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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP049045 Pseudomonas sp. BIOMIG1BAC chromosome, complete genome 4 crisprs DEDDh,DinG,csa3,cas3,PD-DExK,WYL,PrimPol,RT 0 2 15 0

Results visualization

1. NZ_CP049045
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049045_1 665633-665737 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049045_2 1196774-1197042 Orphan I-F
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049045_3 6385578-6385672 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP049045_4 7655585-7655671 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP047261 Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence 142713-142744 1 0.969
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP026333 Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence 190799-190830 2 0.938
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP046903 Pseudomonas stutzeri strain PM101005 plasmid p1_PM101005, complete sequence 26495-26526 2 0.938
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_MH061177 Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence 36517-36548 3 0.906
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP032632 Pseudomonas syringae pv. actinidiae str. Shaanxi_M228 plasmid pM228, complete sequence 59632-59663 3 0.906
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP011973 Pseudomonas syringae pv. actinidiae ICMP 18884 plasmid unnamed, complete sequence 55333-55364 3 0.906
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP032870 Pseudomonas syringae pv. actinidiae strain P220 plasmid pLKQG722, complete sequence 65704-65735 3 0.906
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP012180 Pseudomonas syringae pv. actinidiae ICMP 18708 plasmid unnamed, complete sequence 57761-57792 3 0.906
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP019733 Pseudomonas syringae pv. actinidiae strain CRAFRU 14.08 plasmid unnamed, complete sequence 45961-45992 3 0.906
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP017010 Pseudomonas syringae pv. actinidiae strain NZ-47 plasmid pPsa22180a, complete sequence 55332-55363 3 0.906
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP017008 Pseudomonas syringae pv. actinidiae strain ICMP 20586 plasmid pPsa20586, complete sequence 55333-55364 3 0.906
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP019731 Pseudomonas syringae pv. actinidiae strain CRAFRU 12.29 plasmid unnamed, complete sequence 45962-45993 3 0.906
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP005961 Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence 42363-42394 4 0.875
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 LT599585 Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid 328299-328330 6 0.812
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP041164 Leisingera aquaemixtae strain R2C4 plasmid unnamed3, complete sequence 71337-71368 8 0.75
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NC_018701 Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence 1076688-1076719 8 0.75
NZ_CP049045_2 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196983-1197014 32 NZ_CP021810 Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence 200583-200614 8 0.75
NZ_CP049045_2 2.2|1196863|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196863-1196894 32 NZ_CP025986 Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence 1207642-1207673 9 0.719
NZ_CP049045_2 2.2|1196863|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT 1196863-1196894 32 MN855977 Myoviridae sp. isolate 214, complete genome 5165-5196 10 0.688

1. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047261 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326F, complete sequence) position: , mismatch: 1, identity: 0.969

ttttgcagtaccagggcgcgcttttcgcgtcc	CRISPR spacer
ttttgcactaccagggcgcgcttttcgcgtcc	Protospacer
******* ************************

2. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 2, identity: 0.938

ttttgcagtaccagggcgcgcttttcgcgtcc	CRISPR spacer
ttttgcagtaccagggcgcggatttcgcgtcc	Protospacer
********************  **********

3. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046903 (Pseudomonas stutzeri strain PM101005 plasmid p1_PM101005, complete sequence) position: , mismatch: 2, identity: 0.938

ttttgcagtaccagggcgcgcttttcgcgtcc	CRISPR spacer
tttggcagtaccagggcgcgtttttcgcgtcc	Protospacer
*** ****************.***********

4. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH061177 (Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence) position: , mismatch: 3, identity: 0.906

ttttgcagtaccagggcgcgcttttcgcgtcc	CRISPR spacer
ttatgcagtaccagggcgcggttttcgcgtct	Protospacer
** ***************** **********.

5. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032632 (Pseudomonas syringae pv. actinidiae str. Shaanxi_M228 plasmid pM228, complete sequence) position: , mismatch: 3, identity: 0.906

ttttgcagtaccagggcgcgcttttcgcgtcc-	CRISPR spacer
tttggcagtaccagggcgcg-gtttcgcgtccg	Protospacer
*** ****************  ********** 

6. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011973 (Pseudomonas syringae pv. actinidiae ICMP 18884 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.906

ttttgcagtaccagggcgcgcttttcgcgtcc-	CRISPR spacer
tttggcagtaccagggcgcg-gtttcgcgtccg	Protospacer
*** ****************  ********** 

7. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032870 (Pseudomonas syringae pv. actinidiae strain P220 plasmid pLKQG722, complete sequence) position: , mismatch: 3, identity: 0.906

ttttgcagtaccagggcgcgcttttcgcgtcc-	CRISPR spacer
tttggcagtaccagggcgcg-gtttcgcgtccg	Protospacer
*** ****************  ********** 

8. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012180 (Pseudomonas syringae pv. actinidiae ICMP 18708 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.906

ttttgcagtaccagggcgcgcttttcgcgtcc-	CRISPR spacer
tttggcagtaccagggcgcg-gtttcgcgtccg	Protospacer
*** ****************  ********** 

9. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019733 (Pseudomonas syringae pv. actinidiae strain CRAFRU 14.08 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.906

ttttgcagtaccagggcgcgcttttcgcgtcc-	CRISPR spacer
tttggcagtaccagggcgcg-gtttcgcgtccg	Protospacer
*** ****************  ********** 

10. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017010 (Pseudomonas syringae pv. actinidiae strain NZ-47 plasmid pPsa22180a, complete sequence) position: , mismatch: 3, identity: 0.906

ttttgcagtaccagggcgcgcttttcgcgtcc-	CRISPR spacer
tttggcagtaccagggcgcg-gtttcgcgtccg	Protospacer
*** ****************  ********** 

11. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017008 (Pseudomonas syringae pv. actinidiae strain ICMP 20586 plasmid pPsa20586, complete sequence) position: , mismatch: 3, identity: 0.906

ttttgcagtaccagggcgcgcttttcgcgtcc-	CRISPR spacer
tttggcagtaccagggcgcg-gtttcgcgtccg	Protospacer
*** ****************  ********** 

12. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019731 (Pseudomonas syringae pv. actinidiae strain CRAFRU 12.29 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.906

ttttgcagtaccagggcgcgcttttcgcgtcc-	CRISPR spacer
tttggcagtaccagggcgcg-gtttcgcgtccg	Protospacer
*** ****************  ********** 

13. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005961 (Pseudomonas mandelii JR-1 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.875

ttttgcagtaccagggcgcgcttttcgcgtcc	CRISPR spacer
agatgcagtaccagggcgcggttttcgcgtcc	Protospacer
   ***************** ***********

14. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 6, identity: 0.812

ttttgcagtaccagggcgcgcttttcgcgtcc	CRISPR spacer
ttcggcagtaccagggcgcgggtttcgcgcct	Protospacer
**. ****************  *******.*.

15. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041164 (Leisingera aquaemixtae strain R2C4 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ttttgcagtaccagggcgcgcttttcgcgtcc	CRISPR spacer
ttttgcattaccagggcgggcttggcctgcgc	Protospacer
******* ********** ****  * .*. *

16. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 8, identity: 0.75

ttttgcagtaccagggcgcgcttttcgcgtcc	CRISPR spacer
atgcccaggaccagggcgcgcttgtcgccgcc	Protospacer
 * . *** ************** ****  **

17. spacer 2.4|1196983|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

ttttgcagtaccagggcgcgcttttcgcgtcc	CRISPR spacer
atgcccaggaccagggcgcgcttgtcgccgcc	Protospacer
 * . *** ************** ****  **

18. spacer 2.2|1196863|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 9, identity: 0.719

gctat-caccagccatgggcggcttgagctgta	CRISPR spacer
-caacgcaccggccatgggcggcatgagcgcgc	Protospacer
 * *. ****.************ *****    

19. spacer 2.2|1196863|32|NZ_CP049045|PILER-CR,CRISPRCasFinder,CRT matches to MN855977 (Myoviridae sp. isolate 214, complete genome) position: , mismatch: 10, identity: 0.688

gctatcaccagccatgggcggcttgagctgta	CRISPR spacer
cttcatttcatccatgagcggcttgagctgtt	Protospacer
 .*  . .** *****.************** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 404840 : 441606 26 Moraxella_phage(16.67%) transposase,capsid,protease,integrase,head attL 435347:435395|attR 445941:445989
DBSCAN-SWA_2 575749 : 584530 7 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_3 1514957 : 1568634 45 Acidithiobacillus_phage(20.0%) integrase,tRNA,transposase attL 1559817:1559876|attR 1567551:1568665
DBSCAN-SWA_4 1582979 : 1677093 106 Pseudomonas_phage(36.62%) tRNA,holin,plate,protease,tail NA
DBSCAN-SWA_5 2244091 : 2302845 71 uncultured_Caudovirales_phage(78.57%) holin,plate,protease,capsid,bacteriocin,integrase,terminase,portal,tail,head attL 2243945:2243978|attR 2284821:2284854
DBSCAN-SWA_6 2916532 : 2946866 21 uncultured_Caudovirales_phage(30.0%) integrase,transposase attL 2930674:2930709|attR 2951768:2951803
DBSCAN-SWA_7 3343228 : 3433191 25 Ralstonia_phage(27.27%) holin,integrase,transposase attL 3345958:3346017|attR 3354788:3355985
DBSCAN-SWA_8 4361765 : 4419717 70 Pseudomonas_phage(30.0%) plate,transposase,capsid,integrase,terminase,tail attL 4356227:4356243|attR 4430658:4430674
DBSCAN-SWA_9 4526051 : 4586090 56 uncultured_Caudovirales_phage(60.0%) integrase,transposase attL 4569227:4569242|attR 4594955:4594970
DBSCAN-SWA_10 4779673 : 4862681 81 Pseudomonas_phage(38.24%) tRNA,holin,plate,transposase,capsid,integrase,portal,tail,terminase,head attL 4837559:4837573|attR 4863866:4863880
DBSCAN-SWA_11 5263972 : 5270167 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_12 6370868 : 6403606 38 uncultured_Mediterranean_phage(17.65%) tRNA,transposase,capsid,protease,integrase,portal,terminase,head attL 6391620:6391638|attR 6404087:6404105
DBSCAN-SWA_13 6565449 : 6603321 31 Ralstonia_phage(40.0%) integrase,tRNA,transposase attL 6578345:6578404|attR 6609861:6610971
DBSCAN-SWA_14 6828512 : 6875994 39 Salmonella_phage(37.5%) integrase,transposase attL 6838111:6838127|attR 6876316:6876332
DBSCAN-SWA_15 7270004 : 7335681 58 Escherichia_phage(20.0%) protease,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage