	YebG family protein	NA	NA	NA	NA
WP_045894585.1\|2117535_2118150_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.1e-28	35.2
WP_048240881.1\|2118194_2119049_-	dimethyl sulfoxide reductase anchor subunit family protein	A0A077SK59	Escherichia_phage	4.4e-23	34.6
WP_017384545.1\|2119050_2119668_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.0e-74	59.1
WP_069597523.1\|2119678_2122117_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	8.9e-218	49.8
WP_003857424.1\|2122247_2122553_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_057059212.1\|2122655_2123510_-	benzoate transporter	M1I711	Paramecium_bursaria_Chlorella_virus	6.2e-25	33.2

DBSCAN-SWA_5

2447844 : 2456582

Enterobacteria_phage(28.57%)

tail,integrase

attL 2442355:2442369|attR 2460765:2460779

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2442355:2442369	attL	NA	NA	NA	NA
WP_017382260.1\|2447844_2448972_+	porin OmpS2	Q1MVN1	Enterobacteria_phage	3.9e-120	60.6
WP_022651250.1\|2449006_2449429_-	GFA family protein	NA	NA	NA	NA
WP_003856931.1\|2449432_2449630_-	hypothetical protein	NA	NA	NA	NA
WP_071957459.1\|2450050_2450251_+\|integrase	tyrosine-type recombinase/integrase	A0A0U2JGI6	Escherichia_phage	1.4e-20	71.7
WP_048240711.1\|2450575_2451247_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	5.5e-77	59.1
WP_032666022.1\|2451313_2451721_-	cell envelope integrity/translocation protein TolA	NA	NA	NA	NA
WP_048240709.1\|2451863_2453132_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.0e-230	92.4
WP_039270990.1\|2453133_2453553_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	56.7
WP_048241840.1\|2453725_2454283_-	recombinase family protein	A0A1S6L009	Salmonella_phage	2.0e-77	79.2
WP_069597538.1\|2456012_2456582_-\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	1.4e-41	53.6
2460765:2460779	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2459914 : 2465252

Salmonella_phage(33.33%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032682332.1\|2459914_2460190_-	hypothetical protein	G8C7W1	Escherichia_phage	1.4e-31	83.3
WP_023324732.1\|2460197_2460827_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	1.2e-102	88.0
WP_023324733.1\|2460826_2461108_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.7e-19	46.2
WP_023324734.1\|2461094_2461481_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	7.1e-45	77.3
WP_048240707.1\|2462653_2463469_-	antitermination protein	K7P7B9	Enterobacteria_phage	2.3e-125	82.3
WP_048241839.1\|2463465_2463828_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	2.0e-49	82.2
WP_071957454.1\|2463830_2464031_-	hypothetical protein	H6WRY8	Salmonella_phage	1.8e-28	81.8
WP_057059623.1\|2464035_2464638_-	DUF1367 family protein	H6WRY7	Salmonella_phage	1.2e-94	83.0
WP_023296481.1\|2465027_2465252_-	DinI family protein	K7PM44	Enterobacteria_phage	5.2e-24	67.5

DBSCAN-SWA_7

2469327 : 2481857

Enterobacteria_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048240697.1\|2469327_2470014_-	phage replication protein P	G8C7U6	Escherichia_phage	1.8e-83	63.4
WP_048240695.1\|2470010_2470928_-	replication protein	K7PGZ0	Enterobacteria_phage	7.2e-112	71.4
WP_045903090.1\|2471012_2471564_-	regulatory protein	K7PJT7	Enterobacteria_phage	2.9e-31	45.4
WP_022651300.1\|2471568_2471796_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	1.6e-20	62.2
WP_022651301.1\|2471895_2472288_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	6.3e-41	63.1
WP_048240690.1\|2472801_2472966_+	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-17	85.4
WP_088196727.1\|2474361_2474967_+	recombinase RecT	K7PKR8	Enterobacteria_phage	1.2e-78	76.0
WP_048240684.1\|2475005_2475248_+	DUF4060 family protein	K7PHF4	Enterobacteria_phage	5.1e-33	92.3
WP_014884030.1\|2475312_2475525_+	excisionase family protein	A0A0U2RY08	Escherichia_phage	4.3e-20	64.8
WP_001186974.1\|2476815_2477751_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.2e-140	94.9
WP_032609310.1\|2477794_2479168_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.6e-51	31.9
WP_015570430.1\|2479225_2479378_-	hypothetical protein	NA	NA	NA	NA
WP_032609311.1\|2479652_2480636_-	zinc transporter ZntB	NA	NA	NA	NA
WP_022651306.1\|2480726_2481857_-	methyl-accepting chemotaxis sensory transducer	A0A2H4J162	uncultured_Caudovirales_phage	2.6e-10	28.6

DBSCAN-SWA_8

2948550 : 2957406

Tupanvirus(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048240499.1\|2948550_2949162_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	A0A2H4UVM0	Bodo_saltans_virus	1.2e-14	29.3
WP_045897100.1\|2949200_2950181_-	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_048240498.1\|2950374_2951379_+	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	6.6e-34	29.3
WP_003859477.1\|2951428_2952595_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	4.1e-112	54.0
WP_048240497.1\|2952834_2953716_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.5e-103	62.4
WP_048240496.1\|2953716_2954802_-	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	6.3e-99	52.2
WP_006811221.1\|2954891_2956298_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	5.2e-37	28.3
WP_048240495.1\|2956392_2957406_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.6e-91	49.5

DBSCAN-SWA_9

3421676 : 3439428

Salmonella_phage(33.33%)

terminase,integrase,holin

attL 3430067:3430082|attR 3438632:3438647

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069597607.1\|3421676_3422147_-	hypothetical protein	K7P6T0	Enterobacteria_phage	1.3e-61	77.7
WP_069597569.1\|3422276_3422591_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.3e-32	63.7
WP_047721184.1\|3423110_3424091_-\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	7.6e-35	41.5
WP_063155751.1\|3424310_3424541_-	hypothetical protein	NA	NA	NA	NA
WP_023314673.1\|3425636_3425906_-	hypothetical protein	G8C7W1	Escherichia_phage	9.0e-31	84.3
WP_023304238.1\|3425913_3426543_-	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	6.0e-102	87.6
WP_022651286.1\|3426542_3426824_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-19	46.2
WP_063155753.1\|3426810_3427197_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	2.7e-44	77.3
WP_006811579.1\|3427375_3428347_-	hypothetical protein	A9YX09	Burkholderia_phage	6.5e-71	48.0
WP_006811580.1\|3428853_3429225_+	hypothetical protein	NA	NA	NA	NA
WP_006811581.1\|3429368_3430181_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	6.8e-106	70.7
3430067:3430082	attL	NA	NA	NA	NA
WP_006811582.1\|3430177_3430315_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	9.8e-10	73.8
WP_006811583.1\|3430311_3430668_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.0e-61	94.9
WP_017692886.1\|3430664_3430946_-	hypothetical protein	K7P7Q1	Enterobacteria_phage	1.6e-46	98.9
WP_017692885.1\|3430948_3431149_-	hypothetical protein	K7PJT9	Enterobacteria_phage	7.6e-19	59.1
WP_069597571.1\|3431154_3431754_-	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	3.8e-98	86.8
WP_045332197.1\|3432158_3432392_-	DinI family protein	A0A0M4REN2	Salmonella_phage	4.0e-27	80.5
WP_045896685.1\|3432709_3433819_+	recombinase RecT	H6WRX0	Salmonella_phage	4.2e-167	79.9
WP_045896682.1\|3433862_3434546_+	hypothetical protein	H2BDG4	Pseudomonas_virus	8.7e-46	46.2
WP_045896629.1\|3434532_3434775_+	DUF4060 family protein	K7PHF4	Enterobacteria_phage	1.3e-33	93.6
WP_022651668.1\|3434821_3435106_+	excisionase Xis	H6WRW8	Salmonella_phage	4.3e-39	83.0
WP_006811608.1\|3435083_3436313_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	9.9e-242	98.8
WP_069597573.1\|3436744_3437221_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_003860717.1\|3437217_3438171_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_003860719.1\|3438170_3438821_-	anti-sigma-E factor RseA	NA	NA	NA	NA
3438632:3438647	attR	NA	NA	NA	NA
WP_006176728.1\|3438852_3439428_-	RNA polymerase sigma factor RpoE	A0A0F6TH34	Sinorhizobium_phage	8.2e-05	28.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017183

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection