CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017057	Erythrobacter litoralis strain DSM 8509 chromosome, complete genome	1 crisprs	csa3,DinG,DEDDh	1	4	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017057_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017057_1

2175489-2175703

Orphan

Consensus_repeat	Method
CGATCGCCGCGCGGATCGCAGGG	CRISPRCasFinder

4 spacers

DinG

The CRISPR arrays of NZ_CP017057_1

>merge|NZ_CP017057|1|2175489-2175703|CRISPRCasFinder
CGAACAGCGCGCAGAGCGCAGCGCTCGGCAGGCCGAACGCCGGCTCGAGCGGCGCGCGGAACGCCTCGAAAGCCGCGCGGATCGCCGCGCGGACCGCGTTGACCGGCGTGGTGAACGCAGGGCCGACCGGTTCGATCGCCGCGCGGATCGCAGGGAAGATCGCCGTGCGGATCGCAGGGCCGATCGCAGGGAAGATCGCCGCGCGGATCGCAGGG

>NZ_CP017057|1|1|2175489-2175703|CRISPRCasFinder
CGAACAGCGCGCAGAGCGCAGCG	CTCGGCAGGCCGAACGCCGGCT
CGAGCGGCGCGCGGAACGCCTCG	AAAGCCGCGCGGATCGCCGCGCGGACCGCGT
TGACCGGCGTGGTGAACGCAGGG	CCGACCGGTTCGATCGCCGCGC
GGATCGCAGGGAAGATCGCCGTG	CGGATCGCAGGGCCGATCGCAGGGA
AGATCGCCGCGCGGATCGCAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017057.1\|WP_034900692.1\|2185408_2185810_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017057.1\|WP_034900712.1\|2167722_2168265_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP017057.1\|WP_034900700.1\|2176379_2177048_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|214780
NZ_CP017057.1\|WP_034900698.1\|2182327_2182867_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_CP017057.1\|WP_069297607.1\|2177081_2178695_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234829
NZ_CP017057.1\|WP_150132454.1\|2171725_2171971_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017057.1\|WP_034900699.1\|2181606_2182239_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017057.1\|WP_034900691.1\|2185849_2186605_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP017057.1\|WP_034900696.1\|2183620_2184250_-\|SOS-response-associated-peptidase-family-protein	unknown	unknown	gnl\|CDD\|225046
NZ_CP017057.1\|WP_034901688.1\|2178850_2181610_+\|helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP017057.1\|WP_034900708.1\|2172154_2172418_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|224174
NZ_CP017057.1\|WP_034900702.1\|2174352_2174937_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|274927
NZ_CP017057.1\|WP_034900707.1\|2172500_2172911_+\|BLUF-domain-containing-protein	unknown	unknown	gnl\|CDD\|377423
NZ_CP017057.1\|WP_034900694.1\|2184249_2185164_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|183808
NZ_CP017057.1\|WP_034900706.1\|2173014_2173530_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017057.1\|WP_051697490.1\|2182863_2183601_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_CP017057.1\|WP_034900714.1\|2166521_2167703_+\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|226587
NZ_CP017057.1\|WP_034900710.1\|2169861_2171535_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP017057.1\|WP_034900704.1\|2173635_2174343_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|225109
NZ_CP017057.1\|WP_081845503.1\|2168314_2169742_-\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349879

Protein	Function_ID	Function_description	E-value
NZ_CP017057.1\|WP_034900712.1\|2167722_2168265_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	9.14499e-31
NZ_CP017057.1\|WP_034900700.1\|2176379_2177048_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|214780	smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.	7.00216e-22
NZ_CP017057.1\|WP_034900698.1\|2182327_2182867_+\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	2.39363e-28
NZ_CP017057.1\|WP_069297607.1\|2177081_2178695_-\|lysine--tRNA-ligase	gnl\|CDD\|234829	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP017057.1\|WP_034900708.1\|2172154_2172418_+\|acylphosphatase	gnl\|CDD\|224174	COG1254, AcyP, Acylphosphatases [Energy production and conversion].	2.67431e-26
NZ_CP017057.1\|WP_034900691.1\|2185849_2186605_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	3.67011e-75
NZ_CP017057.1\|WP_034900696.1\|2183620_2184250_-\|SOS-response-associated-peptidase-family-protein	gnl\|CDD\|225046	COG2135, COG2135, Uncharacterized conserved protein [Function unknown].	7.47151e-24
NZ_CP017057.1\|WP_034901688.1\|2178850_2181610_+\|helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	1.38293e-72
NZ_CP017057.1\|WP_034900702.1\|2174352_2174937_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|274927	TIGR04026, hypothetical_protein, PPOX class probable FMN-dependent enzyme, alr4036 family. Members of the PPOX family (see pfam01243) may contain either FMN or F420 as cofactor. This subfamily described here is widespread in Cyanobacteria and plants, and is named for alr4036 from Nostoc sp. PCC 7120. The family consists mostly of proteins from species that lack the capability to synthesize F420, so it is probable that all members bind FMN rather than F420. [Unknown function, Enzymes of unknown specificity].	2.41965e-11
NZ_CP017057.1\|WP_034900707.1\|2172500_2172911_+\|BLUF-domain-containing-protein	gnl\|CDD\|377423	pfam04940, BLUF, Sensors of blue-light using FAD. The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.	3.35389e-36
NZ_CP017057.1\|WP_034900694.1\|2184249_2185164_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|183808	PRK12878, ubiA, 4-hydroxybenzoate octaprenyltransferase.	1.09469e-134
NZ_CP017057.1\|WP_051697490.1\|2182863_2183601_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.57713e-16
NZ_CP017057.1\|WP_034900714.1\|2166521_2167703_+\|DUF1501-domain-containing-protein	gnl\|CDD\|226587	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown].	2.67087e-73
NZ_CP017057.1\|WP_034900710.1\|2169861_2171535_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP017057.1\|WP_034900704.1\|2173635_2174343_+\|diguanylate-cyclase	gnl\|CDD\|225109	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms].	6.43493e-15
NZ_CP017057.1\|WP_081845503.1\|2168314_2169742_-\|M28-family-peptidase	gnl\|CDD\|349879	cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase. Peptidase M28 family; Plasma glutamate carboxypeptidase (PGCP; blood plasma glutamate carboxypeptidase; EC 3.4.17.21) subfamily. PGCP is a 56kDa glutamate carboxypeptidase that is mainly produced in mammalian placenta and kidney, the majority of which is thought to be secreted into the bloodstream. Similar proteins are also found in other species, including bacteria. These proteins contain protease-associated (PA) domain inserts between the first and second strands of the central beta sheet in the protease-like domain. The PA domains may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. The exact physiological substrates of PGCP are unknown, although this enzyme may play an important role in the hydrolysis of circulating peptides. Its closest homolog encodes an important brain glutamate carboxypeptidase II (NAALADase) identical to the prostate-specific membrane antigen (PSMA), which serves as a marker for prostatic cancer metastasis. Hypermethylation of PGCP gene has been associated with human bronchial epithelial (HBE) cell immortalization and lung cancer. PGCP also provides an attractive target for serological analysis in hepatitis C virus (HCV)-induced hepatocellular carcinoma (HCC) patients.	1.83523e-107

>NZ_CP017057.1|WP_034900702.1|2174352_2174937_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MFDQLDDVLQDLTNRLVRAARDRKSPMHTPAVVSGDVDARIMVLRAFDSTAFTLRFHTDTRAPKTDAFAADPRAAVLFYDKGSKIQIRARGKASVHTDASIADEAWAKGTNFARRCYLGDGPGTPSEAPTSGLPSAFEGVEPTDDQLVAGRPNFAVLMVELASLDWLYLAHTGHVRAGFERDGRGEWRGRWLSP
>NZ_CP017057.1|WP_034900704.1|2173635_2174343_+|diguanylate-cyclase
MAGGHFGGDAVALALDPATGLIAAMALAMVVTAFALTRRPPTKASVTRARAGQGALEGLFGTDRFERELRRAARRPQRPYSGESVVMARIDHLHCVERIRGEDMRREAAARVARIMRAGLRRTDKFHTIPGDGFVIVIEGAREAEAAGIAGRLRRVLARTTHSGHVDAMRVTASFGVAERRAGESFDTAQTKAQDALDAAMHCGEDCVVMASESEEILCLPPPAPSQDGIAAKGA
>NZ_CP017057.1|WP_034900706.1|2173014_2173530_+|hypothetical-protein
MPDLPRQLRKNRLWPLAAFLVVAALGWGAHAAIGGVYSGAEARDLLEALSRAGLYLGSAIVTGSATTLALMLTMVGMIDRLETEFNREAYENVNMVAKLATGSLLLALIVLLAFTLPVGEFEDMPDQWFEILYDALFAGAVAMVGLMAATVVMIYLTLRRVLAAVTPGDAF
>NZ_CP017057.1|WP_034900707.1|2172500_2172911_+|BLUF-domain-containing-protein
MKQLIYRSQPFGFDHAMLDGILMAARRNNRENDITGALICRQDMYIQLVEGPDDAIDALYERILADDRHTDVKLEMSTAIEERMFPGWAMLDDTNPSMTFSKDEVEDGSIDRASPEALRTLFRRIAEKAAAARTPT
>NZ_CP017057.1|WP_034900708.1|2172154_2172418_+|acylphosphatase
MAINLIVHGRVQGVFYRDWTVRTARALGLAGWVRNLADGTVEAHLEGDAGATRTMIARMRDGPPRAEVTRIDQSPAEPQDLSAFGRR
>NZ_CP017057.1|WP_150132454.1|2171725_2171971_-|hypothetical-protein
MSKLDQARSILDAGRLVADIHFTDTIDDAQKAAIRDHLLDQAERMKSGLDDIKDDDDASYFLAVKYVECKAGWIQMNLQLN
>NZ_CP017057.1|WP_034900710.1|2169861_2171535_+|energy-dependent-translational-throttle-protein-EttA
MAAQYAFVMKNMTKTFPGAPKPVLSNINLQFYQGAKIGIVGPNGAGKSTLMKIMAGIDTDFSGEAWPGENITVGYLPQEPELDPTKTVLENVRDGARETAELVEEFNAVSAQMAEPDADFDVLGDKMAELQAKIDAVDGWTLDNQLEIAMEALRCPPSDASVENLSGGEKRRVALTRLLIQKPSILLLDEPTNHLDAESVEWLENHLKEYAGAVLMITHDRYFLDNVVGWILELDRGSYYPYEGNYSTYLEKKAKRLEQESREESGRQKQLSRELEWIRQTPSARQTKSKARIRKFEELQNSQDGRKPGKAQIVIQVPERLGGKVIEAHNISKAYGDKLLFENLSFMLPPGGIVGVIGPNGAGKSTLFRIITGQEKPDSGTIEIGDTVRLGYVDQSRDDLNPKNNVWEEISDGLDYMKVNGHDVSTRAYVGAFNFKGQDQQKNVGKLSGGERNRVHMAKMLKQGGNVLLLDEPTNDLDVETLGALEEAIENFAGCAVVISHDRFFLDRLATHILAFEGNSHVEWFEGNFEAYEEDKRRRLGDAADRPTRLAYKKLTR
>NZ_CP017057.1|WP_081845503.1|2168314_2169742_-|M28-family-peptidase
MNKTLLPLFAAPCIAIVAAGSLAALPPPQPSVEEQADRVLEGDRFAWEFVEGLTTEVGPRQAGTEAEARGREWAMNWLRQHGFENVRTEPFAMDTWVPGDIARARITEPFAQDLVVLPLGNSAATPEGGIEGELVFFRNVHELRAAPVGSLTGKIAYISHAMKPAQDGSHYGFAGPARWVGAGIAAQKGAIATVIKSVGTDYHRNPHTGGTTFPEGVEPIPAAAMSIPDAENVERMFARADGRQIRLGLELNPKALGETMSGNVVAEITGRNPELPPVLLACHIDSWWNSPGAFDDAAGCGIIAAAAFHVQRTGTPLRTIRVLMAGAEETGLWGSKAYSDAHIDEPIAVGLESDFGADRIWRLESNFRDSNPELHARLAKAVARFGVADSTVVATGGADLNIVRDQQGALIDLQQDGMRYFDLHHTPDDTLDKIDPVQLRQNVAVWTSVVGLLANEPRAILTGGTVPSAPPIMDQ
>NZ_CP017057.1|WP_034900712.1|2167722_2168265_-|DUF421-domain-containing-protein
MFVDEPVFDTVLRGMVLAAAALLWVTMLIRMNGLRSLSKMSNFDFVMTIALGSLVASAAVSTEWKAFVQALAAMASLFAVQWTMNQLRMKWPRFRTLVQNRPVVLVRDGVFQEDAMHDTRVTRADLFEKLRASNVSDISNVRAVILETTGDVSVVQGEKLDRDLLEGVDRPAQEKHERSD
>NZ_CP017057.1|WP_034900714.1|2166521_2167703_+|DUF1501-domain-containing-protein
MGDTIANPINRRSMLAGSLVLGSATLALPRMVFARTAGSRNLLFMLLRGAADGLAMLAPVGDPGFAALRERTLPDYTAARRAQGFFAIHPALDQVGAAYERGEAVFVHAAATAYRERSHFDGQNLLETGGTQPYGLKDGWLNRLVTLAGEAHGAPPRALAIAPTMPLALRGSAPASSYAPSALPQASGDFMDRVARLYAGDGQLCALWAQAMETRAMAEGSDAGNLRDAKTAGELAASLMREEEGARIAMIELGGWDSHANQPVQFARSARQLDALLGAYRAAMGSAWDRTLVLVATEFGRTARFNGTNGTDHGTAGAAIAMGGAVAGRRVIADWPGLGERALHEGRDLAATTALESMLAGAAAEHFALDPKTAMARLFPGRIAAPLAGIVRG
>NZ_CP017057.1|WP_034900700.1|2176379_2177048_+|2OG-Fe(II)-oxygenase
MPKAPAIPDQDALRRIGGQVTKRLDDDPGVYRIDTDKADLFAVGDFLTPAECQRLCLMIDEVARPSSLHEQGYESGFRTSYSGDLDPHNSFVMGISRRIDDLLGLNPATGEAIQGQRYLPGQEFKPHNDWFYTSEGYWPLERKRGGQRSWTAMAFLNEVEEGGHTHFTEIGVSIEPKPGVLLIWNNADRDGAPNELTKHAGTPVGKGVKYIITKWYRTRRWR
>NZ_CP017057.1|WP_069297607.1|2177081_2178695_-|lysine--tRNA-ligase
MSDSTFIAAAQSSKAWPFQEAQRLAKRLRDGKPGGEPVLFETGYGPSGLPHIGTFQEVLRTTLVRRAYEALTGGAPTRLVAFSDDLDGLRKVPDNVPNREMLAEHLGKPLSRIPDPFGTHESFAHHNNARLREFLDRFGFDYEFVSSSDRYNAGGFDEGIRKVLRGFDAIMDIMLPTLGEERRRTYSPLMPISPTSGAVLQVPIEVVDADAGLIRFTDEDGTQVEQSALGGKAKCQWKVDWAMRWVELGVDYEMYGKDLTDSGVQSGKIARVLGGNKPEGLIYELFLDAKGEKISKSKGNGLSIEEWLQYGSEESLGYYIFANPKSAKQLHAGVIPKAIDDYWQFREKLPEQELDKQLGNPVWHLLRANAAVDGPDAPGAGDKLPVPFSLLLNLVGVLGAEGSREAVWSYLANYIEDADPAAHPALDLLVDKALAYNRDFVAPTLVKRAPTPAEAEALRALDAELGAVPADMAAEDLQTIVYEIGKREEFGFGSLRDWFQALYQTLLGSAQGPRMGSFIALYGIEPTRKLIAEALSR
>NZ_CP017057.1|WP_034901688.1|2178850_2181610_+|helicase
MPALHASHGGNWLRAANGGTEAVSKGDAIMAAADTPVLILNAPLVANRLGYPDLSGLDLLEAFAFVHPARFCVPTARGLAEALGMEPPEGDSDVPEFLQRAAGALCAACEEPEWFERAGAWSALQSLERLRWPWAQVLRPHIARPERAEKWLFSALPEWEEAAERAPPRQVDLPAEAVLARLDHLTGEGAERREGQRAYAQDAARIFAPRTKREVPHVALAQAGTGIGKTLGYLAPASAWAEASGGTVWVSTYTKNLQRQLRSESRRAWPLKRPDGSPPVVVRKGRENYLCLLNLEDALQGGFAGRPAILAQLVARWAAFTRDGDMIGGDLPGWLGTLFRRRGIAALTDQRGECVYAGCPHYRKCFIERVGRESANADLVIANHALVMINAARGRDHAQRPTRIVFDEGHHVFEAADSTFAATLSGQEAIELRRWIIGPEKKARGRRRGLSARLADVASYDEAGGEAIDAASEAGKLLPSDGWLQRLVEGEPWGPLEKLLFAVRIITYARDESGGQEAGYGIETEASVLPGEVIEAAGAAAEALAAIRVPLIRLGGRLEAIIADPPDWLDGQGRARIEGARHSLSWRVELLAAWEALLDRLGGPADPEFVDWLAVDRNDAREFDVAIHRRWLDPMKPFARVVLEPAHGVMLTSATLTDRIGSATGDSRGAEWDSAIARSGAAHVDCAPMLTSASSPFDYASRAEVLIVTDIRKGDLPALAGAYARIIEASEGGVLGLFTAIRRMRAVHGRIADRLARAGLPLYAQHVDPIDTGTLVDIFRDDPRASLLGTDALRDGVDVPGRSLRCVALESVPWPRPDILHKARRAAAAEAGGSGSQYDDRIIRAKLAQGFGRLIRGKEDAGHFIVLSPAFPSRLLSAFPEGTAIRRVTLDQALARISAGLIGPDEPAEAGIENEEART
>NZ_CP017057.1|WP_034900699.1|2181606_2182239_+|hypothetical-protein
MIGDLDSALRAVAIGAWLLLLAQYAGVAMRGELRLPLALIVLANIAAMLAGGGLLLASSPAESVILMLAALAPFAVWLSVLRLIGQGPEPRTALVAALAVGASWAAVRYAGPAGEPAFYALRVLSFLFAADIVRAAMAGRARDTVPARRALRSWLAPLAALQAGLAPLAGIILGPGAFPAPISLAHAALTLTLAILLALALFVPERALLD
>NZ_CP017057.1|WP_034900698.1|2182327_2182867_+|histidine-phosphatase-family-protein
MKLLGLLRHAKSDWGDASSRDFDRGLNERGRRGAKAIGAHIRDHGTKWDILLASPAVRVKETLAVALPEIEPVFDTRLYLAGYETILEAVQNHAADTPKEPGAMLVSGHNPGLQELILELVSPSHESDLFREAAIKFPTAAYAILECPVDSWADLRPRTAKLAHFARPRDLDPELGPQR
>NZ_CP017057.1|WP_051697490.1|2182863_2183601_-|class-I-SAM-dependent-methyltransferase
MTDGAKDLRDLFAPGIEPIEARPGIWSALSRPVEGQSYDGRARLYDALIGNALYNRLAWGTSPASYEEFAHAASESGTGALLDAGCGTLVSTAGVHARSGRPTMLVDLSLDMLAAARERIGRVAGGVPDHVLFLQADLFDLPFIDGAFGAVLAQGVLHLFEDIAARARELARVTVPGGQVFASSLVADRGPGRLYLGALHRAGEVAAPRRLAELVARLEDSASRLARPIAARREGNMAFLTARPS
>NZ_CP017057.1|WP_034900696.1|2183620_2184250_-|SOS-response-associated-peptidase-family-protein
MCNLYRMTKNADEVAAWFDAVNAAGGANHGEEVYPGYPGLVAAGGQVRAMVWGFPLVMKGRSGQPLKPKPVNNCRTDKLDSFFWRYSFEERRCLIPLTGWAEAEGPKGAKTRTWLSLPDAPIFAAAGVWRESEEWGACYSMVMTESASSAAEDVHTRMPVLLAPDDYAGWVQGSPEEAKALCRPWGGDIALDRTDESWVKGRGTQQSLL
>NZ_CP017057.1|WP_034900694.1|2184249_2185164_-|4-hydroxybenzoate-octaprenyltransferase
MSEHVVPDSEHRGLVERLPQLPRDLAQLARFDRPIGWWLLFWPCAFGTLLGGYGVPWEALGALLGLYLAGAIAMRGAGCVYNDIVDAKLDASVARTAARPVASGRVSKRTAWIWLVCLSMVGLGVLLQLRIEAQAVALASLALVAAYPFMKRITWWPQAWLGMVFNWGLLVSWTQLRLDHWDAIGALYAGCICWVIGYDTIYALQDREDDALVGIRSSALAMGARVHAGIAGFYAATIGLWALGFWLFRPDPLALAALLPVAGHLAWQVATLDAEDPANPLERFRSNRWAGALMAAACFVVGFA
>NZ_CP017057.1|WP_034900692.1|2185408_2185810_-|hypothetical-protein
MIARFCQFLIAAIFLVLGGWALVAPASVIELAVTEAYRDDAFITRFALACFGAQAVLFGLVALASKWTSRTFALYAVLLIPFFVFNWYFHYEVPVLTSIGMLDFAGNVVMFIAAIVGWRAALAEERAKTRTFA
>NZ_CP017057.1|WP_034900691.1|2185849_2186605_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MPATPNWPPKSAPRLFVEPELAAGQQRVIEGNPAHYLARVMRVAPGDAVILCDDATGEWAARVVEADKRSVTLEVAERLREREEVPDLWLCPALLKKDRFDLVLEKATELGAARIQPVLTRRCVADKLNVGRASTIITEAAEQCARTALPEIGDPVKLDALLGDWPETRALFFADEDGGEPVADAFCYHDGPAAILIGPEGGFDDAERAAIRAHPAARPVSLGPRILRGETAAIAALAVWMAEAGDWLDDE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017057_1	1.3\|2175611\|22\|NZ_CP017057\|CRISPRCasFinder	2175611-2175632	22	NZ_CP017057.1	1685000-1685021	2	0.909

1. spacer 1.3|2175611|22|NZ_CP017057|CRISPRCasFinder matches to position: 1685000-1685021, mismatch: 2, identity: 0.909

ccgaccggttcgatcgccgcgc	CRISPR spacer
ccgaccggttcgaccggcgcgc	Protospacer
*************.** *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017057_1	1.3\|2175611\|22\|NZ_CP017057\|CRISPRCasFinder	2175611-2175632	22	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	252866-252887	1	0.955
NZ_CP017057_1	1.3\|2175611\|22\|NZ_CP017057\|CRISPRCasFinder	2175611-2175632	22	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	29326-29347	1	0.955
NZ_CP017057_1	1.3\|2175611\|22\|NZ_CP017057\|CRISPRCasFinder	2175611-2175632	22	NZ_CP018064	Rhodococcus sp. 2G plasmid p1, complete sequence	63132-63153	1	0.955
NZ_CP017057_1	1.3\|2175611\|22\|NZ_CP017057\|CRISPRCasFinder	2175611-2175632	22	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	96845-96866	2	0.909
NZ_CP017057_1	1.3\|2175611\|22\|NZ_CP017057\|CRISPRCasFinder	2175611-2175632	22	NZ_CP018172	Mesorhizobium oceanicum strain B7 plasmid unnamed1, complete sequence	97634-97655	2	0.909
NZ_CP017057_1	1.4\|2175656\|25\|NZ_CP017057\|CRISPRCasFinder	2175656-2175680	25	NC_023136	Leisingera methylohalidivorans DSM 14336 plasmid unnamed, complete sequence	136769-136793	2	0.92
NZ_CP017057_1	1.1\|2175512\|22\|NZ_CP017057\|CRISPRCasFinder	2175512-2175533	22	NZ_CP036407	Komagataeibacter saccharivorans strain JH1 plasmid p92689, complete sequence	243-264	3	0.864
NZ_CP017057_1	1.3\|2175611\|22\|NZ_CP017057\|CRISPRCasFinder	2175611-2175632	22	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	716219-716240	3	0.864
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_010627	Paraburkholderia phymatum STM815 plasmid pBPHY02, complete sequence	478321-478351	5	0.839
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_009468	Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence	124284-124314	5	0.839
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	446892-446922	6	0.806
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	306559-306589	6	0.806
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	220359-220389	6	0.806
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_031059	Rhodovulum phage vB_RhkS_P1, complete genome	37585-37615	6	0.806
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	458948-458978	6	0.806
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_010335	Caulobacter sp. K31 plasmid pCAUL01, complete sequence	142535-142565	7	0.774
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_015178	Acidiphilium multivorum AIU301 plasmid pACMV1, complete sequence	186362-186392	7	0.774
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP022992	Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence	146524-146554	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	1022512-1022542	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	830083-830113	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP010729	Phaeobacter inhibens strain P88 plasmid pP88_d, complete sequence	90768-90798	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP015268	Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 1, complete sequence	59588-59618	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP015279	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence	21364-21394	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	14300-14330	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1304069-1304099	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	655111-655141	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	MH744418	Streptomyces phage JustBecause, complete genome	5806-5836	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	MT310898	Streptomyces phage Kela, complete genome	5797-5827	8	0.742
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1118123-1118153	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	792466-792496	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1118244-1118274	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	842343-842373	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	842335-842365	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	263188-263218	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP024895	Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence	304127-304157	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5758820-5758850	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_008308	Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete sequence	254663-254693	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	842342-842372	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP029602	Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence	30832-30862	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	163615-163645	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	850801-850831	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	814047-814077	9	0.71
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	366862-366892	10	0.677
NZ_CP017057_1	1.2\|2175557\|31\|NZ_CP017057\|CRISPRCasFinder	2175557-2175587	31	NC_017833	Streptomyces sp. FR1 plasmid pFP4, complete sequence	36721-36751	10	0.677

1. spacer 1.3|2175611|22|NZ_CP017057|CRISPRCasFinder matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 1, identity: 0.955

ccgaccggttcgatcgccgcgc	CRISPR spacer
gcgaccggttcgatcgccgcgc	Protospacer
 *********************

2. spacer 1.3|2175611|22|NZ_CP017057|CRISPRCasFinder matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.955

ccgaccggttcgatcgccgcgc	CRISPR spacer
ccgaccggttcgatcaccgcgc	Protospacer
***************.******

3. spacer 1.3|2175611|22|NZ_CP017057|CRISPRCasFinder matches to NZ_CP018064 (Rhodococcus sp. 2G plasmid p1, complete sequence) position: , mismatch: 1, identity: 0.955

ccgaccggttcgatcgccgcgc	CRISPR spacer
ccgaccggttcgatcaccgcgc	Protospacer
***************.******

4. spacer 1.3|2175611|22|NZ_CP017057|CRISPRCasFinder matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgaccggttcgatcgccgcgc	CRISPR spacer
gcgaccggatcgatcgccgcgc	Protospacer
 ******* *************

5. spacer 1.3|2175611|22|NZ_CP017057|CRISPRCasFinder matches to NZ_CP018172 (Mesorhizobium oceanicum strain B7 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.909

ccgaccggttcgatcgccgcgc	CRISPR spacer
ccgaccggttcgctcgccgcga	Protospacer
************ ********

6. spacer 1.4|2175656|25|NZ_CP017057|CRISPRCasFinder matches to NC_023136 (Leisingera methylohalidivorans DSM 14336 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.92

cggatcgcagggccgatcgcaggga	CRISPR spacer
cggatcgcagggccgttctcaggga	Protospacer
*************** ** ******

7. spacer 1.1|2175512|22|NZ_CP017057|CRISPRCasFinder matches to NZ_CP036407 (Komagataeibacter saccharivorans strain JH1 plasmid p92689, complete sequence) position: , mismatch: 3, identity: 0.864

ctcggcaggccgaacgccggct	CRISPR spacer
gcaggcaggccgaacgccggct	Protospacer
 . *******************

8. spacer 1.3|2175611|22|NZ_CP017057|CRISPRCasFinder matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 3, identity: 0.864

ccgaccggttcgatcgccgcgc	CRISPR spacer
acgaccggttcgatcgccgctt	Protospacer
 ******************* .

9. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_010627 (Paraburkholderia phymatum STM815 plasmid pBPHY02, complete sequence) position: , mismatch: 5, identity: 0.839

aaagccgcgcggatcgccgcgcg-gaccgcgt	CRISPR spacer
gaagccgcgctgatcgccgcgcgcgaactcg-	Protospacer
.********* ************ ** * **

10. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_009468 (Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence) position: , mismatch: 5, identity: 0.839

aaagccgcgcggatcgccgcgcggaccgcgt-	CRISPR spacer
aaagccccgcggatcgcggcgcgg-cggcgct	Protospacer
****** ********** ****** * ***.

11. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 6, identity: 0.806

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
gccgccgcgcggatcgccgcgcggatcgccg	Protospacer
.  **********************.***

12. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 6, identity: 0.806

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
caccgcgcgaggatcgccgcgcgaaccgcgt	Protospacer
 *   **** *************.*******

13. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.806

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
agggtcggacggatcgccgcgaggaccgcgt	Protospacer
*..*.** .************ *********

14. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_031059 (Rhodovulum phage vB_RhkS_P1, complete genome) position: , mismatch: 6, identity: 0.806

aaagccg-cgcggatcgccgcgcggaccgcgt	CRISPR spacer
-gggccgttccggatcgccgcgctgaccgcgt	Protospacer
 ..**** . ************* ********

15. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 6, identity: 0.806

-aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tccagcc-tgcggatcgtcgcgcggacggcgt	Protospacer
   **** .********.********* ****

16. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_010335 (Caulobacter sp. K31 plasmid pCAUL01, complete sequence) position: , mismatch: 7, identity: 0.774

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tgcgaggcgctgatcgccgcgccgaccgcgt	Protospacer
 . *  **** *********** ********

17. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_015178 (Acidiphilium multivorum AIU301 plasmid pACMV1, complete sequence) position: , mismatch: 7, identity: 0.774

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
cagccggcgcggatcgcggcgcggatcgcgg	Protospacer
 *. * *********** *******.****

18. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP022992 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN2, complete sequence) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
cgtccagcgcggatcgccgcgcggcacgcgc	Protospacer
 .  * ******************  ****.

19. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
cgcccggcgccgatcgccgcgcgcaccgcga	Protospacer
 .  * **** ************ ******

20. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
caagccgcgcggatcgccgctcgcggcaagg	Protospacer
 ******************* ** . *. *

21. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP010729 (Phaeobacter inhibens strain P88 plasmid pP88_d, complete sequence) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
gaagccgcgcggatcgctgcgcagaatgacg	Protospacer
.****************.****.** .*

22. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP015268 (Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
aaagcagctcggatcgccgcgcgagacaagc	Protospacer
***** ** **************.. *. *.

23. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP015279 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
aaagcagctcggatcgccgcgcgagacaagc	Protospacer
***** ** **************.. *. *.

24. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggac-cgcgt	CRISPR spacer
gcagccgcgccgatcgccgcgccgatatacg-	Protospacer
. ******** *********** **. ..**

25. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggac-cgcgt	CRISPR spacer
gcagccgcgccgatcgccgcgccgatatacg-	Protospacer
. ******** *********** **. ..**

26. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
gaggtcgcgcggaccgccgcgcagaccggcc	Protospacer
.*.*.********.********.*****  .

27. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to MH744418 (Streptomyces phage JustBecause, complete genome) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
acgctcgcgcagatcgccgcccggaccggga	Protospacer
* . .*****.********* ******* *

28. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to MT310898 (Streptomyces phage Kela, complete genome) position: , mismatch: 8, identity: 0.742

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
acgctcgcgcagatcgccgcccggaccggga	Protospacer
* . .*****.********* ******* *

29. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tgcgccgcgcggatcgccgcgtcgacttccg	Protospacer
 . ******************. ***. *

30. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tgcgccgcgcggatcgccgcgtcgacttccg	Protospacer
 . ******************. ***. *

31. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tgcgccgcgcggatcgccgcgtcgacttccg	Protospacer
 . ******************. ***. *

32. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tgcgccgcgcggatcgccgcgtcgacttccg	Protospacer
 . ******************. ***. *

33. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tgcgccgcgcggatcgccgcgtcgacttccg	Protospacer
 . ******************. ***. *

34. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
aaagccgcgcggatcggcgctcgctgaggag	Protospacer
**************** *** **    * .

35. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP024895 (Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
ctggtggcgcggatcgccgagctgaccgctc	Protospacer
  .*. ************* ** ****** .

36. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
cgctcgccgcggatcgccgcgcgaaccccgg	Protospacer
 .  *  ****************.*** **

37. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_008308 (Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
cgcgagtcgcggatcgccgcgctgatcgcgc	Protospacer
 . *   *************** **.****.

38. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tgcgccgcgcggatcgccgcgtcgacttccg	Protospacer
 . ******************. ***. *

39. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP029602 (Streptomyces sp. WAC 01438 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
ctcacgtcgctgatcgccgagcggaccgcgc	Protospacer
   .*  *** ******** **********.

40. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
aaagccgcgcggatcggcgctcgctgaggag	Protospacer
**************** *** **    * .

41. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tgcgccgcgcggatcgccgcgtcgacttccg	Protospacer
 . ******************. ***. *

42. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
tgcgccgcgcggatcgccgcgtcgacttccg	Protospacer
 . ******************. ***. *

43. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 10, identity: 0.677

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
gcgcaggcgcggatcgctgcgcgggccgctc	Protospacer
. .   ***********.******.**** .

44. spacer 1.2|2175557|31|NZ_CP017057|CRISPRCasFinder matches to NC_017833 (Streptomyces sp. FR1 plasmid pFP4, complete sequence) position: , mismatch: 10, identity: 0.677

aaagccgcgcggatcgccgcgcggaccgcgt	CRISPR spacer
gcgcaggcccggatcgccgcgcagaccgccc	Protospacer
. .   ** *************.****** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

387522 : 465331

Paenibacillus_phage(15.38%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034906604.1\|387522_388275_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_034906605.1\|388323_389070_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_034906607.1\|389175_389640_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	6.0e-06	31.9
WP_034906609.1\|389650_390001_+	arsenate reductase	NA	NA	NA	NA
WP_034906612.1\|389979_391050_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_034906616.1\|391054_391792_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_034906691.1\|391904_393170_+	aspartate kinase	NA	NA	NA	NA
WP_034906618.1\|393299_394019_+	helix-turn-helix domain-containing protein	Q6J1N3	Burkholderia_virus	2.7e-05	34.2
WP_034906619.1\|394238_395267_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_034906622.1\|395278_396478_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_034906625.1\|396489_397512_+	nitronate monooxygenase	NA	NA	NA	NA
WP_034906628.1\|397516_398383_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
WP_051698448.1\|398446_398950_+	DUF2306 domain-containing protein	NA	NA	NA	NA
WP_034906695.1\|398954_401132_-	PQQ-dependent dehydrogenase, methanol/ethanol family	NA	NA	NA	NA
WP_034906630.1\|401246_402128_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_034906631.1\|402147_403110_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_069297424.1\|403771_404878_-	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_034906638.1\|405059_407045_-	M13 family metallopeptidase	NA	NA	NA	NA
WP_150132391.1\|407041_407839_-	hypothetical protein	NA	NA	NA	NA
WP_150132392.1\|407793_408483_-	hypothetical protein	NA	NA	NA	NA
WP_034906645.1\|408479_409340_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.7e-27	32.8
WP_034906649.1\|409829_410963_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_034906652.1\|411075_411813_-	hypothetical protein	NA	NA	NA	NA
WP_069297425.1\|411815_412841_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_051698455.1\|412837_414160_-	hypothetical protein	NA	NA	NA	NA
WP_034906654.1\|415019_416090_+	hypothetical protein	NA	NA	NA	NA
WP_034906655.1\|416758_417049_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2L1IV28	Escherichia_phage	1.8e-16	50.5
WP_034906658.1\|417038_417341_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_150132393.1\|419574_420168_+	isopropylmalate isomerase	NA	NA	NA	NA
WP_150132387.1\|420369_421130_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	2.7e-11	34.9
WP_150132394.1\|421371_422513_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_034901636.1\|422602_423439_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.2e-34	35.2
WP_034901634.1\|423435_424938_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_051697670.1\|426776_427538_-	CpsD/CapB family tyrosine-protein kinase	NA	NA	NA	NA
WP_051697669.1\|427565_429032_-	hypothetical protein	NA	NA	NA	NA
WP_150132395.1\|429028_431812_-	hypothetical protein	NA	NA	NA	NA
WP_081845551.1\|432073_432718_-	polysaccharide biosynthesis/export family protein	NA	NA	NA	NA
WP_150132396.1\|433165_433486_+	hypothetical protein	NA	NA	NA	NA
WP_181443738.1\|433470_434922_+	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA	NA	NA	NA
WP_081845550.1\|434911_435715_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA
WP_051697667.1\|435707_442199_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.4e-52	38.5
WP_069297430.1\|442254_443208_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_034901660.1\|443235_447897_+	LLM class flavin-dependent oxidoreductase	A0A2K9KZV5	Tupanvirus	3.5e-21	34.0
WP_161490027.1\|447986_448631_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_174544528.1\|448641_449643_+	hypothetical protein	NA	NA	NA	NA
WP_034901658.1\|449629_450424_+	hypothetical protein	NA	NA	NA	NA
WP_034901656.1\|450689_451523_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_034901654.1\|452043_452412_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_034901650.1\|452408_453110_-	hypothetical protein	NA	NA	NA	NA
WP_081845548.1\|453109_454624_-	glycosyltransferase family 2 protein	A0A1D8KNV9	Synechococcus_phage	2.0e-50	42.1
WP_034901646.1\|454634_455258_-	HAD family phosphatase	M1HXP3	Paramecium_bursaria_Chlorella_virus	1.7e-35	41.9
WP_083228513.1\|455259_455982_-	hypothetical protein	A0A2H4UUJ1	Bodo_saltans_virus	9.0e-09	29.7
WP_161490028.1\|456017_457064_-	hypothetical protein	NA	NA	NA	NA
WP_069297433.1\|457340_458723_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_034901642.1\|459348_460707_+	hypothetical protein	NA	NA	NA	NA
WP_034901639.1\|461427_462906_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.7e-94	40.3
WP_034901636.1\|462995_463832_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.2e-34	35.2
WP_034901634.1\|463828_465331_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

488667 : 494974

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034905525.1\|488667_489558_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	3.2e-93	58.5
WP_034905289.1\|489554_490100_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.9e-49	49.7
WP_034905292.1\|490096_490954_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-32	37.6
WP_034905294.1\|490946_492002_+	dTDP-glucose 4,6-dehydratase	A0A1D8EQC0	Escherichia_phage	6.0e-78	44.1
WP_034905296.1\|492503_493673_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	3.2e-24	27.0
WP_081845716.1\|493669_494974_-	UDP-N-acetyl-D-mannosamine dehydrogenase	A7IWZ0	Paramecium_bursaria_Chlorella_virus	1.8e-20	26.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage