CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017039	Anaerolineaceae bacterium oral taxon 439 strain W11661 chromosome, complete genome	3 crisprs	cas2,cas1,cas4,cas3,cas7b,cas8c,cas5,WYL,DinG,csa3	0	7	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017039_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017039_1

605867-607622

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CRISPRCasFinder
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CRT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	PILER-CR
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CRISPRCasFinder

25 spacers

cas2,cas1,cas4,cas3,cas7b,cas8c,cas5

The CRISPR arrays of NZ_CP017039_1

>merge|NZ_CP017039|1|605867-607622|CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder
TTTGAAGCGCAGACGCCCATGAGGGGCGCGACAGTACGGATAAAATCACATACCGTGTCTTTTCCAATTTCAATCCACGCGCCCACGCGGGGTGCGTCCTAAATGTGCGGGCAATGTCCTTCTCGCCAGCAATTTCAATCCACGCGCCCACGAGGGGCGCGACAAATAGAATACAGATCAAAATAAAATGGATCACAGATTTCAATCCACGCGCCCACGAGGGGCGCGACGCCGCCGGACAGGTCGATCGATACGCGCGAAACATTTCAATCCACGCGCCCACGAGGGGCGCGACAAGATGGGGCGGGTAACGGTCGAAGGGAGCCGCGAATTTCAATCCACGCGCCCACGAGGGGCGCGACATCGGCGCGTATCCATACCACGCTTGTATAGTCATTATTTCAATCCACGCGCCCACGAGGGGCGCGACCCTCTTCACACCCTTTATTCCCACAACATTTAGATTTCAATCCACGCGCCCACGAGGGGCGCGACCCTGCGTTGCTCAATCCAACCTCGTAGGATTGCTTCATTTCAATCCACGCGCCACGAGGGGCGCGACACCAGCCGGAGGGTATTTTCACGGGCATCGGCGAATTTCAATCCACGCGCCCACGAGGGGCGCGACCCAATAGATTTGGCGTACTCCTGCCACATCTTGGCATTTCAATCCACGCGCCCACGAGGGGCGCGACCGCCTGCGCAGAAATATCCACGCCAAACAGGATAATTTCAATCCACGCGCCCACGAGGGGCGCGACATTTTTTCATACGGTAGAATGGTGCGTAGTAAAAATTTCAATCCACGCGCCCACGAGGGGCGCGACATACTCAACTGCCCGATGGAAAAAGAATAGAATTATTTCAATCCACGCGCCCACGAGGGGCGCGACGCTGATGGAGAATGGGTAAATACCAAATCTTATGATTTCAATCCACGCGCCCACGAGGGGCGCGACGACGAGGAGTGGATTTTAAGGCGCTCAATAGAATATTTCAATCCACGCGCCCACGAGGGGCGCGACACATGATTCGCCTTGAACGAAATTATCTTAGGGTTATTTCAATCCACGCGCCCACGAGGGGCGCGACGCCCCAGCTCAGAGCACAAATTTGTGAAAAAATAATTTCAATCCACGCGCCCACGAGGGGCGCGACTTTCCCTCCTCCGTCACGCTTACGCCGTCCAATGATTTCAATCCACGCGCCCACGAGGGGCGCGACATTACTCACAGCTTCAGGCGAATTCAAAAAGTCAATTTCAATCCACGCGCCCACGAGGGGCGCGACACGAAGGATGGAGAAATCATGAGCGCGTACCCGATTTCAATCCACGCGCCCACGAGGGGCGCGACGATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATGATTTCAATCCACGCGCCCACGAGGGGCGCGACGATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATGATTTCAATCCACGCGCCCACGAGGGGCGCGACGAGGTTGCCAAGCAACAAATCGAAGATTGGAAAAATTTCAATCCACGCGCCCACGAGGGGCGCGACTGGAAATGGTTCCGTGTATTCGGATTGAAGATTTATTTCAATCCACGCGCCCACGAGGGGCGCGACGAGAACGAAGCAGGAAAATGAGAGAGATTTAGAAAATTTCAATCCACGCGCCCACGAGGGGCGCGACCGCGCTGCAGCAGGACTTACCGCGGGTTAAGGTTATTTCAATCCACGCGCCCACGAGGGGCGCGAC

>NZ_CP017039|1|1|605867-606362|CRISPRCasFinder
TTTGAAGCGCAGACGCCCATGAGGGGCGCGAC	AGTACGGATAAAATCACATACCGTGTCTTTTCCA
ATTTCAATCCACGCGCCCACGCGGGGTGCGTC	CTAAATGTGCGGGCAATGTCCTTCTCGCCAGCA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	AAATAGAATACAGATCAAAATAAAATGGATCACAG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCCGCCGGACAGGTCGATCGATACGCGCGAAAC
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	AAGATGGGGCGGGTAACGGTCGAAGGGAGCCGCGA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATCGGCGCGTATCCATACCACGCTTGTATAGTCATT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CCTCTTCACACCCTTTATTCCCACAACATTTAG
ATTTCAATCCACGCGCCCACGAGGGGCGCGACCCTGCGTTGCTCAATCCAACCTCGTAGGATTGCTTCATTTCAATCCACGCGCCACGAGGGGCGCGACACCAGCCGGAGGGTATTTTCACGGGCATCGGCGAATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CCAATAGATTTGGCGTACTCCTGCCACATCTTGGC
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CGCCTGCGCAGAAATATCCACGCCAAACAGGATA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATTTTTTCATACGGTAGAATGGTGCGTAGTAAAA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATACTCAACTGCCCGATGGAAAAAGAATAGAATT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCTGATGGAGAATGGGTAAATACCAAATCTTATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GACGAGGAGTGGATTTTAAGGCGCTCAATAGAAT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ACATGATTCGCCTTGAACGAAATTATCTTAGGGTT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCCCCAGCTCAGAGCACAAATTTGTGAAAAAATA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	TTTCCCTCCTCCGTCACGCTTACGCCGTCCAATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATTACTCACAGCTTCAGGCGAATTCAAAAAGTCA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ACGAAGGATGGAGAAATCATGAGCGCGTACCCG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GAGGTTGCCAAGCAACAAATCGAAGATTGGAAAA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	TGGAAATGGTTCCGTGTATTCGGATTGAAGATTT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GAGAACGAAGCAGGAAAATGAGAGAGATTTAGAAA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CGCGCTGCAGCAGGACTTACCGCGGGTTAAGGTT


>NZ_CP017039|1|1|605933-607622|CRT
ATTTCAATCCACGCGCCCACGCGGGGTGCGTC	CTAAATGTGCGGGCAATGTCCTTCTCGCCAGCA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	AAATAGAATACAGATCAAAATAAAATGGATCACAG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCCGCCGGACAGGTCGATCGATACGCGCGAAAC
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	AAGATGGGGCGGGTAACGGTCGAAGGGAGCCGCGA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATCGGCGCGTATCCATACCACGCTTGTATAGTCATT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CCTCTTCACACCCTTTATTCCCACAACATTTAG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CCTGCGTTGCTCAATCCAACCTCGTAGGATTGCTTC
ATTTCAATCCACGCGCCACGAGGGGCGCGACA	CCAGCCGGAGGGTATTTTCACGGGCATCGGCGA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CCAATAGATTTGGCGTACTCCTGCCACATCTTGGC
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CGCCTGCGCAGAAATATCCACGCCAAACAGGATA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATTTTTTCATACGGTAGAATGGTGCGTAGTAAAA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATACTCAACTGCCCGATGGAAAAAGAATAGAATT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCTGATGGAGAATGGGTAAATACCAAATCTTATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GACGAGGAGTGGATTTTAAGGCGCTCAATAGAAT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ACATGATTCGCCTTGAACGAAATTATCTTAGGGTT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCCCCAGCTCAGAGCACAAATTTGTGAAAAAATA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	TTTCCCTCCTCCGTCACGCTTACGCCGTCCAATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATTACTCACAGCTTCAGGCGAATTCAAAAAGTCA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ACGAAGGATGGAGAAATCATGAGCGCGTACCCG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GAGGTTGCCAAGCAACAAATCGAAGATTGGAAAA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	TGGAAATGGTTCCGTGTATTCGGATTGAAGATTT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GAGAACGAAGCAGGAAAATGAGAGAGATTTAGAAA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CGCGCTGCAGCAGGACTTACCGCGGGTTAAGGTT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC

>NZ_CP017039|1|1|605998-607622|PILER-CR
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	AAATAGAATACAGATCAAAATAAAATGGATCACAG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCCGCCGGACAGGTCGATCGATACGCGCGAAAC
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	AAGATGGGGCGGGTAACGGTCGAAGGGAGCCGCGA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATCGGCGCGTATCCATACCACGCTTGTATAGTCATT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CCTCTTCACACCCTTTATTCCCACAACATTTAG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CCTGCGTTGCTCAATCCAACCTCGTAGGATTGCTTC
ATTTCAATCCACGCGCCACGAGGGGCGCGACA	CCAGCCGGAGGGTATTTTCACGGGCATCGGCGAA
TTTCAATCCACGCGCCCACGAGGGGCGCGACC	CAATAGATTTGGCGTACTCCTGCCACATCTTGGCA
TTTCAATCCACGCGCCCACGAGGGGCGCGACC	GCCTGCGCAGAAATATCCACGCCAAACAGGATAA
TTTCAATCCACGCGCCCACGAGGGGCGCGACA	TTTTTTCATACGGTAGAATGGTGCGTAGTAAAAA
TTTCAATCCACGCGCCCACGAGGGGCGCGACA	TACTCAACTGCCCGATGGAAAAAGAATAGAATTA
TTTCAATCCACGCGCCCACGAGGGGCGCGACG	CTGATGGAGAATGGGTAAATACCAAATCTTATGA
TTTCAATCCACGCGCCCACGAGGGGCGCGACG	ACGAGGAGTGGATTTTAAGGCGCTCAATAGAATA
TTTCAATCCACGCGCCCACGAGGGGCGCGACA	CATGATTCGCCTTGAACGAAATTATCTTAGGGTTA
TTTCAATCCACGCGCCCACGAGGGGCGCGACG	CCCCAGCTCAGAGCACAAATTTGTGAAAAAATAA
TTTCAATCCACGCGCCCACGAGGGGCGCGACT	TTCCCTCCTCCGTCACGCTTACGCCGTCCAATGA
TTTCAATCCACGCGCCCACGAGGGGCGCGACA	TTACTCACAGCTTCAGGCGAATTCAAAAAGTCAA
TTTCAATCCACGCGCCCACGAGGGGCGCGACA	CGAAGGATGGAGAAATCATGAGCGCGTACCCGA
TTTCAATCCACGCGCCCACGAGGGGCGCGACG	ATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATGA
TTTCAATCCACGCGCCCACGAGGGGCGCGACG	ATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATGA
TTTCAATCCACGCGCCCACGAGGGGCGCGACG	AGGTTGCCAAGCAACAAATCGAAGATTGGAAAAA
TTTCAATCCACGCGCCCACGAGGGGCGCGACT	GGAAATGGTTCCGTGTATTCGGATTGAAGATTTA
TTTCAATCCACGCGCCCACGAGGGGCGCGACG	AGAACGAAGCAGGAAAATGAGAGAGATTTAGAAAA
TTTCAATCCACGCGCCCACGAGGGGCGCGACC	GCGCTGCAGCAGGACTTACCGCGGGTTAAGGTTA
TTTCAATCCACGCGCCCACGAGGGGCGCGAC

>NZ_CP017039|1|2|606463-607622|CRISPRCasFinder
	AGTACGGATAAAATCACATACCGTGTCTTTTCCA
ATTTCAATCCACGCGCCCACGCGGGGTGCGTC	CTAAATGTGCGGGCAATGTCCTTCTCGCCAGCA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	AAATAGAATACAGATCAAAATAAAATGGATCACAG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCCGCCGGACAGGTCGATCGATACGCGCGAAAC
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	AAGATGGGGCGGGTAACGGTCGAAGGGAGCCGCGA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATCGGCGCGTATCCATACCACGCTTGTATAGTCATT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CCTCTTCACACCCTTTATTCCCACAACATTTAG
ATTTCAATCCACGCGCCCACGAGGGGCGCGACCCTGCGTTGCTCAATCCAACCTCGTAGGATTGCTTCATTTCAATCCACGCGCCACGAGGGGCGCGACACCAGCCGGAGGGTATTTTCACGGGCATCGGCGAATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CCAATAGATTTGGCGTACTCCTGCCACATCTTGGC
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CGCCTGCGCAGAAATATCCACGCCAAACAGGATA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATTTTTTCATACGGTAGAATGGTGCGTAGTAAAA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATACTCAACTGCCCGATGGAAAAAGAATAGAATT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCTGATGGAGAATGGGTAAATACCAAATCTTATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GACGAGGAGTGGATTTTAAGGCGCTCAATAGAAT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ACATGATTCGCCTTGAACGAAATTATCTTAGGGTT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GCCCCAGCTCAGAGCACAAATTTGTGAAAAAATA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	TTTCCCTCCTCCGTCACGCTTACGCCGTCCAATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ATTACTCACAGCTTCAGGCGAATTCAAAAAGTCA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	ACGAAGGATGGAGAAATCATGAGCGCGTACCCG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GATTCACCGCCTTTCAACAGCCTCGAAGAGGGCATG
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GAGGTTGCCAAGCAACAAATCGAAGATTGGAAAA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	TGGAAATGGTTCCGTGTATTCGGATTGAAGATTT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	GAGAACGAAGCAGGAAAATGAGAGAGATTTAGAAA
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC	CGCGCTGCAGCAGGACTTACCGCGGGTTAAGGTT
ATTTCAATCCACGCGCCCACGAGGGGCGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017039.1\|WP_083222007.1\|614951_615626_-\|CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP017039.1\|WP_069177847.1\|599972_600983_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP017039.1\|WP_069177846.1\|598137_599073_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP017039.1\|WP_069177856.1\|611988_612849_-\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP017039.1\|WP_069177845.1\|596538_598053_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173864
NZ_CP017039.1\|WP_159060124.1\|605272_605587_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_069177855.1\|609808_611986_-\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP017039.1\|WP_069177848.1\|601950_602946_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_069177857.1\|612886_614959_-\|hypothetical-protein	cas8c	mkCas0173_cas8c_CAS-I-C	unknown
NZ_CP017039.1\|WP_069177853.1\|608084_609113_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP017039.1\|WP_069177859.1\|616682_618905_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP017039.1\|WP_069177860.1\|619032_619962_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP017039.1\|WP_022849273.1\|600975_601950_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|185037
NZ_CP017039.1\|WP_069177849.1\|602961_603930_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_069177858.1\|615896_616505_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_069177852.1\|607782_608073_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP017039.1\|WP_069177850.1\|603935_604913_+\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP017039.1\|WP_069177854.1\|609109_609778_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP017039.1\|WP_069177844.1\|595563_596406_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_029737670.1\|599077_599959_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094

Protein	Function_ID	Function_description	E-value
NZ_CP017039.1\|WP_069177847.1\|599972_600983_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.84132e-170
NZ_CP017039.1\|WP_069177846.1\|598137_599073_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.56544e-134
NZ_CP017039.1\|WP_069177856.1\|611988_612849_-\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.53506e-73
NZ_CP017039.1\|WP_069177845.1\|596538_598053_+\|hypothetical-protein	gnl\|CDD\|173864	cd08499, PBP2_Ylib_like, The substrate-binding component of an uncharacterized ABC-type peptide import system Ylib contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an uncharacterized ATP-binding cassette (ABC)-type peptide transport system YliB. Although the ligand specificity of Ylib protein is not known, it shares significant sequence similarity to the ABC-type dipeptide and oligopeptide binding proteins. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	6.41164e-166
NZ_CP017039.1\|WP_069177860.1\|619032_619962_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	5.36932e-29
NZ_CP017039.1\|WP_069177855.1\|609808_611986_-\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.78206e-28
NZ_CP017039.1\|WP_083222007.1\|614951_615626_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	8.79602e-30
NZ_CP017039.1\|WP_069177853.1\|608084_609113_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP017039.1\|WP_069177859.1\|616682_618905_+\|hypothetical-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	2.00012e-07
NZ_CP017039.1\|WP_022849273.1\|600975_601950_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	3.71233e-133
NZ_CP017039.1\|WP_069177852.1\|607782_608073_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.07962e-31
NZ_CP017039.1\|WP_029737670.1\|599077_599959_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.98365e-105
NZ_CP017039.1\|WP_069177854.1\|609109_609778_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.28691e-32
NZ_CP017039.1\|WP_069177850.1\|603935_604913_+\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	8.79646e-69

>NZ_CP017039.1|WP_159060124.1|605272_605587_-|hypothetical-protein
MFNLCSAKWIERVLDLFHIKKAIRSAYGDAIDLEPVFTILFSEGFNAIFNRLLHLNATGKLTTQRERQRCFDDFKRQEDESLPLLPRFIKAKKCLPSIIHFSSV
>NZ_CP017039.1|WP_069177850.1|603935_604913_+|FAD:protein-FMN-transferase
MQKHEWTQGIDFFAFDTLCSIRIMPYSRSAAAPILKDAWETAHLVEQTLNMFDETSELSCLCNNYAISFPFQASAMLYSFIEDNLRIAALTDGQFDFTVGALIKLWDFLADNPEVPAKEKIADLLQSVGYQHLSLLPERRSVVIDCKGIQLDPGASGKGFALDKVSVRLRQHHVQHAVLDFGGNIFTIGGKWDAVGSPGGRPWITALRNPTDPGSVIGSVPLVDAGIATSSWYEHCFKKDGEVYYHILNPYTGFPLPMELKSMTIISPSALYSDILSTAFFVLGLEKGMRLAEALKEDIGTIEYVAVTKDDRILSSPGAGFNSAA
>NZ_CP017039.1|WP_069177849.1|602961_603930_+|hypothetical-protein
MDNAGNSPVWSVQPPQGLIKGDYYHLEERFPPYYHGVEGQFPDDPGHLGIVDVIKSDGRMVFIELNEITAPSYYNHLYRNISKRRSDYSFWQYTKDRMKKAGSVLTMGLEYVEDQMLKEQRLTGEFDLLSSASGSVKKLLKIADKLEAEINKPSSKKMYSYSEKYGYGLTGWLRVVIENGKIVSCRFDEIFADNQEDIVCPELKRYYRQSKYDCAYYEDPFPPGWDRHAFLVGFRTQMDNLNAKVVATQDMLDLTGLPHTVGINLGPIWDKPLNEKAELNMKERPVYPAWKNYLRMAKIVLAEMKKDHVLQSFIRSGVGLEG
>NZ_CP017039.1|WP_069177848.1|601950_602946_+|hypothetical-protein
MIDKTRWLGLGPWHEDNESELIDWTVQPQYQGILKGNYYHAELRYSGRWGDSGHLGELDVVTDPEDRVIFAEFNETTMRNYYVRHFQNVSKRRTEFQFFQDFHDKRRSVSYGKVLANGFKYVEDQILAAKNLNCDFDLLTGASFSMKNMIGLTKKIGEEIQDSTHEKQDYYGYAENFGYGLTGWLQVVLEKGRIVKCFYDEIFADHTDEILYDELKQFYRQSKYYSTTYEDPFPSGWDRHAWLVCFKDLSDQLNKKVCETQDMLDITGLPCVDGPDLGVVWDRPHKDDIPLISNNDATTRSVTRPRSPVWNNYLRMAKILLDEINKDKKFQ
>NZ_CP017039.1|WP_022849273.1|600975_601950_+|ATP-binding-cassette-domain-containing-protein
MTDEILIIRNLKKYFETRLGTLHAVDDVSFKIKRGETLGLVGESGCGKSTIGRLILGLQTATSGEILFNGKDVCKMSKQELKNVRKDLQIIFQDPFSSLNPRMSVSEIIREPLQIHNLVRGRAESDKEVFRLMNIVGLSQRLLNAYPHELDGGRRQRVGIARALALQPQFIVCDEPVSSLDVSIQAQVLNLLKDLQKELGLTYLFITHDLSVVKFFSDNIAVMYLGQLVETAKSDELFQQPLHPYSQALLSAIPVPDCHKKMRRVKLIGEIQSPVNPLPGCRFAKRCLYQDEACTMQDLELKPYGDAHYCACCKVGQINIAKEI
>NZ_CP017039.1|WP_069177847.1|599972_600983_+|ABC-transporter-ATP-binding-protein
MNQQVLLDIKNLCVEYRSDEETVFAVNSLNLRLNRGESLGLVGETGAGKTTTALSILNLVCDPPGKIVNGEIFFEGADLLKMKMNEIRDIRVQKISIIFQDPMTSLNPVYSVGDQIAEVIILHEKCNKHEARQKAGDMLERVGIPRERYDEYPHQFSGGMKQRVVIAMSIACAPELILADEPTTALDVTIQAQVLELMSDLKEKMNTSLLLITHDLGVVAQICDRVAIMYAGKIVENGTIEEVFDHPRHPYTIGLFGSIPTLDDCVEKLKPIKGETPDPTNLPPGCSFHPRCQYANECCSKDRPQKTILNGTHMVRCLAYEGKFEADGLAEELRYD
>NZ_CP017039.1|WP_029737670.1|599077_599959_+|ABC-transporter-permease
MIIHPQIKSRKKSQLSAVWRRLIKNRMAVVGLVILCLIILAALFAGVLFDYEKMVIQQSASLRLKGPSTEHWFGTDEVGRDILARIIYGARVSLPVAFATIAIASVIGGLLGAIAGYGSKRVDNIIMRIMDIFLAIPSVLLSITLVSALGASMGNLLLAISISNIPPFARIVRSSVLTIRNEEYIEAAQAIGGGDIRIITKHIIPNCMAPLIVQATLSVAGSILAISSLSFLGLGIQPPTPEWGSMLSSGRQYIRYAWWVCAFPGIAIMLIILSLNLLGDGLRDALDPKLKNR
>NZ_CP017039.1|WP_069177846.1|598137_599073_+|ABC-transporter-permease
MCRFITRRLILLIPVLLGVSFIVFSILSLTPGDPVQIRLGDNYTPESYASMKHEMGLDQPYILRYLSYIWNVIRGDFGKSYTTNNPVVSEIMARFPNTLLLSFCAMLFAIVIGVSLGVISATRQYSFLDSTSMVAALIGVSMPNFWLGLMLILVFAARLGWFPSAGFKTFRSLVLPALTLSANSLAIITRMTRSSMLETVRMDYIRTARAKGVNENTVILKHALRNALMPVVTTIGLQFGFSIGGAVLVETVYSWPGLGRLLVEAIKYKDTPLVTAIVIILATMFTVINLFVDVLYAALDPRIRAQYKGKG
>NZ_CP017039.1|WP_069177845.1|596538_598053_+|hypothetical-protein
MKRKLLVVVLVVVALLTVSALVFGAPSPNKDDGTLIVAVPDAPSYMDPQVQASIGTYRVTTQIFDRLVSMDTEMNLVPGLAESWDVEDEKTTVFHLRKGVKFHNGEEMTSEDVKYSLERCIASSGVNYNYLIIDNIEIIDNYTIKIITKEPFNALLYRLTLDAASIVSKKAATSSEEFNKHPVGAGPFKFVSWEMGGDVVLEANEDYYKGAPKIKKLIFRQIPEALNRAIGLETAEIDLAYDLAITDLDMLMENEMITVETVPSTTVWYLGFNVQKEPLDNVLVRQAVAYGLNTQDVIDIVYNGVASPAHNTMLPPRLFGYAPDTVEYPYSIEKAKEVLAEAGYPDGFATTLWCSDSQVMRDIAVVVQEQLRVIGISAEIKTVEAGNYYAATGAGEQDLFILSKTSIDPDSMLRAMYHTEAFGLSGNRSFWATPETDEKINQASITLEPQKAQELYREIQTIVAQQLPLIPLMIENLNAGMQSNVKGFELYPGKSHYIYGTWFE
>NZ_CP017039.1|WP_069177844.1|595563_596406_+|hypothetical-protein
MERHSKREKTVNILDKLYWTVQPPIGVILGDYFREENWFAPHFAGDQGYHGILEVVRDQERIVWIRFNEINNPTYYIKKYQGVSKRLSDYCFFQATKERTEKTGVVLTNGLVHLENQMIAENRLTGSFDVLCGASNSIKRSMLPLAEKISGRLLSKADGKYYGIAESLGGGVTGHLQVVINNGSIIQCFYDEIFADREEEIDDPELKPYYRQSKYHCLDYVSTLGIGFNIFSEMISARVQATQNLLDLDGLPFSNEIGCAVEWDNYIRLATKLNVCINQI
>NZ_CP017039.1|WP_069177852.1|607782_608073_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTETAEGKKRLRKVAKMCVNYGSRVQNSVFECIIDNAQAVKLKHELSKIIDVNTDSLRFYYLGNKYETKIEHIGIEKGIHVDRPLIF
>NZ_CP017039.1|WP_069177853.1|608084_609113_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKVMNVLYVSSEGGYLSLDGENVVIIDGDKEIGRVPLHNLEEIVSFGYRGASPALMGACAERNISLCFMTPQGRFLARIIGKTKGNVLLRRKQHQVADSAESLEIAKNCILGKIYNARWVLERVTRDHPMQVDVEALKKASAFLKAAMTRVMAAESKEQLRGEEGEAARVYFGIFDELILQQKKDFVFLGRSRRPPMDKVNALLSFCYSLLTSSVASALETVGLDPYVGMMHTDRPGRASLALDLMEELRPAIADRFVLALVNKRIVNGKDFIQKENGAVLLKDDSRRTVLAEWQNRKKDTLEHPFLKEKMEWGLVPFAQAMLLSRHLRGDLDAYPPFLWK
>NZ_CP017039.1|WP_069177854.1|609109_609778_-|CRISPR-associated-protein-Cas4
MEYAEEDFLMISGIRHFLFCRRRWALVHLEQLWAENYHTILGEIMHENAHDPYLAEKRNDTIVIRALPVSSKRLGLSGECDVVEFQKSPDGIRLHGHRGTYSIYPVEYKKGGPKVEKEDVMQLIAQSLCLEEMFSARVSEGALFYGSTRRRERIPITDELRMEAENVIAEMHQYFSRGYTPKVKTHKRCRGCSLIDLCMPELERASSVNKFIHDKLQEEVAS
>NZ_CP017039.1|WP_069177855.1|609808_611986_-|CRISPR-associated-endonuclease-Cas3''
MEYFAHSPKGDIPAQTYRDHVENVHRLANRFAQEAERFATQSKGLLTENTDAGASLHDFGKLLEENQEVLRGDKKSARLPIHHEDAGVAYLLNKEANYAAISVFAHHRGLPDFQKEFNREGNAFRDAQPEVIERTNKELDRIAEIHHQIYDTTITYPTESYEGDQNLFIRLLLSCLTDADHTNTAENYGQYPTLDEMPELQAEERLKQLDAYVKSLETSDPRSHLRSQMYENCRNSVQASQFVSCDSPVGSGKTTAVMAHLLKQASSRGLRRIFVVLPFTTIITQSVDVYRRALTLPGEDPEKVVAELHSRADFEDKETRYLTSLWRSPIIVTTAVAFYETLASNYPSTLRRLHELPGSAFFIDESHASLPLTLLPLAWKWMVKLAEEWSCYWVLGSGSLVEFWKLNRLTEYHPIIPELVPSQLRNQLMQYEKDRITFQRNDQPLSLDEFIDWTQSFPGPRLVIVNTIKCAAVVADELCSRYGRDHIEHLSTALTAADRAITVRRIKARLEDEKDTDWTLVATSCVEAGVDFSFRTGFRQTASLLSLIQASGRVNRHGRYPNAEIWDFTFQDNDSFPNHKGFELSAQILKKYFVNGKEISPALSTKAIEDQITENDSVLRTVHYFLDKEKEMAFETVAKEFNVIEDHTVVAIFDPELIRNVQFGKGNWRLIQNHSFNIRKGKESDMNLKMIAPDIYQWMLDYDDFLGYMKGVLWKEKTKTSFLDF
>NZ_CP017039.1|WP_069177856.1|611988_612849_-|type-I-CRISPR-associated-protein-Cas7
MNELIKRATGFLVIEVVNSNPNGDPDRESDPRQRPNGCGEISPVSFKRKLRDLIDDHSAPFFNTLPEKFHNQDRYYILEHRGRDRASITAEMKDGGSFLQSTFVKKYWDARVFGNTFLEKEGDKGFIKTGVVQFGMGVSISPISVQRQTNTNKAGVQEGKNAGMAPLAYRFVEHGVYCMPFYVNPNFAYHSGCTEDDIELLKLLIPHAYEMNRSAIRPDIRIRHAWYMEHKNILGSCPEYLLIEALTPIRRDHKDDPSTCWEDYEDRTSLPENLAVRLASVVDLMG
>NZ_CP017039.1|WP_069177857.1|612886_614959_-|hypothetical-protein
MINELYPLSVTMKKHNIIAPSYHRKYKPIPKITLKTPCIQFILSSGKITQIRSIPAELGKGLRKYGTNNGTYPFLNLAPLYRINDPESKKTIGSLNAETLTPELIGRLRSWCVPENDNWVRGLIEKYRVSLINVTKEIHEMLSCENSFEPIEILISETDLISDSKVFRAALESALFEKLEAKIDIDLALHVLFQIEGDHKSKKEAPENLSVAFDCERLIEAGIPAVSEQFVESFNQKLMQAESGNRVTAGRNSVDAFGLAFSPFTEIMPSVRLAGGFDATLRTMFHAHHCQYRYGKIDDGSYPISPEMRIDLQTALNWISRAEHKEETWINLDKDIILFAYPHTLPKIKVSFTKMFKAALDEQASFETEAERFITNLKQTHVPGADSNADRIQFFILRKIDRARTKIVYSKVSNAPEMEKLSEAWTLGCQNLPQIARLRPRTLFPARVPSILNRVWKLDGTIVTDKFRPVPEYHGVELLLDTGIPTDQDLHMAVQGSINLIPYIGIRFFKKNDNAKKPADEDKAIYKVSDQLSLFGLLLYRIGIRKENYMEDFPYLYGQLLKISDELHALYCRVVRNGDLPPQLAGSSIYPSAVETPIRTLNVLAQRMNPYITWAKTYQYKNVTAEGSESWKAKWLISLYEKNMTKLYTVWNPETRFNDAEKAQLFIGFLAAFPKRESTTDSEPAEEVTE
>NZ_CP017039.1|WP_083222007.1|614951_615626_-|CRISPR-associated-protein-Cas5
MNYKGYSVSFEIAGPTAMWTRPDCGDSPCSYPAPTYSAAKALFEGILWGPAIQIIPRKVELCSPPQFHSYVTNYGGPLRSPDAFTKGNNYQLYATVLLDVCYRLYADVVPNPGKSKMPANALDWDRRTTSPGHAYQEIFNRRLKRGQSFRTLCLGWSEFTASYFGPFRDNTRVHTELPDIPIPSMLREVFSDGYESEFNAIYDTNIFIRNGVLTYPERKETVHD
>NZ_CP017039.1|WP_069177858.1|615896_616505_+|hypothetical-protein
MKKIVVVLLLLVSVLSLTAGAFAQEFYVYENPDDSEETIKIPVDQAHVIGTIRFCVEEAQRLPAEIDGAICDGDDDAYNSKMAELASYIAQANSAMADTKMPNTLNLWRVYSILKEKNCGVGAAATSHADWAREELDRVGQRIGSIEFDNCPYGDREVWRAGTFFKWNPATRKWERQYFDGIFEVVGCSRSGHLRYDLVERR
>NZ_CP017039.1|WP_069177859.1|616682_618905_+|hypothetical-protein
MHSSRRILIILYLILCLAILYAVNEDIFKFSDTYFINHKFDPSIYQKSDYLLQPRLTLRKGSYWVAFQVNANGTGNGYYIVNQTGEVLVRDEFRPEIHTEIFQLKIDKPSEQVRFGISFDPAGERLDVLELFVTSDFVISRDSILRHFVTTLFLTTIFLLIGWRIFSPASWFGRLGQLSSPVNERILIVLLGLSAITSFPFFYNKFYLQTDDYMFHLLRIEGIKVGLENGIFPVRVNPYFLHGFGYGDGLFYPSLTLVFPAVLRILGFDPTTVFKIFVILLNFLSIGCFYLVTWKISKSRYSGLMGAIFYAFASYRLIDILFRCGFGEAQSFLFTPVIILGLYEIFSGRPEKWYIFAAGFLGLACTHLLSLVLAICFVGVFCLFRIRRILSDRSVLMALVKSVLLVLGLSAFFFLPMAELVLTSASKANLLVSTSLDLENFMHGIIPGSHLLTPIPSWYPVVDPNLGLPFIILPFAFFMVKKSDPRPMKRLASLCLIAGCVAAFISTEWFPWGLAAWIGNRLQFAWRVLLIAVPLLSMAGGLISESIFDRNQKKLAILGLAALSMVSTAPMFFNATRLRLETRYPLHLNSVDIIGGEYMPVGSDLDFILDNGDTVLSNDPELTILKHDRRPLYFSFEFETTSSPENGLQFEIPLLFYTGYVAEFEAPGAAPVELKPRLGEHGFVAVDIPNVAKGRVTAFYRTTLVQRLGDFITILTLAGCIGFGIRRWRMKRNGLNAVST
>NZ_CP017039.1|WP_069177860.1|619032_619962_+|phosphatase-PAP2-family-protein
MSLDESVLMIFQSLRIPALTGVFLFLTEFGAETIQLPLIAYLYWCGKKRSAILIGISFFSGMIVNQLLKITFCVQRPFLRFENLAAVAEALPGASGFSFPSGHTAGAISVYGMIAALTEKRWLKIVMVSLIVAVGISRLYLGVHTPTDVLAAIIVGALVLIAVCVASRALAADPALKNRFLLFGFALLLVGALYALMKPYPEGTGAFLRSDVMKTIGAALGGLIGFMIEETKLRFEAPKSWIGKILVFIPGIALTMALRVYLKAPLNAAFGELVGSLVRYILVTFWITALYPVLFDWALRRAKQTVPEA

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Crispr_ID: NZ_CP017039_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017039_2

2680094-2680172

Orphan

Consensus_repeat	Method
AAATAAAAAAGAAGACGTTGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017039_2

>merge|NZ_CP017039|2|2680094-2680172|CRISPRCasFinder
AAATAAAAAAGAAGACGTTGGCGCCCCTACGTCGCTTCGCACCTGGGACGCCGTTAAAACAAAAAAGAAGACGTTGGCG

>NZ_CP017039|2|3|2680094-2680172|CRISPRCasFinder
AAATAAAAAAGAAGACGTTGGCG	CCCCTACGTCGCTTCGCACCTGGGACGCCGTTA
AAACAAAAAAGAAGACGTTGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017039.1\|WP_028456811.1\|2675791_2676670_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP017039.1\|WP_069179096.1\|2679023_2679263_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_022848740.1\|2673220_2673703_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180850
NZ_CP017039.1\|WP_083222200.1\|2679612_2679981_+\|DUF488-family-protein	unknown	unknown	gnl\|CDD\|225730
NZ_CP017039.1\|WP_069179445.1\|2676743_2678015_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP017039.1\|WP_022848737.1\|2671548_2672145_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|376602
NZ_CP017039.1\|WP_029737727.1\|2694173_2695067_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381318
NZ_CP017039.1\|WP_069179102.1\|2691619_2693146_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP017039.1\|WP_069179094.1\|2673856_2674768_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_028456810.1\|2674931_2675792_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP017039.1\|WP_069179101.1\|2690470_2691523_+\|galactose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380481
NZ_CP017039.1\|WP_069179095.1\|2678238_2678868_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_022848910.1\|2695102_2695744_-\|lipolytic-enzyme,-G-D-S-L	unknown	unknown	gnl\|CDD\|238877
NZ_CP017039.1\|WP_083222201.1\|2695773_2696637_-\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|213987
NZ_CP017039.1\|WP_022849237.1\|2689591_2690437_+\|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|376459
NZ_CP017039.1\|WP_022848739.1\|2672464_2673193_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP017039.1\|WP_069179103.1\|2697635_2699216_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_069179099.1\|2687646_2688417_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP017039.1\|WP_069179098.1\|2685868_2687428_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_069179100.1\|2688635_2689580_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|223598

Protein	Function_ID	Function_description	E-value
NZ_CP017039.1\|WP_028456811.1\|2675791_2676670_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.15125e-63
NZ_CP017039.1\|WP_022848740.1\|2673220_2673703_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|180850	PRK07116, PRK07116, flavodoxin; Provisional.	2.63856e-82
NZ_CP017039.1\|WP_083222200.1\|2679612_2679981_+\|DUF488-family-protein	gnl\|CDD\|225730	COG3189, COG3189, Uncharacterized conserved protein [Function unknown].	2.55022e-40
NZ_CP017039.1\|WP_069179445.1\|2676743_2678015_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	3.93491e-22
NZ_CP017039.1\|WP_022848737.1\|2671548_2672145_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|376602	pfam01725, Ham1p_like, Ham1 family. This family consists of the HAM1 protein and hypothetical archaeal bacterial and C. elegans proteins. HAM1 controls 6-N-hydroxylaminopurine (HAP) sensitivity and mutagenesis in S. cerevisiae. The HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions.	1.96657e-77
NZ_CP017039.1\|WP_029737727.1\|2694173_2695067_+\|aldo/keto-reductase	gnl\|CDD\|381318	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins. Bacillus subtilis YcsN and Escherichia coli YdhF are prototypes of this family. They are uncharacterized aldo/keto reductase family oxidoreductases.	9.13541e-151
NZ_CP017039.1\|WP_069179100.1\|2688635_2689580_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|223598	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism].	2.87839e-53
NZ_CP017039.1\|WP_069179101.1\|2690470_2691523_+\|galactose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380481	cd01539, PBP1_GGBP, periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	8.96798e-118
NZ_CP017039.1\|WP_028456810.1\|2674931_2675792_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.48252e-69
NZ_CP017039.1\|WP_069179102.1\|2691619_2693146_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP017039.1\|WP_022849237.1\|2689591_2690437_+\|class-II-fructose-bisphosphate-aldolase	gnl\|CDD\|376459	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II.	5.23656e-109
NZ_CP017039.1\|WP_022848739.1\|2672464_2673193_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	1.6655e-22
NZ_CP017039.1\|WP_069179099.1\|2687646_2688417_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.60395e-61
NZ_CP017039.1\|WP_083222201.1\|2695773_2696637_-\|PHP-domain-containing-protein	gnl\|CDD\|213987	cd07432, PHP_HisPPase, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase. HisPPase catalyzes the eighth step of histidine biosynthesis, in which L-histidinol phosphate undergoes dephosphorylation to produce histidinol. HisPPase can be classified into two types: the bifunctional HisPPase found in proteobacteria that belongs to the DDDD superfamily and the monofunctional Bacillus subtilis type that is a member of the PHP family. The PHP (also called histidinol phosphatase-2/HIS2) domain is associated with several types of DNA polymerases, such as PolIIIA and family X DNA polymerases, stand alone histidinol phosphate phosphatases (HisPPases), and a number of uncharacterized protein families. The PHP domain has four conserved sequence motifs and contains an invariant histidine that is involved in metal ion coordination. The PHP domain of HisPPase is structurally homologous to other members of the PHP family that have a distorted (beta/alpha)7 barrel fold with a trinuclear metal site on the C-terminal side of the barrel.	1.56063e-30
NZ_CP017039.1\|WP_022848910.1\|2695102_2695744_-\|lipolytic-enzyme,-G-D-S-L	gnl\|CDD\|238877	cd01839, SGNH_arylesterase_like, SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	3.86654e-57

>NZ_CP017039.1|WP_083222200.1|2679612_2679981_+|DUF488-family-protein
MGHTLKIIRVYELKEGVPGYRVLVDRLWPRGLRKETLRLDRWAKEIAPSPDLRKWFGHLEERLEAFKALYRAELDGSTDARAFARDVAEILEKQDVLLLYAAKSPTCNHAAILREWLAEQEE
>NZ_CP017039.1|WP_069179096.1|2679023_2679263_-|hypothetical-protein
MKITKSVSKNSLTYYLSKSVRINGKSTTITIERIGGAEEVRQRAGEMDSELWLKRYVRERTAQEKAENVESILRNLLTN
>NZ_CP017039.1|WP_069179095.1|2678238_2678868_-|hypothetical-protein
MRRRFCVLSLLFVLCLFAVSATCADEGLVQELSSDKLFFDNFDEGIRPEWTAVEGKWRMVNGALQPVEGAAPRVELDALDFGDGIIEFKTGNIDTVWGKRNELQIGVKRQDGSEAGYWFKYYDEKLVCYLMTESGETLEFYQEQVKLLKSYEYNMRIEIKKDIIKMLVNGEQVCVFSDDAFNRGFISIVMKPSDADNPYPWIDDFTIYE
>NZ_CP017039.1|WP_069179445.1|2676743_2678015_-|carbohydrate-ABC-transporter-substrate-binding-protein
MVLLSLTGCGSKDSTTESSGGSEPASSSGKVSITVFNSKMEIQSQMEEMAKKYSEEKGVDIEVYYSSDTVAQHLATKYASNDPYTVAMVDAKDIYALAADHAIDLSDQDWPKDTTQEITIDGKVYGFPFCIEARGVIYNADAIKNITGEDFDLTSVSTLDGFSELIEALKAGGMESPTGVMKEDWSLAGHYLTEVYEEQPDPAAFIQGLHDGSVELISDPRFLSLMDTFDVLKENNYAKGSAISAEREVTEQKLAEGEIAFMFGGNWDWSVINAYNYSENMGVMPVPQNTDDDYNTKLVGGGSKYFYIDASEAISDEQRAAAKDFLNWLVYDEAGQDFIVNDCALVPAYSNITLPVSDPLGKSVKSFADSDRLVPNYNYLPDDHYSIVGAAFQKYLADQTDLAGFAEEIQNYWKGVTLSGASQ
>NZ_CP017039.1|WP_028456811.1|2675791_2676670_-|sugar-ABC-transporter-permease
MKRNTLMYKTKQFLMFAGPAGFLFFGTVIVPFVYGLYLTFTSWDGISRVKPFVGLENYIAAFRDGVYWQALGRTVVYSFFSVILINIVAFLLAYMVTSGIRGQNFFRAGFFVPNLIGGIVLGYVWKFVFNRAFVALGTAIAGGTVGSLLATTNGAMFCLILVSTWQYAGYMMLIYVAGFMSVASDLKEAAMIDGCTPFQAMRNVIVPLMRASFVQCLFLSITRCFVVYDVNLSLTKGEPFNSSVLAAMHVYNQAFVYKNYGLGQAEALILFVICAIVGITQVQIGKRNEVEA
>NZ_CP017039.1|WP_028456810.1|2674931_2675792_-|carbohydrate-ABC-transporter-permease
MTDSEKALRRKHITHGIMIAILIIVFLMFIFPFFLVIINVFKTKGDINSNPLALIGAHGFTLLNFPNAMRRMNFWHVFGNSLTITISATILTILVSAMAAFVISRNKWKATTILFALMIASMIIPFQVLMVPIVSVYGGIFNVLNSRLTLILMHIGFSVSMATFMFERAIRTNIPLGLEEAAEIDGCTRWQTFWRIVFPLLKPTIATVAIINAMAFWNDYLLPSLVLGRKELYTLPIATQAFYGTYSTDIGLVMAALLLAMLPILVLYVFLQKYIVAGVTSGAVKG
>NZ_CP017039.1|WP_069179094.1|2673856_2674768_-|hypothetical-protein
MYKRIILIVCLALAFSTAGYAFAQELGGGGLMFEPPFLTAQVADQAVFRLENFELGEAGSVSFDLHIGAGAAEKSCALPVMNGFIDADSAADAVDCDELAYRAEWDRSSIPANAEVIRVSLVSRMTGFRSIAPMPDEPVSAPVGWGAAYHSPLMISFYGEDGAAKTDLTMEGNLALATNIRTKSSMSFKIANLSTESCKTRFDSIVEIEPYAERMNEDYRLTGKYVNGEFADFGAGGSESPTILTSRQEIDSCADGGEAPELQGITLDFSVPTVQVEYLTEAGEKGIWQGAILNFFAIDFLGL
>NZ_CP017039.1|WP_022848740.1|2673220_2673703_+|NAD(P)H-dependent-oxidoreductase
MKKILVAYFSASGVTRAAAETLAKAAEADLLEIRPETPYTDADLNWNDPKSRSTVEMKDRAFRPKIVPIDAQIAEYDVVFLGFPIWWYVAPTIINTFLESYDFSGKRIILFATSGGSGFGRTVVGLRPSVSSAASIEPGRILNRRATVDELREWIKSLKL
>NZ_CP017039.1|WP_022848739.1|2672464_2673193_+|HAD-family-hydrolase
MTKIKAILFDLDGTLLPVDQEEFTKAYFGLVAAKAAPLGYEPKRLVDAVWAGTIAMVKNDGKESNETVFWKKFSSIFSEDARKDREVFDDFYRVEFNELRKICRPDPDAAAALKRIKALGFRVALATNPLFPSVATENRIRWAGLEPGDFEFYTAYETIGLSKPNPKYYLEVANRIGLEPNECAMVGNDAFEDGIAGTVGMRVFLLTDCLINKDNRDISAIPHGGFERMMEWAERLNQPAAE
>NZ_CP017039.1|WP_022848737.1|2671548_2672145_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MKFIIGTNNAHKVEEIRAILPEIEWVTPEDLGIEAEIDETGETFAENALLKAKAFAALAGIPAVADDSGLETDALDGRPGVYSHRFCPWAGADDRDRRRYLIERLSAFPRPWKGRFVSCAAFYDPVADRTETVLGTVEGEISDADRGENGFGYDAIFYVPSLGKTMAEMSEAEKNAISHRGASFRALRARMIEMGILR
>NZ_CP017039.1|WP_069179098.1|2685868_2687428_+|hypothetical-protein
MHGQKAVCLVLIITAFLLVPIPSQVFAISEFNWELRAYRDFSVACAFSTSDANPPGNDVLRIHCGDRIASEFALTPQCDDPTFLACDGYFLRGFSLQSDPHEDIWIGSSSFMGLREIEIRPLNCEPNAICDQIPIIEFSVRSQSDAQSVFQITIDNEDFTCAAPVCQIALAPPSSKKNSWITASLIDPEGTSGKLHHIFFRFKRLMRSPDLFFLEWLWCDRFGDSLYGAENWYVVPSPLELGRLDGTVLAPSQTEDDIYTEYQLYGLCAEFIRNGTVRARDCPGFGLLDGKTPNGCGIDACREQVILRQNDANQQITRAGTAFRIPPGLLKNVLLGESQFTKFSGQPGEIGAGHLTQLGVDTLLRWSPSTFASACAEVYPLLPELCAAGYEAMDEPHRRLLRGVIVREARADEGIMLTARILFACERQVGWIIIDLRNRPLQHITDYQTLWKLSVATYHAGAECTRQAITRTVKQQYAIQWTNIRRNYVGKCRSAPAYVDIVFSPDYPRYPPLMSSADH
>NZ_CP017039.1|WP_069179099.1|2687646_2688417_-|GntR-family-transcriptional-regulator
MKTENDSLKDKDQLNRDIPIPLYYQLKSILFEKIQNKLYREGDIIPTEAELQETYQISRSTVRQAIAELVQEGWLDRRTSKGTFVTYPKSEISHIHPFEPFYQQVKQLGKTSKTELIHLSIIPGSSELSGSMGLSAGTKIISMFRRRFADDEPLVTIHNFLPFEYCSFILSHDFRFESLYETLKNNPMTRIEQTKTIVSAENASGEDALLLQIAVDSPILCFNTIARNEAGIVIDYAFSHYRGDRNRFEIDVRPEK
>NZ_CP017039.1|WP_069179100.1|2688635_2689580_+|carbohydrate-kinase-family-protein
MKFLCIGMMVCDYIITQIPMEIMSINGAVIRDLKITGGGDALNVAVALSQLGEQVAIAGRIADDLPGKYLLEYCEGNNVGVNGVVTDKNFKTATTFAIVDPTGERHFLIENKIYETYTDKIAPLSAIAGNDIIYIGSALTFPQMDQGGIAKIFSHAKNLGKITAMDAAIHGQTYNKNLLRSLRPALETTDIFLPSLAEMIVLTNQRNPYKIADCFKEFGIKTLVIKLGKDGCYVTDFNMEKIIQAVPVPHVIDTTGAGDTFVAGFLCGWAHGYNPFDCAKIGNIAASYSIQQIGSGIGLPTFTDLAKSLISESY
>NZ_CP017039.1|WP_022849237.1|2689591_2690437_+|class-II-fructose-bisphosphate-aldolase
MKFAPMKELLYFAEKKGIAYGAFVTVSYETALAAIEAGSELNIPVIFITGTDCCDLMGGFEATVETVKRAAARATIPIVLHLDHAKTFEDCAKAINAGYSSVMIDGSALPFAENVELTRKVVELAHPLSITVEGELGRLVGEEGDLLVKGPEAAQTDPDEAREFVAKTEVDCLAVSIGTQHGQYTAEPNLNIRRLKAIKEKVNVPLVLHGGSGTPIDQIQDSIRNGIRKINVATDVLIAVANSFEEMKRNPDFKYNTAMFVNSKEAAKRLILLKMKQFSMH
>NZ_CP017039.1|WP_069179101.1|2690470_2691523_+|galactose-ABC-transporter-substrate-binding-protein
MKRSLFFVAAFAVLIGMAAAPVHADKDINATVIWRAFDDQFQSGFRIIMEHEAEKIDGITLEMQDGENDVSKTTNKLEAALTKGADAIAVCAPDRLCTAELMKKADAENVPVVFFNMEPMAETMEAYDSIWYVGAQAKESGVMCAQALINYWNENKGIADKNGDNILQLVILQGEIGQQDVILRTEAYEETLTEQGIDYEIIAIDTANWDKAQALDKMNAWITAFGIDGVEGVLANNDSMAMGAVQAALNNGYNKGDPNKFIPIVGIDATIEALQAMKAGSLLGTVLNDRTSQSIAVVNILKAIGNGETIIDAETVGVSSKIEGNYIWIPYEIVNQDNLEETLELMLEFN
>NZ_CP017039.1|WP_069179102.1|2691619_2693146_+|sugar-ABC-transporter-ATP-binding-protein
MSVNRLEIRGISKSFPGVRALDNIDLTIKPGVVHAIVGENGAGKSTLMKCLFGIYKPDKGKILIDGSEAIIDSPGKALQLGIAMIHQELNPIPFRNIMDNIWVGRFPTSGVVVDEVKMRQKTKALFESLDFDINPDTLARKLSISQLQAVEIAKAISYDAKIIIMDEPTSSLTDTETGHLFKLIRKLKHENRSIIYISHKLEEIFEIADEITVLRDGMNVGVWKAKEIQIEEVIKKMVGRTMQERFPARIRTTKQDLLLEVDSLSSADRNSFSDISFCLYKGEILGIGGLVGAQRTELIESLFGLHKIAKGSIRLNGKEIKNRNPEEAIQNRFALLTEDRRATGIVPMLSVEENTLTVAYKKIVKNFPGFFRPQTLKTIVKEICTKLNIRTPSLETQIRNLSGGNQQKVLIGRWLLAESKILILDEPTRGIDVGSKYEIYKIMQEFVENGASILMVSSEMPELLGMSDRILVMCAGKLTGTLNHSNASQVEVMKLATAFTLRRQEESR
>NZ_CP017039.1|WP_029737727.1|2694173_2695067_+|aldo/keto-reductase
MEKIKISNRLSLSRIVQGFWRLTDWNYTTDELIRFMHTCIDMGITTFDTAEIYGRTVCETLMGKAFKKDPTLIKRIELVTKTGIFEKEISGEKIGYYNTRYSRVMQSCKESITRLGIDKIDLYLIHREDPCFNPWDTGRALEELQKEGLVLEIGVSNFDPFKFEALNAAVNGKLVTNQIEWNPICFEHFNSGMIDYLAMKKLHPMIWSPLAGGKLFDNSCQRSLNVMKKVTEIAKRHNAQIESILYAWILYHPVEAIPISGSRNVERIRRAVKGLDIKLDHAEWYELYTASGQQTLR
>NZ_CP017039.1|WP_022848910.1|2695102_2695744_-|lipolytic-enzyme,-G-D-S-L
MNKIRVVCYGDSNTYGADPRTGGRFDDDVRWTTRLGALLGDRYEVRPEGLSGRTTVFDDPLCEGLSGLATLRPVLSTNSPIDLLILMLGTNDCKARFAATGYNIAEGLRVLLQTAKQLPVWRDGPRILVLAPMKIDPRIETVPTVYGHMGPGCAEKSAAMVPWMLRFAAEEGCDALDINPFVSPNELDWMHISELSQLPLAKAVAEKVRSVGL
>NZ_CP017039.1|WP_083222201.1|2695773_2696637_-|PHP-domain-containing-protein
MDANEYVNEYGDADRDADAAPDRYAPADADADLDADARSNQDAASDRYGESGSVAIYQENNKLKILVDFHVHSEFSPDSVTKLSALIERAHELNLGKLVITDHNSIQGAIRLQKRYPDFVIVGEEILTTRGEILAFFVEEEIPAGLEPAEAFRRLRDQGAFISLSHPYSFSRHGWYEDEMIRYQEYLDAIEIANGRNTKDANEKATNFAKARSLCGTAGSDAHGLFELGRMALRLAPFSTAEELRAAIRNAEVVGTPSPKWVRIASRSAVLRKKFGLYRESGDPEDR
>NZ_CP017039.1|WP_069179103.1|2697635_2699216_-|hypothetical-protein
MRSILHHPICKWLLVGAALAGIALTAFTTMARVPINSDFANHVLEGRDWIGGNFFLKDWVLTGISFLTTELPFYGLSAALLGVQPFAYVLAEAMILTVFLWFGLLLLRDRVDALTPLDALLYYGIAVVATVEKTGHFRGHTAAFAAALVIMAIAARILTDGKTSWGWATALLIVTAIGVTGDFLIVVIAVLSVVLLCGWELMNETPRFGRMRCVRVIALTSVGSGAGVGLDRLYFSVGGAVKNQILSRKNFTALDQIGINWNRFAQGVVELMNGTTRQTPITALSTLRWIAAAVLIIGMVLVVIETIYAYLKRRHQDLFAVLLALSMAVMAAVCVFTDVLVTSEFTRYISFLPVFTAILIVRRVNHRNIPQRRIGGWLSMRVGLALVAALLIAVNFPPLTFGRPDTRFDRVAAYLVENGYRFGFAHYWNASSVTVSSHDQVKIRAITVHRDSDLVPVYVEEQRWFYKPGWFSEAPYTFVLLDDWGYLDVSEDSIITLFGEPAKVDRFEGYEILVYKENLVPKLIGR

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Crispr_ID: NZ_CP017039_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017039_3

2696493-2696587

Orphan

Consensus_repeat	Method
CGTATCGGTCGGACGCGGCGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017039_3

>merge|NZ_CP017039|3|2696493-2696587|CRISPRCasFinder
CGTATCGGTCGGACGCGGCGTCCTGGTTGGAACGAGCGTCGGCGTCGAGGTCAGCGTCGGCGTCGGCTGGCGCGTATCGGTCGGGCGCGGCGTCC

>NZ_CP017039|3|4|2696493-2696587|CRISPRCasFinder
CGTATCGGTCGGACGCGGCGTCC	TGGTTGGAACGAGCGTCGGCGTCGAGGTCAGCGTCGGCGTCGGCTGGCG
CGTATCGGTCGGGCGCGGCGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017039.1\|WP_069179096.1\|2679023_2679263_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_022848917.1\|2700712_2701249_+\|flavin-reductase	unknown	unknown	gnl\|CDD\|224766
NZ_CP017039.1\|WP_083222200.1\|2679612_2679981_+\|DUF488-family-protein	unknown	unknown	gnl\|CDD\|225730
NZ_CP017039.1\|WP_069179107.1\|2704626_2705553_-\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
NZ_CP017039.1\|WP_022848916.1\|2700004_2700463_+\|DUF3021-domain-containing-protein	unknown	unknown	gnl\|CDD\|378668
NZ_CP017039.1\|WP_029737727.1\|2694173_2695067_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381318
NZ_CP017039.1\|WP_069179104.1\|2701969_2702896_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NZ_CP017039.1\|WP_069179100.1\|2688635_2689580_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|223598
NZ_CP017039.1\|WP_069179101.1\|2690470_2691523_+\|galactose-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380481
NZ_CP017039.1\|WP_022848915.1\|2699557_2699992_+\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NZ_CP017039.1\|WP_022849549.1\|2701327_2701885_+\|DUF308-domain-containing-protein	unknown	unknown	gnl\|CDD\|225786
NZ_CP017039.1\|WP_069179105.1\|2702888_2704187_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_CP017039.1\|WP_069179102.1\|2691619_2693146_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP017039.1\|WP_069179103.1\|2697635_2699216_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_022849237.1\|2689591_2690437_+\|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|376459
NZ_CP017039.1\|WP_069179106.1\|2704149_2704623_-\|aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|234859
NZ_CP017039.1\|WP_069179108.1\|2705939_2706290_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_069179099.1\|2687646_2688417_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP017039.1\|WP_069179098.1\|2685868_2687428_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017039.1\|WP_022848910.1\|2695102_2695744_-\|lipolytic-enzyme,-G-D-S-L	unknown	unknown	gnl\|CDD\|238877

Protein	Function_ID	Function_description	E-value
NZ_CP017039.1\|WP_069179105.1\|2702888_2704187_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NZ_CP017039.1\|WP_083222200.1\|2679612_2679981_+\|DUF488-family-protein	gnl\|CDD\|225730	COG3189, COG3189, Uncharacterized conserved protein [Function unknown].	2.55022e-40
NZ_CP017039.1\|WP_069179107.1\|2704626_2705553_-\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.79841e-139
NZ_CP017039.1\|WP_022848916.1\|2700004_2700463_+\|DUF3021-domain-containing-protein	gnl\|CDD\|378668	pfam11457, DUF3021, Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins.	1.31721e-24
NZ_CP017039.1\|WP_022848917.1\|2700712_2701249_+\|flavin-reductase	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	2.72587e-14
NZ_CP017039.1\|WP_069179104.1\|2701969_2702896_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	1.66483e-95
NZ_CP017039.1\|WP_069179100.1\|2688635_2689580_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|223598	COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism].	2.87839e-53
NZ_CP017039.1\|WP_029737727.1\|2694173_2695067_+\|aldo/keto-reductase	gnl\|CDD\|381318	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins. Bacillus subtilis YcsN and Escherichia coli YdhF are prototypes of this family. They are uncharacterized aldo/keto reductase family oxidoreductases.	9.13541e-151
NZ_CP017039.1\|WP_069179101.1\|2690470_2691523_+\|galactose-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380481	cd01539, PBP1_GGBP, periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	8.96798e-118
NZ_CP017039.1\|WP_022848915.1\|2699557_2699992_+\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	5.53108e-24
NZ_CP017039.1\|WP_022849549.1\|2701327_2701885_+\|DUF308-domain-containing-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	1.84364e-05
NZ_CP017039.1\|WP_069179102.1\|2691619_2693146_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP017039.1\|WP_022849237.1\|2689591_2690437_+\|class-II-fructose-bisphosphate-aldolase	gnl\|CDD\|376459	pfam01116, F_bP_aldolase, Fructose-bisphosphate aldolase class-II.	5.23656e-109
NZ_CP017039.1\|WP_069179106.1\|2704149_2704623_-\|aspartate-carbamoyltransferase-regulatory-subunit	gnl\|CDD\|234859	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed.	1.76443e-55
NZ_CP017039.1\|WP_069179099.1\|2687646_2688417_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.60395e-61
NZ_CP017039.1\|WP_022848910.1\|2695102_2695744_-\|lipolytic-enzyme,-G-D-S-L	gnl\|CDD\|238877	cd01839, SGNH_arylesterase_like, SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	3.86654e-57

>NZ_CP017039.1|WP_022848910.1|2695102_2695744_-|lipolytic-enzyme,-G-D-S-L
MNKIRVVCYGDSNTYGADPRTGGRFDDDVRWTTRLGALLGDRYEVRPEGLSGRTTVFDDPLCEGLSGLATLRPVLSTNSPIDLLILMLGTNDCKARFAATGYNIAEGLRVLLQTAKQLPVWRDGPRILVLAPMKIDPRIETVPTVYGHMGPGCAEKSAAMVPWMLRFAAEEGCDALDINPFVSPNELDWMHISELSQLPLAKAVAEKVRSVGL
>NZ_CP017039.1|WP_029737727.1|2694173_2695067_+|aldo/keto-reductase
MEKIKISNRLSLSRIVQGFWRLTDWNYTTDELIRFMHTCIDMGITTFDTAEIYGRTVCETLMGKAFKKDPTLIKRIELVTKTGIFEKEISGEKIGYYNTRYSRVMQSCKESITRLGIDKIDLYLIHREDPCFNPWDTGRALEELQKEGLVLEIGVSNFDPFKFEALNAAVNGKLVTNQIEWNPICFEHFNSGMIDYLAMKKLHPMIWSPLAGGKLFDNSCQRSLNVMKKVTEIAKRHNAQIESILYAWILYHPVEAIPISGSRNVERIRRAVKGLDIKLDHAEWYELYTASGQQTLR
>NZ_CP017039.1|WP_069179102.1|2691619_2693146_+|sugar-ABC-transporter-ATP-binding-protein
MSVNRLEIRGISKSFPGVRALDNIDLTIKPGVVHAIVGENGAGKSTLMKCLFGIYKPDKGKILIDGSEAIIDSPGKALQLGIAMIHQELNPIPFRNIMDNIWVGRFPTSGVVVDEVKMRQKTKALFESLDFDINPDTLARKLSISQLQAVEIAKAISYDAKIIIMDEPTSSLTDTETGHLFKLIRKLKHENRSIIYISHKLEEIFEIADEITVLRDGMNVGVWKAKEIQIEEVIKKMVGRTMQERFPARIRTTKQDLLLEVDSLSSADRNSFSDISFCLYKGEILGIGGLVGAQRTELIESLFGLHKIAKGSIRLNGKEIKNRNPEEAIQNRFALLTEDRRATGIVPMLSVEENTLTVAYKKIVKNFPGFFRPQTLKTIVKEICTKLNIRTPSLETQIRNLSGGNQQKVLIGRWLLAESKILILDEPTRGIDVGSKYEIYKIMQEFVENGASILMVSSEMPELLGMSDRILVMCAGKLTGTLNHSNASQVEVMKLATAFTLRRQEESR
>NZ_CP017039.1|WP_069179101.1|2690470_2691523_+|galactose-ABC-transporter-substrate-binding-protein
MKRSLFFVAAFAVLIGMAAAPVHADKDINATVIWRAFDDQFQSGFRIIMEHEAEKIDGITLEMQDGENDVSKTTNKLEAALTKGADAIAVCAPDRLCTAELMKKADAENVPVVFFNMEPMAETMEAYDSIWYVGAQAKESGVMCAQALINYWNENKGIADKNGDNILQLVILQGEIGQQDVILRTEAYEETLTEQGIDYEIIAIDTANWDKAQALDKMNAWITAFGIDGVEGVLANNDSMAMGAVQAALNNGYNKGDPNKFIPIVGIDATIEALQAMKAGSLLGTVLNDRTSQSIAVVNILKAIGNGETIIDAETVGVSSKIEGNYIWIPYEIVNQDNLEETLELMLEFN
>NZ_CP017039.1|WP_022849237.1|2689591_2690437_+|class-II-fructose-bisphosphate-aldolase
MKFAPMKELLYFAEKKGIAYGAFVTVSYETALAAIEAGSELNIPVIFITGTDCCDLMGGFEATVETVKRAAARATIPIVLHLDHAKTFEDCAKAINAGYSSVMIDGSALPFAENVELTRKVVELAHPLSITVEGELGRLVGEEGDLLVKGPEAAQTDPDEAREFVAKTEVDCLAVSIGTQHGQYTAEPNLNIRRLKAIKEKVNVPLVLHGGSGTPIDQIQDSIRNGIRKINVATDVLIAVANSFEEMKRNPDFKYNTAMFVNSKEAAKRLILLKMKQFSMH
>NZ_CP017039.1|WP_069179100.1|2688635_2689580_+|carbohydrate-kinase-family-protein
MKFLCIGMMVCDYIITQIPMEIMSINGAVIRDLKITGGGDALNVAVALSQLGEQVAIAGRIADDLPGKYLLEYCEGNNVGVNGVVTDKNFKTATTFAIVDPTGERHFLIENKIYETYTDKIAPLSAIAGNDIIYIGSALTFPQMDQGGIAKIFSHAKNLGKITAMDAAIHGQTYNKNLLRSLRPALETTDIFLPSLAEMIVLTNQRNPYKIADCFKEFGIKTLVIKLGKDGCYVTDFNMEKIIQAVPVPHVIDTTGAGDTFVAGFLCGWAHGYNPFDCAKIGNIAASYSIQQIGSGIGLPTFTDLAKSLISESY
>NZ_CP017039.1|WP_069179099.1|2687646_2688417_-|GntR-family-transcriptional-regulator
MKTENDSLKDKDQLNRDIPIPLYYQLKSILFEKIQNKLYREGDIIPTEAELQETYQISRSTVRQAIAELVQEGWLDRRTSKGTFVTYPKSEISHIHPFEPFYQQVKQLGKTSKTELIHLSIIPGSSELSGSMGLSAGTKIISMFRRRFADDEPLVTIHNFLPFEYCSFILSHDFRFESLYETLKNNPMTRIEQTKTIVSAENASGEDALLLQIAVDSPILCFNTIARNEAGIVIDYAFSHYRGDRNRFEIDVRPEK
>NZ_CP017039.1|WP_069179098.1|2685868_2687428_+|hypothetical-protein
MHGQKAVCLVLIITAFLLVPIPSQVFAISEFNWELRAYRDFSVACAFSTSDANPPGNDVLRIHCGDRIASEFALTPQCDDPTFLACDGYFLRGFSLQSDPHEDIWIGSSSFMGLREIEIRPLNCEPNAICDQIPIIEFSVRSQSDAQSVFQITIDNEDFTCAAPVCQIALAPPSSKKNSWITASLIDPEGTSGKLHHIFFRFKRLMRSPDLFFLEWLWCDRFGDSLYGAENWYVVPSPLELGRLDGTVLAPSQTEDDIYTEYQLYGLCAEFIRNGTVRARDCPGFGLLDGKTPNGCGIDACREQVILRQNDANQQITRAGTAFRIPPGLLKNVLLGESQFTKFSGQPGEIGAGHLTQLGVDTLLRWSPSTFASACAEVYPLLPELCAAGYEAMDEPHRRLLRGVIVREARADEGIMLTARILFACERQVGWIIIDLRNRPLQHITDYQTLWKLSVATYHAGAECTRQAITRTVKQQYAIQWTNIRRNYVGKCRSAPAYVDIVFSPDYPRYPPLMSSADH
>NZ_CP017039.1|WP_083222200.1|2679612_2679981_+|DUF488-family-protein
MGHTLKIIRVYELKEGVPGYRVLVDRLWPRGLRKETLRLDRWAKEIAPSPDLRKWFGHLEERLEAFKALYRAELDGSTDARAFARDVAEILEKQDVLLLYAAKSPTCNHAAILREWLAEQEE
>NZ_CP017039.1|WP_069179096.1|2679023_2679263_-|hypothetical-protein
MKITKSVSKNSLTYYLSKSVRINGKSTTITIERIGGAEEVRQRAGEMDSELWLKRYVRERTAQEKAENVESILRNLLTN
>NZ_CP017039.1|WP_069179103.1|2697635_2699216_-|hypothetical-protein
MRSILHHPICKWLLVGAALAGIALTAFTTMARVPINSDFANHVLEGRDWIGGNFFLKDWVLTGISFLTTELPFYGLSAALLGVQPFAYVLAEAMILTVFLWFGLLLLRDRVDALTPLDALLYYGIAVVATVEKTGHFRGHTAAFAAALVIMAIAARILTDGKTSWGWATALLIVTAIGVTGDFLIVVIAVLSVVLLCGWELMNETPRFGRMRCVRVIALTSVGSGAGVGLDRLYFSVGGAVKNQILSRKNFTALDQIGINWNRFAQGVVELMNGTTRQTPITALSTLRWIAAAVLIIGMVLVVIETIYAYLKRRHQDLFAVLLALSMAVMAAVCVFTDVLVTSEFTRYISFLPVFTAILIVRRVNHRNIPQRRIGGWLSMRVGLALVAALLIAVNFPPLTFGRPDTRFDRVAAYLVENGYRFGFAHYWNASSVTVSSHDQVKIRAITVHRDSDLVPVYVEEQRWFYKPGWFSEAPYTFVLLDDWGYLDVSEDSIITLFGEPAKVDRFEGYEILVYKENLVPKLIGR
>NZ_CP017039.1|WP_022848915.1|2699557_2699992_+|LytTR-family-transcriptional-regulator
MKVSVEISENYKPPRAVIYADAMTEEIRKIIDWLGQNDTLLIGQLDERLVVIKPEEVYMIRIEEGNTIIHTETGKYYSGKRLYEMIRLLGRGFMQISKQTIINLSYIKSVEAGFSGTLLLKLKNGLSDYVSRKYLPELKKYLGI
>NZ_CP017039.1|WP_022848916.1|2700004_2700463_+|DUF3021-domain-containing-protein
MNKTVKEVLSNTFQSIGYAAVIFCVVGVIFDLIFKGNLVRENYTYTRMAAGMFVIGIGFGVPTLVYKNEKIPLPVQGLIHMGIGCVVMTMTAFAVGWIPTDQGIGAILWTILGEIAIALVIWFIIYLHQKKLANEMNRRISQIEVSGPNHLR
>NZ_CP017039.1|WP_022848917.1|2700712_2701249_+|flavin-reductase
MKELTIQDVNISPIPLFADEWALVTAGTKETGFNTMTISWRHVGAIWGANQGMPTATIYIRPQRYTKEFVDREPLFTISYLSADYRKELLYLGGRSGRDEDKVANSGLTPVFGDGFTYFAEAKMVLVCRKVYAAPILESGFMDRSIIDGNYPQRDYHTMYIGEIVKILGVETSANSPK
>NZ_CP017039.1|WP_022849549.1|2701327_2701885_+|DUF308-domain-containing-protein
MKKLSFNLELVFLFVCEILIGIVLLINPIGFANLSIQIFGIALIISGIFSGIGYIRSDPRRAMHGLKLFKALAFIILGIICFTGPNWFLATFPILTVLYGIFILLVGLFRVQWAADMFRLKMERWWIAAISAVLSILLGCVIILNPFFATAVLWTVTALTLIVFGAVDLVFLLISGFGKEGEKIV
>NZ_CP017039.1|WP_069179104.1|2701969_2702896_-|orotidine-5'-phosphate-decarboxylase
MIDQLICAIREKANPTVVGLDPAMNMIPEGLKLEAFDRYGKTPKAAAESFLAFNRAIIDAVADIVPAVKPQIAMYERYGLDGLDAYLRTVAYAREKGLIVIGDVKRGDISSTAEAYAAHLGGTQVEGETYDLWKEDFITVNPYFGTDGIAPFVKAAAAMNRGLFVLVKTSNPSSSELQDLLVDGRPVYRLIADLVHRWGQDHIGAFGYSLVGAVVGATHPIQGVELRAQLPHTFFLVPGYGAQGGKGADLKGFFDKDGVGCIVNSSRGIIAAWRKDPEFADAPKLGIEFAAASRKAALAMRDDLRSAF
>NZ_CP017039.1|WP_069179105.1|2702888_2704187_-|dihydroorotase
MNLFIKNVSLPGSASDAKTNVLVENGRLRSLAAPESAGSGAETIDGSGLTVLPGLIDLHVHFRDPGFPEKETTESGCLAAARGGVTTVCPMPNTKPTIDTVETLERIERAAAAANGVHVLPLGTITRGERGEELTDYAALNAVQNECFRLMGRGLSAVSEDGKSVMNPRRMREAMIAIHANGLKIFSHAEEIGLCGGCMRLGAASERLGVIGIPAEAESIIVARDILLSEATGCPVHFCHISTASSVSLIRWAKARGIAVTAETGPHYLTLSEDDVLAENGQFKMNPPLGNETDRAALIEGLLDGTIDAIATDHAPHTAEEKNRPVSEAPFGVTGLETSFCISYTVLVKSGLTTLSRLIEMMAARPARILGLDRGELRVGAAADLTLVDLNETFVVDPAKSLSKARHSPFAGRPFTGKVKWTIIDGKVIYHD
>NZ_CP017039.1|WP_069179106.1|2704149_2704623_-|aspartate-carbamoyltransferase-regulatory-subunit
MLVVNSIERGIVIDHITAGVGAKILSCLNIDTSNHTVAFLMNADSTILGRKDVIKIKDVVDLDLSELGLLDPNATVNIIENHKVVRKIKLALPDKVVDIIHCRNPRCVTSIEANAPHIFHLVDPERRVYRCEYCDDRVSMEKDGVDELIYKKRQSSR
>NZ_CP017039.1|WP_069179107.1|2704626_2705553_-|aspartate-carbamoyltransferase
MLKGSDLLEPMDFSVDEMGEIFDLARKIIADPRSYAHALDGYLLATLFYEPSTRTRFSFEAAMLRLGGQVIGFAEANSSSAAKGESIADTLRTVACYADIAVMRHPKEGAPRIGANAADIPVINAGDGGHHHPTQTLTDLLTILQEKGTLENLTVGICGDLKFGRTVHSLIKALSRYQGIRFVLISPDELVVPDYVRDGILIRNGIPFEEVRKLTPVLSKLDILYMTRVQKERFFNEEDYVRLKDRYILDATKMESAKADMIVMHPLPRVNEIAVEIDSDPRAAYFRQAKYGMFVRMALLMKILGAEE
>NZ_CP017039.1|WP_069179108.1|2705939_2706290_-|hypothetical-protein
MSDKNQAVAFVRELVSAESCYPPLRELGEEWLAAVGTDRESDLSSKLIAALEEDVNTIDDSLSFFASEAGMRHFGKEKVKEMIVAFTEAKANGSRYCLCPACSAGAAILAHRELFG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017039_1	1.23\|607358\|34\|NZ_CP017039\|CRT,CRISPRCasFinder	607358-607391	34	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	314313-314346	7	0.794
NZ_CP017039_1	1.23\|607358\|34\|NZ_CP017039\|CRT,CRISPRCasFinder	607358-607391	34	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	66129-66162	7	0.794
NZ_CP017039_1	1.41\|607359\|34\|NZ_CP017039\|PILER-CR	607359-607392	34	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	314313-314346	7	0.794
NZ_CP017039_1	1.41\|607359\|34\|NZ_CP017039\|PILER-CR	607359-607392	34	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	66129-66162	7	0.794
NZ_CP017039_1	1.4\|606097\|33\|NZ_CP017039\|CRISPRCasFinder,CRT,PILER-CR	606097-606129	33	NZ_CP039925	Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence	136796-136828	9	0.727
NZ_CP017039_1	1.11\|606562\|34\|NZ_CP017039\|CRT,CRISPRCasFinder	606562-606595	34	NZ_CP015739	Shinella sp. HZN7 plasmid pShin-03, complete sequence	154821-154854	9	0.735
NZ_CP017039_1	1.27\|606430\|34\|NZ_CP017039\|PILER-CR	606430-606463	34	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	33830-33863	9	0.735
NZ_CP017039_1	1.29\|606563\|34\|NZ_CP017039\|PILER-CR	606563-606596	34	NZ_CP015739	Shinella sp. HZN7 plasmid pShin-03, complete sequence	154821-154854	9	0.735
NZ_CP017039_1	1.3\|606030\|35\|NZ_CP017039\|CRISPRCasFinder,CRT,PILER-CR	606030-606064	35	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	396187-396221	10	0.714

1. spacer 1.23|607358|34|NZ_CP017039|CRT,CRISPRCasFinder matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 7, identity: 0.794

gaggttgccaagcaacaaatcgaagattggaaaa	CRISPR spacer
gaggttgccaagcaacaaagcgacgatgtgcatt	Protospacer
******************* *** ***  * *

2. spacer 1.23|607358|34|NZ_CP017039|CRT,CRISPRCasFinder matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 7, identity: 0.794

gaggttgccaagcaacaaatcgaagattggaaaa	CRISPR spacer
gaggttgccaagcaacaaagcgacgatgtgcatt	Protospacer
******************* *** ***  * *

3. spacer 1.41|607359|34|NZ_CP017039|PILER-CR matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 7, identity: 0.794

gaggttgccaagcaacaaatcgaagattggaaaa	CRISPR spacer
gaggttgccaagcaacaaagcgacgatgtgcatt	Protospacer
******************* *** ***  * *

4. spacer 1.41|607359|34|NZ_CP017039|PILER-CR matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 7, identity: 0.794

gaggttgccaagcaacaaatcgaagattggaaaa	CRISPR spacer
gaggttgccaagcaacaaagcgacgatgtgcatt	Protospacer
******************* *** ***  * *

5. spacer 1.4|606097|33|NZ_CP017039|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039925 (Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence) position: , mismatch: 9, identity: 0.727

gccgccggacaggtcgatcgatacgcgcgaaac	CRISPR spacer
attcccggacaggtcgagcgatccgcgcgctgc	Protospacer
... ************* **** ******  .*

6. spacer 1.11|606562|34|NZ_CP017039|CRT,CRISPRCasFinder matches to NZ_CP015739 (Shinella sp. HZN7 plasmid pShin-03, complete sequence) position: , mismatch: 9, identity: 0.735

cgcctgcgcagaaatatccacgccaa---acaggata	CRISPR spacer
agcatgcgcagaaatatccgcgccagctttcggg---	Protospacer
 ** ***************.*****.    *.**

7. spacer 1.27|606430|34|NZ_CP017039|PILER-CR matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 9, identity: 0.735

accagccggagggtattttcacgggcatcggcga----	CRISPR spacer
accagccggcgagtattttcacgg----tggtgctttt	Protospacer
********* *.************    .**.*

8. spacer 1.29|606563|34|NZ_CP017039|PILER-CR matches to NZ_CP015739 (Shinella sp. HZN7 plasmid pShin-03, complete sequence) position: , mismatch: 9, identity: 0.735

cgcctgcgcagaaatatccacgccaa---acaggata	CRISPR spacer
agcatgcgcagaaatatccgcgccagctttcggg---	Protospacer
 ** ***************.*****.    *.**

9. spacer 1.3|606030|35|NZ_CP017039|CRISPRCasFinder,CRT,PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 10, identity: 0.714

aaatagaatacagatcaaaataaaatggatcacag	CRISPR spacer
aaatagaaatcagatcaaaataaaaataattgagt	Protospacer
********  ***************  .**.. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

133301 : 152519

Bacillus_phage(25.0%)

portal,tail,capsid,terminase,head,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069177532.1\|133301_135266_-\|tail	phage tail protein	A0A0U4B063	Bacillus_phage	1.3e-70	37.2
WP_069177533.1\|135262_135985_-	hypothetical protein	NA	NA	NA	NA
WP_069177534.1\|136004_136781_-	hypothetical protein	H6BJ44	Methylophilales_phage	2.1e-11	37.2
WP_069177535.1\|136938_137487_-	hypothetical protein	NA	NA	NA	NA
WP_069177536.1\|137490_140205_-	hypothetical protein	NA	NA	NA	NA
WP_069177537.1\|140305_140515_-	hypothetical protein	NA	NA	NA	NA
WP_069177538.1\|140768_141233_-	hypothetical protein	NA	NA	NA	NA
WP_069177539.1\|141294_141867_-	hypothetical protein	A0A0U4JWV5	Exiguobacterium_phage	2.4e-20	31.9
WP_159060101.1\|141903_142284_-	hypothetical protein	NA	NA	NA	NA
WP_069177541.1\|142295_142640_-	hypothetical protein	NA	NA	NA	NA
WP_069177542.1\|142675_143002_-\|head	phage head closure protein	NA	NA	NA	NA
WP_069177543.1\|143004_143301_-	hypothetical protein	A0A290FZN8	Caldibacillus_phage	1.9e-13	44.2
WP_069177544.1\|143464_144718_-\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_069177545.1\|144717_145392_-\|head,protease	HK97 family phage prohead protease	Q8LTC1	Lactobacillus_phage	1.9e-13	33.6
WP_069177546.1\|145483_145894_-	hypothetical protein	NA	NA	NA	NA
WP_069177547.1\|146236_147406_-\|portal	phage portal protein	A0A290G4I4	Caldibacillus_phage	1.4e-43	32.8
WP_069177548.1\|147481_148186_-	M23 family metallopeptidase	A0A142F145	Bacillus_phage	2.2e-12	42.9
WP_069177549.1\|148157_148601_-	hypothetical protein	NA	NA	NA	NA
WP_069177550.1\|148581_148950_-	hypothetical protein	NA	NA	NA	NA
WP_069177551.1\|148957_149338_-	hypothetical protein	NA	NA	NA	NA
WP_069177552.1\|149422_150577_-	Abi family protein	NA	NA	NA	NA
WP_069177553.1\|150851_152519_-\|terminase	terminase large subunit	H7BUQ3	unidentified_phage	5.9e-197	60.1

DBSCAN-SWA_2

2112918 : 2171905

Leptospira_phage(15.38%)

integrase,transposase,protease

attL 2170840:2170864|attR 2171927:2171951

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159060207.1\|2112918_2113290_-\|transposase	transposase	S5WIU1	Leptospira_phage	1.0e-24	55.8
WP_083222143.1\|2113195_2113705_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_022849212.1\|2114140_2114926_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	6.7e-18	31.2
WP_069178783.1\|2114977_2115901_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_083222144.1\|2115999_2117541_+	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.7e-09	33.2
WP_022849484.1\|2117527_2118508_+	ribose ABC transporter permease	NA	NA	NA	NA
WP_022849399.1\|2118647_2119550_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_083222143.1\|2119822_2120332_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_159060208.1\|2120390_2120609_+\|transposase	transposase	S5WIU1	Leptospira_phage	1.3e-16	60.9
WP_022848063.1\|2120979_2121687_-	hypothetical protein	NA	NA	NA	NA
WP_022848064.1\|2122776_2123610_-	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	1.1e-21	29.7
WP_022848065.1\|2123611_2124532_-	stage 0 sporulation protein	NA	NA	NA	NA
WP_022848066.1\|2124579_2125221_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_069178786.1\|2125460_2126453_+	P1 family peptidase	L7XZF8	Megavirus	1.6e-11	29.7
WP_022848070.1\|2126735_2127944_+	sigma-70 family RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	4.0e-38	35.4
WP_069178787.1\|2128075_2129779_+	hypothetical protein	NA	NA	NA	NA
WP_022848072.1\|2129805_2130264_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	5.8e-30	51.9
WP_022848073.1\|2130260_2130686_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	Q4ZC04	Staphylococcus_virus	2.6e-16	31.4
WP_069178788.1\|2131115_2132555_+	trigger factor	NA	NA	NA	NA
WP_022848075.1\|2132775_2133378_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	8.7e-50	50.3
WP_022848076.1\|2133565_2134375_+	HAD-IIA family hydrolase	NA	NA	NA	NA
WP_069178789.1\|2134408_2135449_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_022848078.1\|2135481_2136399_+	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	6.0e-18	35.5
WP_022848079.1\|2136419_2137508_+	peptide chain release factor 2	W8EDB3	Pseudomonas_phage	1.4e-05	36.6
WP_069178790.1\|2137596_2138034_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_069178792.1\|2138518_2140558_+	hypothetical protein	NA	NA	NA	NA
WP_069178793.1\|2140730_2141777_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_069178794.1\|2141876_2144300_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_069178795.1\|2144309_2145398_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	4.6e-25	34.6
WP_069178796.1\|2145454_2146729_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_069178797.1\|2146760_2148074_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_069179408.1\|2148350_2149766_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_069178798.1\|2149762_2150017_+	hypothetical protein	NA	NA	NA	NA
WP_069178799.1\|2150030_2150339_+	AtpZ/AtpI family protein	NA	NA	NA	NA
WP_159060209.1\|2150335_2150689_+	hypothetical protein	NA	NA	NA	NA
WP_069178800.1\|2150672_2151371_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_069178801.1\|2151363_2151648_+	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_069178802.1\|2151651_2152446_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_107528695.1\|2152426_2154124_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_069178803.1\|2154120_2154447_+	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_069178804.1\|2154532_2155510_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_069178805.1\|2155540_2156863_-	citrate (Si)-synthase	NA	NA	NA	NA
WP_069178806.1\|2156852_2157647_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_069178807.1\|2157807_2159019_-	hypothetical protein	NA	NA	NA	NA
WP_069178808.1\|2159068_2160130_-	hypothetical protein	NA	NA	NA	NA
WP_069178809.1\|2160155_2160974_-	hypothetical protein	NA	NA	NA	NA
WP_083222150.1\|2161181_2162465_-	hypothetical protein	NA	NA	NA	NA
WP_069178811.1\|2162461_2163199_-	hypothetical protein	NA	NA	NA	NA
WP_069178812.1\|2163254_2163782_-	hypothetical protein	NA	NA	NA	NA
WP_069178813.1\|2163903_2164680_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_069178814.1\|2164812_2170755_-	hypothetical protein	NA	NA	NA	NA
2170840:2170864	attL	NA	NA	NA	NA
WP_069178815.1\|2170975_2171905_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_069178815.1\|2170975_2171905_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
2171927:2171951	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2408118 : 2417354

Sinorhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022848855.1\|2408118_2409486_+	FkbM family methyltransferase	S5M6G6	Sinorhizobium_phage	5.8e-09	31.5
WP_022848854.1\|2409500_2410568_+	CDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	4.7e-14	22.4
WP_022848853.1\|2410564_2411488_+	NAD(P)-dependent oxidoreductase	A0A1V0SAI6	Catovirus	3.8e-12	24.8
WP_069178962.1\|2411490_2412066_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	3.9e-23	35.2
WP_022849363.1\|2412080_2413235_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	1.5e-50	32.9
WP_083222177.1\|2413352_2417354_+	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	3.5e-195	37.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017039

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection