CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP014929	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-5, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	1 crisprs	NA	0	1	5	1
NZ_CP014928	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence	2 crisprs	NA	0	2	0	0
NZ_CP014930	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-6, complete sequence	0 crisprs	RT	0	0	0	0
NZ_CP014924	Lactobacillus paracollinoides strain TMW 1.1995 chromosome, complete genome	16 crisprs	cas3,RT,csa3,cas14j,PrimPol,WYL,cas9,cas1,cas2,csn2,cas8e,cse2gr11,cas7,cas5,cas6e,DinG,DEDDh	1	13	4	0
NZ_CP014931	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-7, complete sequence	1 crisprs	NA	0	1	0	0
NZ_CP014926	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-2, complete sequence	1 crisprs	RT	0	1	1	0
NZ_CP014927	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence	1 crisprs	NA	1	1	0	0
NZ_CP014925	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-1, complete sequence	0 crisprs	RT,cas14j	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014932_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014932_1

38822-38924

Orphan

Consensus_repeat	Method
ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014932_1

>merge|NZ_CP014932|1|38822-38924|CRISPRCasFinder
ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTTGAGCGTCCTTTTCAACGGTGTCATGCTGAACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT

>NZ_CP014932|1|1|38822-38924|CRISPRCasFinder
ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT	GAGCGTCCTTTTCAACGGTGTCATGCTGA
ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014932.1\|WP_003561820.1\|43262_44141_+\|IS982-like-element-ISLpl4-family-transposase	unknown	unknown	gnl\|CDD\|372648
NZ_CP014932.1\|WP_003561820.1\|41291_42170_-\|IS982-like-element-ISLpl4-family-transposase	unknown	unknown	gnl\|CDD\|372648
NZ_CP014932.1\|WP_006351716.1\|47114_47501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014932.1\|WP_010620892.1\|37546_37732_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014932.1\|WP_003649837.1\|40768_40984_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014932.1\|WP_191982569.1\|51377_52364_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP014932.1\|WP_065868904.1\|48461_49145_-\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP014932.1\|WP_042749386.1\|45618_46983_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181958
NZ_CP014932.1\|WP_014386869.1\|36601_36880_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014932.1\|WP_083215626.1\|29267_30506_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341162
NZ_CP014932.1\|WP_065937755.1\|36369_36579_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014932.1\|WP_083215627.1\|32402_34007_-\|type-IA-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236078
NZ_CP014932.1\|WP_003591692.1\|49284_50613_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340890
NZ_CP014932.1\|WP_065937833.1\|34035_36099_-\|MobA/MobL-family-protein	unknown	unknown	gnl\|CDD\|367473
NZ_CP014932.1\|WP_014386870.1\|36869_37550_-\|zeta-toxin-family-protein	unknown	unknown	gnl\|CDD\|226648
NZ_CP014932.1\|WP_003679901.1\|32065_32281_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014932.1\|WP_017866972.1\|39976_40762_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP014932.1\|WP_014386871.1\|37778_38060_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_CP014932.1\|WP_065937832.1\|30937_32062_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014932.1\|WP_056992669.1\|42343_43138_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730

Protein	Function_ID	Function_description	E-value
NZ_CP014932.1\|WP_003561820.1\|43262_44141_+\|IS982-like-element-ISLpl4-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.03527e-17
NZ_CP014932.1\|WP_003561820.1\|41291_42170_-\|IS982-like-element-ISLpl4-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.03527e-17
NZ_CP014932.1\|WP_083215627.1\|32402_34007_-\|type-IA-DNA-topoisomerase	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	1.83741e-135
NZ_CP014932.1\|WP_014386871.1\|37778_38060_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	1.00264e-10
NZ_CP014932.1\|WP_083215626.1\|29267_30506_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341162	cd17273, RMtype1_S_EcoJA69PI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.EcoJA69PI TRD1-CR1, MjaXIP/S.MjaORF132P TRD2-CR2, and S.HspDL1ORF16625P TRD2-CR2. Escherichia coli UCD_JA69_pb S subunit (S.EcoJA69PI) recognizes 5'... CCANNNNNNNCTTC ... 3'. The recognition sequences of Methanococcus jannaschii MjaXIP/S.MjaORF132P TRD2-CR2 and Halobacterium species DL1 S subunit (S.HspDL1ORF16625P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It also includes TRD-CR-like sequence-recognition domains of various putative type II restriction enzymes and methyltransferases and may also include type I DNA methyltransferases.	1.92783e-91
NZ_CP014932.1\|WP_042749386.1\|45618_46983_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	6.0136e-93
NZ_CP014932.1\|WP_003591692.1\|49284_50613_-\|MFS-transporter	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.00022e-101
NZ_CP014932.1\|WP_065937833.1\|34035_36099_-\|MobA/MobL-family-protein	gnl\|CDD\|367473	pfam03389, MobA_MobL, MobA/MobL family. This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilisation proteins, which are essential for specific plasmid transfer.	2.60689e-102
NZ_CP014932.1\|WP_014386870.1\|36869_37550_-\|zeta-toxin-family-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	1.04185e-38
NZ_CP014932.1\|WP_191982569.1\|51377_52364_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	8.78068e-92
NZ_CP014932.1\|WP_017866972.1\|39976_40762_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	2.22651e-36
NZ_CP014932.1\|WP_065868904.1\|48461_49145_-\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.03552e-66
NZ_CP014932.1\|WP_056992669.1\|42343_43138_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	9.71043e-14

>NZ_CP014932.1|WP_014386871.1|37778_38060_-|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MAVKEKKRVQVQIDKELADNTEAVLSQLGLNPTTAINMFYKRIVADAALPFKPALSEAERANLSLLKVTKETPVTEFKDAKEVADWLNDPDED
>NZ_CP014932.1|WP_010620892.1|37546_37732_-|hypothetical-protein
MKDTITINDFFEIAKETDLKDLLDKSLHEPDPEKRKVYDALYTYFLDKRQDEVIKRKDFVR
>NZ_CP014932.1|WP_014386870.1|36869_37550_-|zeta-toxin-family-protein
MIDKPQYIIVAGINGAGKSTLYDTFPILFDKTKRINADELLRQMGGDWHKDSDNLKAMKEEIKQLHYALDHQQSIHVETTLAGRGKAQLNLIDKAHKNGFEVTLLYVALRDENLAIQRVNERVQKGGHGVPVATIKKRYQQSKHNLPLVAFKSDKVMIYDNSEKFTSVYAREKGQVFKNDLRHFPWINQNITYPEKVQKQLQNFADQNPEIKPKNDPENKNDRPSY
>NZ_CP014932.1|WP_014386869.1|36601_36880_+|hypothetical-protein
MSNQYEKLVEQQARLKQKIEREDFKLRQSKYYENRQSRKARSRRLIQKGALLEKYFQANNLSVEQTEELLKTFANYVNAHKPNKFKDDQPNN
>NZ_CP014932.1|WP_065937755.1|36369_36579_+|hypothetical-protein
MSQSNLEKQEAKLKALNQKIKDEKNNIEQRIGKQIISQSNLDYANLSNDQIKILAKQFSEFLKVKSVDH
>NZ_CP014932.1|WP_065937833.1|34035_36099_-|MobA/MobL-family-protein
MAIFHMSFSNISAGKGRSAIAGSSYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWNEVERKDRRANSRYAKEFNVDLPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNRPFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIPDRISEKSFIEEGIDDTPTQHEGINSKRHERKEFNQQVKNYRKSKAGYKNNQEKVINRGHLDSLSKHFSFNEKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLAQQLLTFTKRPYVGFKLLMQQEKKVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIKTQYHEVLKRAFPKGDLDELPMTKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQLENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQMQLKEQQAKDDQYRKANIGHYQPLNYKPVSPDYYLKTAFSDAIMTVLYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHEDGGMHL
>NZ_CP014932.1|WP_083215627.1|32402_34007_-|type-IA-DNA-topoisomerase
MNGSPLYTLLLRQNGVRGVYSIGRVQTPTLYMVYQRDQAIKNFKPEPYFELNAEILANQQKFVAKLDPYQRFKDEAGLITFMQAKRVQKGSQAGLIKDVQKQDKKRASPQLFSLSSLQSAMNKRYHASAGQTLAAIQSLYEAKFLSYLRTDCAYITDEEFEYLVANLTKYLGLVSKQVAVTNTTPNKRYVNGKKVEEHYAIIMTKVVPTKEKLASLPKLQQQVYDLVLKTTLAMFADPYEYEETTIITQVGDANFKATGKVPTKQGWQALFDDHKAEQQEAATLPIVHQGDQVKANLQTPQKETTPPVPFTEGTLITAMKTAGKTLDDEEAQAILKDVQGIGTSATRANVLEILKKRGYLVTEKNKLHVSEAGITLCKAVELEPLLISPEMTAKWEQALQQISTEERTPDNFLSQIKKFVTKLIADVPTQLTGSAAIKQQINHQQQAQKSAEVFLETPQATVLNKQKFYIVKSKQGEDFTLPKKWSSKTLGKTAIKALVTKGETSKLKGFKSKKGKSFDAKLKLDGHKLSFDFD
>NZ_CP014932.1|WP_003679901.1|32065_32281_-|hypothetical-protein
MNNELAVLASELPVLQAKGTYKYLKEITGNGAYYQVAWQKLSDGYVALYGTTPIQIRSLPTLNDIFEDEEG
>NZ_CP014932.1|WP_065937832.1|30937_32062_-|hypothetical-protein
MPNKADVKAWKAQLVAQAEQQILKLTDSDQFKKYLNTLAKFHRYSARNIDLIYAQNPQATQVAGFKQWQKAFNRTVNRGAKAIRIAAPIIKKLTPAEQKHLDTTDERAIVGYRYLPVFDVAQTSGEPVLSAKDFVKENLADHQNVTSLYNAFKDYLNQQTDLKVSEVPLATLNGAKGYFQPSTNEIVIGGDEPDNALKLKTLYHEYAHSQLHGLKSAFKDRPRAYQETQAEAVAYVAMQNIGVDTSNYSLGYVATWAKDKAVIHSALSEIQQVSNKVIELSDGLTKQLGLQEAPKEPEHDLKKLSAHDLNKSYQGLQQQIQQATSPQQKAQFKKQLNDVHQEISERTQKQLKAFAEQNPEIKQPESELDQSLKR
>NZ_CP014932.1|WP_083215626.1|29267_30506_+|restriction-endonuclease-subunit-S
MKDKHTKYPQLRFKGFTDPWEQRKLSEIYDKIRNAFVGTATPYYVNQGHFYLESNNVKYGKLNFNNEVYINDDFYQKQKPNWLHTGDLVVVQSGHVGHSAVIPSELNNTAAHAVIIVAKPKQKIDPYFINDYLQTNIARKQIDNITTGNTIKHILASAMKMFEVSLPSYEEQRPISNLLAQIDDTITLHQRKLAKLKELKQGYLQKLFPKNGSKFPQLRFAGFADAWEERKLGELSNIVGGGTPSTSNPEYWDGDIDWYAPAEIGEQSYVSKSKKTITELGLKKSSARILPVGTVLFTSRAGIGNTAILAKEATTNQGFQSIVPDQNKLDSYFIFSRTNELKRYGEVTGAGSTFVEVSGKQMSKMSIMVPELSEQQKIGSFFKQLDDTIALHQRKLEKLQELKKGYLQKMFC
>NZ_CP014932.1|WP_017866972.1|39976_40762_+|AAA-family-ATPase
MNGKTLLNFNFKGGVGKTTLTVMETYLLGQEGKKVLLIDFDPQGNATEIMKETYKADLKPELSLYEGLLGGNLSKSIVSVTNQIDMIPTDWTLSLWIGAVEKVSRVKRNILLPQMLSKLKQNYDYIFIDVPPTINVFTNNAIMASDFISIVLQTQKQSYTSSLKTATHLGELREQYNGSFQLVGAILYLMKPRAKVDTEISAQAKDFFGEGVFSNSIRTQERVKTFANEGIRNKDHWDKRAIQMYQMVLNEQILRIQQLEE
>NZ_CP014932.1|WP_003649837.1|40768_40984_+|hypothetical-protein
MAEDFLNKVSKKASEQLKNLKSPYQFETERTKTVQLRMSTYKEVKRIAFENDEKIVDVLEKIIREGLAKRK
>NZ_CP014932.1|WP_003561820.1|41291_42170_-|IS982-like-element-ISLpl4-family-transposase
MLNHPKFKQIRHELQGNYHYFYQLCQSLYQRYCPRCVTQRRNVAHVKIDDCRLLALLCLQTTLGIQSQRRFWRLMTAFMPQKITISRSRFNRRALQLLPVVNAIRTGLTREAAQPGQIAIIDSLPNPLCEPVRKFRARIFAGQANIGYNATKQMSFYGFKTHMLVTTDGYILNYVVTAASVHDTKVAVSLIDDCPCPIVLADVGYVGKRLGAEFKQLGYTLWTPYRSNMKGAKEHNKRALKALRRTIESRFSTLVSDFGIETNLTRSAFGFQLKIELAILVYNLGFFNFVTN
>NZ_CP014932.1|WP_056992669.1|42343_43138_-|alpha/beta-hydrolase
MQITKTPLNQVNPQSQAELISYVDPSLTDALNPALIFVPGGSYTHIDFKQSEKVALRFLSLGFQVSILRYSFVDEVQPLFPAPLLETAQAIATTKQNAAQWHVDRQKVMLMGFSVGGHVVANYNNLWSSDWLQAQTHLSAEDLKPATTILGYPVITPFDGFPDQPTLAQWTNNPDEIAADQHVTADNAPTFIWATTDDQLVSSKNAVDYFLALQAHQVPTELHLYHHGPHGMALADETTAYDERHQDSRIADWIANALAFLREL
>NZ_CP014932.1|WP_003561820.1|43262_44141_+|IS982-like-element-ISLpl4-family-transposase
MLNHPKFKQIRHELQGNYHYFYQLCQSLYQRYCPRCVTQRRNVAHVKIDDCRLLALLCLQTTLGIQSQRRFWRLMTAFMPQKITISRSRFNRRALQLLPVVNAIRTGLTREAAQPGQIAIIDSLPNPLCEPVRKFRARIFAGQANIGYNATKQMSFYGFKTHMLVTTDGYILNYVVTAASVHDTKVAVSLIDDCPCPIVLADVGYVGKRLGAEFKQLGYTLWTPYRSNMKGAKEHNKRALKALRRTIESRFSTLVSDFGIETNLTRSAFGFQLKIELAILVYNLGFFNFVTN
>NZ_CP014932.1|WP_042749386.1|45618_46983_-|FAD-dependent-oxidoreductase
MDKRKIVIVGASHGGHESAIELLDKYNDVDVTVYEAGDFISFMSCGMQLYLENKVTAEDDVRNFAPEDVEKKGGHVYANHEVTAIHPEHKTVTVKDLTNNSEEEVQYDKLILSSGVTPKVLPVPGNDLKNIYLMRGRDWASKLMSAVNNPAIKNVAIVGAGYIGTEASEVFAKAGKHVTLMDMIDRPLGTYLNPELLDVLEPTFKKNMDLKMGVKIEGFNGNEKVESVKTDQGDIPADLVVVSAGVTPNTDWIKGTVDLDQRGWIKTDPYLRTNVKDVYAIGDAILPLSIPAGKPMPIALATTARREAQYVVDHIFEDKPDRAFKGVIGASALSVFDYHFATAGLNKFSAAKNKLDYQTSFYEDHMRPAYVPEADNPKVYVSLTFNPYTHQILGGAVLSKYDITAQGNVLALAISHKMRLEDLAEQDFFFQPGFDRQWSLLNLAAQHALGMARF
>NZ_CP014932.1|WP_006351716.1|47114_47501_-|hypothetical-protein
MTKIMNEDFLDVLQDKGPATIVSINGNPASVVNTWSQYINVVSDDIILIPAAGMHSIEQDFEKDPKHELIITIGSYNYSGTAGMGRGYHIHGSGQFINEGAYFDQMKAQFDWIRAVLVVKIHDVEQKI
>NZ_CP014932.1|WP_065868904.1|48461_49145_-|IS6-family-transposase
MNHFKGRHFQKDIILVAVGYYFRFSLSYRDIVELLRDRGITVHHTTVMRWVHHYGPIFKALWRRHQTAHAKSWRIDETYIRVKGRWAYLYRAIDSNGLTMDFELRKHRDYTASYHFLKRLLTTNGRPDRLVTDQYRATLKAVKHLIKQDYLSKSAHQCSKYRNNLIEQDHRFIKRHRVRSASFQSIRTASATLSGVEIVHAILKRTRRELSLIGFSVVDELEALLAA
>NZ_CP014932.1|WP_003591692.1|49284_50613_-|MFS-transporter
MKSTTKWVTRWPERISYGLSDAADNLVFQMMTTYLLFFYTDVYGLTPSAVAILFVVARVADVVESFVIGIMIDHTHSRFGKSRPFFLWYSLPYVIFAVLTFVTPNFSYNGKLIWAYVTYLGLGFLYTAVNLPITSILPTMSQNTRELTLLGVIRQFFGSSVQIVVAVFTLPLVAFFGHGNQQKGFLGTIIVFSLISFLLIINTFVHVRERFANPEIAHQPLTTVLKMLKHNQPWIVMSIVILMYWLVTAIKNQTTIYYFKYTVGNENLVPLANSFTLAALIGVLLIIRITEVRSKKQTMLRGILMALVGQAVIAVGVYTKILWFLFGGVLINSIGNGIIIGLVSIMIADTIRYGASMGIQAEGILASTDDFGVNVGLGVGGLITAGLFHFSGYVANRTQNAATLTMINLNYVWIPLVIYVGMYFVLRLYDEGRIERAIEARK
>NZ_CP014932.1|WP_191982569.1|51377_52364_+|IS30-family-transposase
MSYKHLTIKEREMLMFLRAKGLSIRAVALRLGRNPSTISRELKRCVGNYSLSKAENDYHQKRQNCHKKRLLDSHPQLRRQIVHYILDLHWSPEQITARFNKEHQWCVSYNTIYRHIYQHNLGEKYSSRGDTGIQRHLRHKHRTRHSKNTRRHREVQTDYISIHERPGFINQRQRIGDWEIDTVIGRTGHSILLTVVDRLSRLTLIKKVAQKDSQEINKGLVELLGAIPKEFVHSITPDHGTEFLHLDEISERLGVTVYWPDPYSPEQRGTNENTNGLIREYFPKRTDIDNYTEQDVEHRQKQLNQRPRKVLNYETPYEVFFDKPLHLV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014932_1	1.1\|38859\|29\|NZ_CP014932\|CRISPRCasFinder	38859-38887	29	NZ_CP014927	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence	35572-35600	0	1.0
NZ_CP014932_1	1.1\|38859\|29\|NZ_CP014932\|CRISPRCasFinder	38859-38887	29	NZ_CP014928	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence	27242-27270	0	1.0
NZ_CP014932_1	1.1\|38859\|29\|NZ_CP014932\|CRISPRCasFinder	38859-38887	29	NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	38859-38887	0	1.0
NZ_CP014932_1	1.1\|38859\|29\|NZ_CP014932\|CRISPRCasFinder	38859-38887	29	NZ_CP014918	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-3, complete sequence	5597-5625	0	1.0
NZ_CP014932_1	1.1\|38859\|29\|NZ_CP014932\|CRISPRCasFinder	38859-38887	29	NZ_CP017263	Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.22, complete sequence	23049-23077	0	1.0
NZ_CP014932_1	1.1\|38859\|29\|NZ_CP014932\|CRISPRCasFinder	38859-38887	29	NC_022114	Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence	633-661	0	1.0
NZ_CP014932_1	1.1\|38859\|29\|NZ_CP014932\|CRISPRCasFinder	38859-38887	29	NZ_CP031201	Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_C, complete sequence	6996-7024	0	1.0
NZ_CP014932_1	1.1\|38859\|29\|NZ_CP014932\|CRISPRCasFinder	38859-38887	29	NZ_CP019324	Lactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence	27911-27939	0	1.0
NZ_CP014932_1	1.1\|38859\|29\|NZ_CP014932\|CRISPRCasFinder	38859-38887	29	NZ_CP018330	Lactobacillus plantarum subsp. plantarum strain TS12 plasmid pLP12-6, complete sequence	18421-18449	2	0.931

1. spacer 1.1|38859|29|NZ_CP014932|CRISPRCasFinder matches to NZ_CP014927 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

2. spacer 1.1|38859|29|NZ_CP014932|CRISPRCasFinder matches to NZ_CP014928 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

3. spacer 1.1|38859|29|NZ_CP014932|CRISPRCasFinder matches to NZ_CP014932 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

4. spacer 1.1|38859|29|NZ_CP014932|CRISPRCasFinder matches to NZ_CP014918 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-3, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

5. spacer 1.1|38859|29|NZ_CP014932|CRISPRCasFinder matches to NZ_CP017263 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.22, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

6. spacer 1.1|38859|29|NZ_CP014932|CRISPRCasFinder matches to NC_022114 (Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

7. spacer 1.1|38859|29|NZ_CP014932|CRISPRCasFinder matches to NZ_CP031201 (Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_C, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

8. spacer 1.1|38859|29|NZ_CP014932|CRISPRCasFinder matches to NZ_CP019324 (Lactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

9. spacer 1.1|38859|29|NZ_CP014932|CRISPRCasFinder matches to NZ_CP018330 (Lactobacillus plantarum subsp. plantarum strain TS12 plasmid pLP12-6, complete sequence) position: , mismatch: 2, identity: 0.931

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgcccttctcaacggtgtcatgctga	Protospacer
*****.****.******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 1896

Lactobacillus_phage(100.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156773239.1\|1060_1896_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	5.2e-85	99.4

DBSCAN-SWA_2

7224 : 9097

Staphylococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065937820.1\|7224_8250_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.5e-41	35.2
WP_065937821.1\|8512_9097_-	recombinase family protein	M9Q1K0	Clostridium_phage	2.0e-19	34.2

DBSCAN-SWA_3

17596 : 34007

Streptococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065937824.1\|17596_18898_+	Y-family DNA polymerase	M1Q231	Streptococcus_phage	6.7e-79	38.7
WP_032809155.1\|18890_19211_+	hypothetical protein	NA	NA	NA	NA
WP_065937825.1\|19203_19590_+	hypothetical protein	NA	NA	NA	NA
WP_065937826.1\|19646_20483_-	GIY-YIG nuclease family protein	J7KF35	Aeromonas_phage	8.2e-06	34.0
WP_065937827.1\|20601_20781_+	hypothetical protein	NA	NA	NA	NA
WP_042749361.1\|20773_21130_+	IS66 family insertion sequence element accessory protein TnpB	S5WJH4	Leptospira_phage	6.8e-10	36.6
WP_191982570.1\|21213_22755_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	5.1e-54	32.1
WP_065937829.1\|22879_23974_-	lysozyme	NA	NA	NA	NA
WP_065937830.1\|24474_27642_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	4.8e-22	22.6
WP_065937831.1\|27655_29278_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.6e-127	50.1
WP_083215626.1\|29267_30506_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	3.8e-15	32.1
WP_065937832.1\|30937_32062_-	hypothetical protein	NA	NA	NA	NA
WP_003679901.1\|32065_32281_-	hypothetical protein	NA	NA	NA	NA
WP_083215627.1\|32402_34007_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	9.3e-107	46.0

DBSCAN-SWA_4

38292 : 40762

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065937762.1\|38292_39399_-	replication initiator protein A	A0A220GFI5	Streptococcus_phage	2.5e-18	45.5
WP_017866972.1\|39976_40762_+	AAA family ATPase	F0PIG8	Enterococcus_phage	2.0e-30	35.6

DBSCAN-SWA_5

45618 : 53907

Staphylococcus_phage(75.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042749386.1\|45618_46983_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.5e-09	22.6
WP_006351716.1\|47114_47501_-	hypothetical protein	NA	NA	NA	NA
WP_065868904.1\|48461_49145_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.1e-60	51.8
WP_003591692.1\|49284_50613_-	MFS transporter	NA	NA	NA	NA
WP_191982569.1\|51377_52364_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.8e-45	36.9
WP_083215628.1\|52552_52981_+	FMN-binding protein	NA	NA	NA	NA
WP_065937835.1\|53223_53907_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.3e-59	50.9

Anti-CRISPR protein detection

Acr_ID: NZ_CP014932.1|WP_017866972.1|39976_40762_+|AAA-family-ATPase

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP014932.1|WP_017866972.1|39976_40762_+|AAA-family-ATPase

39976_40762_+

261 aa aa

38292-40762

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP014927_1	Orphan	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	38941-38859	23

1. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to NZ_CP014932 position: 38941-38859, mismatch: 23

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

2. NZ_CP014928

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014928_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014928_1

6788-6889

Orphan

Consensus_repeat	Method
GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014928_1

>merge|NZ_CP014928|1|6788-6889|CRISPRCasFinder
GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTTGCGGGGTGTCGTCAACGAACTTTCGCGAACGTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTT

>NZ_CP014928|1|1|6788-6889|CRISPRCasFinder
GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTT	GCGGGGTGTCGTCAACGAACTTTCGCGAAC
GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014928.1\|WP_191982566.1\|11362_12226_+\|DUF4135-domain-containing-protein	unknown	unknown	gnl\|CDD\|271200
NZ_CP014928.1\|WP_014386875.1\|8613_9381_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP014928.1\|WP_056986427.1\|13826_15986_+\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NZ_CP014928.1\|WP_065937754.1\|2027_4091_-\|MobA/MobL-family-protein	unknown	unknown	gnl\|CDD\|367473
NZ_CP014928.1\|WP_065937756.1\|4593_4872_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_010014831.1\|5770_6052_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_CP014928.1\|WP_014386880.1\|15985_16930_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP014928.1\|WP_083215619.1\|12158_13772_+\|type-2-lantipeptide-synthetase-LanM	unknown	unknown	gnl\|CDD\|274840
NZ_CP014928.1\|WP_003679901.1\|57_273_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_014386876.1\|9462_10023_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP014928.1\|WP_065937755.1\|4361_4571_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_065937758.1\|10677_11331_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274840
NZ_CP014928.1\|WP_083215617.1\|394_1999_-\|type-IA-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236078
NZ_CP014928.1\|WP_014386873.1\|7868_8249_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_065937757.1\|4888_5542_-\|zeta-toxin-family-protein	unknown	unknown	gnl\|CDD\|226648
NZ_CP014928.1\|WP_014386874.1\|8312_8612_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_010620892.1\|5538_5724_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_014386877.1\|10421_10598_+\|plantaricin-C-family-lantibiotic	unknown	unknown	gnl\|CDD\|333722

Protein	Function_ID	Function_description	E-value
NZ_CP014928.1\|WP_191982566.1\|11362_12226_+\|DUF4135-domain-containing-protein	gnl\|CDD\|271200	cd04792, LanM-like, Cyclases involved in the biosynthesis of class II lantibiotics, and similar proteins. LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.	4.86843e-94
NZ_CP014928.1\|WP_014386875.1\|8613_9381_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	6.01546e-43
NZ_CP014928.1\|WP_056986427.1\|13826_15986_+\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	7.52149e-144
NZ_CP014928.1\|WP_065937754.1\|2027_4091_-\|MobA/MobL-family-protein	gnl\|CDD\|367473	pfam03389, MobA_MobL, MobA/MobL family. This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilisation proteins, which are essential for specific plasmid transfer.	9.38636e-104
NZ_CP014928.1\|WP_010014831.1\|5770_6052_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	6.2967e-11
NZ_CP014928.1\|WP_014386880.1\|15985_16930_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	3.28348e-87
NZ_CP014928.1\|WP_014386876.1\|9462_10023_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	4.35091e-54
NZ_CP014928.1\|WP_014386877.1\|10421_10598_+\|plantaricin-C-family-lantibiotic	gnl\|CDD\|333722	NF000539, plantaricin, plantaricin C family lantibiotic. This family describes plantaricin C-like lantibiotic precursors. The seed alignment straddles the cleavage motif (typically GG), and includes both an extended leader peptide region and a Cys-rich core peptide region. Because of the mosaic structure of lantibiotic precursors, this family can be expected to overlap other lantibiotic precursor families in the same clan.	8.8934e-07
NZ_CP014928.1\|WP_065937758.1\|10677_11331_+\|hypothetical-protein	gnl\|CDD\|274840	TIGR03897, Lantibiotic_mersacidin_modifying_enzyme, type 2 lantibiotic biosynthesis protein LanM. Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge. [Cellular processes, Toxin production and resistance].	8.58718e-16
NZ_CP014928.1\|WP_083215617.1\|394_1999_-\|type-IA-DNA-topoisomerase	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	1.26629e-139
NZ_CP014928.1\|WP_065937757.1\|4888_5542_-\|zeta-toxin-family-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	3.07718e-38
NZ_CP014928.1\|WP_083215619.1\|12158_13772_+\|type-2-lantipeptide-synthetase-LanM	gnl\|CDD\|274840	TIGR03897, Lantibiotic_mersacidin_modifying_enzyme, type 2 lantibiotic biosynthesis protein LanM. Members of this family are known generally as LanM, a multifunctional enzyme of lantibiotic biosynthesis. This catalysis by LanM distinguishes the type 2 lantibiotics, such as mersacidin, cinnamycin, and lichenicidin, from LanBC-produced type 1 lantibiotics such as nisin and subtilin. The N-terminal domain contains regions associated with Ser and Thr dehydration. The C-terminal region contains a pfam05147 domain, which catalyzes the formation of the lanthionine bridge. [Cellular processes, Toxin production and resistance].	5.37655e-121

>NZ_CP014928.1|WP_010014831.1|5770_6052_-|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MAVKEKKRVQVQIDKELADNTEAVLSQLGLNPTTAINMFYKRIVADAALPFKPALSEAERANLSLLKATKETPVTEFKDAKEVADWLNDPDED
>NZ_CP014928.1|WP_010620892.1|5538_5724_-|hypothetical-protein
MKDTITINDFFEIAKETDLKDLLDKSLHEPDPEKRKVYDALYTYFLDKRQDEVIKRKDFVR
>NZ_CP014928.1|WP_065937757.1|4888_5542_-|zeta-toxin-family-protein
MIDKPQYIIVAGINGAGKSTLYDTFPILFDKTKRINADELLRQMGGDWHKDSDNLKAMKEEIKQLHYALDHQQSIHVETTLAGRGKAQLNLTDKAHKNGFEVTLLYVALRDKNLAIQRVNERVQKGGHGVPVATIKKRYQQSKHNLPLVAFKSDKVMIYDNSEKFTSVYAREKGQVFKNDLRHFPWINQNITYPEKVQKQLQNFADQNPEVKPKNDP
>NZ_CP014928.1|WP_065937756.1|4593_4872_+|hypothetical-protein
MSNQYEKLVEQQARLKQKIEREDFKLRQSKHYENRQARKARSRRLIQKGALLEKYFQANNLSVEQTEELLKTFADYVNAHKPNKLKNDQPNN
>NZ_CP014928.1|WP_065937755.1|4361_4571_+|hypothetical-protein
MSQSNLEKQEAKLKALNQKIKDEKNNIEQRIGKQIISQSNLDYANLSNDQIKILAKQFSEFLKVKSVDH
>NZ_CP014928.1|WP_065937754.1|2027_4091_-|MobA/MobL-family-protein
MAIFHMSFSNISAGKGRSAIAGSSYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWNEVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNRPFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIPDRISEKSFIEEGIDDTPTQHEGINSKRHERKEFNQQVKNYRKSKAGYKNNQEKVINRGHLDSLSKHFSFNEKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLAQQLLTFTKRPYVGFKLLMQQEKKVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIKTQYHEVLKRAFPKGDLDELPMTKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQLENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQMQLKEQQAKDDQYRKANIGHYQPLNYKPVSPDYYLKTAFSDAIMTVLYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHEDGGMHL
>NZ_CP014928.1|WP_083215617.1|394_1999_-|type-IA-DNA-topoisomerase
MNGSPLYTLLLRQNGVRGVYSIGRVQTPTLYMVYQRDQAIKNFKPEPYFELNAEILANQQKFVAKLDPYQRFKDEAGLITFMQAKRVQKGSQAGLIKDVQKQGKKRASPQLFSLSSLQSAMNKRYHASASQTLAAIQSLYEDKLLSYPRTDCAYITDEEFEYLVANLTKYLGLVSKQVAVTNTTPNKRYVNGKKVEEHYAIIMTKVVPTKEKLASLPKLQQQVYDLVLKTTLAMFADPYEYEETTIITQVGDANFKATGKVPTKQGWQALFDDHKAEQQEAATLPIVHQGDQVKANLQTPQKETTPPVPFTEGTLITAMKTAGKTLDDEEAQAILKDVQGIGTSATRANVLEVLKKRGYLVTEKNKLHVSEAGITLCKAVELEPLLTSPEMTAKWEQALQQISTEERTPDNFLSQIKKFVTKLIADVPTQLTGSAAIKQQINHQQQAQKSAEVFLETPQATVLNKQKFYIVKPKQDEDFTLPKKWSSKTLGKTAIKALVTKGETSKLKGFKSKKGKSFDAKLKLDGHKLSFDFD
>NZ_CP014928.1|WP_003679901.1|57_273_-|hypothetical-protein
MNNELAVLASELPVLQAKGTYKYLKEITGNGAYYQVAWQKLSDGYVALYGTTPIQIRSLPTLNDIFEDEEG
>NZ_CP014928.1|WP_014386873.1|7868_8249_-|hypothetical-protein
MKTQLMDYWLYLYLGCIYLVPLFRIIKLNNNDTRFMLRKLLFPLEYLIQVKAEQAFNNSRSATRLIHILIFPMSVLGLVGASMPLVSLNEPMMKHTAILVFITYYCMLAPITFWFQPKAGKIYKTK
>NZ_CP014928.1|WP_014386874.1|8312_8612_-|hypothetical-protein
MTKREFKKAVDTNKLSGLSQPKKFMESDTDNKQWNDYLEAIKQEQENYEQVLYSVAVEPSLKEAIKIAGKNRGRVKGGAKSIVRDAMTSYFDKHPELFE
>NZ_CP014928.1|WP_014386875.1|8613_9381_-|ParA-family-protein
MAKIIAFYNNKGGVAKTTTATNVAGVLSLQHKRVLLIDGDPQGHTSLTFGVDADDLQTTLGAYLSSGWDAKQASDYFINVNDYLDVVPSNQSLSDFIIAVSGEDPKFRNKHLKNFIDPIRDEYDYIIFDMAPAVDIILENIVEIVDDLTVVAVPETYAVKNAETTLKITDDKQVIVRHIVPTKTQLNTNTHKFMLENLREVAEAHNIKMTDTFIPNLIAFAEAVSIYELPLALVKDNHYKSAQKYYQNLVKELGY
>NZ_CP014928.1|WP_014386876.1|9462_10023_-|recombinase-family-protein
MKYGYARVSTTDQKLENQIDSLKNSGAEIIYQEKFTGTTTERPEFNKLLNELKTDDTLIVTKLDRFARNTREALDIIQDLFKRDIKVNILNMGIIDNTPTGQLIFTIFSAFAQFERDMIVTRTQEGKIYAKTHDPYFHEGRPQTYTDEQIRLAYELRQQGMTYRMIARKTGISERTQQRRFKKLNK
>NZ_CP014928.1|WP_014386877.1|10421_10598_+|plantaricin-C-family-lantibiotic
MKKNLMKSAEESSGNVLEELNNAQLGMISGGKKIKKSSSGDICTLTSECDHLATWVCC
>NZ_CP014928.1|WP_065937758.1|10677_11331_+|hypothetical-protein
MVKKTDSVQGQIEKAIGTDVLQLAMDNLSKFKQPVEDIVYLNRLEEDSLLLVRNDYDSKKLYFLNHKKVIFSSFYDRLFFIAQNLLKKEYPECIKILSPHAQKMFLNSVGEKLDLICTRTLIYEMHIQNHLGNLNGVTPEDQYLSFNKEILGTNDEFIRILNTYSVMKTAIFSLIGGALKNLDFMIKHFLQDKELIMSQFGVKENIKKINDLSVKFI
>NZ_CP014928.1|WP_191982566.1|11362_12226_+|DUF4135-domain-containing-protein
MTLDDNKEIIYKPRSVNTEIIYQKILSHFIKVTPSSKKSLYYPIIDKKEYGWSVFVDHKNCKTEQEVSSYYYNFGIISFVNMLLNTDDLHFENLISSDEYPVLVDVETIMSNDINRIDFSNAGSIISHLLNSTVLRSGLLPTFVSFGGDNEGFDYSAINGEKDVELPYKVPRIENMYRSDMRIHYVHPHMHNENNQVRLKQTVVNPHRYVKEIVKGFCNAYKKAISLKETLISDLEFFNGIQSRILLKNTQQYSMVLRTSYHPIFFAKCTRKNKVSAFYRKKYRYKF
>NZ_CP014928.1|WP_083215619.1|12158_13772_+|type-2-lantipeptide-synthetase-LanM
MQNAQERIKFLHSIGKNTDTSSEQGKFILYSEVQDLLNNDIPYFYSKPKSKKLYNSMGDCINFFGDTAYSVIKKRIKNLNIEDMNFQRFIISLKISSPTPEMRVKEKRQTTLNFNKETANLVYSHDIFDTAAKKILDNLYNRAFISKKNNDVNWIQAVLSTEADNSWEISKMGMYLYDGIAGIAIFVNAFLAQNQNFLDKKYLQLKIALDNTLFKYVDQCLFDKNFFDDKSLGAFYGESSIAYTFQILFRITQNKLYFEYARKICDHLPNQVENDDICDYLLGSAGAINVFVNMFELTGNKKYLNISMSLLDHIEKSARVAFPDNSIAWKSDMASDPLAGLSHGASGFILSFSRLYKATKDKRILDLISNTLNFEDKLYDHNLHNWRDNRIIQGQRNYKNNINPVAWCHGSSGILLARLAVKRNCANVNNDLVERDIRLAIDSIKRMGNRDQNCLCHGSFGNVLCLLEAQDELTIQDQKDLEIIKLKMAKKVLEGHWSCGLPPQYENTSFMLGISGIGYALLKMNNSKLPNVLSLEI
>NZ_CP014928.1|WP_056986427.1|13826_15986_+|peptidase-domain-containing-ABC-transporter
MRKHRIRLINQFSSSDCGLACILMIFKSYGYNKNLYNLIATVRPSRDGLTVAQLKTISKDNQFDLKAFKFKSRKSLIQNLPAILPTKDGHYVVISSVKKNVFTVLDPAEGVQKQSFQDLQQNCLPVLCIITPLPSFSKQTKFHGFIPSNKGILGSFNFKKSDVFITIFCTVILEAIVLIIPDIIKRIVNASVKTDINIQQVLIVLCLIIISFFVLNLLFTWIRQWVVLRMQTSVFKQVIDKLLEKLFSIDLTFYETHSTGDILNRFNNISMINNFLSTFLIKMFIDILTGIVCFIVMLTISPLLTTSIILIGAFEGILIYSLNSKLHSKTQEYITTQTQAQDNMADVFNNIIQIMCMGSQDKLEKDLENKYFKSIDSFREKGSLNNTLQSWLDSISVITNLLIYTLGFFLIQKGQINIGTLIQFVSLSSFAITPINSTIGAIPQIKVIQEITNRLNEIMFYKSVSRNGGTEISAINDIEVSHVSFSYSQTTNLDLRDISIKIPKGKRIAIVGNSGGGKTTLTKLIMNVFDDYSGSMYVNGVNYRKLNSASLYDKISVVTQTPLAINGTIKDNLDFGNKLSDSQLEDCLKNAEILDFVKQLPLGINTVMGDNGQNLSGGQKQRIAIARAISKNPELIIFDEGTNSLDQLTEQKIYHNLQSLNITQLIISHRLAAIQDADYIYVLSHGEIIEEGIHDELIAKKGLYYRNFLDNKQIEGRES
>NZ_CP014928.1|WP_014386880.1|15985_16930_+|ATP-binding-cassette-domain-containing-protein
MDLNNDYVLRTDHLTKIYGPQISVKNLSIHVQKGKIYGLLGKNGAGKSTTMKMILGLIKPSSGTYSLFGKDMSKITNSELKSIFSKVGNTIESPGFYPNLTGTENLRIFAKLRKLPEKTIESSLTKLGLPYKDKKLFSEYSLGMKQRLAIANATMNSPELLILDEPINGLDPEGIVDIRKLLIDLSQNQGTTILISSHILSEMQLIADDIGIIANGALLVESKLQDLIEQNSNSFVFKVSNSANAAKILEQQFKIKDIVITNQQKLSISHAITDSAAIIKAFIMNGIDVQAAYLKEGTLENYFESITNGGASHE

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Crispr_ID: NZ_CP014928_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014928_2

27205-27307

Orphan

Consensus_repeat	Method
ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014928_2

>merge|NZ_CP014928|2|27205-27307|CRISPRCasFinder
ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTTGAGCGTCCTTTTCAACGGTGTCATGCTGAACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT

>NZ_CP014928|2|2|27205-27307|CRISPRCasFinder
ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT	GAGCGTCCTTTTCAACGGTGTCATGCTGA
ACTGTAGAATTTACAGTTCTGCGCGCAGCAAGGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014928.1\|WP_011373852.1\|19483_20404_-\|IS30-like-element-ISLsa1-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP014928.1\|WP_014386871.1\|26162_26444_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_CP014928.1\|WP_065937772.1\|18842_19229_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_065937766.1\|33009_34653_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NZ_CP014928.1\|WP_003555660.1\|24735_24963_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_014386882.1\|17662_18400_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378937
NZ_CP014928.1\|WP_065937763.1\|28957_30007_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_CP014928.1\|WP_191982565.1\|32026_32929_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|376794
NZ_CP014928.1\|WP_010620892.1\|25930_26116_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_065937764.1\|30139_30727_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP014928.1\|WP_065937765.1\|30867_32034_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_014386870.1\|25253_25934_-\|zeta-toxin-family-protein	unknown	unknown	gnl\|CDD\|226648
NZ_CP014928.1\|WP_065937761.1\|20866_22042_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP014928.1\|WP_081036094.1\|18499_18637_+\|putative-holin-like-toxin	unknown	unknown	gnl\|CDD\|319017
NZ_CP014928.1\|WP_083215621.1\|39128_40262_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341187
NZ_CP014928.1\|WP_065937768.1\|35995_39136_-\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP014928.1\|WP_065937767.1\|34649_35918_-\|SIR2-family-protein	unknown	unknown	gnl\|CDD\|379106
NZ_CP014928.1\|WP_065928812.1\|28679_28955_-\|dihydrodipicolinate-reductase	unknown	unknown	unknown
NZ_CP014928.1\|WP_014386869.1\|24985_25264_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014928.1\|WP_065937769.1\|40251_41778_-\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363

Protein	Function_ID	Function_description	E-value
NZ_CP014928.1\|WP_011373852.1\|19483_20404_-\|IS30-like-element-ISLsa1-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.37768e-76
NZ_CP014928.1\|WP_014386871.1\|26162_26444_-\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	1.00264e-10
NZ_CP014928.1\|WP_081036094.1\|18499_18637_+\|putative-holin-like-toxin	gnl\|CDD\|319017	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox). Hol_Tox is a family of small proteins (34-48aas) with a single TM region. Members can exhibit antibacterial activity against Gram-positive bacteria but not against Gram-negative bacteria.	1.32931e-11
NZ_CP014928.1\|WP_065937766.1\|33009_34653_-\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	7.14403e-14
NZ_CP014928.1\|WP_014386882.1\|17662_18400_+\|ABC-transporter-permease	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.45452e-18
NZ_CP014928.1\|WP_065937763.1\|28957_30007_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	1.99075e-49
NZ_CP014928.1\|WP_065937768.1\|35995_39136_-\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	0
NZ_CP014928.1\|WP_065937764.1\|30139_30727_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	5.89073e-44
NZ_CP014928.1\|WP_191982565.1\|32026_32929_-\|DNA-protecting-protein-DprA	gnl\|CDD\|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	2.84814e-61
NZ_CP014928.1\|WP_014386870.1\|25253_25934_-\|zeta-toxin-family-protein	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	1.04185e-38
NZ_CP014928.1\|WP_065937761.1\|20866_22042_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	7.1823e-108
NZ_CP014928.1\|WP_083215621.1\|39128_40262_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341187	cd17496, RMtype1_S_BliBORF2384P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Bacillus licheniformis S subunit (S1.BliBORF2384P) TRD1-CR1 and Chlorobium tepidum TLS S subunit (S.CteTORF675P) TRD1-CR1. The recognition sequences for Bacillus licheniformis S subunit (S1.BliBORF2384P) and Chlorobium tepidum TLS S subunit (S.CteTORF675P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. This subfamily of TRD-CR's shows similarity to TRD1-CR1 of Aminobacterium colombiense DSM 12261 S subunit (S.Aco12261I), which recognizes 5'... GCANNNNNNTGT ... 3'. This subfamily may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	1.03789e-59
NZ_CP014928.1\|WP_065937767.1\|34649_35918_-\|SIR2-family-protein	gnl\|CDD\|379106	pfam13289, SIR2_2, SIR2-like domain. This family of proteins are related to the sirtuins.	2.18288e-07
NZ_CP014928.1\|WP_065937769.1\|40251_41778_-\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	1.23294e-129

>NZ_CP014928.1|WP_014386871.1|26162_26444_-|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MAVKEKKRVQVQIDKELADNTEAVLSQLGLNPTTAINMFYKRIVADAALPFKPALSEAERANLSLLKVTKETPVTEFKDAKEVADWLNDPDED
>NZ_CP014928.1|WP_010620892.1|25930_26116_-|hypothetical-protein
MKDTITINDFFEIAKETDLKDLLDKSLHEPDPEKRKVYDALYTYFLDKRQDEVIKRKDFVR
>NZ_CP014928.1|WP_014386870.1|25253_25934_-|zeta-toxin-family-protein
MIDKPQYIIVAGINGAGKSTLYDTFPILFDKTKRINADELLRQMGGDWHKDSDNLKAMKEEIKQLHYALDHQQSIHVETTLAGRGKAQLNLIDKAHKNGFEVTLLYVALRDENLAIQRVNERVQKGGHGVPVATIKKRYQQSKHNLPLVAFKSDKVMIYDNSEKFTSVYAREKGQVFKNDLRHFPWINQNITYPEKVQKQLQNFADQNPEIKPKNDPENKNDRPSY
>NZ_CP014928.1|WP_014386869.1|24985_25264_+|hypothetical-protein
MSNQYEKLVEQQARLKQKIEREDFKLRQSKYYENRQSRKARSRRLIQKGALLEKYFQANNLSVEQTEELLKTFANYVNAHKPNKFKDDQPNN
>NZ_CP014928.1|WP_003555660.1|24735_24963_+|hypothetical-protein
MIGGIVMSQSNLEKQEAKLKALNQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKQFSEFLKVKSVDH
>NZ_CP014928.1|WP_065937761.1|20866_22042_-|IS256-family-transposase
MNELTTEIIAALAQKQDLGEVFRHHLEIAINQLLQTELAEFLGYERYSYAGINTGNNRNGSYERSFDTKYGQLNLTIPRDRNGRFENHTLPAYGRHSDNLETTVIQLYTKGITTAEIAELIEKMYGAHYSQATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRDTVQKEAVHIAIGIRPDGTKEVLNYQVAPTESTGIWTELLGTLIKQGVKDVLLFVADGLVGLDEGLNRHFPKAKRQRCLVHVGRNLMNKVRVKDRKAVISDFKQVHRAANREAAELKLNEFANNWHQTYPKLIKDLLKMPNLLTFMDFPPAIRQSLYSTNLIENFNKHLKRTTHHKEQFPTEDSLDRFLVSQFNVYNEKSLKRIHRGFKGLQDTLEASFI
>NZ_CP014928.1|WP_011373852.1|19483_20404_-|IS30-like-element-ISLsa1-family-transposase
MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYDPELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLSTASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVNQRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNTAFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIERFRACSD
>NZ_CP014928.1|WP_065937772.1|18842_19229_-|hypothetical-protein
MASTKLIQGTTKSCGCQLRKAREKWKNIYKDEKIQEKIKTTFRQNDGREKNTKLSILKLSVGDKLKANNASGITGVSYSKRDKRWRSYITVKHIRYELGYFKDKESAIQARKKAEKELVEPILKKYKN
>NZ_CP014928.1|WP_081036094.1|18499_18637_+|putative-holin-like-toxin
MNSHSRKGVAQVSISDALQLMLAFGTFIVALIALVVELIKNQQKK
>NZ_CP014928.1|WP_014386882.1|17662_18400_+|ABC-transporter-permease
MGTLIINEFRKLKRCDVLLVFFISLVFTDLLSIFQLYSGNEHSLYNYTDFMNIVIWDSFSLVLPAMIVIFSNYLINVEHISGALKNNITCAVSVNKLYVSKLVALCLINVVFAALNAFLTYLIFLFLPHKSEPIYHSLISMIQLIGISLGVFIAVLPILILFIRQASSYLNVVIAFVYGFVGVFVAGQNLQDYYPITAFLKIVNYNNGSLTYHGNTSYITVFIVLLFSLIAWIFMAQKLKKADYA
>NZ_CP014928.1|WP_065928812.1|28679_28955_-|dihydrodipicolinate-reductase
MGKVKTLNVRLNPEKIVDKEILDYFDKSLIPKTTLVKTALIHEIERLKAQGDPYVKDELKAPKTPKNSTESPSDSKERLQGGFNAFSDNDI
>NZ_CP014928.1|WP_065937763.1|28957_30007_-|ParM/StbA-family-protein
MDIFSLDLGNKQTKLKSSKAEYVLPSRYLNQADMPMSVGNSTMNNDLHTYSVPFSDDKYVWGRDIDRLHLDEYLADTIMYGARYDSEAFKLLANFALGLLASDFKAAKDQVLEVVVTAGLPTGDYADQGQLKALLKVLEGQHQATIDDKIVTVRVRKVYILPQPIGTLYNELLDDEGFIQNKDLLDEKVGIVDVGGGTILIDTILNFELSGKNRHQFNTGVNDLYEAIANGINGDTSLYQLEKDLRKGNQQHHWSYRFSKNRQDDITDLVCKEIDRFTRRLVANVTSTLKNLNSIDTLFFTGGGANLLNQKILNTTFTNAVIVKNTEVANVNGFYKYGLSQQAQNEGSK
>NZ_CP014928.1|WP_065937764.1|30139_30727_-|recombinase-family-protein
MAKIGYARVSSKEQHLDRQIAALKGVDKLFTDKLSGANTNRPELQKMLAYIREGDIVMVTELDRLGRNNHDLTKIMNSIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKQQGKYHGRKPQYTQDDPRLQHAFQLYQAGMSDVDIARTTGIKRTTFIRYRKKYKIKRK
>NZ_CP014928.1|WP_065937765.1|30867_32034_-|hypothetical-protein
MIKIFFSDKVFIDSNDKVRAGAIDFINFALNSDIAMIYVSYKTEKQLKDKPIISLLLNFYNIPVNQDKIKVINRKNIAKCTDDCKKNIFLGVKDVDLFNATASKILLLYPTWATTNETRCKQYGIPISDFKSLEKLITIIARQKTFYYSLKVDERTTVYALTSANNYGATINENEAINKLHETLKNGDPSHLQAIMCYLLAGIMSHDDLKSTDIWGIMPSSGTTLNKEMMAIKKQCRYLTGKKLSKNILLRHTETSKSHGTSRDTRLFIGAKKHLDTMILNPYYKDKLANKTVTILDDYVTNGISFEAARNLLEAENVKQINFVAIGRFRSRMSNGLGIYQKESYSLAKDLFSANTSAQLTKRDKDFGMNGKYDESAHADLADLAKLF
>NZ_CP014928.1|WP_191982565.1|32026_32929_-|DNA-protecting-protein-DprA
MDIEKNYKFYFFWLYHLGISKQTLSQIKNKLNEKDLVNIYNGHYLDYAISSINFSQQDLQLLSNDTKFKLSKKDARSITQKFNKVGVKVTFFYDYDYPTSLRNIPNPPFVIFTRGNYSILTNKDKLISIAGSREISDASAEYLRRTVRDLVRGGYGTVSGLALGTDIIANKSTYLANGYTIAVLPGSIFSIIPKSHSVYADDILKKNGLLLSEYYTDHFSKNNYIQRNRIISGLGKCLLLTEFNEHSGTIHTARFAWLQRKKIFCFSNNSSGVKKLIGLNIATPFRNISDFKWIRGEIND
>NZ_CP014928.1|WP_065937766.1|33009_34653_-|ATP-binding-protein
MNADEYYLDIDKENFYLGIISQVFRGNSYVQVENLSLLRDRKIHNEVLIPNTINYFVVIEDTQGLFIGEVFQSKVQDTDVVNQAINRGQIDHVFPEIGIDIIGCMNPQHSFQLPGFRTVGINDKVYIANTKIVKAYQASLEILSNVASNDQKIQEPLQNLATFANFPGMTFSVKPNTLFDRHLLVIGSTNSGKSTSALSIMDKLINNKIKLLIIDPTGEYHDSFPESNVEHLTLGENAFLPVGDVTMSQWELLFQTNDNTQGAVLSDAIRSLRFNYKENNKNEAYHKSGKKVTEVERDLSSISNTDTTFNLLKLPEQIIEESVELNTQKGHTDEYVFRNFRANANAWLEQKIQHQFQYSSLTQFFTEGSEGSKLLRKIDCFCHQRETSLYIDASKIGLSDGIGTMIIDLLSNYIINKPVKSLKPFVLFVDEVHRYTQFQNELTSSFSGLINIAREGRKKGIFLFLTTQSPCDVPKTLLSQIGTLLIHRLTSIEDLQLIRNHLDEHSQKQIINLNQGEALLTSINLLKDVQLNFAKSDRTHYNQTPLL
>NZ_CP014928.1|WP_065937767.1|34649_35918_-|SIR2-family-protein
MIKIRYFESHKLNLSADEKEYYLNDEPLKVQDSDSTKKRDYTKSEFDTEISKAVSQFVNRSFEHIVLLLGAGASVVKNEEGEIDPEYGKTVAMIAEQVLGQLSSKKYKLPNFNDPSVKISTDVFTLEEMAKDIGYCDNIICTNKYGKRLDPQFNLETFLSRLKTYTQFVKTDQQKWEDSQNAIFDIIKQATSYEYDKSKFKHKALINILSKKLLPENKLSIITTNYDTLIEDAAESMNYTVFDGFSFSRTPKFDDDMFEWHLSKHVSNVKTRENIYKKQVIDLLKIHGSLTWRRDGKDVIRLNKKAPGKTIMIFPSSDKYMQSYEEPYFELFARFQDLLKQPNTLLITTGFSFADNHISRMIIQAISHNPSLSTLIADYSLNPVDPNKNWEILHDMLHDTYPIVFLKATLNEKLTDYLGGIE
>NZ_CP014928.1|WP_065937768.1|35995_39136_-|type-I-restriction-endonuclease-subunit-R
MPKIQPFTNEQDVEEGAIDLIVSLGYTDLRSAEYNRPNIQVDSERDNDHQKIVLEPRLMTAFKQINPGLPNFVYTEALRQFKSIPDGPDLMANNHHFHKLLIEGASVTENKNGQPHTYSVKAVDFNNIAVNDFMVTNQFTMKQGGHNRRPDITIFINGLPVVIFELKNQANENVGIEDAYNQLQTYKQDISDYMAYNEVLIASDGVNARTGSLSAGFDRFMQWRSPDHRDSDLPDSYELETMITNMLKPAVILDLIQNFIIFESNDAKTSKILAAYHQYYMVNKAVDRTAETLQDPQNNRIGVVWHTQGSGKSLSMVFFSGIVSRKLGNPTILVINDRNDLDDQLKQTFSAAHDYLRQTPKQAKSRTDTRDLLATNSGGIIFSTIQKFSPEDGEDAMPVLTSRSNVIVISDEAHRSQYGMKARYTKDGVRYGFAQYLRDSLPNASFIGFTGTPINIDDKSTTGVFGDYIDVYDMTQSVRDHTTVRIFYENHVIPLDADPEVQHKYEALIDEAGQDDPGITDDQKRKADFTSLERLAGATSRLKALAKHFVHHFEAHQAVQFGKAIIVETSRRNAVKLFNEIVKLRPLWYSDDLTKGKIKIVMTSDTAADGPELAKHHTNAKQRRALQQRMKDDNDELKIVIVVNMWLTGFDAPSVNTMYVDRPMHGHNLMQAIARVNRVFRDKDGGLIVDYIGIADSLNQALRHYSKNDRDQAGINVDKAVSLMKSKYDIIINDYLYGVNYSGYNSAIRSKRQESYRLALDAVVSLDKEQQKKFADTVVQLQKVYALVVTSRQAQAISSEVAFFGAVKSALIKVMQAVSPHDNPVTNRELNLRLDQLVNQSVIAKQPVDLYKELGLERPELSLLSEKFLDSIQNMPEQNLAVKLLERLLKGKVKALTKVNLIQSRRFGDMLENNIEALNQRGVTTEIVIRKLIELAKNMQETEAAGESLGLSANEQAFYDALCDQKTAVQVMGEDTLQEIAKELVGTVRKYASTPDWVQRKTTQAAMRQAVRRMLKDHGYPPTFAPAAVDTIIEQAQTMAFEANHQ
>NZ_CP014928.1|WP_083215621.1|39128_40262_-|restriction-endonuclease-subunit-S
METRTVRLGDFATFVNEKCYLNEASRNTYVSTENLKPNRLGVFFPITKLPQTNKVNTFAKGDILIANIRPYFKKIWHANIAGTHSTDVLNIRSNSKQLLQSYLAVVLSDDRFFDYMMATSKGTKMPRGDKKAIMDFKFELPSFKDQIIVSDSISVINQKIELNRQINKNLLRLCRIQFDRVKLACSSTTDLSNIAVLMMGQSPKGNTYNQKGEGTPLLNGAADFRGGINPSKYTSDPKKVTKPGDYVFGIRATIGLTTKVFDCYAIGRGTGLARSLNSEFDELLYFILEDSFDYFAHAATGSVYLNISRKDFETYSAPAFSGHSQKVFHDFASPLMEKIYQDETQNKKLTQIRDILLPKLLSGSVDLSGIEEAMKNA
>NZ_CP014928.1|WP_065937769.1|40251_41778_-|SAM-dependent-DNA-methyltransferase
MPVKSNELGIEDKLWSAAEKLRGSMDASTYRNVVLGLIFLKYVSDTFEELHAELLASNYPEEAEERDSYDAKNVFWLHSEARWSVIAAAAKTPEVGTTIDKAMTAIERENSSVKGVLPKNYASPDLAKENLGEVIDLFSDVQVGNEESRKNDVLGRVYEFFLRKFATNGDGEFYTPRSIVRTLVDMIEPFKGSIYDPCCGSGGMFVQSEEFVREHQGTILDLSVYGQEWNPTTWRLAKMNLAIHGIDNNLGPRNGNTLLNDLHKGERFDFALANPPFNVKDWGAEKVIDDSRWRWGTPYDGNANYAWIEHILSKLTPDGKAGIVLANGSLSTSTSDEKAIRQALLEDHKVDAIVAMPSQMFYSVSIPVSLWIFDMNQASPNERDRQGETLFIDARELGSMTDRTHREFTRTDINKIADTYHAYTGASKKAYQDVPGFCKAEKLENIKANDYVLTPGRYVGLAAEKQMSEEEFDAEMTKLSGELKKQFDKSDQLQNKILNVLRGIGYGD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NC_017017	Pediococcus claussenii ATCC BAA-344 plasmid pPECL-6, complete sequence	5387-5416	0	1.0
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP014928	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence	6824-6853	0	1.0
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP047125	Lactobacillus hilgardii strain FLUB plasmid unnamed4	5237-5266	0	1.0
NZ_CP014928_2	2.1\|27242\|29\|NZ_CP014928\|CRISPRCasFinder	27242-27270	29	NZ_CP014927	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence	35572-35600	0	1.0
NZ_CP014928_2	2.1\|27242\|29\|NZ_CP014928\|CRISPRCasFinder	27242-27270	29	NZ_CP014928	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence	27242-27270	0	1.0
NZ_CP014928_2	2.1\|27242\|29\|NZ_CP014928\|CRISPRCasFinder	27242-27270	29	NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	38859-38887	0	1.0
NZ_CP014928_2	2.1\|27242\|29\|NZ_CP014928\|CRISPRCasFinder	27242-27270	29	NZ_CP014918	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-3, complete sequence	5597-5625	0	1.0
NZ_CP014928_2	2.1\|27242\|29\|NZ_CP014928\|CRISPRCasFinder	27242-27270	29	NZ_CP017263	Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.22, complete sequence	23049-23077	0	1.0
NZ_CP014928_2	2.1\|27242\|29\|NZ_CP014928\|CRISPRCasFinder	27242-27270	29	NC_022114	Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence	633-661	0	1.0
NZ_CP014928_2	2.1\|27242\|29\|NZ_CP014928\|CRISPRCasFinder	27242-27270	29	NZ_CP031201	Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_C, complete sequence	6996-7024	0	1.0
NZ_CP014928_2	2.1\|27242\|29\|NZ_CP014928\|CRISPRCasFinder	27242-27270	29	NZ_CP019324	Lactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence	27911-27939	0	1.0
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP014920	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-5, complete sequence	12632-12661	1	0.967
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NC_017468	Lactobacillus helveticus H10 plasmid pH10, complete sequence	15844-15873	1	0.967
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP033891	Lactobacillus plantarum strain LMT1-48 plasmid p_3, complete sequence	3330-3359	1	0.967
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP031200	Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_B, complete sequence	39624-39653	1	0.967
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NC_008498	Lactobacillus brevis ATCC 367 plasmid 1, complete sequence	8762-8791	1	0.967
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP014874	Lactobacillus backii strain TMW 1.1989 plasmid pL11989-1, complete sequence	6854-6883	2	0.933
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP027191	Lactobacillus sp. CBA3605 plasmid pCBA3605-1, complete sequence	29359-29388	2	0.933
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP027195	Lactobacillus sp. CBA3606 plasmid pCBA3606-1, complete sequence	30409-30438	2	0.933
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NC_006529	Lactobacillus salivarius UCC118 plasmid pSF118-20, complete sequence	4742-4771	2	0.933
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NC_015421	Lactobacillus buchneri NRRL B-30929 plasmid pLBUC03, complete sequence	1005-1034	2	0.933
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP014900	Lactobacillus backii strain TMW 1.2002 plasmid pL12002-1, complete sequence	28835-28864	2	0.933
NZ_CP014928_2	2.1\|27242\|29\|NZ_CP014928\|CRISPRCasFinder	27242-27270	29	NZ_CP018330	Lactobacillus plantarum subsp. plantarum strain TS12 plasmid pLP12-6, complete sequence	18421-18449	2	0.931
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP014913	Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-1, complete sequence	22508-22537	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP019033	Lactobacillus fermentum strain SNUV175 plasmid pSNU175-4, complete sequence	21083-21112	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP017358	Lactobacillus plantarum strain TMW 1.25 plasmid pL125-4, complete sequence	4830-4859	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP017368	Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-5, complete sequence	5770-5799	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP017265	Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.24, complete sequence	26504-26533	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP019982	Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence	10405-10434	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP019982	Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence	86924-86953	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP017960	Lactobacillus plantarum strain C410L1 plasmid unnamed6, complete sequence	6891-6920	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP017960	Lactobacillus plantarum strain C410L1 plasmid unnamed6, complete sequence	20910-20939	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP014934	Pediococcus claussenii strain TMW 2.53 plasmid pL253-1, complete sequence	5933-5962	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP014937	Pediococcus claussenii strain TMW 2.54 plasmid pL254-1, complete sequence	5934-5963	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	MK994179	Lactobacillus plantarum strain PC518 plasmid plp75TA, complete sequence	4885-4914	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_CP011537	Lactobacillus fermentum 3872 plasmid pLF3872, complete sequence	7181-7210	3	0.9
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	NZ_AP014682	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence	515-544	5	0.833
NZ_CP014928_1	1.1\|6824\|30\|NZ_CP014928\|CRISPRCasFinder	6824-6853	30	MN034684	Leviviridae sp. isolate H1_Rhizo_27_scaffold_801 RNA-dependent RNA polymerase (H1Rhizo27801_000001), hypothetical protein (H1Rhizo27801_000002), and hypothetical protein (H1Rhizo27801_000003) genes, complete cds	2054-2083	8	0.733

1. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NC_017017 (Pediococcus claussenii ATCC BAA-344 plasmid pPECL-6, complete sequence) position: , mismatch: 0, identity: 1.0

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcgtcaacgaactttcgcgaac	Protospacer
******************************

2. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014928 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence) position: , mismatch: 0, identity: 1.0

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcgtcaacgaactttcgcgaac	Protospacer
******************************

3. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP047125 (Lactobacillus hilgardii strain FLUB plasmid unnamed4) position: , mismatch: 0, identity: 1.0

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcgtcaacgaactttcgcgaac	Protospacer
******************************

4. spacer 2.1|27242|29|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014927 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

5. spacer 2.1|27242|29|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014928 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

6. spacer 2.1|27242|29|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014932 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

7. spacer 2.1|27242|29|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014918 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-3, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

8. spacer 2.1|27242|29|NZ_CP014928|CRISPRCasFinder matches to NZ_CP017263 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.22, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

9. spacer 2.1|27242|29|NZ_CP014928|CRISPRCasFinder matches to NC_022114 (Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

10. spacer 2.1|27242|29|NZ_CP014928|CRISPRCasFinder matches to NZ_CP031201 (Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_C, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

11. spacer 2.1|27242|29|NZ_CP014928|CRISPRCasFinder matches to NZ_CP019324 (Lactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence) position: , mismatch: 0, identity: 1.0

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgtccttttcaacggtgtcatgctga	Protospacer
*****************************

12. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014920 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-5, complete sequence) position: , mismatch: 1, identity: 0.967

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcgtcaacgaactttcgcgaat	Protospacer
*****************************.

13. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NC_017468 (Lactobacillus helveticus H10 plasmid pH10, complete sequence) position: , mismatch: 1, identity: 0.967

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcgtcaacgaactttcgcgaag	Protospacer
*****************************

14. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP033891 (Lactobacillus plantarum strain LMT1-48 plasmid p_3, complete sequence) position: , mismatch: 1, identity: 0.967

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcgtcaacgaactttcgcgaag	Protospacer
*****************************

15. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP031200 (Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_B, complete sequence) position: , mismatch: 1, identity: 0.967

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcgtcaacgaactttcgcgaat	Protospacer
*****************************.

16. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NC_008498 (Lactobacillus brevis ATCC 367 plasmid 1, complete sequence) position: , mismatch: 1, identity: 0.967

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gtggggtgtcgtcaacgaactttcgcgaac	Protospacer
*.****************************

17. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014874 (Lactobacillus backii strain TMW 1.1989 plasmid pL11989-1, complete sequence) position: , mismatch: 2, identity: 0.933

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgttgtcaacgaactttcgcgaat	Protospacer
*********.*******************.

18. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP027191 (Lactobacillus sp. CBA3605 plasmid pCBA3605-1, complete sequence) position: , mismatch: 2, identity: 0.933

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgttgtcaacgaactttcgcgaat	Protospacer
*********.*******************.

19. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP027195 (Lactobacillus sp. CBA3606 plasmid pCBA3606-1, complete sequence) position: , mismatch: 2, identity: 0.933

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgttgtcaacgaactttcgcgaat	Protospacer
*********.*******************.

20. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NC_006529 (Lactobacillus salivarius UCC118 plasmid pSF118-20, complete sequence) position: , mismatch: 2, identity: 0.933

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcgtcaacggactttcgcgaag	Protospacer
*****************.***********

21. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NC_015421 (Lactobacillus buchneri NRRL B-30929 plasmid pLBUC03, complete sequence) position: , mismatch: 2, identity: 0.933

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcgggttgtcgtcaacgaactttcgcgaat	Protospacer
***** ***********************.

22. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014900 (Lactobacillus backii strain TMW 1.2002 plasmid pL12002-1, complete sequence) position: , mismatch: 2, identity: 0.933

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgttgtcaacgaactttcgcgaat	Protospacer
*********.*******************.

23. spacer 2.1|27242|29|NZ_CP014928|CRISPRCasFinder matches to NZ_CP018330 (Lactobacillus plantarum subsp. plantarum strain TS12 plasmid pLP12-6, complete sequence) position: , mismatch: 2, identity: 0.931

gagcgtccttttcaacggtgtcatgctga	CRISPR spacer
gagcgcccttctcaacggtgtcatgctga	Protospacer
*****.****.******************

24. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014913 (Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-1, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcatcaacggactttcgcgaag	Protospacer
**********.******.***********

25. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP019033 (Lactobacillus fermentum strain SNUV175 plasmid pSNU175-4, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggagtgtcgtcaacggactttcgcgaag	Protospacer
****.************.***********

26. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP017358 (Lactobacillus plantarum strain TMW 1.25 plasmid pL125-4, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcatcaacggactttcgcgaag	Protospacer
**********.******.***********

27. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP017368 (Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-5, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcatcaacggactttcgcgaag	Protospacer
**********.******.***********

28. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP017265 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.24, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcatcaacggactttcgcgaag	Protospacer
**********.******.***********

29. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP019982 (Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggagtgttgtcaacgaactttcgcgaat	Protospacer
****.****.*******************.

30. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP019982 (Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggagtgttgtcaacgaactttcgcgaat	Protospacer
****.****.*******************.

31. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP017960 (Lactobacillus plantarum strain C410L1 plasmid unnamed6, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcatcaacggactttcgcgaag	Protospacer
**********.******.***********

32. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP017960 (Lactobacillus plantarum strain C410L1 plasmid unnamed6, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcatcaacggactttcgcgaag	Protospacer
**********.******.***********

33. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014934 (Pediococcus claussenii strain TMW 2.53 plasmid pL253-1, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcatcaacggactttcgcgaag	Protospacer
**********.******.***********

34. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP014937 (Pediococcus claussenii strain TMW 2.54 plasmid pL254-1, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcatcaacggactttcgcgaag	Protospacer
**********.******.***********

35. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to MK994179 (Lactobacillus plantarum strain PC518 plasmid plp75TA, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggggtgtcatcaacggactttcgcgaag	Protospacer
**********.******.***********

36. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_CP011537 (Lactobacillus fermentum 3872 plasmid pLF3872, complete sequence) position: , mismatch: 3, identity: 0.9

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gcggagtgtcgtcaacggactttcgcgaag	Protospacer
****.************.***********

37. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to NZ_AP014682 (Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence) position: , mismatch: 5, identity: 0.833

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gaggggtgtcgtcaacgaacttatgcggaa	Protospacer
* ******************** .***.*

38. spacer 1.1|6824|30|NZ_CP014928|CRISPRCasFinder matches to MN034684 (Leviviridae sp. isolate H1_Rhizo_27_scaffold_801 RNA-dependent RNA polymerase (H1Rhizo27801_000001), hypothetical protein (H1Rhizo27801_000002), and hypothetical protein (H1Rhizo27801_000003) genes, complete cds) position: , mismatch: 8, identity: 0.733

gcggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cgctggtgtcgtcaacgaacattcgctact	Protospacer
    **************** ***** * .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP014924

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014924_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_1

574978-575121

Orphan

Consensus_repeat	Method
GGCTAACGTGTAACGGACTCTGGCAAAGAAGTCAGGCCCGGACTTTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_1

>merge|NZ_CP014924|1|574978-575121|CRISPRCasFinder
GGCTAACGTGTAACGGACTCTGGCAAAGAAGTCAGGCCCGGACTTTTCTTTGTGGTTCTCTGTCCTCGAGTCGAAACGCGCTCCGCAAGGCACGGGGCTAACGTGTAACGGACTCTGGCAAAAAAGTCAGGCCCGGACTTTTCT

>NZ_CP014924|1|1|574978-575121|CRISPRCasFinder
GGCTAACGTGTAACGGACTCTGGCAAAGAAGTCAGGCCCGGACTTTTCT	TTGTGGTTCTCTGTCCTCGAGTCGAAACGCGCTCCGCAAGGCACGG
GGCTAACGTGTAACGGACTCTGGCAAAAAAGTCAGGCCCGGACTTTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_056987300.1\|566381_567182_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
NZ_CP014924.1\|WP_065901437.1\|588085_592831_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375909
NZ_CP014924.1\|WP_065900954.1\|585907_587290_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014924.1\|WP_054709779.1\|573941_574373_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP014924.1\|WP_065901429.1\|584859_585708_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239796
NZ_CP014924.1\|WP_065911346.1\|580127_581090_-\|2-hydroxyacid-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|240655
NZ_CP014924.1\|WP_056987306.1\|587780_588035_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|366278
NZ_CP014924.1\|WP_056987301.1\|567150_568878_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020
NZ_CP014924.1\|WP_065901402.1\|565270_566380_-\|o-succinylbenzoate-synthase	unknown	unknown	gnl\|CDD\|239433
NZ_CP014924.1\|WP_056987304.1\|582076_582853_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982
NZ_CP014924.1\|WP_065901410.1\|571713_572811_-\|SufD-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|223791
NZ_CP014924.1\|WP_065900954.1\|563565_564948_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014924.1\|WP_054709797.1\|560863_561784_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP014924.1\|WP_065901425.1\|581194_581590_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP014924.1\|WP_162231458.1\|579629_580004_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP014924.1\|WP_083215447.1\|568874_570143_-\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|273127
NZ_CP014924.1\|WP_054709774.1\|578899_579643_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP014924.1\|WP_156773216.1\|570540_571623_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238562
NZ_CP014924.1\|WP_065901412.1\|576652_578035_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014924.1\|WP_083215574.1\|574530_574782_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|225619

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_056987300.1\|566381_567182_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	2.98762e-94
NZ_CP014924.1\|WP_065901437.1\|588085_592831_-\|hypothetical-protein	gnl\|CDD\|375909	pfam18483, Bact_lectin, Bacterial lectin. This entry primarily matches to legume-like lectin domains found in prokaryotes.	1.33296e-08
NZ_CP014924.1\|WP_065900954.1\|585907_587290_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	7.02444e-172
NZ_CP014924.1\|WP_054709779.1\|573941_574373_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.25598e-12
NZ_CP014924.1\|WP_065901429.1\|584859_585708_-\|hypothetical-protein	gnl\|CDD\|239796	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.	0.000238321
NZ_CP014924.1\|WP_065911346.1\|580127_581090_-\|2-hydroxyacid-dehydrogenase-family-protein	gnl\|CDD\|240655	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	2.80434e-179
NZ_CP014924.1\|WP_056987306.1\|587780_588035_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|366278	pfam00746, Gram_pos_anchor, LPXTG cell wall anchor motif.	0.00307958
NZ_CP014924.1\|WP_056987301.1\|567150_568878_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	0
NZ_CP014924.1\|WP_065901402.1\|565270_566380_-\|o-succinylbenzoate-synthase	gnl\|CDD\|239433	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	2.50492e-119
NZ_CP014924.1\|WP_056987304.1\|582076_582853_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	6.16637e-76
NZ_CP014924.1\|WP_065901410.1\|571713_572811_-\|SufD-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.35697e-37
NZ_CP014924.1\|WP_065900954.1\|563565_564948_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	7.02444e-172
NZ_CP014924.1\|WP_054709797.1\|560863_561784_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.63812e-35
NZ_CP014924.1\|WP_065901425.1\|581194_581590_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.91167e-28
NZ_CP014924.1\|WP_162231458.1\|579629_580004_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.3956e-32
NZ_CP014924.1\|WP_083215447.1\|568874_570143_-\|isochorismate-synthase	gnl\|CDD\|273127	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases. This enzyme interconverts chorismate and isochorismate. In E. coli, different loci encode isochorismate synthases for the pathways of menaquinone biosynthesis and enterobactin biosynthesis (via salicilate) and fail to complement each other. Among isochorismate synthases, the N-terminal domain is poorly conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	3.81155e-106
NZ_CP014924.1\|WP_054709774.1\|578899_579643_-\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	1.44206e-86
NZ_CP014924.1\|WP_156773216.1\|570540_571623_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238562	cd01142, TroA_e, Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	5.36072e-95
NZ_CP014924.1\|WP_065901412.1\|576652_578035_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	7.82854e-172
NZ_CP014924.1\|WP_083215574.1\|574530_574782_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|225619	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair].	3.92672e-06

>NZ_CP014924.1|WP_083215574.1|574530_574782_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MLTVKLDADLKEQTETELLNLGLSYQTAIKLFSQAIVKDGRLPFETPSDFFESEHNQLVVRQVVDNLIGCQERSLNSLSKDQD
>NZ_CP014924.1|WP_054709779.1|573941_574373_+|GNAT-family-N-acetyltransferase
MNCHTGSEPWNHAAALFVRMNVFVQERHIAIEDEFDDNDTPDMVYAVCYADNETPVATGRFQVIDATTMRPGRIATLKAYRGQHLGAQIIAALEEVGRNEEFETSLIHSELTAQKFYEKQGYHFVSDVYEEDGVPCVNVEKTL
>NZ_CP014924.1|WP_065901410.1|571713_572811_-|SufD-family-Fe-S-cluster-assembly-protein
MTDAVQDEATLKANLEDAANEHGEPHWFVDRRLAALDQLATLPLPTAQGLTIDEWPLMPLDKIEWRRSDRDLAATIKPDDQQIQLVQLGQKSIINSLPDDLDDQDVVLTDVFTALREHPQLIERRFMSKMIPSTTNRLTSYHLAYLSSGIFLYMPKDVKIDQPIDIELIQDSTRPQPLVSHVFVVAESGSQCQLTIRLATKGDTANTANLLVEVMARADSHLDITAIDALGANTTSYIKRHAVVSRDATVNWHVCEISKGNTIAETTSDYAGSGAQSAIISTAVTDQQQQVAITTAVTDHGKLVGEGTLCGVQLGDSTLASHGDLLPATADTATLKKGLTAPFAEASANVQQQICDAIAGRLSSN
>NZ_CP014924.1|WP_156773216.1|570540_571623_-|ABC-transporter-substrate-binding-protein
MKKNRTMHRLVLGLVSVATLLVVATGCGNSSSSKKSSSSSTSTTKVVTDMSGKKVKIPKKVTRVADLWHANNQVVLLLGGQKKLVATTQMIQQQPWFKTVYPGISKVKAPFAGQDLQVEALLKTKPQVVISSDPGQIKQARNAKLPTVNAMYQNFAGLRKSVNLTADVLGGKAPKVAKEYQKTLTNNINYVKSNLKGVSIKPKVLHIVSTANLDIVDGQNTIVNDWIKDAGGQNALSQKGNMITLTTEQLAKSNPDVIIVGQATDAAARKALEKNPVLSKLTAVKEGHVYGNPQGTFPWDRYSAEEALQVLWAAKKLHPADFKNLNMTTKTKQFYSKYYKYNLSTTQANQILAGENPTTK
>NZ_CP014924.1|WP_083215447.1|568874_570143_-|isochorismate-synthase
MYVLKTQRDLKLNVAQIAAVASTHETRFFFENSQQTTQYFGWQPLTSTTGSFDRVQAWFTQLTIEGDTEMAAILGGFPFEQEPSDETGALSNGFFFLPAVMVQRQADGRFCISVIQETAATAEQMLKETLHQLDTADVLLPAQYHMSTETAVAADAWAAGVQETVAEIKRDRTLKKVVLARQLRVTADRRFAPERVWLNARQQNPEAYHVLLKVNGTAFISNTPERLIKFDHDQFQTAAVAGTAPRGTTKEQDDQLATQLQRDDKNQREHRYVVDTIAATLRTQQAVVEYDTTPQILKNKNVQHLYTPITGTLASNWSPFTLLAALHPTPALGGVPRNQALRVIGQVEHEPRGLFGAPIGYLTFHQTGEFVVGIRSAVLRQASATLFAGAGIVSESVAETELAETQLKFKPMLQTLFGEDEK
>NZ_CP014924.1|WP_056987301.1|567150_568878_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MTNEGLTTYVQTIIDAIAAQGVKQIVISPGSRSTPVALLLMHNAGHDQFSLYVDVDERSAGFFALGMTKTTHEPTLLICTSGTAAANYYPAVIEAQLTHQPLIVLTTDRPAELTNIGAPQAIDQDQLYGNHVKTFVQLPLPAADDTTLRYVSFNVQRTIMAAQATARGPVHLNLPLRKPLMPDLAPVNEPHPKTLTAPVTQAVLTAAALSQLTARLSGKRVLILAGPAESKDELAGVLALAHKGRWPILADPLSQLRQTDDDLLITGSDILFDGAITLGDAQPDVVLRFGATPVSATVIQWLQTFTGQVILVDPNQALADHSLSTQIQLTVTPAILCQALLPQVLPAPARYCQIWQALEAAYRQSVRAIQATEARIPVIMSNKLQDSAIFVSNSMPIRDVDHFYLPNNGHNRIYCNRGANGIDGVVSSALGMAAVSGTPNNYLLIGDLAFFHDMNGLMMAKRHALKVTIIVVNNNGGGIFSFLPQAAAKDYFEPLFGTPQDLDVATVSKLYGAQYERATTAEDLQSYLNETPTGLRIIEVPSDREENTQQHRQLSDALHKVMEDVLENYNTNKSN
>NZ_CP014924.1|WP_056987300.1|566381_567182_-|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MKITTQTSQINVSHSGNGAPIWVLLHGFMGTEIDFEWLKPRLSGSVICPDLLGHGATVTQPETAFSMANQVEALHDMLGQLYPQNVTYNVVGYSMGGRVAIAFAAQYPDLIAHLFVESGRPGLASAQERADRQAHDAQLATQLETTGLTNFVDRWEALPLFATQRNLPAETQQRVRAGRLAQAPQLLAKSLREMGTGSQPDYWSSLATFTFPVTLITGQQDEKFTKLADAMMTTLPNAQHRVVTNAGHNVHLEQPEAFLDILTGGD
>NZ_CP014924.1|WP_065901402.1|565270_566380_-|o-succinylbenzoate-synthase
MQLASIRMLPVSLPLKQPFTSAHEQLADRHVTLVQITTTDGLMATGELEAFDNPGYNTEMQASEAQVIRGFLVPPLKRNRDISSLNPDDLWPDVSGHRMAKAAVEMTLWSLAAQAEHQSLAALLAAEAKTEQRSEIEVGISLGIADLTQQLQRIAAAQAAGYSRIKLKVGGVADIAVINQIRRQFPTIQMIIDGNGAFTENDAAELQQLDALHVDMLEQPLASGDFAGHAQLQRQLKTPICLDEDILDLKDAQLAVLMGSCRAINLKPARVGGFTKALAILDYCQQHHIQCWVGGMVESDLGRYYSQSLARLITLSYPGDVGPASQFFETQVSDRVVKLTDGKLKLPEEAPRLLPAYQKQMMLQENLLG
>NZ_CP014924.1|WP_065900954.1|563565_564948_+|group-II-intron-reverse-transcriptase/maturase
MQQPQNTEKADRRRTVGLEAQEQVGVRSTDSGENTMMNGTKFQELVLDRNNLNEAYLRVCRNKGAAGLDGMTVDELLPYLRKHKQELLQALQNETYRPRPVKRVEIPKPNGGKRKLGIPTVIDRLVQQAMAQVMVPTFERVFSDNSFGFRPNRSAKDAIDRVVQFYNQGYHYVVDLDLKAYFDTVNHDLLIKFIEQYITDPWILHLIRRFLTSGVMNGGLFERSDKGTPQGGPLSPLLANIYLNELDKLLTSRGHKFVRYADDCNIYVRSKRAGERVLTNVTRFLEGDLKVTVNEDKTSVSSPLRAKFLGFSLGVGRGGAYARPAWQAKQRIKSALRKMTKRNRGVSLNLVFNEIHQKMRGWLQYYSVGKMTNFIRHLDEWLRARIRQYIWKQWKKLKTKVNHLVKLGLSGTSAYTMANTRKGYWRTAHSKTLTYTLTNKRLERLGLINMSKTLQSIQSA
>NZ_CP014924.1|WP_054709797.1|560863_561784_-|LysR-family-transcriptional-regulator
MRIQQLEYLEKIAATGSINEAAKQLFISQPSLSQAMKELEKEYQVQLFYRSKAGITLTDAGREFMNYSRSVLDQVNLLNQHFGQGTVRKRVFSVSAQHYAFVVHAFVELVKEIGGDTYQFTLRETQTENVLDDIQTLKSELGVIYINAFNKTVMMRLIAEKDLEFTPLFDVQPHVFVGRDNPLTAKSHITLADLKDYPYLSYEQGDTNSFYFSEEIQSTLPHKKHIRISDRATIFNLMVGLNGYTISSGIISSELNDEKIVAIPLDVDDTITLGYLRHKKMELSATAQLYLEMLKDHIRGYGFEIK
>NZ_CP014924.1|WP_065901412.1|576652_578035_-|group-II-intron-reverse-transcriptase/maturase
MQQPQNTEKADRRRTVGLEAQEQVGVRSADSGENTMMNGTKFQELVLDRNNLNEAYLRVCRNKGAAGLDGMTVDELLPYLRKHKQELLQALQNETYRPRPVKRVEIPKPNGGKRKLGIPTVIDRLVQQAMAQVMVPTFERVFSDNSFGFRPNRSAKDAIDRVVQFYNQGYHYVVDLDLKAYFDTVNHDLLIKFIEQYITDPWILHLIRRFLTSGVMNGGLFERSDKGTPQGGPLSPLLANIYLNELDKLLTSRGHKFVRYADDCNIYVRSKRAGERVLTNVTRFLEGDLKVTVNEDKTSVSSPLRAKFLGFSLGVGRGGAYARPAWQAKQRIKSALRKMTKRNRGVSLNLVFNEIHQKMRGWLQYYSVGKMTNFIRHLDEWLRARIRQYIWKQWKKLKTKVNHLVKLGLSGTSAYTMANTRKGYWRTAHSKTLTYTLTNKRLERLGLINMSKTLQSIQSA
>NZ_CP014924.1|WP_054709774.1|578899_579643_-|SDR-family-oxidoreductase
MAKDKVIVITGASSGIGEATAKLLASDGNKMVLAARREEKLQQLVSDINANGGTAIYVLADVSKLEDVKNIAQVAVDEFGRIDVWMNNAGLMPLSEFSHGKVSEWDRTIDVNLKGTLYGFDAALPQMRAQESGQFVNIASISAHVSGVASGPYAASKFGVWAASEALRQEEVKSDSNIRVTVVSPGAIDTELPQHVTDPEQSDAMKGFYGSTAIPADEVARSVQFAINTPENTSINEIVLRPTKQFM
>NZ_CP014924.1|WP_162231458.1|579629_580004_-|MerR-family-transcriptional-regulator
MMTTIKEVAKLTGVSPYAIRFYEREGLLDVPRTKSGIRNFDDASVNAVIAIAHYRNVGMSLEGIRQIFANYDDHELSVKLLKDTKKRLDAQISALESTRDYLINKIALHQQIADKERIDKNGKR
>NZ_CP014924.1|WP_065911346.1|580127_581090_-|2-hydroxyacid-dehydrogenase-family-protein
MSKVYLSAKLPEVATEKLSENGLDVSTFAGEGLISHDELLKAVADIDFLITPLSTKVDKAIIDAAPKLKLIANFGAGFNNIDTAYAKEKGIPVTNTPAVSTNAVAEVTIGLILALSHRIVEGDQKMRHEGFPGWAPLYFLGHKIAGKTLGIVGLGNIGSDVARKANGLGMNVQYYKPNQLSDPEERSMKVTYKSFDDLVKTSDYITINAPQTPENHHQFNADVFKAMKKTASIVNVGRGPIIDEAALLDALKSGEIAGAALDVYEHEPEVDDGFKTLKNVILTPHVGNATVEARDAMATIVADNVIAGDKGNKIKFIVNK
>NZ_CP014924.1|WP_065901425.1|581194_581590_+|helix-turn-helix-transcriptional-regulator
MTDLVRGEVQEKLINGVFNCPKEFTLSMFSGKWKINIIYHLGKEGAYYFSEIQRLLPAASHKELSEKLKELAADGLVDRKPVKDQRVTLTPLGETLLPIVNAMYDWGTKRLQELQLAGDVTFGLGEVKNTD
>NZ_CP014924.1|WP_056987304.1|582076_582853_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSKPFIIGIPAEAREFNYAIRNNVNQPEVAAIVKAGGVPIMIPTREPKLMASYIDLLDGLLVPGGPDVAPRFYVEEPHPRLGDTDALLDESGIQLVKLAVEHNIPIMGICRGLQVINVALGGSLYQDIESQFDTPVQQHFQKAPMAQGTQHVSVEEDSLLAAALNGASPILVNSHHHQAVKKVSGALKVTATANDGVIEAVETKNSDLIAAVQWHPETMFQVNDQQMALFTSFMNRVAKWRQAREDGTAPDMIDLSED
>NZ_CP014924.1|WP_065901429.1|584859_585708_-|hypothetical-protein
MKKQLIGLLVGLVFGVVGFTGTQAQAATLWETGTDLMPSTTLLHQSPDYYAQNKAILTKQYNLVGDVARFHHNQIQVYVTQSKLRPFVQTAMTTWNHALGQTVFEFGTATAHQLTVTTKPSQDWDGLITGNIIYLNSTHLQNATYVDEVANTATTRRLTADYLAQKARYNASTGHTRQVAYASATQYYQKLLTAERAAAPTYQAFWSGTMTHEFGHALGLDHTPYLSDRMYAPASSGNVSSPVAGKYTWTGPKDPADTQRQSSSLSFRDVRRAELSQLLGYW
>NZ_CP014924.1|WP_065900954.1|585907_587290_-|group-II-intron-reverse-transcriptase/maturase
MQQPQNTEKADRRRTVGLEAQEQVGVRSTDSGENTMMNGTKFQELVLDRNNLNEAYLRVCRNKGAAGLDGMTVDELLPYLRKHKQELLQALQNETYRPRPVKRVEIPKPNGGKRKLGIPTVIDRLVQQAMAQVMVPTFERVFSDNSFGFRPNRSAKDAIDRVVQFYNQGYHYVVDLDLKAYFDTVNHDLLIKFIEQYITDPWILHLIRRFLTSGVMNGGLFERSDKGTPQGGPLSPLLANIYLNELDKLLTSRGHKFVRYADDCNIYVRSKRAGERVLTNVTRFLEGDLKVTVNEDKTSVSSPLRAKFLGFSLGVGRGGAYARPAWQAKQRIKSALRKMTKRNRGVSLNLVFNEIHQKMRGWLQYYSVGKMTNFIRHLDEWLRARIRQYIWKQWKKLKTKVNHLVKLGLSGTSAYTMANTRKGYWRTAHSKTLTYTLTNKRLERLGLINMSKTLQSIQSA
>NZ_CP014924.1|WP_056987306.1|587780_588035_-|LPXTG-cell-wall-anchor-domain-containing-protein
MVPALASDTGNQTATSHTQRADDQGAVSTMQNDIAGATTHQQATQNETLPQTDEQASAYSMMGLLGILMSFLGLGVTRKKHDTK
>NZ_CP014924.1|WP_065901437.1|588085_592831_-|hypothetical-protein
MKFSRHNQQQQTKVLNDNARFKLYKSKTKWLVSKWVLGVMVVTVAVGIGLSLGMAGTAYADTTVTDVPMDQQATPSEPATGSTDSTSDVTSQEAPVDQPAPQIDGTTTTDTPAEPNSVSTTNENDTLKGDGSETSTTPVDATRPITATDSQSSSEYFTPGESAIKNDGKTSTSKSPTTTADETDGSFTLTQDTVKNKAGNIIFNNDVDMTHDWEMSGSFKFSKDDDATADATDTNADNDSDWGVGFSGWQLGDGAGIVISGATQDQLGLGGDGNAFGIGGVGNSIAAVIDTHYNTQSQTGKAANGVNYTEVADEPVSTASGLDNDPGTLQVIGNRWINKNGHPENGVALDVTGTNGSQDTSAGGAAIRNDGLNQAVVKFVTTNADGSVVTPDVDSEKAYSPSSAVGSSTAANASGEHFVATWKPDLTTLDPTTGTVSGTLTVTWYGNDSDAYKNGFTISTKYTASTNSSIGLISSNGNQTATTVATVDSFTGNVKSQLVTIDYHVNGTDAPELQTSNVSANIGDTLAVSPDGTTASDVNLTLPKLQGYHVSQITLNGQKIAADQVIMTVSRAAADNTLLVTYEPNTIKTTVTVPTTLVQTNGDETSGTVTISDVSGSVGETVTVKHIPGTYTDGNGTVYTTTETTTQGLVNADGSITVKTPVTYTAIPAKDATLTYVDTTTGKTVATKIVSGQEEISSDVPFVTTDDGTYTADDGTVYGLADGQAMNGKITFVDGDADNVTVNLIELTTQSNGTLSVVPVIQIETNGDDSTLSKNVISNSDTGNISFTDTANKTTNTNTWQNDGNSYMVDMTLLPRDDSYDYTNATVKVMDQNGQVIETLTGVDLNDIIDSTTGELKTIFLNVPQGSQLSGAQVLGKTGVTTDDTVVMTGAENGLSDAQKTGTTVIISVPGEEIDYTVYPTHNGGKKLTDPVSEHGRVGTPITIPNIPGYEPANKDQKVTADEVSIVEYTPTEQKVTVVPVLQDVQGETVIKVDDGTDLTVKGSTDSKVDAPKISGYEPTTQVEIPAANGTTTTIVYTPTQQTVTVNPVSSDGTQMVITDGTILTVSGDTNTNVDAPVIPGYTTDQKVKIQSTDGTQTVTYTPTKQTVTIVPISSKTGEPITTDKPLQVTGTTGSTIDMSLIPGYSTTETIQTPTQDGSQNVTYTPNSVTGTVEISNTDGTKITVDGVTGDTDEIVDVTVPLKKGYTSDHDTVKATVGRDGKITTDETVTYTPNTVTGSVKIPSNKGDIIVNNVTGQTDEMVSVEVPKKKGYTVDHNKVQAIINPDGTITPDETVTYTPNSVTGSVKIPSNKGDIIVDNVTGQTDQTVTVEVPEKPGYTVDHNTVNATVKPDGTITTDETVIYTPNTVTGKVKIPSNKGDIIVDNVTGQTDQTVTVEVPEKPGYTVDHNTVNATVKPDGTIKTDETVTYTPSPVTGTVTIPSNKGDVTVDGVTVEGDQSVDVKVPTLPGYTPDHDTISAHLDTKGNITTDDKVIYTPIVTNQPDNSGSGQNTGSNSGDTQNTGTTSTPKNDGQNNQPSIVTPEQSDGSDSTTVQKPTDLASISETVTPIHIASHGAHKGTT

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Crispr_ID: NZ_CP014924_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_2

728832-728917

TypeV

Consensus_repeat	Method
AATAAGAAACTTTAAGTATCTTA	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP014924_2

>merge|NZ_CP014924|2|728832-728917|CRISPRCasFinder
AATAAGAAACTTTAAGTATCTTAAAAGTACAAATGCTATAATACTCGTTAGAAACTAAAAGTCAATAAGAAACTTTAAGTATCTTA

>NZ_CP014924|2|2|728832-728917|CRISPRCasFinder
AATAAGAAACTTTAAGTATCTTA	AAAGTACAAATGCTATAATACTCGTTAGAAACTAAAAGTC
AATAAGAAACTTTAAGTATCTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_065901591.1\|742986_744126_-\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_CP014924.1\|WP_054711609.1\|728936_729539_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP014924.1\|WP_056987979.1\|738568_739399_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|181221
NZ_CP014924.1\|WP_056987985.1\|716505_717876_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP014924.1\|WP_065901574.1\|721221_722607_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP014924.1\|WP_083215455.1\|732618_734493_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274774
NZ_CP014924.1\|WP_054711612.1\|727316_728819_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP014924.1\|WP_056987984.1\|717875_718757_+\|ribokinase	unknown	unknown	gnl\|CDD\|238919
NZ_CP014924.1\|WP_054711619.1\|724198_724744_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
NZ_CP014924.1\|WP_082409340.1\|737179_738349_-\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_CP014924.1\|WP_065901578.1\|724757_725927_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
NZ_CP014924.1\|WP_054708432.1\|719553_720942_-\|flavocytochrome-c	unknown	unknown	gnl\|CDD\|180584
NZ_CP014924.1\|WP_054711599.1\|744427_744853_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|225734
NZ_CP014924.1\|WP_065901576.1\|722943_723894_+\|citrate-lyase	unknown	unknown	gnl\|CDD\|225263
NZ_CP014924.1\|WP_065901581.1\|726436_727270_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|212492
NZ_CP014924.1\|WP_156770451.1\|734592_734751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_056987976.1\|745161_745647_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380311
NZ_CP014924.1\|WP_065901587.1\|740956_742069_-\|lysozyme	unknown	unknown	gnl\|CDD\|119382
NZ_CP014924.1\|WP_065901583.1\|730329_732279_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274774
NZ_CP014924.1\|WP_054708435.1\|718969_719440_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|227348

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_065901591.1\|742986_744126_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.93324e-45
NZ_CP014924.1\|WP_054711609.1\|728936_729539_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.18771e-06
NZ_CP014924.1\|WP_056987979.1\|738568_739399_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|181221	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase.	3.686e-116
NZ_CP014924.1\|WP_056987985.1\|716505_717876_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	8.31824e-38
NZ_CP014924.1\|WP_065901574.1\|721221_722607_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP014924.1\|WP_083215455.1\|732618_734493_+\|hypothetical-protein	gnl\|CDD\|274774	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.	2.26005e-21
NZ_CP014924.1\|WP_054711612.1\|727316_728819_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.76552e-74
NZ_CP014924.1\|WP_056987984.1\|717875_718757_+\|ribokinase	gnl\|CDD\|238919	cd01944, YegV_kinase_like, YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.	4.60124e-82
NZ_CP014924.1\|WP_054711619.1\|724198_724744_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	4.14115e-39
NZ_CP014924.1\|WP_082409340.1\|737179_738349_-\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	6.17856e-12
NZ_CP014924.1\|WP_065901578.1\|724757_725927_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	2.39832e-35
NZ_CP014924.1\|WP_054708432.1\|719553_720942_-\|flavocytochrome-c	gnl\|CDD\|180584	PRK06481, PRK06481, flavocytochrome c.	0
NZ_CP014924.1\|WP_065901576.1\|722943_723894_+\|citrate-lyase	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.42336e-64
NZ_CP014924.1\|WP_065901581.1\|726436_727270_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|212492	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs. Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.01628e-43
NZ_CP014924.1\|WP_054711599.1\|744427_744853_-\|heme-binding-protein	gnl\|CDD\|225734	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only].	7.3566e-27
NZ_CP014924.1\|WP_056987976.1\|745161_745647_-\|nitroreductase-family-protein	gnl\|CDD\|380311	cd02062, Nitro_FMN_reductase, nitroreductase family protein. Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.	5.12464e-18
NZ_CP014924.1\|WP_065901587.1\|740956_742069_-\|lysozyme	gnl\|CDD\|119382	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.	7.88606e-54
NZ_CP014924.1\|WP_065901583.1\|730329_732279_+\|hypothetical-protein	gnl\|CDD\|274774	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.	5.95366e-22
NZ_CP014924.1\|WP_054708435.1\|718969_719440_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|227348	COG5015, COG5015, Uncharacterized conserved protein [Function unknown].	2.84416e-14

>NZ_CP014924.1|WP_054711612.1|727316_728819_-|multidrug-efflux-MFS-transporter
MQTKPQISKATMTVAWVVVFGAMAPLLDSTMMNIAINNLVSSFHSSVTTVQWTITCYMLATGVAVPFSSWLINHFDGKYVFMTGELLFGIGSVLSAISPNIQFLIAARLVQGFAGGLIMPLLTTLLVQTAGAEVMGQMMATVGLPMILGPLVGPVIGGIIIKFLSWHWIFWINVPVTLIALVLIAWKMPNYPAQNKQAKLDLIGTLLLIAATSSMIYGVVKAAHTASFSNHTTVTFLIAGAVALVLYVLWAAIRGDRAVLPLKLFKFQSFDGSVIGLFIAGTVLNGAMLLLPLYFQNVRGMSVIMAALALVPQGVGMLISRPMTGRLTDSIGAKYVVLVSCLITFVGTIPFFWIDQHTSYWVIAAVLLVRGIGAGGILTPLMADSYSGMAGSDVPAATIGSRIVQNIGSAFGSALITTVVTAFSTAHVKTFETHLKAGRYTVADNMLQSFVHQHLVTIRLDAFQYGFLIISIAALVILLPTVLLSNKIKQDAPKPVQNRK
>NZ_CP014924.1|WP_065901581.1|726436_727270_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKQPKVENKIVLISGGTSGVGKAAAISLAKAGAEVIILGHRQSRADAAVAEIQRRSNNPLIWAELCDLTLHSDIKALHERLIDQNIRLDALINAAGGVTLPQTPTAEGVNTSYALNYAATYWLTTELHDRLRKGARVLNVLGLALVAKNQPVLIPDDPSCAGLNGSQVIDAAFSNKMLFTQALAGRYKRDGITINCFNPGLIRTGMGADASAMAKTLRGLYNVPAKSESKLVAKLALDPRYTQTGILYNVWGHPVKMPEAHYTVQKRRDLLAFSETL
>NZ_CP014924.1|WP_065901578.1|724757_725927_+|NAD(P)H-dependent-oxidoreductase
MKFAAIVGTNADFSYNRLLLQYMKKHFKQLADIDVLEINQLPEFDQDLPYEEQSMAVWKFKQAVKNADGVIFSCPEYDHAIPAALISAIEWLFYNPKNILERKPTMVVGVSYGTQATSRAQEQVRQILASPDCNAAVQAGHEVLVGRAAQSFSKDGNITDQDAVANLEESFTSFVQMTDALSKQTEEDDLMTLKQPFVNDAYINFPTGRLTFKEAQQIFSTIPFEIDLIDRTDHFAWYSDKPNREHVRHVNEIGETVKECHPPKALPAVKAIINSFKDGSRDMVERPLIMHGHRTLIQYYALRDVDGSYLGTIEFTGSVEHIIGLFEKGAFTDVMSGASKHGDDAAKPASADATTGASEDTGAPVDDAADGADQAQADTDATTSASKED
>NZ_CP014924.1|WP_054711619.1|724198_724744_+|NAD(P)H-dependent-oxidoreductase
MKITAIVGSNSKHSANRKLLQFMSRHFDDQDITVADIDKVPMFNENYPGGDPQSVTDLAQQIEQSDAVIISCAEHAHTVSSSLKSVIEWLSYNVHPFANKPVMIVSVSSLPQGGSRAQMALRQILNSPGVNAEAWQGDEFLLGNGDTAFDENGDVKDEGTVKFLDKCFAEFLTFAERQNAK
>NZ_CP014924.1|WP_065901576.1|722943_723894_+|citrate-lyase
MKDIKQQEQIANIARDYYLSKLTISQTSKKYQLSRYLISKYLDDSVSTGLVKITINAPIDRNLEMEAQFKKMFTIQNAFILKDADTTNDDYENIVSFAAEEIQTMIHQSTIVGVAWGGTVATVINHFQPEVNDDVTFTQFAGDNLKYNSAFGSTPLVQKAAAKFDARYLTLPGPLYILNDDIRTTFQQEPAMIPTFSAMSRMDMLFSGLGTMASVDSIPQWRNHRDEILGNADDSDVVGFLYGRPYDINGLILNAQRDKFFGASLDSIMAVTHRVGIVKSKFKGRTLLGALRGGLLTDIVTNESVANRVLLEDHHN
>NZ_CP014924.1|WP_065901574.1|721221_722607_-|class-II-fumarate-hydratase
MTEDYRIESDTIGEVKIPVNALWGAQTERSRNNFPTGAKMPLEIIKALLQIKKAAAIANKEVEAIDGKKADLIVEAIDTLLALSDEDLRKDFPLVVYQTGSGTQTNMNVNEVVAHQAAKINADIEILPNDDVNHGQSSNDIFPTAMNLTAAAAVNRLEASLQHLIDELKQKQEKYWTTVKIGRTHLQDATPLTFGQEVSGWVSALEHDLDYLKTLGQTLSEIAMGGTAVGTGLNAAPHFADIIAEKMSDLYNLKFTADSNKFYGLAHHSGLNVVHGAIKTLASDLMKIANDVRFLASGPRAGYNELNIPANEPGSSIMPGKVNSTQAEAITMAAVRVMGNDVVVNVASSQGNFEMNVYKPVLIDAFLESAELLEGTMRGFADKMIAGLTVNAERMEELVDNSLMTVTALSPHIGYHESATIAQTAEKEGTTLKVAALKSGLVTEEQFDQWVVPIDMTNINK
>NZ_CP014924.1|WP_054708432.1|719553_720942_-|flavocytochrome-c
MAEKFTFTPTDISALKDHYDVIVIGSGGAGLTAAIQAHELGLKPVILEKMDKIGGNTTRASSGMNAAETLVQLKHGVVDSFEDFYAETYKGGGEKNNTELLKFFAEHGALAIDWLADHDIHLDDITITGGMSVMRTHRPSSLAPIGGFLVTELLKQVAKAGIPLFTGVKVTELVKDGDKVDAVKLEIDGKTSDLKADAVILATGGFGANQDLLTKFRPGLKGYKTTNQPGATGDGINLAHALGAKLVDMDQVQVHPTVQQDTPHAYLIGEAVRGEGAILVNKHGDRFTNELDTRKNVTAAIDGLNEGGAYLIFDQGIRDRVKAVEFYDHIGLVTTGQTTDELADQLGFDKSALSNAVSTWNKAVADKNDAECGRTTGMDRDIAHAPFFAIHIAPAVHYTMGGIAINHNTQVLDENDNVIIGLFAAGEIVGGLHGNNRIGGNSIAETVIFGRQAGQQVYKYLK
>NZ_CP014924.1|WP_054708435.1|718969_719440_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MNHETMTAADYLNSLATDIHATVVSTVDADNKPQSRIIDTLYAKDGKLYFTTGKTKDFYAQLQDNPNLAMTGLKGEETLKSFAITVNGEVRDAGTDLMPEIFEAYPYLNTIYPTDEKKAQLRVMEVYTGTVSIYDLRETPIYQNTLAFGESAGQNS
>NZ_CP014924.1|WP_056987984.1|717875_718757_+|ribokinase
MAKILVIGAAFVDVLVHVPKLPQTGEDITGILQGYRVGGSAFNVYGAIQYLKASADLFVPVGQGQYADQIRQTMRQSRIQQLLSVPDADNGWDVAYVEPNGERSFLTINGVEQLWQPEWFDRLTLSDYDTFYVSGYELENDTTAAVILDALSRKRPDATVLVDASPRAAFLSETTWQRLWALGVMVHCNETELNTLVPGAATVAQKTAHLVALTHQPVVVTLGAEGCYFTDGQTTALVPADTVTVVNTIGAGDTHCGGLLVALSQGQPLLEAVTQANRLAGYVVGMESGSLLR
>NZ_CP014924.1|WP_056987985.1|716505_717876_+|cytosine-permease
MNEQPVKVPEQEKTLTPSKLFYNWFAANIGIMGFVFGAMIVSYHLSFLQSLLAALIGALSFLVPGWVAMLGQREGVTTFKLSRAAYGTHGNKIPNAIAWLNMVGWLAVNVITGTLLLVSLFGVIHVVKNDVTRGIALVIFGGLVLLSGLLKEATLAKIQTWLSYIFGILTIVILGIFLVKAHWSAALKLPAGHWITGVLPAISIVAAGSGISWSMAAADWGAYAKPGTKPAATFWSTTMGGAVPLFVLMAGGVLLSTIEPTLATTGDPFGVMYAALPSWLGVIYFLVAAGGLIPQCIISLRSARINLATIGINVSQRTSLLIHGVIIIAIPIYVLFISGNFLSNFEIFLNFLGICLASWVAIFLGDSVMSRKNGYAVSLMQPDSPVHYNWGGIISWIIATVTGFLFTNNAVWNGPFAHDIFRDNSLGVFVSAIVAIVCIIVSHLISGTTKSSEEVA
>NZ_CP014924.1|WP_054711609.1|728936_729539_+|TetR/AcrR-family-transcriptional-regulator
MTQTRRRGAALEAAIYQATREILEEDGLTGLTFPKVAERANTSKPVIYRRWDSPFALAIAALQDKIKRENHGRTDEITLTGHSLADDLTQVLRRFTISMKTFDESYLGTLMDGLSTEQSATIQRMITEGNAIDIKAVDRVVKRAQDRGELGTGTLPAAVKLLPFDLLRYHLFVNQEFSDEQLSTIINDVLIPAYEHALNQ
>NZ_CP014924.1|WP_065901583.1|730329_732279_+|hypothetical-protein
MKIRDSLHWLLAIIIAGIVILAIVAPVTFPTITIGQRIALALSGLGIAGLFIESAHWLTRQTARTQQWLLIGIVIAIGLLQLAVAICFVDAGEADSFIVKNQAVALTSHLTTHWNSYFQVYSNNNNLVLLQTALLKIGNFFGLKTPWVLLNLLRFMWLDTALWAGLSILKTWHRNALRPLFAGMWLLTIPLYCFGLFLYSDSLVIPIPIVTLALWQLSRQHTGWKRYSLAGLLIVELVFGVLIKPNMIVMVIAFIGLMGIGWLHRKISFKTAVTLSLTCLLALGGGLYGSKIMAKQAGYQPNANLALPATSWIAMSWNPATNGEYTFQNAYQERLLPTKQAKDVHAKTLLEHRLTKLGPTGTVTHLVKKSDAFLSSGTFGGFNLTNQWQRAPHWYLANQDAIGYHLTVLSQVMYVGLLLLVLLFFTALPVNWENGFLSLSLLGLMSFHIIFWEVEPRYALPLLPILLLWGVLGTQRLPVPATLQNRKLGRYAVPFITGISLILGGIGLTRFQTTTHTRIVAEQADGKYYNNDRYRLKPGASVTSRIRVTVPSSAIVLQFNRHSQTTVAVTLYRNGHRVAHITGPANLSDYLRYKRVANGRFTVKITNVGHQNTSLGVARSAFPVNQNPLVGHQNLYLRYHVLLRHTEQD
>NZ_CP014924.1|WP_083215455.1|732618_734493_+|hypothetical-protein
MLRKINLTNFFAVLLIGGLGLGILSNVIFPQNPKLSCLVLAIAAGLWFIKPYFKKWTDRFSPQTIKWAFVGTMGIILLVQLLILHFLPATVYHDPYRVLNQAELLSRGHLTWTHSIYFYRSPNNAPLAILLSYWIKLFAMIHLSTFVAVHFLSILLLDGLIALIISLVRQYTTRNYSVLATMLFFIFSSFAYTYYLQVFYSDLPILFTLALVFFVVARWTHLSTLKKIVLGAAIFLAVMLGQIVKPNLIVLAVAIVLVGGWLLIRQRKQFVKLLVPFVLMLGGFAASVPVTHVMEQTSHFSESTKYEIPTTHWIEMGYNPNTYGRISGADVKKLDALPTKAARQAYLNKAFPARLKKLGIVGIVKQWAVKLGILLNVGNVQAAYTGGFIQAPASYQKIAAPVKTLSSALMRASIILLYVEVLLSSVALIRRQATLPNTAFVLALVTAVGYLAFHTLLWETESRYGQALIPMLFLLSTVKRPAIKSLTPKTTRFRVFSTVAFLAVVAAAYITSPLTLIDNIQLVSGQLGQLSIQYKALLTAVKPHQAVTQELQLNHSASRFIVSTAPKAHLTGQLINLKTKHAYQLTAGPKSLLVHHVLAKGKYLIKISNNTTKTQKLQISRMYD
>NZ_CP014924.1|WP_156770451.1|734592_734751_+|hypothetical-protein
MKETRQFTNTYPDLHALPANITTELHEPESRNDLKTYLKVLSTIMQAEGRYR
>NZ_CP014924.1|WP_082409340.1|737179_738349_-|acyltransferase
MRIIFICGVLLNHTTSTFEGRIDNAAASQLFLEATHLMLHFTRMGFMFMTGLVLTLNYYNRKHEWLKFERKRFVSAGIPYLAWNFIVMFLSIEVGVNFSMANFKADYIDAIVHGNQFYMYYILIVLQLYLIFPLIVLMFKKLVNHHTLIMSISFTVQMAILIFIKYFLPHIDDSHWWWWFKAYGENVLTYQFYFLAGTYASIHYKEVKRFINTHIKPIAWITGILSLGTVGLFFFDTDVLHLSMGATMSVHQPYMLVYDIFMIAFVFWVGLRFAYWRQHGLWPWIDRWVHNVAKVSFGLYLVQTIPLAMLAFILTKISLPAWAMVLCLPIGYVFVVAVAFGISWFCYKVPPFGILIGRNNLHFKKRVEATQEKITTVVEEQKLTPENRK
>NZ_CP014924.1|WP_056987979.1|738568_739399_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MPLNVNAVLPLLRGFIREDLGTGDLTASLLEGRPATGRYNLKTAGTVAGQQLPGLLYHLLGDDAAYTPEVQDGETVAAGTVLGTATGNMATILAAERLSLNLMQRMSGIATTTRTAVQTLADDHTQILDTRKTAPGLRVFDKYAVRCGGGLNHRMGLYDLAMLKDNHWHAVGSLTAAVQQLRTVLGPAKKIEVEVETDTELQAAIDAQVDIIMFDNQRPDVVRAWQPRVPAEIQTEISGGITLETLPDYAGTGADFLSLGFLTNRVVNLDIGFDLD
>NZ_CP014924.1|WP_065901587.1|740956_742069_-|lysozyme
MRKLQHSKLLLLGAVIAGVLGTTSVVTAHASLTPSSSQPNTDMVDLSSWQSNLTSSDYQNLAQAGVKAVAIKASEGTSYTSPVLASQTSDAQGAGLAVNYYHFAHFTTVAEAQAEAQNFINSVQAVTNSKNMVMVVDFEDSAFSGLSKSTNDANLAAFDAVLNQAGYNKTDLYTMASWVGKVIDTNDSNKGWLAQWPANPSGSAYPSANAWQWTSDYRFNGENQDLDVSQLNNSYYLDGATSTPTTSTTTDSSSSTKASQPTTTLVKVPAPSTSSYSASRSNSVKLVWRASMKKHAYHTTAGARYSKHLGIRYDYNKNLPNVTWYTNQHEKLYRKSKGDYIIYYHVNTADGKHGGWIWRGYLKAGVNPAK
>NZ_CP014924.1|WP_065901591.1|742986_744126_-|transposase
MVLKGFKLRLYPNEAQQLAINQNFGFNRFIWNQMLGMLIKRYENSPETKLLSAFDLNNLLPTLKQEYPWLKQAESTSLQCTNADLIGAYKKFFKGHAGFPRFKSRKYPKQSYQCKMGIKFTDRTHLKLSKIGVVRFRGGQQALGKVKSVAIRLTATGKYFASVLIDTDITKLPKTGLSVGIDLGVSDLMITSTGVKYPTIRFDKRLAKKKHYWEKRLARRRLQAKQEIACDHHNHVPEPRELADFKNYVKARRMVAQYNEKIANQRYDYLSKLTKALVEQFDVVKMEDLKTKNLLKNHKLARAIANQAWREIRRQLTYKCAFYGKQLVTVSPYKTSQLCSSCGFDDGKHPLEIRSWTCPDCHTQHDRDINAARNILQGS
>NZ_CP014924.1|WP_054711599.1|744427_744853_-|heme-binding-protein
MANYLQAKQDITLALAQQLVSDGVDAANQAHVKVSIAVLDLSGNLKTFAQMDNAAPVSVQVAIGKAISAIQLQDESGVFEQFVNSGQPAMMTTPGVLPLQGGVPIRADSNVIGAVGVSGSTGDGDLALAREIVAVAEKLLG
>NZ_CP014924.1|WP_056987976.1|745161_745647_-|nitroreductase-family-protein
MTDSVLARHAVRSFKQDKLTSEEVDQLISAFQAAPCGMGQADVTQAVVIESDDMLQRFEKSVNDAAYGAPLLFVIATKADSQFGERNASVAAENVMVEATRLGLGSVYVMSAAMALQKDPDLIADLGIDDGYTPQVVVPVGHATEEIAANDRSDRYKVMRR

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Crispr_ID: NZ_CP014924_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_3

986705-986824

Orphan

Consensus_repeat	Method
CCTTTCTCGGCAGCTGTGCCGAAACGAGTTCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_3

>merge|NZ_CP014924|3|986705-986824|CRISPRCasFinder
CCTTTCTCGGCAGCTGTGCCGAAACGAGTTCCACAAGGCACGGGGCTAACGTGTAACGGACTCTGACCAAAAAGTCAGGCCCGGACTCCTTTCTAGGCAGCTGTGCCGAAACGAGTTCCA

>NZ_CP014924|3|3|986705-986824|CRISPRCasFinder
CCTTTCTCGGCAGCTGTGCCGAAACGAGTTCCA	CAAGGCACGGGGCTAACGTGTAACGGACTCTGACCAAAAAGTCAGGCCCGGACT
CCTTTCTAGGCAGCTGTGCCGAAACGAGTTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_054708345.1\|986929_988054_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP014924.1\|WP_056986994.1\|988408_989599_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_CP014924.1\|WP_065937534.1\|983633_985565_+\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP014924.1\|WP_065901818.1\|979829_980690_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273441
NZ_CP014924.1\|WP_065901817.1\|983361_983637_+\|cupredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379208
NZ_CP014924.1\|WP_065901815.1\|989647_990451_+\|putative-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377672
NZ_CP014924.1\|WP_054708321.1\|994339_995443_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|226987
NZ_CP014924.1\|WP_083215469.1\|979032_979833_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273441
NZ_CP014924.1\|WP_056987000.1\|995844_997806_-\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|132152
NZ_CP014924.1\|WP_054708318.1\|998542_999208_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP014924.1\|WP_054708365.1\|982974_983346_+\|cupredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|226980
NZ_CP014924.1\|WP_065901813.1\|990557_992711_-\|KxYKxGKxW-signal-peptide-domain-containing-protein	unknown	unknown	gnl\|CDD\|274741
NZ_CP014924.1\|WP_065901809.1\|999833_1000706_-\|FAD-synthetase-family-protein	unknown	unknown	gnl\|CDD\|185679
NZ_CP014924.1\|WP_054708316.1\|999329_999770_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379275
NZ_CP014924.1\|WP_065937533.1\|976461_976929_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP014924.1\|WP_191982561.1\|975256_976459_+\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_CP014924.1\|WP_065901819.1\|977215_978244_+\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379006
NZ_CP014924.1\|WP_065901811.1\|993335_994316_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|223700
NZ_CP014924.1\|WP_082409162.1\|978271_979036_+\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213223
NZ_CP014924.1\|WP_054708354.1\|985622_986405_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_054708345.1\|986929_988054_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.59527e-48
NZ_CP014924.1\|WP_056986994.1\|988408_989599_+\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.12919e-80
NZ_CP014924.1\|WP_065937534.1\|983633_985565_+\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP014924.1\|WP_065901818.1\|979829_980690_+\|ABC-transporter-permease-subunit	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	2.76998e-47
NZ_CP014924.1\|WP_065901817.1\|983361_983637_+\|cupredoxin-domain-containing-protein	gnl\|CDD\|379208	pfam13473, Cupredoxin_1, Cupredoxin-like domain. The cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel.	4.42442e-18
NZ_CP014924.1\|WP_065901815.1\|989647_990451_+\|putative-ABC-transporter-permease	gnl\|CDD\|377672	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV. CmpB is a family of membrane proteins that are likely to be part of a two-component type IV ABC-transporter system. Families can transport multiple drugs including ethidium and fluoroquinolones. UniProtKB:Q83XH0 is a member of TCDB family 3.A.1.121.4.	3.70995e-58
NZ_CP014924.1\|WP_054708321.1\|994339_995443_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	1.75012e-23
NZ_CP014924.1\|WP_083215469.1\|979032_979833_+\|ABC-transporter-permease-subunit	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.76266e-59
NZ_CP014924.1\|WP_056987000.1\|995844_997806_-\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|132152	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.	4.05898e-144
NZ_CP014924.1\|WP_054708318.1\|998542_999208_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.23196e-07
NZ_CP014924.1\|WP_054708365.1\|982974_983346_+\|cupredoxin-domain-containing-protein	gnl\|CDD\|226980	COG4633, COG4633, Plastocyanin domain containing protein [General function prediction only].	1.40538e-34
NZ_CP014924.1\|WP_065901813.1\|990557_992711_-\|KxYKxGKxW-signal-peptide-domain-containing-protein	gnl\|CDD\|274741	TIGR03715, cell_surface_protein_precursor, KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.	7.9145e-09
NZ_CP014924.1\|WP_065901809.1\|999833_1000706_-\|FAD-synthetase-family-protein	gnl\|CDD\|185679	cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.	4.28379e-70
NZ_CP014924.1\|WP_054708316.1\|999329_999770_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379275	pfam13577, SnoaL_4, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	2.43205e-20
NZ_CP014924.1\|WP_065937533.1\|976461_976929_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	8.76358e-71
NZ_CP014924.1\|WP_191982561.1\|975256_976459_+\|GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	4.50397e-173
NZ_CP014924.1\|WP_065901819.1\|977215_978244_+\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|379006	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake.	4.57707e-39
NZ_CP014924.1\|WP_065901811.1\|993335_994316_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	1.17812e-14
NZ_CP014924.1\|WP_082409162.1\|978271_979036_+\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213223	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.73044e-118
NZ_CP014924.1\|WP_054708354.1\|985622_986405_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.33224e-82

>NZ_CP014924.1|WP_054708354.1|985622_986405_-|glutamate-racemase
MVNQQSPIGVLDSGVGGISTLQTLTKLLPDEDFIFYGDSANAPYGEKDATTVQTLANNVIETLRNQGVKAIVIACNTATSAAKPQLMTAYPDMPILGIEPALKEAVDAGKQHILVMGTPLTISLPKYRAQVARFADQADIHSLPCPGLADRIEQGHAGLLEITAHLTELMAPVVNEPIDGVVLGCTHYPFIGKLIQAQFDHHVDLYTGYEGLTNYLKRQLADHDLLRSGHTKQSVTFMSSRDTPAELALYQQLFANGIGL
>NZ_CP014924.1|WP_065937534.1|983633_985565_+|copper-translocating-P-type-ATPase
MSISQRFWISLILSLPMLANMILMPFGWNLPGGAWTELVLTTLIMLISARPFWESAWASFTKHHSNMDTLVAIGTVTAYVYSIYAMITHQDVFFESAAFVTTFVLLGQVFEERMRNNASNAVEKLANLQAKDAEVLRNGQFTKIPLSEVVVGDFIRVKPGQKIPVDGVITEGVSSVDESMVTGESMPVEKKTDDAVIGATINGNGTFTFKASKIGEDTMLSQIVELVKKAQNSHAPIQNLTDKVSDIFVPIVLILAILTFLVWYVFLGASVANALIFAVSVVVIACPCALGLAIPTALMVGTGRGAKMGILIKDGTVLEAVNDIQTVVFDKTGTITVGKPQVTDIVGDTKQVLSIAASLEEDSEHPLAAAILDRAKADNITLSATNNFKAIEGKGVEAQLNGQSGVVGNDKLAQDLTFSDDLRAQMVTLQNEAKTVVLVGLDQTVIGLIAIQDVPKATSQEAVADLKARGLKTVMLTGDNQRVAQAVANEVGIDDVIADVLPGDKADHIAELQKSGKVAFVGDGINDAPALTTADVGIVMGSGTDIAIDSGGIVLVKNDLRDVDRALALSKKTFNRIKLNLFWAFVYNVLGIPVAAGLFYFIGISLSPELAGLAMAFSSLSVVTSSVLLNKAKIKPKHHVQLD
>NZ_CP014924.1|WP_065901817.1|983361_983637_+|cupredoxin-domain-containing-protein
MSENKQQATVEVAGGYKPETITLHQGIPAELSFTRTNDQGCLDVVHSKALNFEEELPLNETKTVTIDTSKTGEFDFSCGMDMFHGKVVIEP
>NZ_CP014924.1|WP_054708365.1|982974_983346_+|cupredoxin-domain-containing-protein
MLKISVLIVGLAVIGFIVWWFFGKHTTEEVAADVQDQQQEIDIEVNGGYSPETVVLKQGVPAILNFTRKDASSCLDRVVFSDFGINQELPRNQKEAITIDTTKPGEYQWACGMDMFHGKLIIK
>NZ_CP014924.1|WP_065901818.1|979829_980690_+|ABC-transporter-permease-subunit
MIKPEKQLTMPTPMAQGPQFKVPLRFRDRRRVTIYLTLLALAYLTLTTLPTMVPEQLDLLAASQTFLQNIQIMFFHPALSNTTFVQLLQALLESVLLALLTTMLGAIIAFGLAVISFRQFVPAWIGLGIQSFMALIRAIPNVLWVLIYSVVFGLGANAAVIGLTFHSVAYLTKVYTDSMDELAPDAIETMRAMGLKNGPIIRQALIPNFIPSFLSWTFIRFEINFADAVAVGAAAGAGGIGYQLFMSSSFYFNFHEVGVIVYLILVFAILLEIASYQLRKRVMGNQ
>NZ_CP014924.1|WP_083215469.1|979032_979833_+|ABC-transporter-permease-subunit
MTPKALTISRFFFKKRLHLTMLVLIFGLAYGVASVGLGCQTSALFHAQDGVIWLIHNFIPNAESTQYWQDILHQLIRTFLIAVSSTTCAAIISLFLAALGANTLSINNAVTWVIRSFSSLMRNIPIVAWAMILLFSFKQNDLTGFLALFFMTMGFLTRAFMETIEDFGTDKIEALQATGANYLQVIFQGLLPEIAAALLSWVLYMIENNIRDATLVGLLTGTGIGFIFDLYFKGMRYGAAGLVVLAVIILVVAVEVISNLIGRLIA
>NZ_CP014924.1|WP_082409162.1|978271_979036_+|phosphonate-ABC-transporter-ATP-binding-protein
MLEVKHLMKSYDGQKRSLTDVSFSVATGEVAAIIGPSGAGKTTILRSINQLITDDEGQVLLNDLDLRQLNRSQLRQARRNIGMIFQNYNLIEPLTAIENVLHGCLGSKSTLAGIFSLYRQSEKEEALQLLNKVGLGNFAYQQCRHLSGGQKQRVGIARALMQHPKMILCDEPIASLDPKSSILVMETLRQLAIDDHISVLVNLHQVDIARDYTDHIIGINSGQVVFDDTAEALTDTAAAQIYRKDLVPSEEALA
>NZ_CP014924.1|WP_065901819.1|977215_978244_+|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MMKIFKRSLLAAGMVGVALSAAGCQSADSTGESASNKSLSVVFLPSDSAKEATAARTSVAKALSKATGKKVTVKTTTDYNVAVQAIASGKAQIAMMGAEGYIQAHKQSKDVVPIMTHSGKSGTLSDAQYRSYIMVPKDKAASYKVNGKYDIHKIKGKRMSFVSNTSTSGFAIPAGALQQTFKLKSKDDLSQNGKFFSKVLFGGSHQGSAVNLLKGDADVAAFDDTDLVQYGKFTNDASKVGADFKINKDAAAPFDAVRGKESIALAVYPVQNEPVVVNKKGVTQKEINKIVKVFTSKQVTNDKKFFAPADAKVRGMFTKDGDTRFIAISDKWYAPTHKILGE
>NZ_CP014924.1|WP_065937533.1|976461_976929_+|6,7-dimethyl-8-ribityllumazine-synthase
MNTYTGKISGAHQRIGIVVVQFNDLVTTRLLNGALTALKQFGVADTDITVTWVPGALELPRAAKLMAASGKVNGIIVLGAVVRGETSHYDYVCANTASGLADVSLNGSVPVMFGVLTTDTMDQAMNRAGGKAGNKGSECASGVLEMIHLGDWIAQ
>NZ_CP014924.1|WP_191982561.1|975256_976459_+|GTP-cyclohydrolase-II
MINRVETALETLKNGQLIIVTDDDHREAEGDMVGLAQYASGDTVRTMVTNARGLLCVPMTQEIGERLGLTPMVANASDAYGTAFTISTDAKTTSTGISAFDRADTIRQLADPASQPGAFYHPGHIFPLIAKERGVMARGGHTEAAVDLAKLAGATPVAYICEILQKDGHMARRRELKPFAEGIQMPLISIQDIKQYRYMKDRGIAELITSVKLPTKYGDFQLEAYDTQDGHEPTLLISKGQIQPNEPLLLRLHSECLTGDILGSKRCDCGEQLATALRAIEKAGHGAVIYLRQEGRGIGLANKLRAYKLQEEGLDTVEANVQLGFEPDERDYGLVAALLHKKQVHDVTLMTNNPDKMTQLEALGITLDDRLPIETPVQPESRHYLETKKHKMHHLLKEVQ
>NZ_CP014924.1|WP_054708345.1|986929_988054_-|GGDEF-domain-containing-protein
MFWRNLFSSMAFLTFGLVGFAAIFGNIETVSERLATKRHWLSVFRQELALVGYVCVALVGLYFLAQSWWHQSNDGTLYWIFINAQFLVLIYSNLMLKSVWSFLIVQSMGAVILGGTGSMSVYTWAVFMIAGAIIFTERLYNSFFDRRPVLYAIPPLLVGMGSWYAVSVSYYITHAQLLVQIVAFLVSGFGVYTFNRQLHNDQRVLVKLTQEVQYDALTGARNWMMFRDDLERAFSKVHHNRQTSLIVFDVDHFKSVNDTFGHLAGNQVLMATCSTVQQVLSEVGAADTLYRTGGEEFAIVLVDRTPEMARQITELCQIRLRRLIVRDQGEQIRITASFGVTTMTRHDRNATEAFRRADKNLYQSKRMGRDRITV
>NZ_CP014924.1|WP_056986994.1|988408_989599_+|MFS-transporter
MHKRFTSFALLLILIAANMRIAIIVIPPLTTMLQHSLGLSTSQIGSLTSIPLLCFGLFSAIGSLIIKKVGLHTTLITGLIVLTIANFVRVYSPTLLFIGTLFVGLAIAVLNIGIPILVLSWFPGDQIRLNGLYTASLNLFAAIVAGGTATTAQHLGWQHTVQLISIPALLAVIYLGIFLLRTPKQVAQPAPSSAATTETAATPHHSVYQNSAVWLLMVFMGVQSAIYYAAVAWLPSLLTSHGLSATTSNLIFGVFQIIGVPFSYWAPRFLTGYKQLRIGLTLILLGYLIGLTPFLFNSGTVVLTIATMILGATTAAIFSLAMSFITILANTPDEAGQIGGTAQSGGYLIASISPVLLGVLQSHTHSWSDIVIVLMILAVINITIGFVLNRNHFKRA
>NZ_CP014924.1|WP_065901815.1|989647_990451_+|putative-ABC-transporter-permease
MAYNLTLEYNFTIWVLYFFAYAFVGWVWESGYVSVRKKKWTNSGFLNGPAIPVYGFSMIAVLAAIHPFEHNLIAVYFVSAILITVIGYITSWLMEVLFHARWWDYSKVPLNLNGRVALPISAFWGLGVVVIVKVIHPLVAKAVLHLAAIHGIFGAIVLLILFAFDFGFTLANVLAFGAATKRIGDVIEDKKKELRDRSDATLENAKNWLDTYRSGQDTGDKVPRLNYVQRRLLHGLPNLQVHGTDTSAKEITALADVMKRRRKQNDK
>NZ_CP014924.1|WP_065901813.1|990557_992711_-|KxYKxGKxW-signal-peptide-domain-containing-protein
MTKNNHQQLMQATTERKHHVKLYKAGKLWLAAGITTAAMGIAAISGGVVANADSTGEPASGETTSVTNDSDLTVTKSLTLNSASSPEDSQADPVSNGNETPDPDGNAAQEGTGSEQSQSEQLEQGNTDTGQSDPDEPGTPGQGDKGQNQQESNEGSSVSSSFTSTTPADNPNESKTIVSVTIDQSNGARVNTYSDGSTKEIMGVADNVPDEGQIADTSVDLTNDDPASISPVTEEDQDLDATPTTIHFTLVDPDNPNDTQVVDLNTGENIDDITGRFNSAEVSDELASELTTLEGEGYILADNGYEDALKKAGLTETTPNITLGEAVNTVTALVQKSIDDYNAANPGANLKLIGVVDGKTEGLYTDEGDGYIPAKLIYEVYSPQLLTDDSTPSLCDVSRTVTDGATLAPTFGAVNYVLNAYNYMTFVSIGSNDTTTYTPADGSGAILVGTFSKLHEYAGDKSISGQFNYEPSTYNITLSIQREIPEDPAGTPDDPSAMQVFTKVLVPAPVTATGKTPEDSDDGVPGTTPLHVYTKANVPGSVTAKGKTPKDEDGVPGIGTPLHVYTKTDVPTPTTPNDTTPSTPTPDTVTNVPTAPTTPSDVVPSTPEGDTLTETPTTPDNNDVTPAGPSADTLTPTAANGNQTTTTTAGDTTPTILTTSSNVQVETPNSAATPTKTAAKAESLPQTSEQHTNSLAILGLALLGGLLRLVAPRRRHN
>NZ_CP014924.1|WP_065901811.1|993335_994316_+|prolyl-oligopeptidase-family-serine-peptidase
MSKRVITAMLILLICLVAGSAGIIRLIAKPVAQKQPVSGTSRRAQAHQVVLKPHHASKIPTTPSSVTSHVIYSKALQQNWHYRVYLPKNYARLKTDGQHFASIYMLHGLYGDETNLTTQAHSKQVLDQLVNSQHLPVVVIFPDGSNSFYLDTETQKMASAIMTELIPKMTTTYQLAGAKHRAVGGISMGGYGAANLTFRHPNAFHTAALISPTVWQQVPQTVQANTQISAFKHNGAFSQALYDQNQPTRYLGTYLKKGRQPAAFYIESTSQDTTVPIAAVNQFTNALKRQHIPVTYQIDHFGNHNWTYWNHALPLAYRFIFQHLKN
>NZ_CP014924.1|WP_054708321.1|994339_995443_+|zinc-ribbon-domain-containing-protein
MNTCPNCGAAVKPSDTFCQNCGYKLTQATTSTQPQPVTPTTTSAATRTVRKRHPHRKLRWISAIIVLAAVAVFYFYGTSAYSKTKQVDSMVSTLESHNGGSAAKFMTTKDPSLDINASALKPFITYITQNKSYLAQMKSALNKNDQTNDGTFKLVKDGHHLLFFPRYKLEVTAMYPTVSTNEDGASISLNGVNVATAKNDDYTYKAGPLFPGRYTFKMKDDENKRSVVANLVSTQVKNAKVDLSVEDDATTDDGTTATANTSDSSDTTTAPEPNDGNHNNSGDTSDYGLFEEEYKGDEQAGIDAVSFQYGFDYDDYTYKLSWPHTDVLQVEAYDKDSHDYDGTYRYDQIHDIASELDEDTGKFETGD
>NZ_CP014924.1|WP_056987000.1|995844_997806_-|asparagine-synthase-(glutamine-hydrolyzing)
MCGIIAFSDPQVEDKPAVLDSMLKMIQHRGPNVSGGGKYTNDKVAMGFVRLSIIDLKSGAQPIYNEDGSILVTFNGEIYNYQSLRKELIEKGHTFKTKSDTEVLLHGYEEWGMAGTLKRVRGMFAYLIYDMNKKTMYGARDFFGIKPLYYYQNGDTFIVGSEIKSFMKHPNFKLELNKKAVKPYLMNQYNDLKETFFKGVYRFPAGHWFEYSDDGQLDIHEYWDAKYNIENDRSVDQVVDEIDDVVTDSIDRHDNADVPVGSFLSEGVDSSYVTTVLKPQEVFSVNFNDGPFDEASVAKELADENGFNFNVETVNPREAFEDFPEMQYHLDEPDANPSVMPLWYLCRLARRKVTVALSGEGADELFAGYVNYGEHSTNGTVKAVANGIRHLPKGLRYRIGHSIKKMKNFPGKTQLYTWAAKPADYYVGESLIYDPDQPTIFTANQANGVLTDDYKNDLTVNGIYQEDFAKVKDTEEIKQMQYIDLHHFMLNDILQKADKISMAHSLELRVPFLDKDVAEFANNVPSKMLLNSKDSKWAFRKAAGKHLPADFANRPKLGFPVPIKTWLREEDYCDVVRSLFKEDWVSDIFDQDKILQLLQDNFDGKTDARRQIWTVYTFLVWYKMFFIDFDGTVKKYGHVQPEVKALMDSGKLV
>NZ_CP014924.1|WP_054708318.1|998542_999208_-|TetR/AcrR-family-transcriptional-regulator
MPIAKSKAYHREQMVHRLLPVIRVTGFHDMTLQKIVTRAHVSKVTFYKYFESFDDLVAQIVSDLVDYLQEEEFPTQVTQENYLSAFQHISLKTFELSAFISLRFQTDLAADYPELANQLERAILTREQALTAFYEQGRTLGIVADVDIAMVVYRDRQMVPALVDRHIGDTADQVAEMMRDYMVLTARELLATKYLEQFPLTDFETQVAALSEKIQDSYQAL
>NZ_CP014924.1|WP_054708316.1|999329_999770_+|nuclear-transport-factor-2-family-protein
MTQTIEARLQHLEDLEALRALQAHYADLVNTGWNGKQTDLDQFSDVFTADAYWKSAMMNVDMTGRDNIVNMLQSQMGTPDTINMHNFTSPQFKIDGDTATGEWLLWVLVKSDDNTNVVYQSEDVSYQRTEDGWKIAGLTLNLATIA
>NZ_CP014924.1|WP_065901809.1|999833_1000706_-|FAD-synthetase-family-protein
MQVISLNAQKLNTLSQQAPVVLALGFFDGVHQGHQQVIQTAKRLADERHLPLAVMTFNRHASRLFQPDAPFRYLNTLDQKTAHMAENKVNLLYVADFNRQLAGLMPTAFIDQYLLKLNAQVVVAGFDYTFGRGGSHGMADLDHLSAGRFEVVTVNQLTERREKVSSTRIRHLIGHGEIKAANALLGYDYEIAGQLMVTGNRLVVTPDSPLQQLPAAGRYFCVVRDAQLREPAVVTVEENGRLAVMLSGIEPQQNAPVAVTITWTQQLSVDTAELVLPGQSFKNESLSSCL

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Crispr_ID: NZ_CP014924_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_4

1142634-1142739

Orphan

Consensus_repeat	Method
TTGGCATCATAGCCGTAACGTGTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_4

>merge|NZ_CP014924|4|1142634-1142739|CRISPRCasFinder
TTGGCATCATAGCCGTAACGTGTTCCGCAAGGCACGGGGCTAACGTGTAACGAACTCTGGACCGCCTTGCTCCCAATTTTTTGGCATCATAGCCGTAACGAGTTCC

>NZ_CP014924|4|4|1142634-1142739|CRISPRCasFinder
TTGGCATCATAGCCGTAACGTGTTCC	GCAAGGCACGGGGCTAACGTGTAACGAACTCTGGACCGCCTTGCTCCCAATTTT
TTGGCATCATAGCCGTAACGAGTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_065901868.1\|1130289_1130754_-\|DUF3021-domain-containing-protein	unknown	unknown	gnl\|CDD\|378668
NZ_CP014924.1\|WP_065901881.1\|1150188_1152135_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|235542
NZ_CP014924.1\|WP_065901883.1\|1152153_1153329_-\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP014924.1\|WP_065901874.1\|1133932_1134946_-\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
NZ_CP014924.1\|WP_156652819.1\|1154216_1154501_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_065937546.1\|1131351_1132260_+\|DUF1211-domain-containing-protein	unknown	unknown	gnl\|CDD\|226078
NZ_CP014924.1\|WP_083215481.1\|1147210_1149883_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP014924.1\|WP_065901877.1\|1142935_1144348_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|341046
NZ_CP014924.1\|WP_054710706.1\|1135610_1136039_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP014924.1\|WP_054710713.1\|1145646_1145883_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP014924.1\|WP_065901878.1\|1144400_1144871_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239825
NZ_CP014924.1\|WP_162231468.1\|1153331_1153577_-\|S4-domain-containing-protein-YaaA	unknown	unknown	gnl\|CDD\|274378
NZ_CP014924.1\|WP_065901879.1\|1146511_1146799_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP014924.1\|WP_082409249.1\|1136048_1136753_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225239
NZ_CP014924.1\|WP_054710715.1\|1145908_1146469_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180915
NZ_CP014924.1\|WP_065937547.1\|1132727_1133936_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP014924.1\|WP_083215480.1\|1140373_1142398_-\|DHH-family-phosphoesterase	unknown	unknown	gnl\|CDD\|226404
NZ_CP014924.1\|WP_054711974.1\|1130750_1131194_-\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NZ_CP014924.1\|WP_065901876.1\|1139821_1140274_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP014924.1\|WP_056987230.1\|1138036_1139425_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|180232

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_065901868.1\|1130289_1130754_-\|DUF3021-domain-containing-protein	gnl\|CDD\|378668	pfam11457, DUF3021, Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins.	5.03506e-20
NZ_CP014924.1\|WP_065901881.1\|1150188_1152135_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NZ_CP014924.1\|WP_065901883.1\|1152153_1153329_-\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	1.95036e-161
NZ_CP014924.1\|WP_065901874.1\|1133932_1134946_-\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	6.06213e-59
NZ_CP014924.1\|WP_065937546.1\|1131351_1132260_+\|DUF1211-domain-containing-protein	gnl\|CDD\|226078	COG3548, COG3548, Predicted integral membrane protein [Function unknown].	4.73646e-25
NZ_CP014924.1\|WP_083215481.1\|1147210_1149883_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP014924.1\|WP_065901877.1\|1142935_1144348_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.50098e-59
NZ_CP014924.1\|WP_054710706.1\|1135610_1136039_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.30609e-12
NZ_CP014924.1\|WP_054710713.1\|1145646_1145883_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	2.95968e-36
NZ_CP014924.1\|WP_065901878.1\|1144400_1144871_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	4.65613e-64
NZ_CP014924.1\|WP_162231468.1\|1153331_1153577_-\|S4-domain-containing-protein-YaaA	gnl\|CDD\|274378	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage. [DNA metabolism, DNA replication, recombination, and repair].	3.67721e-28
NZ_CP014924.1\|WP_065901879.1\|1146511_1146799_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	2.50433e-35
NZ_CP014924.1\|WP_082409249.1\|1136048_1136753_+\|hypothetical-protein	gnl\|CDD\|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	1.78024e-24
NZ_CP014924.1\|WP_054710715.1\|1145908_1146469_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|180915	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional.	6.07574e-57
NZ_CP014924.1\|WP_065937547.1\|1132727_1133936_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.01019e-151
NZ_CP014924.1\|WP_083215480.1\|1140373_1142398_-\|DHH-family-phosphoesterase	gnl\|CDD\|226404	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms].	0
NZ_CP014924.1\|WP_054711974.1\|1130750_1131194_-\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	2.08165e-19
NZ_CP014924.1\|WP_065901876.1\|1139821_1140274_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	4.36638e-56
NZ_CP014924.1\|WP_056987230.1\|1138036_1139425_-\|replicative-DNA-helicase	gnl\|CDD\|180232	PRK05748, PRK05748, replicative DNA helicase; Provisional.	0

>NZ_CP014924.1|WP_083215480.1|1140373_1142398_-|DHH-family-phosphoesterase
MNGFFSRDNSPEFLRNKRLRGLALFIMCLSLIGVVMAFIFSWILGVAFLVLIIVSSVFAFNTMNEISADMNRYIADLSFRINRGEQEALIDMPVGVMMFGDNDAIEWVNPYLQRYFGDETVLSRRLNDVDPELEQLIEAHASDEHAQTVTWRERQFSFLVQKDVRAVYLMEVTHFAQIQSRYDNERLAIGQVFLDNYDEITQSMTDQDVSNLRNYVTNELSVWAQKFGMYLKHLDDDHFLVFLYAKSLTAIEEDKFSILDTIRENTSKQNFPLTLSMGIAYGGADLAKLADQAQSNLDLALGRGGDQVVVRAQDEEARFYGGKTNPMEKRTRVRARMISQALQELMSQADTIFVQGHQQPDMDAIGACMGIRRIAQMNGKECYIVLDQEKIHSDVQRLMVATKDYPEIADAIITPDEALNKVTKQSMLVMVDHSKTSLSISPELYERLENRTVIIDHHRRGEEFPENPMLVYIEPYASSTCELITEMFEYQSQESEPVNKIEATAMLTGIFIDTKSFSLRTGSRTFDAASYLRSAGADLVQMQQFMKENVDSYLQRNHLIELVEFINGDLAVVTGEEDQIYDSVTAAQAADSLLNMSGIDASFVITKRDDGRIGISARSTGQLNVQIIMEKMGGGGHLSSGATQISDSTVSDVKQQLVAILNGEDEEEPTPEKE
>NZ_CP014924.1|WP_065901876.1|1139821_1140274_-|50S-ribosomal-protein-L9
MKVIFLQDVRGKGKRGEVKDMPDGYAQNFLIKQNKAKAATSAAMSQLKGQQRAEEKREEEDREEAVKLKAVLEDKKTVVQLTAKAGTDDRLFGAISSKQLIQALDKQFGITINKHKLEMKEPIKMLGYINVPVKLYKDVTGTIRVHVDEK
>NZ_CP014924.1|WP_056987230.1|1138036_1139425_-|replicative-DNA-helicase
MSEGLRDQTPPQNIEAEKAVLGAIFLNGDALVDAMELVQADDFYRRAHQLIFQVMVDLNDRDEAIDAVTVSDELKRQNQLEDVGGMTYIAELASSVPTASNVGYYAKIIGEKATLRRLIQTATKIVTDGYAEDESVDDIIDGAEQAIMNVSEARSQAGFKIIKDVLNNTFEEIDKLSQQGDTVTGLSTGYKDLDDMTTGLHEDELMILAARPAVGKTAFALNIAQNVGTKTDKAVAIFSLEMSAESLVSRMLCAEGSINANHLRTGQLEENEWQNLIVAMGSLSKAKIFIDDTAGIKMSEIRAKCRRLDKEQNGNLGLVVVDYLQLIESSGAENRQQEVSAISRQLKKLAKELHVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVSFLYRDDYYERDGDDDDDNDGGGQDDETQDVGEVEVIIEKNRSGPRGTVKLLFVKSFNKFSSVAYTPEG
>NZ_CP014924.1|WP_082409249.1|1136048_1136753_+|hypothetical-protein
MQRSLFVRAIVKHFLLLFFGITFMSAGVGLSRLAQLGTSPISSIPNVTSIITGFTLGQLTIVFMILLIVLEAFILRRQFSWQNILQLIPGIVFGFFIDGFVKLFSFLPMTTYWWQLFFTAISILLLSFGVYLEVNSQAIIMSGEGLTAAISLVTHTPFPTIKVRQDITMMLIAAVLALIFRHSLSGIREGTAITAILTGRFVSFYTNKMPRFTAWMTKPDHPEEDKESVAEQHS
>NZ_CP014924.1|WP_054710706.1|1135610_1136039_+|MarR-family-transcriptional-regulator
MPLYSLSKFIAGIYRHSKTEFNQQIAGLDVRATQSDLLLFIYDNPNLVQREIATEMVIDPSLLARDLRKLSQQKLVTRTSDTTDKRVNRINLTPAGIRAAERLKHTMISWWDSFFTQHPEIDQTAFSDQLQKVYEALQNTKN
>NZ_CP014924.1|WP_065901874.1|1133932_1134946_-|2-dehydropantoate-2-reductase
MKYGIIGAGAMGYRYGVMLQENAGVDVDFIDTWEPNVEQVRSQGGVSVARDHENRHIVPINIYYPEEYTGHPDVWIVFKKQMQLAEELDRDNKAGIFHDDQYVFSAMNGMGHFEKIADYFPADHIVCGSAMIATRMDGPANVDFMGAVDSEQMHMARYNNEKPDETVQAIFDDFTQAKLGPIFSDEWKGMCMSKVVFNAVTNTLCTMFEMQMGQFIEYDGVREMSEQLFNEAFDACERAGIHLIETRQQETDSVITVSKAYKYHYPSMYQDFSKGRPTEVDYINGYIAKIGREHDYVCRTHEFVVHEVHMAEMMRKYHKPAENTADAQTTEKAGAQA
>NZ_CP014924.1|WP_065937547.1|1132727_1133936_-|PLP-dependent-aminotransferase-family-protein
MNYHYSDRVPESDEDPVGNILKVAGSDKIISFAGGLPAPELFPVDELKKVTDEVYDESGRAALQYSVANGLPELREQIVKRMVKSNIHTTADNIIITTGSQQSIDLTAKMFVNPGDTVIVEQPTYLCALDVFRTYGAHLVGVEMDDDGMKIDALEQAFVANPNTKFIYTIPSFQNPTGRTMPFDRRQKMIEIAKKYDVIILEDDPYGAIRYAGDDVAPIKSIDDDERVIYMSTFSKILAPGLRIGWIVAEKKLVKKFTLMKQSADVHSDNLTQHIIAKFMGEYNIDDHIAKIKAVYREREGVMMDAIETYFPKGVHYSHPEGGLFIWVEVPGDINTQDLFNTCIKNDVAFVPGEPFYADKVIPGTFRLNYSNMTDEKIVTGIQRLGKAIEQTIASQKVEQGA
>NZ_CP014924.1|WP_065937546.1|1131351_1132260_+|DUF1211-domain-containing-protein
MKAKLKERLDVFADAVIAIIIAIIITIMVMSLPLDIHNGVVDYPQLFKSIGIYLVSFCFIANLWYQHALVFNEAETVANRVIVFDLILLFLMSLMPAFTRLMTTVTNSDNVMLYGGLSLLISFIFSWISRTIIQAKYTDKATMTQIYKTIFGSTVWNSWVIYIVIIGLGYFFPEIALGFYLFIPLWSFFSHTREQEEFQQIDQMEAQDQQKFLALPAPQKRAFRRLIRTFQIEQRQSGHDRDKQHAAWIKFSEQAKTEFNISDGALAKWMKINGNGNRNNNRNHQEHQENRDDHQQAHQNKQ
>NZ_CP014924.1|WP_054711974.1|1130750_1131194_-|LytTR-family-transcriptional-regulator
MNVVFNIAEQILRPFITINAAKETPDLVHLAKTIDQLANHLTITGTQDKRQRPLSVYQISRFYTEDKHVVCETDDGVYRISERLYELKELLPEGLFVQVSSSELVAVASIRDFELTPTGSYQVNLTTGERTFASRRCMRQLREGLLK
>NZ_CP014924.1|WP_065901868.1|1130289_1130754_-|DUF3021-domain-containing-protein
MKRTILSRVIIGVVVGVFIGFMIAMGISLAYRAPIFMPSSTSFVNHFSSSLMATAASIGLWALMGIVFAVGALVFEVERWSITRQTVTNFIITYVLFTPLAVLAGWFPISPLWSWLLSFTIEFIVIYVIMWVTSMRVARASVRRLNALLNQTKK
>NZ_CP014924.1|WP_065901877.1|1142935_1144348_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MEQQATMSASRPRVVVKHPALAMASMLIGAFVGMFSETSLNIALPKLMVSLSISTATVQWLVTGYMLVIGIVLPLNSLITKWFTTRQVVIFGLLDFLVGAVIAALAPSFPILLFGRMIQGIATGLILPLMFTVAMQVFAPAKLGAAMGACAMVIMFAPAIGPTLTGLILAKLSWHWIFWAFVPFLLIALVFALTSLENVGNISKPKIDVLSILTSVVGFASIVTAVSFASSKGWGSPLVLGLLLFGIIVLVVYAYRQVHIAEPILNLKIFANPAFRAGALMVMLDFGIILSAMYILPMYMQKGLLLPVAMTGIIMLPGGIVNALVSAVSGNLFDNFGAKWLTRLGFLIALIGAIMLLTTSTHTAVAFVIAAHVVLMIGCPLAMSPAQTHALSALKGPASGDGSTIMNTLQQIIGAISTALATSLLGIGEAASHASAQGAFTAGVHMAVYLPVVLSVVALLIAFTTRSFKK
>NZ_CP014924.1|WP_065901878.1|1144400_1144871_-|YbaK/EbsC-family-protein
MSLEAVEQYFEPYGLSDRIHVFHESTATVAEAAATLGIDPDQIAKTLAFDVDGQAVVVVASGLSRVANGKFKRAFGKRANMIHRDEVEARIGHAVGGVCPFALNPDVKVYLDESLKKYDTLYPDAGDTNAAIRLSLAELEQYSHPTGWVDVAKETN
>NZ_CP014924.1|WP_054710713.1|1145646_1145883_-|30S-ribosomal-protein-S18
MAQQRRGGRRRRKVDFIAANHIEYIDYKDTDLLKRFVSERGKILPRRVTGTSAKNQRKLTIAIKRSRIMGLMPFVAED
>NZ_CP014924.1|WP_054710715.1|1145908_1146469_-|single-stranded-DNA-binding-protein
MINRALLTGRLTRDVDLRYTPSGAAVGNFTLAVDRQFTNQNNEREADFINCVIWRKSAENFANFTHKGALVGIDGRIQTRNYENQQGQRVYVTEVVVDNFALLEPRSANNNSNGNSGSYNNNQNGGSNNYNSAPAGNNSAPQNNNPFGDPNTNGAANNNQNSGQNQADPFANNGDSIDISDDDLPF
>NZ_CP014924.1|WP_065901879.1|1146511_1146799_-|30S-ribosomal-protein-S6
MKYEITYIIRPDLDDAAKTALVDRFDKVLTDNGAELIDSKDWKKLRFAYEIGGYSEGVYHIVNLNSNDDAALNEFDRLSKISDDILRHMIVKRED
>NZ_CP014924.1|WP_083215481.1|1147210_1149883_-|DNA-gyrase-subunit-A
MADQDLPNRIQDVDLAKTMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHELGVTPDKPYKKSARIVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYPLVDGHGNFGSVDGDGAAAMRYTEARLSKIALEMLRDINKDTIDYQPNYDDTEKEPTVLPARFPNLLVNGASGIAVGMATNIPPHNLAEVISAIHILMKNPDATTADLMEALPGPDFPTGGVVMGKSGIRKAYETGKGTITLRAKVEIESDKSGKQRIVATEIPYMVNKAKLIERIADLARDKRIEGITDVNDESDREGMRIVVDVRRDASAEVILNNLYKMTLMQTSFGFNMLAIVAGSPKVLSLKEILQYYLAHQLEVIQRRTAFELKKAEARAHILEGLKIALDHIDEIISIIRGSQTADVAKTELMSRFPLSDKQAQAILDMRLVRLTGLERDKVEHEYDELQKSITDYKAILASRDRQNQIIYEELLEIQEKFGDDRRTELMVGEVLSLEDEDLIEEENVMVSLTHNGYIKRLPTTEFKAQNRGGRGIQGMGIHDDDFIEHLISTSTHDVLLFFTNAGKVYRMKGYEIPEYGRSAKGIPIINLLNVDSKESIQAVINVSDAAGDQEKYLFFTTLKGTVKRTPVDEFSNIRSNGLKALNLKDDDELINVSIVDADQNMIIGTHSGYAVSFQASDVRSMGRSATGVRGVRLRDDDYVVGSAILGPTSNVFVISEKGYGKQTPADEYAMKGRGGKGIKTINITEKNGPLAGLTTVNGEEDIMLITDKGVMIRFGVENVSQTGRTTLGIHLIRLDDDSKVATMAVVEKEDPDDGDDAQDVTPTDDGGSDGDAPVITNETTTGTDTSLDRLLNAADAEDDDDTTNDSDADNDSDSGMLGNPDDTDDDD
>NZ_CP014924.1|WP_065901881.1|1150188_1152135_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MADKEESKQEKAREYDASQIQVLEGLEAVRKRPGMYIGTTSSQGLHHLVWEIVDNGIDEALAGFADAIHVTVEKDNSITVVDNGRGIPVDTQKKTGKSALETVFTILHAGGKFGGGGYKVSGGLHGVGASVVNALSSELDVKVVRDGKRYYMDFAYGHVKTPMKVIDEGLPENIRGTTVHFLPDPDIFRETTTYDIKILTTRIRELAFLNKGLRITIRDERPDEPTEQSFMYEGGIRHYVEYLNKNKDVIFPEPIYVEGEEKGITVEVALQYTDDYHSNLLTFTNNIHTYEGGTHEEGFKRALTRIINDYARKNNLMKDNEDNLSGEDVREGLTAVVSVKHPDPQFEGQTKTKLGNSDARTATDHLFSERFSKFLMENPDEAKKIVDKGMLASKARVAAKRAREVTRKKSGLEISNLPGKLADNTSKDPAISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKASMDRILANEEIRSLFTAMGTGFGEDFDVSKANYHKLIIMTDADVDGAHIRTLLLTLIYRYMRPLLEAGYVYIAQPPLYQVRQGKMHRYIDSDEELKDFVGQLPPSPKPAIQRYKGLGEMDAEQLWETTMDPENRRLLRVDASDAMDSNDAFTTLMGDKVEPRREFIEQNAKYVENLDA
>NZ_CP014924.1|WP_065901883.1|1152153_1153329_-|DNA-replication/repair-protein-RecF
MKLQALALHNFRNYDDVTVAFGDGVNVLLGENAQGKTNLLEAIYFLALARNHRTSSDRDLINWQAETAQVKGRVQKASGNTPLELDLSKHGKRAKVNHLEQAKLSRYVGQLNVILFAPEDLSLVKGAPQIRRRFMDMEFGQMSQKYLYNLSQYRTILKQRNKYLKELGAKQQKDLVLLDVLSDQLANYGAQIMFQRITFLKQLETWAAQIHQEISQQRETLTFHYATSIADDALVDTAHIYEALKAGYAAKRDKELFQRTTLLGPHRDDLKFIVNDKDVASFGSQGQQRTTALSVKLAEIDLMHEQTGEYPVLLLDDVLSELDDMRQTHLLTAIQDKVQTFLTTTSLSGVAQKLIHQPKIFTINNGQISSESDDGDEDASADAADDETNGI
>NZ_CP014924.1|WP_162231468.1|1153331_1153577_-|S4-domain-containing-protein-YaaA
MKVGEAVKKEVFIEPPYITLGQMLKEEAIVGSGGQAKWYLKEHAVDVNGEPDNRRGRKLYPGDTVDVKDVGLFFIRLNQAE
>NZ_CP014924.1|WP_156652819.1|1154216_1154501_+|hypothetical-protein
MIDLLVHFDTNWFYLLGLRLLLCGFVHFGYPASNIKPGLANESYCFFWQLLSISLELKRVPEGRGLLQKQLRPKKAKPGFSDESYKLLLATAFS

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Crispr_ID: NZ_CP014924_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_5

1334947-1335077

Orphan

Consensus_repeat	Method
GCTTACATGCAGCTTTCTGTTTTCCGGAACTCGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_5

>merge|NZ_CP014924|5|1334947-1335077|CRISPRCasFinder
GCTTACATGCAGCTTTCTGTTTTCCGGAACTCGTTTCGGATCGAGGACAGAGAACCACCCAGAAATGCCTGAACTTGGCATTTTTGCCAGATTTAGCTTACATGTAGCTTTCTGTTTTCCGGAACTCGTTT

>NZ_CP014924|5|5|1334947-1335077|CRISPRCasFinder
GCTTACATGCAGCTTTCTGTTTTCCGGAACTCGTTT	CGGATCGAGGACAGAGAACCACCCAGAAATGCCTGAACTTGGCATTTTTGCCAGATTTA
GCTTACATGTAGCTTTCTGTTTTCCGGAACTCGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_054711416.1\|1324484_1324967_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197670
NZ_CP014924.1\|WP_054711405.1\|1335283_1335718_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP014924.1\|WP_065937555.1\|1323790_1324423_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP014924.1\|WP_083215489.1\|1342691_1343312_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP014924.1\|WP_065928628.1\|1332759_1333770_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
NZ_CP014924.1\|WP_054711414.1\|1325130_1325433_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_065928627.1\|1331822_1332638_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NZ_CP014924.1\|WP_056986934.1\|1336923_1338318_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273050
NZ_CP014924.1\|WP_065928630.1\|1335734_1336172_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP014924.1\|WP_065928629.1\|1334010_1334865_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187578
NZ_CP014924.1\|WP_065928634.1\|1343713_1344310_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP014924.1\|WP_056986927.1\|1325523_1326642_-\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP014924.1\|WP_054711400.1\|1336230_1336719_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP014924.1\|WP_065937557.1\|1341211_1342585_+\|Nramp-family-divalent-metal-transporter	unknown	unknown	gnl\|CDD\|234815
NZ_CP014924.1\|WP_065928632.1\|1338743_1339991_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP014924.1\|WP_065937556.1\|1326996_1328484_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273270
NZ_CP014924.1\|WP_173585423.1\|1345354_1346074_-\|DUF554-family-protein	unknown	unknown	gnl\|CDD\|377371
NZ_CP014924.1\|WP_065928633.1\|1340208_1340793_+\|uracil-DNA-glycosylase-family-protein	unknown	unknown	gnl\|CDD\|381683
NZ_CP014924.1\|WP_065928626.1\|1328673_1329450_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187610
NZ_CP014924.1\|WP_056986933.1\|1330144_1331686_+\|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl\|CDD\|198372

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_054711416.1\|1324484_1324967_+\|hypothetical-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.9089e-06
NZ_CP014924.1\|WP_054711405.1\|1335283_1335718_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.34106e-14
NZ_CP014924.1\|WP_065937555.1\|1323790_1324423_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	3.88905e-73
NZ_CP014924.1\|WP_083215489.1\|1342691_1343312_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.01469e-11
NZ_CP014924.1\|WP_065928628.1\|1332759_1333770_+\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	2.50474e-46
NZ_CP014924.1\|WP_054711400.1\|1336230_1336719_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.62304e-10
NZ_CP014924.1\|WP_065928627.1\|1331822_1332638_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.976e-69
NZ_CP014924.1\|WP_056986934.1\|1336923_1338318_+\|FAD-binding-protein	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	2.48709e-106
NZ_CP014924.1\|WP_065928630.1\|1335734_1336172_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	1.26731e-40
NZ_CP014924.1\|WP_065928629.1\|1334010_1334865_+\|hypothetical-protein	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.07997e-37
NZ_CP014924.1\|WP_056986927.1\|1325523_1326642_-\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.19601e-34
NZ_CP014924.1\|WP_065928634.1\|1343713_1344310_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.94931e-08
NZ_CP014924.1\|WP_065937557.1\|1341211_1342585_+\|Nramp-family-divalent-metal-transporter	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
NZ_CP014924.1\|WP_065928632.1\|1338743_1339991_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.04313e-77
NZ_CP014924.1\|WP_065937556.1\|1326996_1328484_+\|MFS-transporter	gnl\|CDD\|273270	TIGR00792, Melibiose_carrier_protein, sugar (Glycoside-Pentoside-Hexuronide) transporter. The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	9.49253e-114
NZ_CP014924.1\|WP_173585423.1\|1345354_1346074_-\|DUF554-family-protein	gnl\|CDD\|377371	pfam04474, DUF554, Protein of unknown function (DUF554). Family of uncharacterized prokaryotic proteins. Multiple predicted transmembrane regions suggest that the region is membrane associated.	1.11569e-73
NZ_CP014924.1\|WP_065928633.1\|1340208_1340793_+\|uracil-DNA-glycosylase-family-protein	gnl\|CDD\|381683	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil may arise from mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations; thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other. UDG family 1 is the most efficient uracil-DNA glycosylase (UDG, also known as UNG) and shows a specificity for uracil in DNA. UDG family 2 includes thymine DNA glycosylase which removes uracil and thymine from G:U and G:T mismatches, and mismatch-specific uracil DNA glycosylase (MUG) which in Escherichia coli is highly specific to G:U mismatches but also repairs G:T mismatches at high enzyme concentration. UDG family 3 includes Human SMUG1 which can remove uracil and its oxidized pyrimidine derivatives from, single-stranded DNA and double-stranded DNA with a preference for single-stranded DNA. Pedobacter heparinus SMUG2, which is UDG family 3 SMUG1-like, displays catalytic activities towards DNA containing uracil or hypoxanthine/xanthine. UDG family 4 includes Thermotoga maritima TTUDGA, a robust UDG which like family 1, acts on double-stranded and single-stranded uracil-containing DNA. UDG family 5 (UDGb) includes Thermus thermophilus HB8 TTUDGB which acts on double-stranded uracil-containing DNA; it is a hypoxanthine DNA glycosylase acting on double-stranded hypoxanthine-containing DNA except for the C/I base pair, as well as a xanthine DNA glycosylase which acts on both double-stranded and single-stranded xanthine-containing DNA. UDG family 6 hypoxanthine-DNA glycosylase lacks any detectable UDG activity; it excises hypoxanthine. Other UDG families include one represented by Bradyrhizobium diazoefficiens Blr0248 which prefers single-stranded DNA and removes uracil, 5-hydroxymethyl-uracil or xanthine from it.	1.11957e-92
NZ_CP014924.1\|WP_065928626.1\|1328673_1329450_+\|SDR-family-oxidoreductase	gnl\|CDD\|187610	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs. NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).	5.30929e-103
NZ_CP014924.1\|WP_056986933.1\|1330144_1331686_+\|FGGY-family-carbohydrate-kinase	gnl\|CDD\|198372	cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0

>NZ_CP014924.1|WP_065928629.1|1334010_1334865_+|hypothetical-protein
MNYTIIGVSGQLATYLMRYMADDAGLANCQVVARRQMGTSSSQSVPTQTADVSDQAALTQHLEGTDVLIYMADITATVNRNIVEFETMLEAAKAAFVTQLIFVGSFADQERNPYVLSPFYGYATRRLATAGIPYAVIKNALLADQLIPSLPEFVRQAALTYPVGDQALSYIGANNSAEVIAKVAVTPTLRGKGQSYTLTQPCSLKMTDLAHILTMTLGEKIGYAPASLQDFAASQRKSGIPGRTSLYQAGAMGLLDIVTDDFETIVGRRADGMAAILKQRVALI
>NZ_CP014924.1|WP_065928628.1|1332759_1333770_+|amidohydrolase
MTELITVEEHYATAASLKAATAQHAQPADTAAAKRLGQAIGGGLAQYAVDDKLIEPLEDRLAFMDAHNIKMQVLSDEGLEGTAPDKAVAQAQEMNDHLGAVIQQYPTRFSGFAALPVQNGEAAAAELERAVKEDGLKGAMIHGRVQSQFLDAPQFTPIFEKAAELDVPIYIHPGMTAPAVLNTYYLSDQYPLASGGALGLPGFGWHAETGLQFVRLVLAGRFDQFPDLKIMMGHWGELVSFYMHRMDETIMPTKPGLKHDISYYFHHNLYVSPSGLFDQNQLQWAVNEFGADHILFSTDYPYEPTDKIATFLDDADLTQAQRDQIGSGTAESILHL
>NZ_CP014924.1|WP_065928627.1|1331822_1332638_+|Cof-type-HAD-IIB-family-hydrolase
MYRLITSDLDETLLRKDGSISEANVSAIKEAAGAGVKFVPNTGRSFLTIQPLLQTLGLFQQPDEYVISYNGGVVVENQNNRVIVSNAMPHDEAEKVFGIMREFDDIDIHVYTLDHLYIYHLRADDQAYLKTRGVAYDEFNAPTLAAFKNDQIMKIIGMHPQRHVQDRLYQAVMTRFNDQINCTYSSGQYMEVNHLGVDKGKAVLDLGQQLGISADEIIAIGDNDNDLSMLRVAGMPVAVANGIDSVKQVAKYVTDHDYERGVADAIKHFID
>NZ_CP014924.1|WP_056986933.1|1330144_1331686_+|FGGY-family-carbohydrate-kinase
MKYLIGTDIGTSGTKSILMDTNGKLLAQDLEEYDVLTPRPLWAEQWPDVWVKGVKDSIRAVVKDSGVDPKDVQGIGLSGLYGGSGVPVDKDMNPVRPDLIWMDRRAAEETQWVKDNVDLDRLSEITGNDVVDPYYGYTKVLWIKNHEPENWKKTALFLPPNNYAIYKLTGAVSIDYSAAGNIGGFYDINKGTWSKEMMDAMGVPMDKMPQKFVDATEVAGRLTKESAEDLGLPEGLPVIAGGVDVGAANIGMGVLKPGRYVAAIGSSMNAALVSETPIKGKGLIVWPYPYKSRELVYNFSGSATAGAITKWFRDNFGEAEVAVQKAGGKNAYVTLGEEAKDVPAGSRGLVVLPYFMGERAPIWNSDAKGTILGLSLVHTKADVFHAFEEAVCYALRHSIESTGRDLGDYIVIAGGVTHSKAWVQMFADVTGYAVRTPIDDAEANLGDVMLAGLATDSLTVDDVQKWQVLGDKVEPRKEQHDIYNKYYKLYRNVYKDLGDDMHELSLISGIEES
>NZ_CP014924.1|WP_065928626.1|1328673_1329450_+|SDR-family-oxidoreductase
MGILDRMRLDGKVAYVTGGAQGLGKAMATGLAEAGADVAIVDINGDKAQATADEIAKDTGRKTIAVATDVTDQDQVEDMIKTVVDKLGGLDAAFNNAGVCLNIPAEEMTFEQWQKVVNLNLNAVFLCSTAAGRYMLKQGKGSIVNTASMSAHIVNRPQPQCSYNATKAGVIQLSKSLAIEWAKKGVRVNTMSPGYMGTDLTLSSPDLKPLIKTWNDWAPLGRLGKPDELQGMAVYLAGDTSSFSTGEDYLIDGAFTAW
>NZ_CP014924.1|WP_065937556.1|1326996_1328484_+|MFS-transporter
MRKYVSYALGTFGHDAFYNTLSIYFMMFLTSQLFTNASDEKMVGIVTIAVVVIRVGEIFFDPLIGGVVDNTQTRWGKFRPWIMTGSVVASVGLLFLFSDYFGLAWNNPMIYLILLIITFLMVDVFYSFSDIALWSMLPAVSLDTKTRTKFETASRIGSTLGAQIVIVIITPAIMLFSHLISHVSYGTQTRAGWTGYVAIVVILCAGGALITCLNIKEQHNLIRSNVKHTTVSDIFRAIGNNKQLLWISASYILFAFSYVVTNSLLMYYFRYRLGNAGAYTWVGVITCILGVISVSLFPALESLIHRKAIYVGGIAFMLIGYIIFLFAGQSLPMVLVAVAFYFFPYPLIFLATLMTITDSVEYGQLINGTRNESVTLSVRPLLDKLAGAISNGIVGVVAVAVGMTGNAKPSDITSGGVQEFNTFMFYIPIILLVIAAIIFGSKVTLTEAKHAEIVKELSKRLKTENGGKEETATTESTTTTGQGNLTTDTPTSGQH
>NZ_CP014924.1|WP_056986927.1|1325523_1326642_-|ROK-family-transcriptional-regulator
MLSSNMQSIQQSNYSDIYHLLYAHDKLSKQDIADELGLSLPTVSTNLQKLINQQLVMKNGQLKSLIGRRATAYSIDPNVGLSIGVELYRTNATIAIINLRNDILALHTVNIPFANDTEYCEVLSQQLLQLIRNKGLSLNQITGAGIGIQGLISNDGTTVLYGKILGGTGMKTSDFSQYLPFPVTFYHDADCVAVAEFAGTPTDGIFLSINEHIGTAIIINGQVLKSTSGRDGTMEHITLNAVDGPVCYCGRRGCIETYCSLSSLLQPNETLASFFSDLHQKKKAVVKRFETYLDYLADAIYNLHMFIDTPLIIAGELTKYLNETIYDALKKRLKERSVFPENEEYLRFGKVGDHSVAIGAAIPAINDLLADI
>NZ_CP014924.1|WP_054711414.1|1325130_1325433_+|hypothetical-protein
MLDVKRSQQETKALSRMDDLVAHAVNASNNVVSATYLIQASQQLTTLETVTDDDLSEIDTEFWQLNDLILSGFAASYMNHTDRIGQCYQAFHEKVTTMLA
>NZ_CP014924.1|WP_054711416.1|1324484_1324967_+|hypothetical-protein
MTKEMENRIFDELRQMITERDAVNREQSWIVNHLEEPALSAMVPKTSIVGLHILSALKRQDMTGIELAQTLNVTRGGVTRAAKTLLKLALISSYKQAQNQKNLYYKLTTNGRTIADTHDEMHATLETQRLSVIHEKYSDDDLELIGNFLHDMLLAERNFK
>NZ_CP014924.1|WP_065937555.1|1323790_1324423_+|FMN-dependent-NADH-azoreductase
MTKLLVIMAHPHTETTGKSVQVAQTFMTQYQQNHPEDEIVVRDLFTTSVPPLNDATFDAWLKVKYGKTLNSDEETLLAAHSDWLEEFVSADKYVFVNPMYNHFLPAELKSYIDVTAVTRKTFKYTANGPVGLLTGKKALHIQAAGGLYHDPEHPNAQADLGDSYLDMILNLYGIKDTNKIFIEGCDQMPEQTATILAAANDEATQLAKTF
>NZ_CP014924.1|WP_054711405.1|1335283_1335718_+|MarR-family-transcriptional-regulator
MALSQHDLHQIRAFNRDYTELLGLLNKRVFNTTLSWPEARVLMLIAAQMPISPKDVAARLALDRSYTSRLIKKLATMGLVKKTPSSTDSRAVILTVTTAGRVLNTQLDQQSDKQVQQILQPLTPSQQQRATQAIETLQDLLFKS
>NZ_CP014924.1|WP_065928630.1|1335734_1336172_+|GNAT-family-N-acetyltransferase
MWQVKPFAELTATEYFECLKLRVKTFVVDQNRVYQEVDDNDLKAVHIFNQVDDQVVAYARVFQTHAQTVTFGRVVTDDAHRGTGMGNDLMHQIMTVVQQDFPDLTISIEAQVQVQGYYRKFGFETEGDTFIFNSTPHIKMVHSAL
>NZ_CP014924.1|WP_054711400.1|1336230_1336719_-|MarR-family-transcriptional-regulator
MEKLTYFKTEIDPALVTLASQLASGDEFEKTWISSRLADPELAAIVDQLSIINMHTLRAIAVHHLINGVALAEKLGVTRGTISKSTKKLLQLALIQQEKHPDNQKEIHYRLTPAGTAINAQHQALDTYLNQQAQQVVSQFSETDLHNIASFLAKMGQIRKRH
>NZ_CP014924.1|WP_056986934.1|1336923_1338318_+|FAD-binding-protein
MTVFKAFSDDQILAFLKDQVKAGTVYTDEATLQKQSFSPNLSGDDSGLALAYIEAGNSDDVKGVLKTARKYHIAVIPQDQFTTTVIGADGVAGSFILSTKKMNQIVEISKADSLAVVQPGVINGDLDEAARKEGMFYAPDPGSKPISGIGGNAATNAGGMSTVKYGATKDNILGMKVVLADGREIKLGGRTLKQAFGYNLTQLFVGSEGTLGIITEITVKLLPIPLGTPTMGIAFFDDMTKLAEGVAAIRISGVYPTMLEALDSATISALDTYEGTHYSENSGAMLIFKIDSSTPETVKVLNDLLAKYQAKDVQVTTDATEQAALEKLRRDMLPAIFAGQNHIMEDMAMPLSKLAPMMDYISEVGTKLNLKIYVAGHAGDGNVHPTIVWPKEVTETPQAVVEALQPMFHKTLELGGTISGEHAVGMLKNQWNNEELGEDVDQIQHQIKALFDPMGILNPKRKIN
>NZ_CP014924.1|WP_065928632.1|1338743_1339991_-|MFS-transporter
MNVLRSTFSSLQNRNFRYFWFGQCISVMGTWIQRTAQTWLVYQMTGSAFLVGVLTACQFVPILLLTLVAGTVIDRYPKKRILLLTQFGFLLLGLAMTVLIYTKLVQYWEILAIAILYGILQSFDTPTRQSYVVELVGQKDLMNGISLNSTLFNMSKIVGPSLAGILMAQFSVGFCFLVNTISYFAVLLGLFLIHQTKPLASRSRQRMWSDVKYGLSYVWHQPNIRLSAELMLVVSTLNFNNNVIIPIFAKTVLHSGAQVYANLLSASGIGSLIAAFLMSYLSRFGLQRNIYLFVTAGTVCLQTLMLFVHTYWLAMLVMVAVGFCNMIFLNQSNASFQYSIPDNLRGRVMSVYVLLNQGTTPIGSIFVGAVMDIAGGIWGFPSCGILAIVLLIPVVFSQRKLIGSWVRGESVEQGD
>NZ_CP014924.1|WP_065928633.1|1340208_1340793_+|uracil-DNA-glycosylase-family-protein
MTKADDIFQAIQDDPQNEAFTKAGIQPLYKVMPEAEILITSQAPSRRAQESMLFWDDPSGDRLRDWMGVTREQFYNSGKVAVLPLDFYFPGKGARGDLPPRKGFAEKWHAPLLALMPNIKLNLLIGQYAQKYYLQKRRQKNLSETVKHYADYMPEYFPLVHPSPLNYGWLKQHPWFEAEVVPALQAEVADVFRK
>NZ_CP014924.1|WP_065937557.1|1341211_1342585_+|Nramp-family-divalent-metal-transporter
MVKDDTTKHNNLVQGVSGDGKSLDEVNGSVKVPKNAGFFKTLMAYTGPGILIAVGYMDPGNWITSISGGAQFKYRLLSVILISSLIAMLLQAMSAKLGIVTGKDLAQLTRERTSKGMGIVLWVIAELAVMATDVAEIIGSGIALELLFKIPLIIGILITAADVLLLLVLMKLGFRKIEAIVATLVAVILLVFAYEVALSNPSMSDIIKGYVPTSGILTNHSMLYLSLGIVGATVMPHDLYLGSSISQTRQLDRSDHNDIKKAIKFSTIDSNMQLFIAFIVNSLLLILGAALFFGTNSSLGRFVDLFNALSNSQVVGAIASPMLSMLFAIALLSSGQSSTITGTLSGQIIMEGFIRLRVPLWVQRLVTRLLSVTPVLIFAIIYKGNEAKIESLLTASQVFLSIALPFAIIPLVIFTSDKKIMGEFANRPWVKYAAWISTVVLIGLNIYLLFDEIIGLF
>NZ_CP014924.1|WP_083215489.1|1342691_1343312_+|TetR/AcrR-family-transcriptional-regulator
MMKTDSKGDAQKEKIVRIAREMFATNGFEATTTRKINQEAGIAEGLMYYYFPHGKRQILDTVVYEGVMARLSTAKFSFRNINSSADLEDQLMACFEKIWANFSDEQLYQSFMITIRERPLLSDKQANWLLDTLDALAGQLSDGLINMTGAFHVPAEQAPALAQVLLAIFQKLIYDQLLIKNDRQLDGSLKSALRPQIQLLLSQIEA
>NZ_CP014924.1|WP_065928634.1|1343713_1344310_+|TetR/AcrR-family-transcriptional-regulator
MLKKNHTRRELQKAMLALLTSKPFANITVNDLVKQSHLNRSTFYRCYDDKYDLIRSVEDDFIAKFMVFRKQFGIFNLENDALEAKFEFCRAHAVTIRTLLSVNGDPRFERRLRQEIDRAVDAKFQLKMKNDLDIMAANFAKSSLSGAVMYTIGFIASNPDPKLVVPLEQNMKRLILNGLWQILEEISDPDKEKNPDTK
>NZ_CP014924.1|WP_173585423.1|1345354_1346074_-|DUF554-family-protein
MYIVGIGTIVNTAAVLVGGLIGYIFQQLLNDKLQKTIIQAIGVAVIFIGIAGVLSQMLVVKHGQVGTHGTLMATISLVVGSLIGELIDIDHQFIKLGDWLRRKVGAKSDSLFIEGFVSATLTICIGAMAIIGSLQDAVNHDPTMLFTKAILDGVIVAIYAASFGVGAIFSSIPLFIFQMSITLLAVFINQFLTTAMTNGISLVGSMMIFCIGINLLLDTKVRVANMLPALLVVVGYAMV

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Crispr_ID: NZ_CP014924_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_6

1348152-1348287

Orphan

Consensus_repeat	Method
GCATTTTTGCCAGAGTTGGCTTACATGCAGCTTTCTGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_6

>merge|NZ_CP014924|6|1348152-1348287|CRISPRCasFinder
GCATTTTTGCCAGAGTTGGCTTACATGCAGCTTTCTGTTTTCCGAAACGCGTTTCGGCTCGAGGACAGAGACCCACAAAGCAATGCCAGCACTAAGCATTTTTGCCAGAGTTGGCTTACATGCAGCTTTCAGTTTT

>NZ_CP014924|6|6|1348152-1348287|CRISPRCasFinder
GCATTTTTGCCAGAGTTGGCTTACATGCAGCTTTCTGTTTT	CCGAAACGCGTTTCGGCTCGAGGACAGAGACCCACAAAGCAATGCCAGCACTAA
GCATTTTTGCCAGAGTTGGCTTACATGCAGCTTTCAGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_065902017.1\|1353951_1354905_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|225070
NZ_CP014924.1\|WP_054711400.1\|1336230_1336719_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP014924.1\|WP_065902023.1\|1359231_1360518_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP014924.1\|WP_065902011.1\|1351029_1352004_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176215
NZ_CP014924.1\|WP_054707613.1\|1360793_1361042_+\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319798
NZ_CP014924.1\|WP_056986934.1\|1336923_1338318_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273050
NZ_CP014924.1\|WP_065902003.1\|1347576_1347990_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898
NZ_CP014924.1\|WP_065928632.1\|1338743_1339991_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP014924.1\|WP_065902015.1\|1353102_1353939_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP014924.1\|WP_065902019.1\|1354976_1355816_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180766
NZ_CP014924.1\|WP_083215490.1\|1346417_1347554_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP014924.1\|WP_065928634.1\|1343713_1344310_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP014924.1\|WP_173585423.1\|1345354_1346074_-\|DUF554-family-protein	unknown	unknown	gnl\|CDD\|377371
NZ_CP014924.1\|WP_083215489.1\|1342691_1343312_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP014924.1\|WP_054707633.1\|1352416_1352962_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP014924.1\|WP_065937557.1\|1341211_1342585_+\|Nramp-family-divalent-metal-transporter	unknown	unknown	gnl\|CDD\|234815
NZ_CP014924.1\|WP_065928637.1\|1355969_1356740_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_065902009.1\|1350229_1350829_-\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NZ_CP014924.1\|WP_065902005.1\|1348374_1348845_+\|heme-degrading-domain-containing-protein	unknown	unknown	gnl\|CDD\|179430
NZ_CP014924.1\|WP_065928633.1\|1340208_1340793_+\|uracil-DNA-glycosylase-family-protein	unknown	unknown	gnl\|CDD\|381683

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_065902017.1\|1353951_1354905_+\|amidohydrolase-family-protein	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.72381e-20
NZ_CP014924.1\|WP_054711400.1\|1336230_1336719_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.62304e-10
NZ_CP014924.1\|WP_065902023.1\|1359231_1360518_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP014924.1\|WP_065902011.1\|1351029_1352004_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176215	cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	9.83351e-74
NZ_CP014924.1\|WP_056986934.1\|1336923_1338318_+\|FAD-binding-protein	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	2.48709e-106
NZ_CP014924.1\|WP_065902003.1\|1347576_1347990_+\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	4.4901e-17
NZ_CP014924.1\|WP_065928632.1\|1338743_1339991_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.04313e-77
NZ_CP014924.1\|WP_065902015.1\|1353102_1353939_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	8.15038e-15
NZ_CP014924.1\|WP_065902019.1\|1354976_1355816_-\|SDR-family-oxidoreductase	gnl\|CDD\|180766	PRK06940, PRK06940, short chain dehydrogenase; Provisional.	5.9985e-43
NZ_CP014924.1\|WP_083215490.1\|1346417_1347554_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.19182e-50
NZ_CP014924.1\|WP_065928634.1\|1343713_1344310_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.94931e-08
NZ_CP014924.1\|WP_173585423.1\|1345354_1346074_-\|DUF554-family-protein	gnl\|CDD\|377371	pfam04474, DUF554, Protein of unknown function (DUF554). Family of uncharacterized prokaryotic proteins. Multiple predicted transmembrane regions suggest that the region is membrane associated.	1.11569e-73
NZ_CP014924.1\|WP_083215489.1\|1342691_1343312_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.01469e-11
NZ_CP014924.1\|WP_054707633.1\|1352416_1352962_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.56166e-07
NZ_CP014924.1\|WP_065937557.1\|1341211_1342585_+\|Nramp-family-divalent-metal-transporter	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
NZ_CP014924.1\|WP_054707613.1\|1360793_1361042_+\|HAD-hydrolase-like-protein	gnl\|CDD\|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.22927e-24
NZ_CP014924.1\|WP_065902009.1\|1350229_1350829_-\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	1.06324e-75
NZ_CP014924.1\|WP_065902005.1\|1348374_1348845_+\|heme-degrading-domain-containing-protein	gnl\|CDD\|179430	PRK02487, PRK02487, heme-degrading domain-containing protein.	6.02236e-56
NZ_CP014924.1\|WP_065928633.1\|1340208_1340793_+\|uracil-DNA-glycosylase-family-protein	gnl\|CDD\|381683	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil may arise from mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations; thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other. UDG family 1 is the most efficient uracil-DNA glycosylase (UDG, also known as UNG) and shows a specificity for uracil in DNA. UDG family 2 includes thymine DNA glycosylase which removes uracil and thymine from G:U and G:T mismatches, and mismatch-specific uracil DNA glycosylase (MUG) which in Escherichia coli is highly specific to G:U mismatches but also repairs G:T mismatches at high enzyme concentration. UDG family 3 includes Human SMUG1 which can remove uracil and its oxidized pyrimidine derivatives from, single-stranded DNA and double-stranded DNA with a preference for single-stranded DNA. Pedobacter heparinus SMUG2, which is UDG family 3 SMUG1-like, displays catalytic activities towards DNA containing uracil or hypoxanthine/xanthine. UDG family 4 includes Thermotoga maritima TTUDGA, a robust UDG which like family 1, acts on double-stranded and single-stranded uracil-containing DNA. UDG family 5 (UDGb) includes Thermus thermophilus HB8 TTUDGB which acts on double-stranded uracil-containing DNA; it is a hypoxanthine DNA glycosylase acting on double-stranded hypoxanthine-containing DNA except for the C/I base pair, as well as a xanthine DNA glycosylase which acts on both double-stranded and single-stranded xanthine-containing DNA. UDG family 6 hypoxanthine-DNA glycosylase lacks any detectable UDG activity; it excises hypoxanthine. Other UDG families include one represented by Bradyrhizobium diazoefficiens Blr0248 which prefers single-stranded DNA and removes uracil, 5-hydroxymethyl-uracil or xanthine from it.	1.11957e-92

>NZ_CP014924.1|WP_065902003.1|1347576_1347990_+|VOC-family-protein
MTIKRIAHASFKVTDMAKAVAYYCDGLGFTDKFELQDDQGRPWIKYLEITPGQFLELFYDPDNQPKATHGYDLDGFLHISLEVDDIQQTKRDLEAKGLAVDSEIKYGPDYSYQLWSSDPDGNQIEFMQYTGKSLQMR
>NZ_CP014924.1|WP_083215490.1|1346417_1347554_+|Gfo/Idh/MocA-family-oxidoreductase
MEINALNAAIIGCGVISDIYIQSLQEKFKIIEPVACYDRDEARMNTQAEKYGLKPMSYEAILDDPSIDMIINLTNPAAHYEVTKQALLHDKHVFSEKMIAVDLKQGQELCDLAEAHHVRLGVAPDTFLGAGIQTARYIVDKGLIGTPLSAVVSLNRDFDVYADIFPHMNQAGGSLPFDTGCYYMTALANILGPAKRVTSFGRKYQPDRVGKRVDKPWFGEKSTVAADNILTAVVEYANGTLATVHFNSENILTEVPQLDIYGSDGTLNMGDPNNFDSQNYLQKPQNERTAFPFTHGYRENSRGLGAAEMAWAIRQDRPHRASMTMAYHVFELIHGMYISATTGQIYELQSTFDRPEALLTGYVDRGFWGPTQESALAF
>NZ_CP014924.1|WP_173585423.1|1345354_1346074_-|DUF554-family-protein
MYIVGIGTIVNTAAVLVGGLIGYIFQQLLNDKLQKTIIQAIGVAVIFIGIAGVLSQMLVVKHGQVGTHGTLMATISLVVGSLIGELIDIDHQFIKLGDWLRRKVGAKSDSLFIEGFVSATLTICIGAMAIIGSLQDAVNHDPTMLFTKAILDGVIVAIYAASFGVGAIFSSIPLFIFQMSITLLAVFINQFLTTAMTNGISLVGSMMIFCIGINLLLDTKVRVANMLPALLVVVGYAMV
>NZ_CP014924.1|WP_065928634.1|1343713_1344310_+|TetR/AcrR-family-transcriptional-regulator
MLKKNHTRRELQKAMLALLTSKPFANITVNDLVKQSHLNRSTFYRCYDDKYDLIRSVEDDFIAKFMVFRKQFGIFNLENDALEAKFEFCRAHAVTIRTLLSVNGDPRFERRLRQEIDRAVDAKFQLKMKNDLDIMAANFAKSSLSGAVMYTIGFIASNPDPKLVVPLEQNMKRLILNGLWQILEEISDPDKEKNPDTK
>NZ_CP014924.1|WP_083215489.1|1342691_1343312_+|TetR/AcrR-family-transcriptional-regulator
MMKTDSKGDAQKEKIVRIAREMFATNGFEATTTRKINQEAGIAEGLMYYYFPHGKRQILDTVVYEGVMARLSTAKFSFRNINSSADLEDQLMACFEKIWANFSDEQLYQSFMITIRERPLLSDKQANWLLDTLDALAGQLSDGLINMTGAFHVPAEQAPALAQVLLAIFQKLIYDQLLIKNDRQLDGSLKSALRPQIQLLLSQIEA
>NZ_CP014924.1|WP_065937557.1|1341211_1342585_+|Nramp-family-divalent-metal-transporter
MVKDDTTKHNNLVQGVSGDGKSLDEVNGSVKVPKNAGFFKTLMAYTGPGILIAVGYMDPGNWITSISGGAQFKYRLLSVILISSLIAMLLQAMSAKLGIVTGKDLAQLTRERTSKGMGIVLWVIAELAVMATDVAEIIGSGIALELLFKIPLIIGILITAADVLLLLVLMKLGFRKIEAIVATLVAVILLVFAYEVALSNPSMSDIIKGYVPTSGILTNHSMLYLSLGIVGATVMPHDLYLGSSISQTRQLDRSDHNDIKKAIKFSTIDSNMQLFIAFIVNSLLLILGAALFFGTNSSLGRFVDLFNALSNSQVVGAIASPMLSMLFAIALLSSGQSSTITGTLSGQIIMEGFIRLRVPLWVQRLVTRLLSVTPVLIFAIIYKGNEAKIESLLTASQVFLSIALPFAIIPLVIFTSDKKIMGEFANRPWVKYAAWISTVVLIGLNIYLLFDEIIGLF
>NZ_CP014924.1|WP_065928633.1|1340208_1340793_+|uracil-DNA-glycosylase-family-protein
MTKADDIFQAIQDDPQNEAFTKAGIQPLYKVMPEAEILITSQAPSRRAQESMLFWDDPSGDRLRDWMGVTREQFYNSGKVAVLPLDFYFPGKGARGDLPPRKGFAEKWHAPLLALMPNIKLNLLIGQYAQKYYLQKRRQKNLSETVKHYADYMPEYFPLVHPSPLNYGWLKQHPWFEAEVVPALQAEVADVFRK
>NZ_CP014924.1|WP_065928632.1|1338743_1339991_-|MFS-transporter
MNVLRSTFSSLQNRNFRYFWFGQCISVMGTWIQRTAQTWLVYQMTGSAFLVGVLTACQFVPILLLTLVAGTVIDRYPKKRILLLTQFGFLLLGLAMTVLIYTKLVQYWEILAIAILYGILQSFDTPTRQSYVVELVGQKDLMNGISLNSTLFNMSKIVGPSLAGILMAQFSVGFCFLVNTISYFAVLLGLFLIHQTKPLASRSRQRMWSDVKYGLSYVWHQPNIRLSAELMLVVSTLNFNNNVIIPIFAKTVLHSGAQVYANLLSASGIGSLIAAFLMSYLSRFGLQRNIYLFVTAGTVCLQTLMLFVHTYWLAMLVMVAVGFCNMIFLNQSNASFQYSIPDNLRGRVMSVYVLLNQGTTPIGSIFVGAVMDIAGGIWGFPSCGILAIVLLIPVVFSQRKLIGSWVRGESVEQGD
>NZ_CP014924.1|WP_056986934.1|1336923_1338318_+|FAD-binding-protein
MTVFKAFSDDQILAFLKDQVKAGTVYTDEATLQKQSFSPNLSGDDSGLALAYIEAGNSDDVKGVLKTARKYHIAVIPQDQFTTTVIGADGVAGSFILSTKKMNQIVEISKADSLAVVQPGVINGDLDEAARKEGMFYAPDPGSKPISGIGGNAATNAGGMSTVKYGATKDNILGMKVVLADGREIKLGGRTLKQAFGYNLTQLFVGSEGTLGIITEITVKLLPIPLGTPTMGIAFFDDMTKLAEGVAAIRISGVYPTMLEALDSATISALDTYEGTHYSENSGAMLIFKIDSSTPETVKVLNDLLAKYQAKDVQVTTDATEQAALEKLRRDMLPAIFAGQNHIMEDMAMPLSKLAPMMDYISEVGTKLNLKIYVAGHAGDGNVHPTIVWPKEVTETPQAVVEALQPMFHKTLELGGTISGEHAVGMLKNQWNNEELGEDVDQIQHQIKALFDPMGILNPKRKIN
>NZ_CP014924.1|WP_054711400.1|1336230_1336719_-|MarR-family-transcriptional-regulator
MEKLTYFKTEIDPALVTLASQLASGDEFEKTWISSRLADPELAAIVDQLSIINMHTLRAIAVHHLINGVALAEKLGVTRGTISKSTKKLLQLALIQQEKHPDNQKEIHYRLTPAGTAINAQHQALDTYLNQQAQQVVSQFSETDLHNIASFLAKMGQIRKRH
>NZ_CP014924.1|WP_065902005.1|1348374_1348845_+|heme-degrading-domain-containing-protein
MKMPTMAEVVAEEATLQFTKFDNQTALTIGNQLVALAQERHAAVTIDITRCRQQLFHAALPGTAIDNDEWLKRKINVVYQFGVSSLHKQLEMTAQGRSIEEASLVNKYQFAAAGGCFPVVLKDTGLIGTIAVSGMASEEDHQLIVDELTAFLTPIK
>NZ_CP014924.1|WP_065902009.1|1350229_1350829_-|sugar-O-acetyltransferase
MTTEWEKCLNGDLYDAHDATFKTHKAQTYTFLNAYNQTAYDSGQARHELLTKYLGAIGHDATIGTPFLCDMAANIYIGNKVSVNMNCSLMDSNRITIDDETMIGPNVQIYTATHPVTVDDRLNADWDAHPEQHFVRTRALPVHIEHQCWLGGGVIVLPGVTIGAGSVIGAGSVVTHDIPAGVVAVGNPCHVVRTLIQQA
>NZ_CP014924.1|WP_065902011.1|1351029_1352004_+|zinc-binding-dehydrogenase
MKAAYIKQLGDASSIQVGELPDPEIQQTDVLVQVEGVAVDHVDTYVRSGAYKTDIAFPHVIGRDMVGQVIAVGSAVTAFKPGDSVWTNAMGYDGRQGVTSTLAAVPADRLAPVPAGVDHLQLIASVHSSATAVIILNDVMQAEFGQSVLIEGAAGHVGAKLVQLAKRMGLNVVTTSNERDFTKLAKFGSQGTFNYHENFAEKVTALLPAGVDHIIDTSGNVDFQTNINLLARNGETTLITAPKSNLFTFNVRDFYMNQKHVNGFVISHASLDQLQQAAKTINAAFSQGLLLDDAILIKHFDDAKWAHAALETGQDKQNRIVLVP
>NZ_CP014924.1|WP_054707633.1|1352416_1352962_-|TetR/AcrR-family-transcriptional-regulator
MKKGQLTREIILDQAVTLAGEKGLNNLTYNGLARAVGIQPQSMYRYVTNIADVKGGVVATYVSHLVTYLYHELLPYSGKDALIQLALKFVSFTQSGLSFNDMVWGISAFGDDPQVAEQMTALHDLSEKLITGITTDQDQVKANTALFLEFIIGHLGLMTASSRPVDQGLFEPNVERVLDLM
>NZ_CP014924.1|WP_065902015.1|1353102_1353939_+|alpha/beta-hydrolase
MTILKRDGADLSYTTTGEGPVLILIPGANGTGNIFTQAAAYFKEHFTVVTYDRRGFGDSKLTQALPDEAADIHSTYRLKTDADDVAALATTLSPDEPVSIMGSSSGSIVAMETLQDHPEIVKQIAFHEPPINSFLPTADQDQADNNAIVKAAFDQDMGAAMKLFGKAMKMGEMDAKMMAKPAVSLDGNDDPAVAGMKFWFQYEIRQYTSRKIDIDQLKQYSDRISLLNGTDSRGSYPQDVNRFLANYWGVTIYDIPGGHLGYAQKPEGFATTLEAIFR
>NZ_CP014924.1|WP_065902017.1|1353951_1354905_+|amidohydrolase-family-protein
MSFNKIDFHAHYLSPGYKKYLKDQFNDMGDGVKTPEYTIDTTLEIMDQVNIDYSLISISSPHINTGDQNGTIELASEVNEYAAEQHAKYPDKIGFLASLPLPYVDASIKAIDNAYANGATGFTLPTNSRGTYVGDPKLDAMMAHLNERHALVALHPNAPANLDPNVAGQIPAPIAEFFFDTTRTVLNMLQNQIFTRYPDIKFIIPHAGAVLPIIANRVSLAQSLNPELTDTQVDIKTAMNGLYFDVAGMVLPQQLPALLQLVDPDKLLYASDTPYTPTPAVLNLADQLETTGLLSETMKAKIFKDNGTTLLDSLNTK
>NZ_CP014924.1|WP_065902019.1|1354976_1355816_-|SDR-family-oxidoreductase
MTNVIVITGGTGGMGFATARKLSSRENTVILLADLNGAALANAKTALAGQAATIETVVCDITSEADVTYMADTAANLGHISGVIHTAGVSPSMGDYRKIIAINALGTVNVDQAFIDLTDHNFSLVNVASMAGYMLPKMMIPKHAYKTVDRDSEILYHRLLQRCQLLPKNRRAQMAYPLSKNFVMWYTEHISPVYGSRGAHVVSVSPGSFDTSMGRLEKDKGAGAMVNYAAIKRFGTPQEVGDLLAYLVTDAPAYLTGTDILIDGGVVGQLRLRDMLSLT
>NZ_CP014924.1|WP_065928637.1|1355969_1356740_+|hypothetical-protein
MSQSFTGNYETDRFTIQLDDAMGEIVLGNGDAQPIDGSVNLFFKKGQLVGVSELAKNRKYDRLASITPGPDVPYQYLARMIADDAIQAGIKLTGEATTTKVPTNQVKPTRAYLDDLLPVLTFMGLSLANAPVTKKGGKPRHSWRQEIATMPFTVDHEGAKATVYWTKRNALVIKAGAQMKAEAPLNKDGSLGFSARFTQQLRDENKASFDQNFVTTTDVQLKSVNEVGLFLYFGGTNSWLQLINADGESIGDLTVA
>NZ_CP014924.1|WP_065902023.1|1359231_1360518_-|phosphopyruvate-hydratase
MTVVIEQVKAREIFDSRGNPTVEADVILSDGTLGRAEVPSGASTGEKEAVELRDGGTRLMGKGVSKAVNNVNTEINAALKGADPFNQGHIDQLMIALDGTPNKARLGANAILGVSMATARAAAIATHQPLYRYLGGTDLELPQTFHNVINGGEHADNGIDIQEFMITPVERTSFRDGFEKIANTYHTLKKVIEKAGYQTGLGDEGGFAPDLNSSEEALQMLHEAIEQAGYTPGKEITIAFDAAASYFYNKNTKNYDFEDKTYTPAELSDYYANLLKTFPEIISIEDPYSEDDWDNFATFTQKYGKQVQIVADDPVCTNPALIRDAISKGMANSILIKLNQIGTVTETLEAIRLARKNGYTTMMSHRSGETGDTFVADFTVATNAAQLKSGAPARSERVEKYNQLLRIEEELGEDSTRLAHFPDDVSFD
>NZ_CP014924.1|WP_054707613.1|1360793_1361042_+|HAD-hydrolase-like-protein
MTNKRVLFDLDGTIINSEQGIVNAIKYAVHQLNRPTMDDATLRRFIGPSLVQGFQDIAGYSHAVALEATEAYREYYRDGRAL

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Crispr_ID: NZ_CP014924_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_7

1579920-1580813

TypeII

Consensus_repeat	Method
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CRISPRCasFinder
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CRT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	PILER-CR

13 spacers

csn2,cas2,cas1,cas9,RT

The CRISPR arrays of NZ_CP014924_7

>merge|NZ_CP014924|7|1579920-1580813|CRISPRCasFinder,CRT,PILER-CR
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCAAGTCGGCGAGTTGTTGATCCACTTAGCTGGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCTTCTGCTTCCCCATTCCTTTCAACGAATCAGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCCAGTTGCTGATGATTCAGCAGCCGAATTAAGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCAATTTTACAATCGCATGCAGGAACTTGGCTGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCCACATCATTATTAAATTTATCGCCGTTAATGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCATCTCGGGGTACAGTTGGATTATCTCGACCGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCACAGTGGTGCGGTTATCGGCAAGCATAACGGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCCGTCCACATTGACATAAGCTGCGGTGTCCTGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCCGCTTGATACCCTGCTCCGTCTCCTGCTCGGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCGGTGCCCGCCGGCTCTTCTTGCAAGTGCTAGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCCAGCGCCAGTTGAACCTTGTGGTTGAGTTTGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCACAAACACCGTGAAGTGAGTACCGTTCTTTGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGCATTATTTTATTCACAAGGTCAAACACGAACGTTTTAGATGAATATCAAATCAATGAGGTTCAAAGT

>NZ_CP014924|7|7|1579920-1580813|CRISPRCasFinder
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	AAGTCGGCGAGTTGTTGATCCACTTAGCTG
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	TTCTGCTTCCCCATTCCTTTCAACGAATCA
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CAGTTGCTGATGATTCAGCAGCCGAATTAA
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	AATTTTACAATCGCATGCAGGAACTTGGCT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CACATCATTATTAAATTTATCGCCGTTAAT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ATCTCGGGGTACAGTTGGATTATCTCGACC
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ACAGTGGTGCGGTTATCGGCAAGCATAACG
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CGTCCACATTGACATAAGCTGCGGTGTCCT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CGCTTGATACCCTGCTCCGTCTCCTGCTCG
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	GGTGCCCGCCGGCTCTTCTTGCAAGTGCTA
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CAGCGCCAGTTGAACCTTGTGGTTGAGTTT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ACAAACACCGTGAAGTGAGTACCGTTCTTT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ATTATTTTATTCACAAGGTCAAACACGAAC
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGT

>NZ_CP014924|7|1|1579920-1580813|CRT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	AAGTCGGCGAGTTGTTGATCCACTTAGCTG
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	TTCTGCTTCCCCATTCCTTTCAACGAATCA
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CAGTTGCTGATGATTCAGCAGCCGAATTAA
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	AATTTTACAATCGCATGCAGGAACTTGGCT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CACATCATTATTAAATTTATCGCCGTTAAT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ATCTCGGGGTACAGTTGGATTATCTCGACC
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ACAGTGGTGCGGTTATCGGCAAGCATAACG
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CGTCCACATTGACATAAGCTGCGGTGTCCT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CGCTTGATACCCTGCTCCGTCTCCTGCTCG
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	GGTGCCCGCCGGCTCTTCTTGCAAGTGCTA
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CAGCGCCAGTTGAACCTTGTGGTTGAGTTT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ACAAACACCGTGAAGTGAGTACCGTTCTTT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ATTATTTTATTCACAAGGTCAAACACGAAC
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGT

>NZ_CP014924|7|1|1580184-1580483|PILER-CR
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CACATCATTATTAAATTTATCGCCGTTAAT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ATCTCGGGGTACAGTTGGATTATCTCGACC
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	ACAGTGGTGCGGTTATCGGCAAGCATAACG
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC	CGTCCACATTGACATAAGCTGCGGTGTCCT
GTTTTAGATGAATATCAAATCAATGAGGTTCAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_065902176.1\|1570844_1571408_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP014924.1\|WP_056987200.1\|1581561_1582284_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP014924.1\|WP_065902174.1\|1569386_1570769_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014924.1\|WP_082409248.1\|1578909_1579230_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP014924.1\|WP_065902178.1\|1572519_1573416_-\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238502
NZ_CP014924.1\|WP_065937575.1\|1573716_1577823_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP014924.1\|WP_065937574.1\|1566901_1568626_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP014924.1\|WP_054711023.1\|1588028_1588688_+\|thiaminase-II	unknown	unknown	gnl\|CDD\|381699
NZ_CP014924.1\|WP_054711026.1\|1589243_1589732_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP014924.1\|WP_065902185.1\|1581155_1581407_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP014924.1\|WP_173585422.1\|1582390_1583116_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
NZ_CP014924.1\|WP_065902181.1\|1578020_1578947_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP014924.1\|WP_054710691.1\|1571723_1572281_-\|TIGR01440-family-protein	unknown	unknown	gnl\|CDD\|237472
NZ_CP014924.1\|WP_065902183.1\|1579226_1579892_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP014924.1\|WP_162258244.1\|1591731_1592553_+\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP014924.1\|WP_065902187.1\|1583115_1585137_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP014924.1\|WP_065902170.1\|1565015_1566902_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP014924.1\|WP_056987203.1\|1590206_1591337_+\|vitamin-B12-independent-methionine-synthase	unknown	unknown	gnl\|CDD\|180482
NZ_CP014924.1\|WP_056987202.1\|1586231_1586939_+\|aquaporin-family-protein	unknown	unknown	gnl\|CDD\|223653
NZ_CP014924.1\|WP_065902188.1\|1587022_1587790_+\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|180761

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_065902176.1\|1570844_1571408_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.31489e-22
NZ_CP014924.1\|WP_056987200.1\|1581561_1582284_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.87556e-18
NZ_CP014924.1\|WP_065902174.1\|1569386_1570769_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.00744e-170
NZ_CP014924.1\|WP_082409248.1\|1578909_1579230_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.62079e-26
NZ_CP014924.1\|WP_065902178.1\|1572519_1573416_-\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238502	cd01020, TroA_b, Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	5.13243e-100
NZ_CP014924.1\|WP_065937575.1\|1573716_1577823_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	9.98668e-134
NZ_CP014924.1\|WP_065937574.1\|1566901_1568626_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.66902e-149
NZ_CP014924.1\|WP_054711023.1\|1588028_1588688_+\|thiaminase-II	gnl\|CDD\|381699	cd19364, TenA_C_BsTenA-like, TenA_C proteins similar to Bacillus subtilis TenA. This family of TenA proteins belongs to the TenA_C class as it has a conserved active site Cys residue; the double Glu residues identified in the active site of TenA_E from the archaeon Pyrococcus furiosus is conserved in this family. TenA_C proteins (EC 3.5.99.2) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway. This family includes Bacillus subtilis TenA which has been shown to be a thiaminase II, catalyzing the hydrolysis of thiamine into HMP and 5-(2-hydroxyethyl)-4-methylthiazole (THZ), within thiamine metabolism. It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect.	4.36317e-126
NZ_CP014924.1\|WP_054711026.1\|1589243_1589732_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.64203e-13
NZ_CP014924.1\|WP_065902185.1\|1581155_1581407_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.66855e-09
NZ_CP014924.1\|WP_173585422.1\|1582390_1583116_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	2.80955e-116
NZ_CP014924.1\|WP_065902181.1\|1578020_1578947_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.74247e-80
NZ_CP014924.1\|WP_054710691.1\|1571723_1572281_-\|TIGR01440-family-protein	gnl\|CDD\|237472	PRK13690, PRK13690, hypothetical protein; Provisional.	1.71017e-99
NZ_CP014924.1\|WP_065902183.1\|1579226_1579892_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.2251e-54
NZ_CP014924.1\|WP_162258244.1\|1591731_1592553_+\|HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.7525e-40
NZ_CP014924.1\|WP_065902187.1\|1583115_1585137_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP014924.1\|WP_065902170.1\|1565015_1566902_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP014924.1\|WP_056987203.1\|1590206_1591337_+\|vitamin-B12-independent-methionine-synthase	gnl\|CDD\|180482	PRK06233, PRK06233, vitamin B12 independent methionine synthase.	0
NZ_CP014924.1\|WP_056987202.1\|1586231_1586939_+\|aquaporin-family-protein	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	1.36466e-61
NZ_CP014924.1\|WP_065902188.1\|1587022_1587790_+\|glucose-1-dehydrogenase	gnl\|CDD\|180761	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	7.56355e-116

>NZ_CP014924.1|WP_065902183.1|1579226_1579892_+|type-II-A-CRISPR-associated-protein-Csn2
MNLTYYSLKPISIKRKCLTVIDIGNVKVYWDFIQGLNELNDSIKTSTDDLELKDPHQLCTFYGDLLTLDLNKVFERKVSQHVVDEMSQEEQVKLIDMVQGLNSQLLNDLFVFDLPLMVEIPSITDIIKLLGLRLDSEVIKSPFEKTETLIKVLVELGIDRTPIILNASHYLTKKDINQFCQVISYTDLSCIFIEFSENQRKSLFENADYYYIDPDFMLWHK
>NZ_CP014924.1|WP_082409248.1|1578909_1579230_+|CRISPR-associated-endonuclease-Cas2
MRYRVVRLMVLFDLPVDTTEDRRNYRHFRKKLIREGFYMMQYSVYVRVCATRQSAKFLERRIANNVPESGLVQTLIVTEKQYQDMHFLAGEENHDIINSGERTIVI
>NZ_CP014924.1|WP_065902181.1|1578020_1578947_+|type-II-CRISPR-associated-endonuclease-Cas1
MAWRTIIVSRHAKISLSANNIVIQTDQDRFHVPVSDIDVLMLSTLQGVITTAAINALNRGQAVIIFIDESGNPSCEIQTTSSPRRNAHRITQQVNWIKERVERLWTLIVTSKIKNQLAVCEHLDCPNLIIETALNEIEINDVSNREAVAARAYFPAIFGKGFSRDELNEKNAALNYGYAIIHSLINREITIRGNMTCIGIHHDRTDNQYNLGSDLMEPFRPIIDQWVATHGIVTSTFKFNEFTPDIKYGLVDLLNLELVFNGKKGLLRNIIGDYVNDCLRFLNQEINHINVEVTIPNEVSSREINGFI
>NZ_CP014924.1|WP_065937575.1|1573716_1577823_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MDKKYSIGLDIGTSSIGFVGVDENGWPLNIKGKRAIGAHLFREGEAAAETRGFRTTRRRYNRRKWRLRLLREIFDEPISRVDPTFFARMKESSVSPKDPNYDGLAKEILIPRDKDGKILYPTIYHLRHALMYEDHQFDIREIYLAIHHIVKYRGHFLLDGAAKNFESSNLDLKSDIHEINAILVGIFGNEQVQFNDQYVEKLKEVLLDSTQSRSDRQKAAAKVLLPTNDLDKDTTKILKTVSTEITKAITGLKAKFFVITGNDIAKDQQKDWTFSIDTLDEKMSVIEPSFSEKNFSLITILQKLYSSVTLAGIVPNGLSLSEAMIQKYDRHASDLVLLKKYWDTKPKVLKHQLQNTYAEYIEIHQVVDEFYSDLSKLIKNDDDTLAQEIKSKITIGNFLPKQRTTENGVIPYQLQQRELDTIIKNQQEYYPWLAEENPVADHQIAFPYKLDELVGFRIPYYVGPMIAKEDTSNSKNSKFAWMIRKQSGEVTPWNFDEKIDRTASATAFIDRMTTTDTYLIGEDVLPKQSLIYQRFEVLNELNKISIDGQPITRKQKQSVYTHVFEKKKTVQVKDVQKFLVSSGEVMSLPKIGGLANEKQFNSSLSTLYDYNKIIPDALEDRNKVDDIEKIILWSTIFEDNSIFVEKLDSIDWLTSSQRKRLAQKRYRGWGRLSLRLLTTFKNKDGYSILDELWNSNHNFMEIQAQSDFSEQIATANNNNLSQVLPAKWEPGRKNLASLDEFISNLYTSPQNKKALRKAIRVVQDMMTAAGHMPEKIFIEVARDTSNSHQQTIARQRQLQQLYQSEAKEVIDSSVRSELDDILKNRANIKDQLFLYFQQGGRDLYTGKAINIDKLSLYHIDHILPQSLVKDDSLDNRVLVSQKTNEDKGVTFVSDKYMNNMLPTWKRWHEMGLISARKLKNLTMRPDEIDKYAPGFIQRQLVETRQVTKLVIELLDALLGNSQTEIITIKASLSHQFRQQFDLVKIREVNDNHHAFDAFLAARIGTYLYKRYPKLRPYFVYGQYMQNHKNLKSINLIKTLDSDKAIVDEGTGEILWDKKSDLAKMIKIYNYQRLLITHESRTSFGAMYKQKILKATDAKQNGGGFKLVPTKRNWPVDIYGGYTGQTAAYLTIVRVYSKKTSELRVLPIYTNKVQQIEKAMTQGDKATMLAFKKVIAPQLGKENKKTHEIKIPEFDVVIPKVLLDQLVIDDIAGSPHRFRLGTDTYYHNSQQLFLPLSMQRQLMDRESDDKVYLDIFNDVLKQVDSYFNLYDVNGFRAALQKSKKAFEQLPINDFPKDVPDNKKKKGKRSILKEIFIGLHANATLGNLKQMGIKTDFGKLQKSNGLRITENCKIIHQSPTGLFERIVPIK
>NZ_CP014924.1|WP_065902178.1|1572519_1573416_-|zinc-ABC-transporter-substrate-binding-protein
MFRVLSALSIILVAVLLTSCTSKTASSITKHPSKIHVVTSLDFYGETSKAVLGNKGTVKSIINKPSMDPHEYEATTKTAKIVSDADVIIYNGLGYDTWMTRIATDTTHTTKINVGQTVMGKPVDANQHIWYNLKTMPTLAKYLVKKYSKLQPQNKAYFEKNAKNYIASLKPLQQKLNQLKKNANGAEVDVSEPVFDYTLNDLGYKVADTGYSMAVENDTDPSPAEIKAMQQDIKTHKIKFFVVNTQEINQITKNMMTLAKKDGVPILKVTESMPAGKTYESWMMSQFKQLEKIQKAVK
>NZ_CP014924.1|WP_054710691.1|1571723_1572281_-|TIGR01440-family-protein
MDLETIKNQLTQALSDYFDKVHLPENGLFVLGCSTSEVTGAWMGHASSQDVGDAIIDTLLPILGAHHVALAVQGCQHINRALLMEREVADRRGYEIVSVVPSLHAGGAAQIAAYRTFKDPVEVEHIVADGGMDIGDTQIGMHVKFVQIPIQTSVKEIGEAHTTFLTSRPKLIGGARAIYEFPDEI
>NZ_CP014924.1|WP_065902176.1|1570844_1571408_-|MarR-family-transcriptional-regulator
MSTETSQLFGVFAHLFHETRHMTGHIKKSDLHSHRHPNPGQLRVIFLLAKNPQMTNSEIVEKLSIKPSSASGLVNRLVEGGLVQRHASPKDKRIMLISLTARGQRFLDSAHELRDKLSEVIFASLTDEEQAQLLHLLKKLSDDMADKLPTWESSRVMHDFFEQHQEFKEDLDHFGFSQTNTMPTKIE
>NZ_CP014924.1|WP_065902174.1|1569386_1570769_+|group-II-intron-reverse-transcriptase/maturase
MQQPQNTEKADRRRTVGLEAQEQVGVRSTDSGENTMMNGTKFQELVLDRNNLNEAYLRVCRNKGAAGLDGMTVDELLPYLRKHKQELLQALQNETYRPRPVKRVEIPKPNGGKRKLGIPTVIDRLVQQAMAQVMVPTFERVFSDNSFGFRPNRSAKDAIDRVVQFYNQGYHYVVDLDLKAYFDTVNHDLLIKFIEQYITDLWILHLIRRFLTSGVMNGGLFERSDKGTPQGGPLSPLLANIYLNELDKLLTSRGHKFVRYADDCNIYVRSKRAGERVLTNVTRFLEGDLKVTVNEDKTSVSSPLRAKFLGFSLEVGRGGAYARPAWQAKQRIKSALRKMTKRNRGVSLNLVFNEIHQKMRGWLQYYSVGKMTNFIRHLDEWLRARIRQYIWKQWKKLKTKVNHLVKLGLSGTSAYTMANTRKGYWRTAHSKTLTYTLTNKRLERLGLINMSKTLQSIQSA
>NZ_CP014924.1|WP_065937574.1|1566901_1568626_-|ABC-transporter-ATP-binding-protein
MLKIAKGRISYTAVLGAVLFMIVQVFANLNLPNLTSDIVNNGVAKGDISYIWKIGVQMVGYSLLSIAAAICNVFLAARTSQKLGQNLRTDIYSKVIHFTNDEYDQIETSSLITRTTNDVVQIQNVAMMMLRMMIMAPIMLIGASFLAYSKDHQLTMIFLVSIPLLAIFMGIMLRFAVPMFQAMQTKTDRINRVFREGLTGVRVIRAFRQDQFEQDRFEDANVDYTKNAINVNTIMALALPVMTLIMSGTNVAIIWFGAKLIGGQAMQVGNLIAFMTYATQILMSFMMLSMVLIFIPRAQASAKRIQAVFNLKSTMTVPDTPAELDDKSADHSLAFNHVTYRYRNAEQPALTDIDFSATSGQTVAIIGGTGSGKTTLINLIPRFYDVEKGDIELDGTNISKLDTTQLRNAVSLVPQKATLFTGSLRDNMKYGKPDATDDEIWHALDIARARDFVEEDPDGLDMYGGNFSGGQRQRLAIARALVKQSSVYVFDDSFSALDFKTDADLRAALRADKHIQQSITVIVAQRIATVADADLILVMDNGKLVGKGTHDELRKTNTVYQEIIHSQLREEDDK
>NZ_CP014924.1|WP_065902170.1|1565015_1566902_-|ABC-transporter-ATP-binding-protein
MADKETPRPQQQRGMMGGHGPGNHGGLVEKPKNFWGTTRRIMSYMSDRLVGLCFVLAFAIISVIFQIRTPKILGQATTEIFKGVMKGQSEQKAGFSIAGLPINYEKIVHIILIVGLMYAASAIFSFLQQYIMTRISQQTVYKLRKFMKQKMRVVPIKYYDTHSNGDIMSRAVNDMDNIASTLQQPLTQAVTSTVTFIGTLWMMLTISWKLTLIALVTIPLSLIIVGIVAPRSQKFFAAQQKSLGLLNDQVEENYAGQQVLKSFNKEDNTIESFEVQNKNYYQAAWKAQFISGIIMPLMIFLNNIGYVFVAVIGGIGVSNGSITLGNVQAFLQYTNQFSQPISQLANLMNTIQSTIASAERVFEVMDEEEMKDTKENRDVEDTSNLIELEHVQFGYEDELLMTDYNLTVKAGQQVAIVGPTGAGKTTIINLLERFYDVKGGAIRLNGTDTRDLDREDLRSHFAMVLQDTWLFTGTIYDNIKYGRENATKDDIMNAAKAAHVDEFVRKLPDGYDTILNEEASNISQGQRQLVTIARAFVANPEILILDEATSSVDTRTEVQIQHAMSELLKNRTSFVVAHRLSTIQNADNIIVMNHGAVVETGTHNELLAQNGFYATLYNSQFSDNVSFD
>NZ_CP014924.1|WP_065902185.1|1581155_1581407_+|helix-turn-helix-transcriptional-regulator
MQLDELIKINRMKKRLTQKQLASIMIFSRQTISRWENRDVNFKIATILALSGALSVDSWTFDVSEKESVYIEIHRMNHTDSDK
>NZ_CP014924.1|WP_056987200.1|1581561_1582284_+|helix-turn-helix-transcriptional-regulator
MQLGEQLKTQREKLQMTQQDLAERLHVTRQTVSRWENNATYPNLDTLVDISDVLNISLDDLLKGDDAKVVTEISHDVKTKNRYKKFTITIGAIFGLIIIGLGILSYGRGTQNDTIDRINPFLSTTRGFAVLPQKTPTKMEKVTETNTKGHNVKRRTAVPQPVTAHVVENGFGGGEWLTFSVGEIPSKGMNFAYVQHKGSFVSQATLIHRNDVPKLIRAQLGDYHAYDKRYDWPKSSWSPF
>NZ_CP014924.1|WP_173585422.1|1582390_1583116_-|transaldolase
MVATPTFKIKIYSDGADLSDMQAINKNDFVTGFTTNPSLLKKAGVTNYLEFAKKTVATFPDEPISFEVFSNDFPTMEKEAHLLHDLGKNVYVKVPIRTTDGQSTAELIHNLTAAGVQVNVTAIATTDQVAESLAAIEPGTPSIVSIFVGRVADTGADPRPFVEESVALTAKRDEVELLWASTREINNIYQAQEAGVDIITVPPAIIAKLVSHFGQTGDDVTMNTVKGFEADIKATGLHILG
>NZ_CP014924.1|WP_065902187.1|1583115_1585137_-|transketolase
MQNTSLDQRSINALRFLSVDMIEKANSGHPGLPLGVAPMAYTLWTKHLNINPTDQKWVNRDRFVLSAGHGSALLYSLLHLSGFNLSIEDLKQFRQFQSKTPGHPEYGIVDGVEATTGPLGQSLGMAVGMAMAENHLAAQYNQPGFNIMDHYTYVISGDGDLMEGVSHESASLAGHLKLGKLIVLYDDNNISLDGPTSMAFTENVSERFEAYDWQVLHVADGNNMAEINAAIETAKANPNQPTLIDVKTIIGFGSPVAGTNTVHGKPLGEANMAATREALGWHYAPFEVPEDVTDNFKSNVKNRGIDAEADWTNLFDEYTRQFPELAERFLNGFKPVHFDLDLPVSHVGEKESGRNTSQRIIGAISQQLPSFWGGSADLFASNKTNIKTATACEANAPAGQNIWFGVREFGEATAVNGMILHGGIHAFASTFFVFSDYMRAAIRLAAIQQIPATYIFTHDSVAVGEDGPTHEPIEHLMSFRAMPNVNVIRPADTNETTAAWRVALAASNTPTILVLSRQDLPTLPLTETLADEGVKHGGYVLSPSKGDVPEGILIATGSEVHVAVAAQTQLREQGHDVSVVSMPSFELFDAQSAEYKESVLPSAVTKRVSIELGTTMGWEHYIGLNGIALGINNRFGESGNPQTIIDSFGITPENTATAFLSLISEKQSVREGQ
>NZ_CP014924.1|WP_056987202.1|1586231_1586939_+|aquaporin-family-protein
MNGFIGEFFGTMVLILLGAGTGASMNLNKTYAKGSNWLYASLSWGIAVTMGVYVAGMLGSQGHLNPAVTIPYAIFGLFPWHDVLPYLLGQFLGAFVGATLVMIQFYPHFKASSDEAAGNSVGIFATRPAIKSPVFNLLSEIIATFAFVFILLNLGNFTQGLKPLIVGLLIMVVGTGLGTTTGFALNPARDWAPRFAYTIWPVPHKGNAEWGYAWVPMCGPLIGGLIATGLETLLK
>NZ_CP014924.1|WP_065902188.1|1587022_1587790_+|glucose-1-dehydrogenase
MFDQNSFSLAGKVALITGGAHGLGQFYSIALSEYGADIFVVSASQRGWDETKEKVEANGQQVAFLQQDITDPDAADAIVQAVIEKFGHLDILVNNAGIQLRNDVLEFKDEDWRKVIDVNLNGLYYLSHAAAKVMSDQQHGKIINIGSMQSYRAGKRIFPYAASKHAVMGLTKAYADALAPYHIQVNGLAPGYISTDMTKPLQEDPVRGPEIAAHIPSGDWGKPEQLMGPMVFLASAASDYVTGVMLPVDGGYLLR
>NZ_CP014924.1|WP_054711023.1|1588028_1588688_+|thiaminase-II
MTTFTTQIHTAAEPCWQKSFDHPFVHEIGDGSLPNDVFRYYLIQDRYYLNEFGKLHEKIAEKLTDKEDVDFLMAGAQGLKDGEIAVREGFFDRLGITPDEIAHTPMAPTAYNYVNHMYSELDRGTPGRAIAGLLPCYWLYNEIGQRLIAAGSPVELYERWIETYDSDDYTDSVNTMIQLTNKTADNADDTERAQMQDSFVRSSAYELAFWQMAMDKQAW
>NZ_CP014924.1|WP_054711026.1|1589243_1589732_+|GNAT-family-N-acetyltransferase
MKIQNITANNDAEMAAILRTDLEDLNLNLPGTAYFDPFVDHLSAWYDKTPNATYYVAISDDQHVMGGCGVGPIAPEDGIAELQKLYVSPDYRRQGVAKSLIPECFAYAKAHYDYLYLETFHQMIAANTLYQSLGFDQLTKPLPQSEHGACDTWYLMALGEHK
>NZ_CP014924.1|WP_056987203.1|1590206_1591337_+|vitamin-B12-independent-methionine-synthase
MTESTLTKFPYRFDVVGSLLRPADLKQAHKDLAEGKITAADLQKIQRDETKRVVEEQANLGLKAVTDGEFNRSWWHLDFLWSLTGVDKYDYHQSYKFKGDTTRTDNVELTGKVAVNLDHPFFESFKYLQSIVPEGVLVKQTIPSPTMLFRDNRSDNWSKFYDSWDEYLTDLSNAYRDTILHFYELGDRYIQLDDTTWAFLISKLNETADQPEEHAKYVKLAEDSVKVINGAIRDLPDDLTVTTHICRGNFKSTYLFSGSYDDVADYLGQLNYDGLFLEYDSERAGSFAPLARIWNNDPNKRLVLGLITSKFPELEDKDAVISRIQEAAKSVPLDNLALSTQCGFASTEEGNELTETQQWAKLNLVKEIAETVWPED
>NZ_CP014924.1|WP_162258244.1|1591731_1592553_+|HAD-IIB-family-hydrolase
MIKLVAVDMDGTFLRDDRTYDKARFLDLFKRMQQNHIHFVAASGSQYQRLRHEFTEVADNMDFISQNGAIVHQGDQLKEIMPLSDQQVHGVIATISHLFAEQDVSQEVVSGLNGTYVNADMDPEALKIVKYYYRPVISVHSLAQLVGQKVNDQFTKIAVNFTEGVDFQHARTVLKAQLPDFLSSENSGFNTELIGLKEATKRSGIQALQTLYNIADDEVMTFGDNENDLSMLTMTPHSYAMKNAAAGIQQQAGNVTQFDNNHDGVLAAMAEAL

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Crispr_ID: NZ_CP014924_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_8

1633604-1633723

Orphan

Consensus_repeat	Method
CCTTCCTGAACGCGTTTCCACTAGAGAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_8

>merge|NZ_CP014924|8|1633604-1633723|CRISPRCasFinder
CCTTCCTGAACGCGTTTCCACTAGAGAAAAGTAGAAATCAGTAGCCGAAACCAATCTAGCAAAGAGACCCATAATCAAAGAACCCACCAACCTTCCTGAGCGCGTTTCCACTAGAGAAAA

>NZ_CP014924|8|8|1633604-1633723|CRISPRCasFinder
CCTTCCTGAACGCGTTTCCACTAGAGAAAA	GTAGAAATCAGTAGCCGAAACCAATCTAGCAAAGAGACCCATAATCAAAGAACCCACCAA
CCTTCCTGAGCGCGTTTCCACTAGAGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_065937576.1\|1623579_1624998_+\|arginine-ornithine-antiporter	unknown	unknown	gnl\|CDD\|163522
NZ_CP014924.1\|WP_054711140.1\|1642449_1643442_+\|ketopantoate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224805
NZ_CP014924.1\|WP_065937698.1\|1638281_1638728_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_CP014924.1\|WP_054711141.1\|1640585_1641317_+\|DUF4811-domain-containing-protein	unknown	unknown	gnl\|CDD\|374344
NZ_CP014924.1\|WP_054711136.1\|1644737_1645673_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP014924.1\|WP_065937697.1\|1629899_1631039_+\|acetylornithine-transaminase	unknown	unknown	gnl\|CDD\|179505
NZ_CP014924.1\|WP_056987212.1\|1620230_1621226_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|376556
NZ_CP014924.1\|WP_083215505.1\|1637531_1637999_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176128
NZ_CP014924.1\|WP_054711145.1\|1629141_1629891_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NZ_CP014924.1\|WP_065937578.1\|1627913_1629128_+\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	unknown	unknown	gnl\|CDD\|239065
NZ_CP014924.1\|WP_083215504.1\|1637107_1637497_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP014924.1\|WP_065937579.1\|1633920_1635279_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469
NZ_CP014924.1\|WP_065937699.1\|1639131_1640589_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP014924.1\|WP_056987215.1\|1631880_1632150_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|178923
NZ_CP014924.1\|WP_065902193.1\|1621703_1623086_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014924.1\|WP_065928431.1\|1632159_1633503_+\|PFL-family-protein	unknown	unknown	gnl\|CDD\|180009
NZ_CP014924.1\|WP_065937577.1\|1625347_1626292_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP014924.1\|WP_054711147.1\|1626855_1627890_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP014924.1\|WP_054711134.1\|1645672_1646521_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP014924.1\|WP_065928428.1\|1643656_1644757_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_065937576.1\|1623579_1624998_+\|arginine-ornithine-antiporter	gnl\|CDD\|163522	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP014924.1\|WP_054711140.1\|1642449_1643442_+\|ketopantoate-reductase-family-protein	gnl\|CDD\|224805	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].	3.09045e-60
NZ_CP014924.1\|WP_065937698.1\|1638281_1638728_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.10399e-32
NZ_CP014924.1\|WP_054711141.1\|1640585_1641317_+\|DUF4811-domain-containing-protein	gnl\|CDD\|374344	pfam16069, DUF4811, Domain of unknown function (DUF4811). This family of proteins is found in bacteria. Proteins in this family are typically between 188 and 241 amino acids in length. There is a single completely conserved residue Y that may be functionally important.	4.12946e-46
NZ_CP014924.1\|WP_054711136.1\|1644737_1645673_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.10158e-75
NZ_CP014924.1\|WP_065937697.1\|1629899_1631039_+\|acetylornithine-transaminase	gnl\|CDD\|179505	PRK02936, argD, acetylornithine transaminase.	0
NZ_CP014924.1\|WP_056987212.1\|1620230_1621226_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|376556	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase. This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.	1.16074e-21
NZ_CP014924.1\|WP_083215505.1\|1637531_1637999_+\|hypothetical-protein	gnl\|CDD\|176128	cd08437, PBP2_MleR, The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold. MleR, a transcription activator of malolactic fermentation system, is found in gram-positive bacteria and belongs to the lysR family of bacterial transcriptional regulators. The mleR gene is required for the expression and induction of malolactic fermentation. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.52999e-32
NZ_CP014924.1\|WP_054711145.1\|1629141_1629891_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	9.44239e-83
NZ_CP014924.1\|WP_065937578.1\|1627913_1629128_+\|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ	gnl\|CDD\|239065	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. Members of this family may experience feedback inhibition by L-arginine. The active enzyme is a heterotetramer of two alpha and two beta chains, where the alpha and beta chains are the result of autocatalytic cleavage. OATs found in the clavulanic acid biosynthesis gene cluster catalyze the fifth step only, and may utilize acetyl acceptors other than glutamate.	0
NZ_CP014924.1\|WP_083215504.1\|1637107_1637497_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.05849e-16
NZ_CP014924.1\|WP_065937579.1\|1633920_1635279_-\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NZ_CP014924.1\|WP_065937699.1\|1639131_1640589_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.08876e-101
NZ_CP014924.1\|WP_056987215.1\|1631880_1632150_+\|ACT-domain-containing-protein	gnl\|CDD\|178923	PRK00194, PRK00194, ACT domain-containing protein.	2.49358e-37
NZ_CP014924.1\|WP_065902193.1\|1621703_1623086_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	8.31859e-171
NZ_CP014924.1\|WP_065928431.1\|1632159_1633503_+\|PFL-family-protein	gnl\|CDD\|180009	PRK05313, PRK05313, hypothetical protein; Provisional.	0
NZ_CP014924.1\|WP_065937577.1\|1625347_1626292_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.41853e-07
NZ_CP014924.1\|WP_054711147.1\|1626855_1627890_+\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	2.11762e-154
NZ_CP014924.1\|WP_054711134.1\|1645672_1646521_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.75058e-72
NZ_CP014924.1\|WP_065928428.1\|1643656_1644757_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	9.1124e-145

>NZ_CP014924.1|WP_065928431.1|1632159_1633503_+|PFL-family-protein
METKQIQETIQMISEERLDIRTITMGISLLDCIDSDGAKARQKIYDKLTTSAKDLVKVADQIQAEYGIPIINKRISVTPISIVAAASGDSDYVAYAQTMEKATETLGVDLIGGFTALVQKGYQSGDRKLIASIPEALNVTSRVCSSVNVGSTKAGINMDAVAQMGRVVKDIAAIDPVNCMSLVIFANAVEDNPFMAGAFHGVGEADKVINVGISGPGVVKRALEQVKGQPIDTVSETIKKTAFKVTRMGQLVGNVAAERLHVPFGIVDLSLAPTPNEGDSVAEILEEIGLESVGAPGTTAALALLNDAVKKGGVMACEHVGGLSGAFIPVSEDAEMIRAVSAGRLNIEKLEAMTAVCSVGLDMIAIPGDTPAETISGMIADEAAIGVINNKTTAVRVIPAVGKKVGESIDFGGLFGTAPIMPVNTNSPKQFVDRGGRIPSPIHSFKN
>NZ_CP014924.1|WP_056987215.1|1631880_1632150_+|ACT-domain-containing-protein
MKAIITVVGQDQVGIVAAVSSTLSDLKINITDISQTLMHGSFTMMLMGEWDEEDTAFATAQETLNALGESRHLDIRIQRQELFDAIQKL
>NZ_CP014924.1|WP_065937697.1|1629899_1631039_+|acetylornithine-transaminase
MTHVFPTYARFPFELVDGKGVTLTDNNGKQYLDFTSGIGVCNLGYQNPAVTSAVEDQVKKIWHISNLYENHLQEAVAKLLVKDEDKLVFFANSGTEANEAALKLARKATGKTAVLSFNHSFHGRTYGAMSMTGNAHIQEGFFPMVPDIRFADYNDDASLAKITSDLAAVILEVIQGEGGVINGDPDWLKAVQAKCQEVGALLIIDEVQTGNGRTGYQFAYQGVGLDPDIVTTAKGLANGLPVGAMIGKASLGAAFGPGTHGSTFAGNPLTMASAKATLEQLTPEFLQDVQDKADAVWAQLANFKDLAVVQSISGKGLMIGIHLTDDVQVNDVIVKLQNKGLLTLSAVGNTLRLLPPLVMTPGDLKQGLTTIYETLNDLN
>NZ_CP014924.1|WP_054711145.1|1629141_1629891_+|acetylglutamate-kinase
MMNLIIVKIGGNAIHSLTPDFFEQLKTWRQAGKKVLLIHGGGPQISQLAEKLSIPTVKKNGIRVTDEATLSLTKMVLLGNAQPELLTRLNQAGLAAVGLNAADEHLLSGNFINKDEYGNVGQISAVNEIALSKLLTDQIGVLAPLALTSEDSWLNVNADTAAADIARLLKASQLYLLTDVPGVLRGGEVVSQLIPQDVQTLINKKVITAGMQPKLLAACAAIHAGVHSVRITDRLTHHGTILQEVVSEP
>NZ_CP014924.1|WP_065937578.1|1627913_1629128_+|bifunctional-glutamate-N-acetyltransferase/amino-acid-acetyltransferase-ArgJ
MTQDEESSINQISFTWPKGFYNDGIKIGLGTVDKKDFGYLFSQVPAAAAGTYTTNKFQAAPTKLTKETINVDHKLQAVILNSAIANSCTGAQGTKDAHTEQQWLADALNIDTNLVGVASTGLIGAYLDMDKIKAGLPKLQPKTGDDVSQAILTTDKKPKQACVQVTLDGKTVTITGFAKGSGMIHPKMATMLGFVTTDAAIDGDLLQATLSAGVDTTFNQITVDGDTSTNDMVVVLANGMAQNTELKTTTDADYDTFAAGLHFVLGELAKQIAADGEGATKLIEANVTEALNPTEAQSVAKAVVGSSLVKAAIFGDDPNWSRIIAAIGMVDATMDIDHVAISANGIPLVKDSVALPFDETMVSESMKTSKVTIDVSLNSGTATGQAWGCDLTYNYVKINASYHT
>NZ_CP014924.1|WP_054711147.1|1626855_1627890_+|N-acetyl-gamma-glutamyl-phosphate-reductase
MNVAIVGVTGYSGTVLYSLLANHPEIEKINLYGHTDEGENGTVRYLDELLPQFHGEHVAIQAFDPAQIMADNQAVFFATSSGVSSQLAVPFAEAGFPVIDLSGDYRLDAKQYEQWYHKPAATTSALKKAAYSLADFYDTDAKYIANPGCYATATLLGLAPLVQQDLIDPDSIIVDAKSGTSGAGKKLSQITHFTEANDNLQLYKLDTHQHIPEIVQQLQVWNDKVQAIEFNTTLIPVTVGIMATIYAKPNPGQDQASLVKAFETTYADHPFIHVMDGEVPALKDAVGSNNCDLGVKYNPKTNTVMVVSVIDNLMKGAAGQAVQNFNHMFHYNETTGLPKFPAFS
>NZ_CP014924.1|WP_065937577.1|1625347_1626292_+|alpha/beta-hydrolase
MTTYENQQAWRDVQSFLPEQYHYTENYKPVEENWNWHGNQVHLDTFRNPDAKAKIIEFHGVGTNGRQISMIVGGPLAQDGYETIAVDMPTYGVTDVAPHTIISYDDWVQCGSDLIDAELAKDDRPIFLYGLSAGGMETYHVAARNKKVAGIIGMTFLDQRSKDVQMTTTNNWFWGTFGIPMTGMAVHIGLSAFKMKMSIPSKMSALVNDPACLKIMLDDKTSGGNKVSMRFMNTYMTYAPDIEPENFDVCPVLLTQPDADKWTPQRLSDPFLDKITKVKVTRTTLRNGSHYPIEATALTDLHREILNFLHENNA
>NZ_CP014924.1|WP_065937576.1|1623579_1624998_+|arginine-ornithine-antiporter
MATQPKKINGAALTALVVTTAIGSGIFALSSDLAAAASPGAALISWLIVGFGVMMLASCFNNLLTKRSDLEGIFAYGKEGFGPFVGFISGSGYWMSSWLGNVAFATVCMSALGYFFPVFSKDNSPISILVASILAWSLTLLVNHGIESAALMNAVITICKLIPIFTFIVVAAILFKGHVFTAQFWGNMTAPVTIASVGGQIKQCMMIMMWVFVGIEGATVLSSRAKSRKTAGRATVIGVACLILIYVLASILPYGYMTRAELIQLKQPAMVYMFQHMVGPWGGAFISIGLFISIMGAWLSWTMLPAETMRLMAEQGLLPKRFAKENQHGVPTLALMTTACMVQAFMIMLIFAEKAYEFAYSLCTAAIVVCYIIVAAYQIKYSWQNRATKGNILQLWVGIFTLVFEVVAITLAGLQYLFVCLVVYIPGIILYMYTKKQNENRLLTKHEWSATILICSGAVITVTMLVMGQIHL
>NZ_CP014924.1|WP_065902193.1|1621703_1623086_+|group-II-intron-reverse-transcriptase/maturase
MQQPQNTEKADRRRTVGLEAQEQVGVRSTDSGENTMMNGTKFQELVLDRNNLNEAYLRVCRNKGAAGLDGMTVDELLPYLRKHKQELLQALQNETYRPRPVKRVEIPKPNGGKRKLGIPTVIDRLVQQAMAQVMVPTFERVFSDNSFGFRPNRSAKDAIDRVVQFYNQGYHYVVDLDLKAYFDTVNHDLLIKFIEQYITDPWILHLIRRFLTSGVMNGGLFERSDKGTPQGGPLSPLLANIYLNELDKLLTSRGHKFVRYADDCNIYVRSKRAGKRVLTNVTRFLEGDLKVTVNEDKTSVSSPLRAKFLGFSLGVGRGGAYARPAWQAKQRIKSALRKMTKRNRGVSLNLVFNEIHQKMRGWLQYYSVGKMTNFIRHLDEWLRARIRQYIWKQWKKLKTKVNHLVKLGLSGTSAYTMANTRKGYWRTAHSKTLTYTLTNKRLERLGLINMSKTLQSIQSA
>NZ_CP014924.1|WP_056987212.1|1620230_1621226_+|N-acetylmuramoyl-L-alanine-amidase
MQTNEVSAAVSNYTQANRPDDVPVTHIVIHSTELSYLDTVRRFQEDHEVSAHDVIRGADGLVTRMVAPENVAWHAGNWELNCRSVGIEQEAYVGEPESFTETMLRSLATVVAQLSQTFHVPLDRDHLLGHDNLCAATPDGQLAMHQDPGRYFDWQGLMKGLWAPVISLGTPQIGEPVVVCVNVADLYQSPDTGAELLTSESLPAWTHQLSYGQRYVCAERSGEWVAIWYNGVKGWCHDPEHTILQGCQGEVIAPNSPHTPIFGMTSAAAKPIATLAAEEQYVAGPLVSQLESRDTNGQFQASFTGQRYYQFYYNHRIAFVPIDTMHLVKKE
>NZ_CP014924.1|WP_065937579.1|1633920_1635279_-|adenylosuccinate-lyase
MTSSVIDSALFKDQYGTKAMRDVFSDETQIQKWLDAWAALAQAEATQGIVPQKDADEIKAKAVFKNINTDEVREGFKKTAHPLMPQIKSFTKSLSPEAGGYVHWGATTQDITDTGLVLQLKDAQAIIVSQVEDLLRDCLKQADKYKNLVMAGRTHAQHAVPITLGYKIAIWANEFGRHLERLEQAKHRYLVGELAGAAGTLASLGDKGLAVQAKYCELLGLETPLITWHVSRDGFAEFSDILSMIAGTVAKIANEIINLQRTEIEEVEEGFTMGKIGSSTMPQKRNPMICENIVATTRLVQASAPLGTTAMVQEHERDMSFWQTDWAYLPQICINLSGAMAMLHTVLNQMIVHEDNIKRNLAMTKGMIVSERVMLDLGHYLGRQVAHEVIYENCMKAFEEDKPLLDLLLQDARVTDDVDEATLRELLDPENYSGSSAKMVDQILGRYSEYLD
>NZ_CP014924.1|WP_083215504.1|1637107_1637497_+|LysR-family-transcriptional-regulator
MNTKDLAYFCQLVDQKNYTATAKYFGVSQPTITMAIKRLEKEYGGISLITQPYPRASLTVTRAGQVLYEQAQDVLGQLQTTRTEVVHAAEDSIRLGLSPVTGVTWFPKVANKLLKTNLLADLVVHEAGS
>NZ_CP014924.1|WP_083215505.1|1637531_1637999_+|hypothetical-protein
MWPYWQRSAPLKSQDLNAMLLAIHPFKIIVSAHHRLAQQEAVAFSDLRDDPFVTMTNHYIHAQALEAYSSAGQFRPNVVYRTSDLSMVKALVRQNVGVSLLVETAVNQGDAGITALALTDVPPTLSYMYLVTRHSFHPTKRQAFFIQLFRDQAQS
>NZ_CP014924.1|WP_065937698.1|1638281_1638728_-|MerR-family-transcriptional-regulator
MLDPAFREQLHFVSKNVQWYLGIGDVAEATGVSQSQLRYWEQKGYIESKKEHSQNRKYTYGMLIKVFVIKYYMDQGFTLAAAAKKAAAHKEATELLKHFILDRFEGVKTVDGFPAIDLGYLDSAQSERLLAVVKGDHTDFKIIPTSEA
>NZ_CP014924.1|WP_065937699.1|1639131_1640589_+|multidrug-efflux-MFS-transporter
MNGKPYSRTLMILVLLVGTFCTVLNQTILSTANPTIMKAFDVNLSTVQWLTTGFMLVNGIMIPISAWLSTRFNSKWLYISAMTVFTIGTAVCYTAPNFGSLLTGRLIQALAVGIIMPLLQILMLSIFPPERRGTAMGLAGIVIGLAPAIGPTLSGWVIDAFTWRDLFGMILPILIIVLVLSFFFMKSVLPTTKKGLDWLSVALSTIGFGSLLYGFSSVSDDGWGSVKVISFLIGGVIFIGLFAWRELTMKNPLLELRVYRSIPFTISAVLSSVSMMAMVGAEMIIPIYLQNVRGMSAFHSGLTLLLGALMMAVMSPITGRAVDRYGARRLSIMGMVLLTLGTLPFVFLTKDTPTIYIVVLYAVRMFGIAMAMMPATTVGMNALPVNLIGHGTAVNNTQRQVASSIGTAILTSVLSTVVKNHVPGKHMIKTNPLHYKDLAINATLTGYHAAFWVALGFCLLAVVTAFLMKNRGHASDYPTDGGDAK
>NZ_CP014924.1|WP_054711141.1|1640585_1641317_+|DUF4811-domain-containing-protein
MIIFILAICVVLAYICFIYIQSKSLSAILAIVFLAGAVVSGTFIVKNWHDHYGLKEVTTTSAAKTIYPASSKDGMNTMLYSPIGTENKHQVYVYKKTADAKKTSHTQVGSTTKNEVIRTSGKSRIVTKTTRYAYKNNADKIWFAFTDQSGQYVRRVNKIYINKNWIVLSAAQATALKKEMSSKSFQANLKTQAKTYVAAQVKAAMTKDPTMGKAALAKVEKQAAAEFQQQAVAKVIKQVKAKY
>NZ_CP014924.1|WP_054711140.1|1642449_1643442_+|ketopantoate-reductase-family-protein
MTKYTVIGAGAMGLGYGVLMQERTANTVDFVDTWKPSVETIKEQGGVWVSRDHKDKHMVPVNISYPEDYTGDPDVWIIFVKQMQLADVLKRCAPLFKAHQYVFSAMNGMGHIDKISNYFPDEHIVGGTAMIATVLNGPGDVDFMGAARAGEMHMVNKTEHNDETTQQIFTDFKDAGMGPIMTENFMGTLMSKVVFNAVTNTLCSMFEITMGQFIEYPGVKDMTIQLMNESFDACERAGIHLVETRQEEVASVDYVSRVANPYHYPSMYQDFSKGRPTEVDYINGYIAKIGREHDYVCRTHEFITHEVHMAELMRKYKKQPAEQTQPVSQA
>NZ_CP014924.1|WP_065928428.1|1643656_1644757_+|ABC-transporter-ATP-binding-protein
MAIELHDVTKTYEAGQQPVLSKVNMTVNDGEFFVIVGPSGCGKSTLLRMIAGLISISSGKLMINQQVANDIPPKDRKLSMVFQSYALFPFMSVYDNVAFGLKSRKLAPQEIQKRVNDALVMVDLKALATRKPRSLSGGQRQRVTLARAIASDAQFCLMDEPLSNLDAQLRAKMRLELKALQRQLGITVIYVTHDQVEAMTMADRVLVLQDHQVQQIDTPINIYEHPKNEFVATFFGTPQINLLSADYAHRELTVNKSFRLPIAYPLAAGQYTIGIRPSDVTVAVNDRQANARVSAVSYLGDQTVIVAELLESADELRLVVSNQADVKNGDFISLQRVNHFFVFDQHGALITAESREEVATHAATLV
>NZ_CP014924.1|WP_054711136.1|1644737_1645673_+|sugar-ABC-transporter-permease
MLQRLSKPVDHTSVPSVELTSQRSIKDSGYAVLFIGPTIVLLLIFVFFPMLKTAYMSFFLTNDYGQATAFVGLSNYLSLLTSPAYLSSLGATLIFVAAVSVLTVVLGVALAVAANQQLKGIRLFRTLFSGTMGGSISVAAIFWLFAFNPSVGVFAQLSQALHLPVVNWLTDPKSAMVAIILSTVWMNLGFTFLIIFGALQSVPQSLYEAADIAGASKMTQLFKVTIPMISGTLFFVTIVTLIEAFKGFGLIDMMTEGGPDNATNLLVYRIYADSFLNGNFAQGSTESILLTVIIAIFTLIQFKFFGKRVHY
>NZ_CP014924.1|WP_054711134.1|1645672_1646521_+|carbohydrate-ABC-transporter-permease
MQLTPSEQPQTTSIQRLKLIGRYTLLIILMLIVVSPFLLGFWTSLLPTAQISKGALWGRLSIDNYIAAFTTTPILRYLFNSIVIASLTTIAQVIFCSMSAYAFVFLRFKGRQFLFYAFLATMMLPFEAEVIPNFMTVKAMGLLNHFAVMVVPFMATAFGTFMLRQSFLQLPKELKEAADIEGLNHWQFYYQVVLPYSRISIVTLAAYSFLTSWNQYLWPMLTTFSDTFRPVQDGLRQLQSAETFNNWGMIQASACIVVIPTLIVLFIGQHYFKSGLNEGSVK

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Crispr_ID: NZ_CP014924_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_9

1724429-1724566

Orphan

Consensus_repeat	Method
CAGAGTTGGCTTACATGCAGCTTTCTGTTTTCCGAAACGCGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_9

>merge|NZ_CP014924|9|1724429-1724566|CRISPRCasFinder
CAGAGTTGGCTTACATGCAGCTTTCTGTTTTCCGAAACGCGTTTCGACTCGAGGACAGAGAACCACAAGAAATGCCCGAACCTGGCATTTTTGCCAGAGTTGGCTTACGTGCAGCTTTCTGTTTTCCGAAACGCGTTT

>NZ_CP014924|9|9|1724429-1724566|CRISPRCasFinder
CAGAGTTGGCTTACATGCAGCTTTCTGTTTTCCGAAACGCGTTT	CGACTCGAGGACAGAGAACCACAAGAAATGCCCGAACCTGGCATTTTTGC
CAGAGTTGGCTTACGTGCAGCTTTCTGTTTTCCGAAACGCGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_056987535.1\|1727774_1728311_-\|phenolic-acid-decarboxylase	unknown	unknown	gnl\|CDD\|226010
NZ_CP014924.1\|WP_065902213.1\|1718522_1720235_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP014924.1\|WP_065900954.1\|1728910_1730293_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014924.1\|WP_065902227.1\|1734622_1735279_+\|DUF1684-domain-containing-protein	unknown	unknown	gnl\|CDD\|225894
NZ_CP014924.1\|WP_065902222.1\|1732144_1733056_+\|DUF1684-domain-containing-protein	unknown	unknown	gnl\|CDD\|377941
NZ_CP014924.1\|WP_054709634.1\|1723844_1724252_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_054709611.1\|1713274_1713652_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_065902220.1\|1730914_1732000_+\|glutathione-S-transferase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP014924.1\|WP_083215509.1\|1721099_1722056_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|283645
NZ_CP014924.1\|WP_065902211.1\|1714211_1715594_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014924.1\|WP_054711212.1\|1725663_1726449_+\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
NZ_CP014924.1\|WP_054711214.1\|1726603_1727080_+\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|179399
NZ_CP014924.1\|WP_156773221.1\|1711956_1712388_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_056987534.1\|1727172_1727715_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP014924.1\|WP_056987532.1\|1716384_1718007_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173869
NZ_CP014924.1\|WP_065902215.1\|1720337_1720889_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP014924.1\|WP_054711210.1\|1724886_1725531_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP014924.1\|WP_065902216.1\|1722242_1723445_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP014924.1\|WP_056987536.1\|1733108_1733669_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP014924.1\|WP_054709614.1\|1715681_1716161_-\|C39-family-peptidase	unknown	unknown	gnl\|CDD\|227323

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_083215509.1\|1721099_1722056_-\|alpha/beta-hydrolase	gnl\|CDD\|283645	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915). This family consists of several bacterial proteins of unknown function. Members of this family have an alpha/beta hydrolase fold.	3.17853e-55
NZ_CP014924.1\|WP_065902213.1\|1718522_1720235_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.78831e-53
NZ_CP014924.1\|WP_065900954.1\|1728910_1730293_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	7.02444e-172
NZ_CP014924.1\|WP_065902227.1\|1734622_1735279_+\|DUF1684-domain-containing-protein	gnl\|CDD\|225894	COG3358, COG3358, Uncharacterized conserved protein [Function unknown].	3.44312e-15
NZ_CP014924.1\|WP_065902222.1\|1732144_1733056_+\|DUF1684-domain-containing-protein	gnl\|CDD\|377941	pfam07920, DUF1684, Protein of unknown function (DUF1684). The sequences featured in this family are found in hypothetical archaeal and bacterial proteins of unknown function. The region in question is approximately 200 amino acids long.	1.25498e-37
NZ_CP014924.1\|WP_065902220.1\|1730914_1732000_+\|glutathione-S-transferase-C-terminal-domain-containing-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	2.88984e-89
NZ_CP014924.1\|WP_054711212.1\|1725663_1726449_+\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.35423e-137
NZ_CP014924.1\|WP_065902211.1\|1714211_1715594_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	1.62902e-172
NZ_CP014924.1\|WP_065902216.1\|1722242_1723445_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP014924.1\|WP_054711214.1\|1726603_1727080_+\|S-ribosylhomocysteine-lyase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	1.98006e-95
NZ_CP014924.1\|WP_056987535.1\|1727774_1728311_-\|phenolic-acid-decarboxylase	gnl\|CDD\|226010	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	9.66768e-103
NZ_CP014924.1\|WP_056987532.1\|1716384_1718007_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP014924.1\|WP_065902215.1\|1720337_1720889_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	0.00427006
NZ_CP014924.1\|WP_054711210.1\|1724886_1725531_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.20258e-46
NZ_CP014924.1\|WP_056987534.1\|1727172_1727715_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.80212e-16
NZ_CP014924.1\|WP_056987536.1\|1733108_1733669_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.57998e-06
NZ_CP014924.1\|WP_054709614.1\|1715681_1716161_-\|C39-family-peptidase	gnl\|CDD\|227323	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown].	2.31556e-37

>NZ_CP014924.1|WP_054709634.1|1723844_1724252_-|hypothetical-protein
MTKKAKIIGIIMSVLTAACLWTVGQAHAVFAAVRLTSAIQKGTTSQSTRRVTVRPTTKLHVVLTAYDNNQVTSTKTFTYKIFRYGKLYKTYHVKNGHVATAVKVKPGKYSVRAYDGNNTVTFTGGISSSNEPHFI
>NZ_CP014924.1|WP_065902216.1|1722242_1723445_-|acetate-kinase
MTKTLAINAGSSTLKWKLFSMPDETVIASGLVDRLNLPGSIFTVKRPGAEKYKKVEDNITYRLAAAMVLSHLKDSGIVKHLHEITGIGHRVVAGGEIFSDSAVITDESLQQIKDLSEYAPLHNPIQAQYIEIFQTLLPDAHQVAVFDTSLYTDMPKVNYMYPIPYQYYKDFGARKYGAHGTSHRYVAERTAEILGKPLADLKLITLHLGSGSSVTAFDHGKVIDTSMGFTPLAGVMMGTRSGDIDASLVTFLTEKLGISIGDMTDILNKKSGLLDVSELSPDQRDLEDAEDKNPKAKLALDMFANRVIRYVGSYVAELNGLDALVFTAGSGENGIGMRERIADQLGVFGVNIDHEKNQVRGRETIISPDDAKVKVLVVPTNEELEIVRDVARLTTPHSKY
>NZ_CP014924.1|WP_083215509.1|1721099_1722056_-|alpha/beta-hydrolase
MSKRLLKLSLGIILAAGILLGFGFKMATNSAKPNSQPSVTHKTQQTKHQSANTVSAKVNVPTLMIHGVGGTFESEMPMVKQAVQKGYAQWGLVVHVKADGQVTTRGSLKNKPNPIILVRFDNNVAGELQDAKWIKNVLTTLKTKYDVTEYNIVGHSMGAYAAVYYEKYYSHEANQPKLDKLVTLAGPFDGIITERKTRWIGRVSDRILKLWDDTPNLNRLTATGKPKIIHPEYQLLLNKRNEFPSSAHVLNMYGNLKNGTNSDGTVTNISSESLAYLIGSRVTSFREKMITGYDASHYGLHNDNAEVRQELYKFLWNK
>NZ_CP014924.1|WP_065902215.1|1720337_1720889_+|TetR/AcrR-family-transcriptional-regulator
MSPKERRDQALVAIFHALIDLMQHQEMTTISVTKLCQKAGVSRTYYYKHFTTYAEIIDQYEMLSIVNYMRGLPNSTKLEMPTMMTHYFELVANHHEEQLVLLETGNEQPLIRGFETAFQYLVQADKIYQGPGSNTTQRYWGGFLAGAVINTSLRWVQNEMTETPAYMGQLIADFLKIESGGKR
>NZ_CP014924.1|WP_065902213.1|1718522_1720235_-|MFS-transporter
MTLKTRLTVMTMAIGIFLCMLDTTIMNIALPAIQSGLHVSLASLSWALNVYTITFAVFTIPLGRLSDQLGRHKVYIAGLALFLIGSLVSGSATSMALLISGRALQSLGAAIVFPASMTIGITTVDLAHRTPVVATLGLTQGLAAALGPTLGGIITQFLGWRWVFFINVPLVILAIGLSLWLLQLKNESRTTAKIDGLGMVLSMILLFSLTLALVQGSDWGWSSLPILSLFAISLVSLVAFIVAERFVKDPMIPLTLFAHRQFAGAVFAIVITGIFLVAVMVIFPTFCTKVQGKTELAAALMITPASVMIFLLAPISGNIIDKIGPRVMVATGFILMILGYATIFVMNPNQYAQVVIALLFIGAGFGLVAGPIVVLGAADFTGDMLTASQSVLGLFRQIGTVLAVAIFVSALTANLKTAKTTAINDTETYVQTLALPQTAKHAMVTNATAQIKSENPSDHHAAGISKATEARLIEENYQTAVKKAGGAQLPTSVKQAIRFKVTHAVQTKVTKDNAVISKASTHIKHTTKQHIVAAFMSPYKLALPFLVLASLTSLLFYRRKDYRRVLADRN
>NZ_CP014924.1|WP_056987532.1|1716384_1718007_+|peptide-ABC-transporter-substrate-binding-protein
MSLRQKWAALAGVAGLALVLGACSSNSSSSKKTFTMPTDSELSTIDLSKSTALGTFDTLNNTNEGLYRLGKNSKPETGLATKMTQSKDGKRYIIDMRHNTKWSNGDTVTAQDFVYSWKRTVNPKTASQYSYLFSGIKNADAIADGKKSANTLGIKALGKYKLQIDLEQQIPYFKLLLGFPVFYPQNEKVVNKYGSAYGTRSDKMVYNGPYKLTKWNGTSTTWTLKKNNDYWDKKAVKMSSIKYQVVKDNQTALNQYNSKKLIGAPLTGNQAKNLKNNKDLISRPQSSSYYLAMNQKMKLFKNLKIREAISMAINRKQITNKVLGDGSFVNGSFVSKGLATNPKTGKDFTSDITTPESMTYNPTKAKQLWKEGLKETGITNPHFTILSADSDAGKKVTEYLQSGLEETLPGLKVSVSNIPQRSELAKQANHDYEVTFANWFADFADPITFLNIMTKNNPSNISGWSNSEYDSLINASSTTDANNASKRWDDMVKAQNIMMKDQGITPLYQSAAPWLLSSSVKDMVYNSAGASYNFKTTYLK
>NZ_CP014924.1|WP_054709614.1|1715681_1716161_-|C39-family-peptidase
MHLNVPLIPQRPELPTGCEITAVTMMLQYAGADVSKVQLAHEMPYAKEDCNLGFVGDPFTDNGNSIYPPALLALVTKYAGHATNLTGATLAELHQQLDANKPVVIWVGEFDGFHTHALVLVGYDAATVTVNDCWTNTVTMLDNAQFAEIRANKAMALGL
>NZ_CP014924.1|WP_065902211.1|1714211_1715594_+|group-II-intron-reverse-transcriptase/maturase
MQQPQNTEKADRRRTVGLEAQEQVGVRSTDSGENTMMNGTKFQELVLDRNNLNEAYLRVCRNKGAAGLDGMTVDELLPYLRKHKQELLQALQNETYRPRPVKRVEIPKPNGGKRKLGIPTVIDRLVQQAMAQVMVPTFERVFSDNSFGFRPNRSAKDAIDRVVQFYNQGYHYVVDLDLKAYFDTVNHDLLIKFIEQYITDPWILHLIRRFLTSGVMNGGLFERSDKGTPQGGPLSPLLANIYLNELDKLLTSRGHKFVRYADDCNIYVRSKRAGERVLTNVTRFLEGDLKVTVNEDKTSVSSPLRAKFLGFSLGVGRGGVYARPAWQAKQRIKSALRKMTKRNRGVSLNLVFNEIHQKMRGWLQYYSVGKMTNFIRHLDEWLRARIRQYIWKQWKKLKTKVNHLVKLGLSGTSAYTMANTRKGYWRTAHSKTLTYTLTNKRLERLGLINMSKTLQSIQSA
>NZ_CP014924.1|WP_054709611.1|1713274_1713652_+|hypothetical-protein
MMTQPELASDEIISRLHLPTLRNLLNDLSLDYDQLESNVASQADLHKKGNNPPSYTNVRSLGEVIEDAYDGYVQTLYQDGTTDSDETKVVTAFRQQLNQDLNQFVLVKNTGRAYLADETAGKLSV
>NZ_CP014924.1|WP_156773221.1|1711956_1712388_+|hypothetical-protein
MKNSFSKTMRTLYVTYHTISNGKVGKTNYKLSIYKKTSSTYSAKLTKYKSGRAVNIKGTTYTFTKTKSSPAKSYVNTYTKPIFQKSLQDQYEAAVQKQYQDYLAKGENVEDPSEDTDLQSQITDKVNSGTTTAINQLVDSFNS
>NZ_CP014924.1|WP_054711210.1|1724886_1725531_-|histidine-phosphatase-family-protein
MDNTFTVYLVRHGSTLLNSYNRMQGWIDSDLTEEGIQQAQQAADKLNDIAFDRAFSSDLGRAVNTRNLITNQLQSTLKEAANLPEFREVNFGFFEGLNSDDIWAGIAAPYGKSSQKDLMDIGGQEEVRKAMNEADPSHVAETYDQVIDRLKAGFQQLRDHCEPGENVLVVSHGTLIRTMADYLGVDTTDNYPINGGVSQLTIDEEQVVFESYNE
>NZ_CP014924.1|WP_054711212.1|1725663_1726449_+|carbon-nitrogen-family-hydrolase
MKLTFSLAQIDIAFGQPAKNFAKIEQFVKQAADQEADMVVFPEMWNTGYDLIRLNDIADPNGDQTKHVLAALARKYNIMIHGGSVSTKRDGKFYNSTYIFDQEGHQIADYDKVHLFGLMAEDEYLAAGDHKDRFEIKGIAATSVICYDIRFPEWLRTQSLTDSRIIFVPAEWPTPRLEQWRKLLAARAIENQSFVIGVNRVGSDPDNRFGGSSVVYDPLGKEVLRLNDREQLATITIETGQTDKVRGSMPVFADRRPDLYE
>NZ_CP014924.1|WP_054711214.1|1726603_1727080_+|S-ribosylhomocysteine-lyase
MAKVESFELDHTKVKAPYVRLIKVEKGPSGDEISNFDLRLVQPNQNAIPTAGLHTIEHLLAGLLRDRMDGVIDCSPFGCRTGFHLITWGTPSTTEVAKALKSSLEQIANDIKWEDVPGTTIESCGNYKDHSLFSAKEWSKLIVSQGISDDPFVRNVVD
>NZ_CP014924.1|WP_056987534.1|1727172_1727715_-|PadR-family-transcriptional-regulator
MPKKRTLPYVLLGLINDKQHLSGYQMVQEFKHEISDFWTASHSQIYPELQRMTDDGWITTVTPDTQPDANRNQTYYALTSTGHDVLLDWLREPLTQKDTDLFALKLFFIKTSDSPLLKPLLAQQLTLSQNRVTYLKSRKETVFQSQTDIDSHYGHFLTLSRGIERESNYVLWLQHLLETL
>NZ_CP014924.1|WP_056987535.1|1727774_1728311_-|phenolic-acid-decarboxylase
MTKTFKTLEDFLGTHFIYTYDNGWEYEWYAKNDHTVDYRIHGGMVAGRWVKDQEANIVMLTEGIYKVAWTEPTRTDVALDFVPNEKKLNGTIFFPKWVQEHPEITVTFQNDHIDLMEESREKYATYPKLVVPEFATITYMGDAGQNNDDVIAEAPYDGITDDIREGRYFDANYKRLNK
>NZ_CP014924.1|WP_065900954.1|1728910_1730293_+|group-II-intron-reverse-transcriptase/maturase
MQQPQNTEKADRRRTVGLEAQEQVGVRSTDSGENTMMNGTKFQELVLDRNNLNEAYLRVCRNKGAAGLDGMTVDELLPYLRKHKQELLQALQNETYRPRPVKRVEIPKPNGGKRKLGIPTVIDRLVQQAMAQVMVPTFERVFSDNSFGFRPNRSAKDAIDRVVQFYNQGYHYVVDLDLKAYFDTVNHDLLIKFIEQYITDPWILHLIRRFLTSGVMNGGLFERSDKGTPQGGPLSPLLANIYLNELDKLLTSRGHKFVRYADDCNIYVRSKRAGERVLTNVTRFLEGDLKVTVNEDKTSVSSPLRAKFLGFSLGVGRGGAYARPAWQAKQRIKSALRKMTKRNRGVSLNLVFNEIHQKMRGWLQYYSVGKMTNFIRHLDEWLRARIRQYIWKQWKKLKTKVNHLVKLGLSGTSAYTMANTRKGYWRTAHSKTLTYTLTNKRLERLGLINMSKTLQSIQSA
>NZ_CP014924.1|WP_065902220.1|1730914_1732000_+|glutathione-S-transferase-C-terminal-domain-containing-protein
MAKEAALQEELSKIDVNEKLSACPIDFSRSKVANPRAGQKSKDYVSGETKSNFNDRKKFQPYQEPQFNQLFTDGTLPVEANRYRLIWSRHCPWANRLAIAIDLLGLDNVISKGVVDPLRPAGVVGDWFFTLDDDDEDPVLHTKSLSESYLKADPNYTLRTTVPALVDVKTGKVVNNNYNTLIDEFSIAWQRYQDEDVPDLYPEELREDIDALNKIIYTDVNTAVNEAGLARSQVDYEKYYNRVFNRLDWLEERLSKQRYLFGSTITDTDIRLYVTLARFDVVFYQKYYVNKKRLVDYPNLWNYTKDLYSLPAFKNNTDFDAIKKRFYQVDHTPQFDLPRIIPNGPDLSIWTAPNDRNRFEA
>NZ_CP014924.1|WP_065902222.1|1732144_1733056_+|DUF1684-domain-containing-protein
MSNLQRLTKLNKQDYEQQWEDWHKKREDAVKTPYGWLSLRSIDWLEDGKRIAIDGFPGLWGQNGNAVTYYPEVGKTVTNRDKIISEPKIIVVDNVEDVNVEDFYYEGVRAQLIKRIGSTKKFAVRQRDPESKFRRNFNGFPHFDPDENWVLPARYEPLDNWSNITTKAVTVGLSHNETQIGNLYFKYHDKDYRFVVFQGHNDDSGWLKKDPETGETHYLNNRQNTEGIGFILFKDQSTGKQTYGGGRVLSIDISNPAKVNSVDLNTAFNLPCAYSYFCTCPFAPEENILPFAVTSGEKTPHIY
>NZ_CP014924.1|WP_056987536.1|1733108_1733669_+|GNAT-family-N-acetyltransferase
MQFKKIENADVAEKLTSLLHQAYAADVRLGIHFAASSVTVENVRKHIESTPTFILEDDDGTIVATTSVRLPWSDNPSPFGLPHLGWVATNPDYQQQGFSKQIISWVVTNYVKPELYTPAVTIGTAADHPWLLSFYKSLGFKVIDITQKPNAPRAAYLISIFDEHRTRLIDDAYLQKTLSKQGLSTY
>NZ_CP014924.1|WP_065902227.1|1734622_1735279_+|DUF1684-domain-containing-protein
MTDYQGLTTLSKKEYLQHWKEWHSKREDALKAPYGWLSLRSIDWLEDGKTIKLAGFPGSWAQDDNTVTYYPEADKEVTNRGEVLTKPKVIVVENVEDVNVEDFYFEDVRAQLIKRLGSTKKFAVRQRDPNSKFRHDFAGLKHFDPDENWVFPAKYVPLTEWKDVKTAAVLSELSHNETQIGDLIFEYDGHEYDFVVFQGHNDDSGLTVKDPKTGKHTI

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Crispr_ID: NZ_CP014924_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_10

1801129-1801219

Orphan

I-C,I-E,II-B

Consensus_repeat	Method
GTGTTCCCCGCATGTGCGGGGGTGATCCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_10

>merge|NZ_CP014924|10|1801129-1801219|CRISPRCasFinder
GTGTTCCCCGCATGTGCGGGGGTGATCCCAATGTGGTGGGATCATCGTTCGTCAACCTCAAGTGTTCCCCGCATGTGCGGGGGTGATCCCA

>NZ_CP014924|10|10|1801129-1801219|CRISPRCasFinder
GTGTTCCCCGCATGTGCGGGGGTGATCCCA	ATGTGGTGGGATCATCGTTCGTCAACCTCAA
GTGTTCCCCGCATGTGCGGGGGTGATCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_065902271.1\|1801637_1802642_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380204
NZ_CP014924.1\|WP_065902278.1\|1807195_1807444_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_054712910.1\|1791256_1792453_-\|3-phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240651
NZ_CP014924.1\|WP_054712913.1\|1790505_1791129_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP014924.1\|WP_156770467.1\|1799740_1801027_+\|purine/pyrimidine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP014924.1\|WP_065902285.1\|1809933_1811712_+\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
NZ_CP014924.1\|WP_083215513.1\|1811815_1813543_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP014924.1\|WP_065902273.1\|1802763_1803066_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_156319416.1\|1790296_1790446_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_065902289.1\|1813637_1816532_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP014924.1\|WP_065902269.1\|1799313_1799646_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|224364
NZ_CP014924.1\|WP_054712467.1\|1787908_1788328_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_065902276.1\|1805889_1806630_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293807
NZ_CP014924.1\|WP_065902262.1\|1798018_1799140_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176239
NZ_CP014924.1\|WP_065900954.1\|1793743_1795126_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014924.1\|WP_065902280.1\|1807727_1809428_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP014924.1\|WP_065900857.1\|1788573_1789878_+\|IS1380-family-transposase	unknown	unknown	gnl\|CDD\|379340
NZ_CP014924.1\|WP_065902260.1\|1792532_1793162_+\|chloramphenicol-acetyltransferase	unknown	unknown	gnl\|CDD\|132351
NZ_CP014924.1\|WP_065902283.1\|1809592_1809916_+\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212144
NZ_CP014924.1\|WP_083215512.1\|1804955_1805861_+\|ethanolamine-utilization-protein-EutJ	unknown	unknown	gnl\|CDD\|237904

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_065902271.1\|1801637_1802642_-\|hypothetical-protein	gnl\|CDD\|380204	NF033202, GW_glycos_SH3, GW domain-containing glycosaminoglycan-binding protein. The GW domain of Listeria belongs to the clan of SH3-like domains. A similar but broader model (pfam13457) occurs in Pfam. The GW domain occurs as repeats on surface proteins of the cell-invading pathogenic bacterium Listeria monocytogenes, and is involved in binding to glycosaminoglycans. Members of this family include the GW-type internalin InlB and several paralogs.	0.00387085
NZ_CP014924.1\|WP_054712910.1\|1791256_1792453_-\|3-phosphoglycerate-dehydrogenase	gnl\|CDD\|240651	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	5.60503e-97
NZ_CP014924.1\|WP_054712913.1\|1790505_1791129_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	4.24031e-46
NZ_CP014924.1\|WP_156770467.1\|1799740_1801027_+\|purine/pyrimidine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	8.24362e-165
NZ_CP014924.1\|WP_065902285.1\|1809933_1811712_+\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	1.21995e-107
NZ_CP014924.1\|WP_083215513.1\|1811815_1813543_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	5.25926e-08
NZ_CP014924.1\|WP_065902280.1\|1807727_1809428_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	1.61165e-26
NZ_CP014924.1\|WP_065902289.1\|1813637_1816532_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.21061e-75
NZ_CP014924.1\|WP_065902269.1\|1799313_1799646_+\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|224364	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism].	4.34931e-26
NZ_CP014924.1\|WP_065902276.1\|1805889_1806630_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	8.85124e-46
NZ_CP014924.1\|WP_065902262.1\|1798018_1799140_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176239	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NZ_CP014924.1\|WP_083215512.1\|1804955_1805861_+\|ethanolamine-utilization-protein-EutJ	gnl\|CDD\|237904	PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional.	6.5669e-124
NZ_CP014924.1\|WP_065900857.1\|1788573_1789878_+\|IS1380-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	5.26877e-166
NZ_CP014924.1\|WP_065902260.1\|1792532_1793162_+\|chloramphenicol-acetyltransferase	gnl\|CDD\|132351	TIGR03308, phn_thr-fam, phosphonate metabolism protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.	1.64347e-79
NZ_CP014924.1\|WP_065902283.1\|1809592_1809916_+\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212144	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs. RS21-C6 proteins, highly expressed in all vertebrate genomes and green plants, act as house-cleaning enzymes, removing 5-methyl dCTP (m5dCTP) in order to prevent gene silencing. They show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, RS21-C6 contains a single MazG-like domain and functions as a tetramer (a dimer of dimers) with a typical four-helical bundle. Divalent ions, such as Mg2+, are required for its pyrophosphatase activity. This family also includes a pyrophosphatase from Archaeoglobus fulgidus (Af1178). Although its biological role remains unclear, Af1178 shows significant sequence similarity to the mouse RS21-C6 protein.	9.79164e-23
NZ_CP014924.1\|WP_065900954.1\|1793743_1795126_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	7.02444e-172

>NZ_CP014924.1|WP_156770467.1|1799740_1801027_+|purine/pyrimidine-permease
MENAQNDRSVVKNLILGFQHLLAMYSGDILVPLLIGGALHFTAAQMTYLVSMDIFMCGIATLLQLKRTPITGIGLPVVLGCAVEYVAPLQSIGKHFGLAYMYGGIISAGIFIFLIAGIFADLRRFFPPVVTGSLITLIGFTLIPVAFQNLGGGDNTAKSFGSPTNLILGFTTALIIIVINIWGRGFLKQISVLIGILVGTLLAIGMGKIGFAPVSAAHWFQLPQLFYFGVPKFEWSSIATMILAAITCMIESTGVYYALADILGRDLDNADLKHGYRSEGIAAIFGGIFNTFPYSTFSQNVGIVQLSGIKKLRPVYYSAFLLLLLGLIPKFGAIATLIPSSVLGGAMLVMFGMVGAQGIKMLMKVELNNKNMLIIAISIGLGLGVTTQPTLFQFLPAEVQTILSNGMVVGSFTAVILNLLLNKYLPEK
>NZ_CP014924.1|WP_065902269.1|1799313_1799646_+|PTS-lactose/cellobiose-transporter-subunit-IIA
MTADEEQQIVMQLILKSGKAQSQAMAAITAAKAGQMQVAADDMTEAEQQLAAGHQAQTDLLAEASGEDLAPSLLMVHAQDHLSMAMMAIELGKEIIDVYKRLNNPNNETK
>NZ_CP014924.1|WP_065902262.1|1798018_1799140_+|NAD(P)-dependent-alcohol-dehydrogenase
MKIKAAVVDQQNADFEIRDDVELAEMGPDDVQVHMVASGICHSDEALRVGDAVIDYPIVLGHEGAGIVEKVGPEVTQVKPGDSVVLGFYACGNCKSCLSGVPTQCENYAANNLSGVRPDGSAHFTENGKKLADMFDQSSFTSTTVVRERNVVKVDKELDLRKLGPLGCGYVTGSGTVLNTLKPKPGDTIAVFGTGAVGLAAMMAGRISGCTKVIGIDIVDSRLELAKELGATDTINSKNEDVVESVKKLTGGYGVNWAVDTTGVTKVMQDSIQVLAQGGTTATIAVTPNHIDLDTWNDLCVDDRKIVGVNMGDSIPQVDIPRLIEFYKLGMFDFDKTEKFYKFSEINEANADSRSGKTIKPVLIIDDDYKPGD
>NZ_CP014924.1|WP_065900954.1|1793743_1795126_+|group-II-intron-reverse-transcriptase/maturase
MQQPQNTEKADRRRTVGLEAQEQVGVRSTDSGENTMMNGTKFQELVLDRNNLNEAYLRVCRNKGAAGLDGMTVDELLPYLRKHKQELLQALQNETYRPRPVKRVEIPKPNGGKRKLGIPTVIDRLVQQAMAQVMVPTFERVFSDNSFGFRPNRSAKDAIDRVVQFYNQGYHYVVDLDLKAYFDTVNHDLLIKFIEQYITDPWILHLIRRFLTSGVMNGGLFERSDKGTPQGGPLSPLLANIYLNELDKLLTSRGHKFVRYADDCNIYVRSKRAGERVLTNVTRFLEGDLKVTVNEDKTSVSSPLRAKFLGFSLGVGRGGAYARPAWQAKQRIKSALRKMTKRNRGVSLNLVFNEIHQKMRGWLQYYSVGKMTNFIRHLDEWLRARIRQYIWKQWKKLKTKVNHLVKLGLSGTSAYTMANTRKGYWRTAHSKTLTYTLTNKRLERLGLINMSKTLQSIQSA
>NZ_CP014924.1|WP_065902260.1|1792532_1793162_+|chloramphenicol-acetyltransferase
MHINFVKLSKDEPVIGKGGEHKDITFGQYVEIGEQNYLDNSAIGDYTYTGQFCFIQNSTLNKFISMAAMIRIGPTNHPYDRPAQHIFAYNGAAYGFDNPDTEFLAGRKIRKTEIGNDVWIGHGAVIQSGVHVGDGAVIGSGAVVTKDVAPYTIVGGVPAKPIKDRFPDELKADLEEIKWWDWSREDLEKYYDDFRLPIDEFVAKHLKRN
>NZ_CP014924.1|WP_054712910.1|1791256_1792453_-|3-phosphoglycerate-dehydrogenase
MFQVKALDTFDVTDFAGDTFRLTESDTPDAVLVRSTKVPDELISEHLLLVARSGIGTNTINVDACTENGTAVFNTPGANANAVKELIIQCLFYSGRPLFSALAATRKLVADDLQAAAEGIRKSYVGEELYGKTVGILGLGAIGQRLANTCYHLGMQVLGYNRSFKNLQHVQQMEDINDVLEQADFVVLLLPLNDETEHMMGKAQFRLMKDTAFLLNFGRAALVDDDAVKEALHQRQFAHYITDFPQNDLKDEPQITMLPHLGGNTVEALSNSANLTLQNTLDFLEAGTIRSSVNFPPVDLPFTSPYRFTLFFKTRNNFWSDVSDVLNHFELPMQEMMGNTRGDYGYTVVNTTIPEMNQDQDQVETILSALSNVPGMIRVRLLANPSDFIETPIPPESI
>NZ_CP014924.1|WP_054712913.1|1790505_1791129_-|DedA-family-protein
MDTTTIMTLIDQYGYLAVLLLIALENIFPPIPSEIILTFTGFLILSTHLTIPGAILASTAGSVLGAIILYGIGRLLTEDRLNYFLATRVGKLLRLKPKDVNKAFTFFNHHGGKAIFFGRFIPVVRSLISVPAGMAEYPLVRFTVLSTLGTAIWNTVLISAGYLAGDNWQTILATIESFSSAITVIVIAACCLAGYYYLRKRRANATK
>NZ_CP014924.1|WP_156319416.1|1790296_1790446_+|hypothetical-protein
MESQQDIYDQIIREIDRENAEYHKKLVRHAYLSLDEMIAEMKKENQNEK
>NZ_CP014924.1|WP_065900857.1|1788573_1789878_+|IS1380-family-transposase
MKTLQEMALNFNKNILVSHTGGQLSSDGGLTLCVELMAKFQFTILADKLLRFNDQRRYCQHSNSSILKQLILQIIAGYSADSAATSLEKEPLFKLLLDKPSLASQATISRFWQRFDKDSVSTLQTLNEALIDRVRLLTNQTATIIDIDSTHSDTYGKQEATNYNAHYGTEGYHPLLATDQDGNLLKAVLRPGNAYTSKDVKAFLTPLLKHYQTQLPTTDILVRGDSGFATPEVYDVCEANDVFYIIRLKCNRKLQNLAEKFVKISDQTQWQEEETHYYSEIYQSASWPKPRQIYIKSTRVAGELIFSHEFIVTNLTNLTAETAFELYHKRSQMENYIKEAKTGFFFDKTDSSTFNANAARMMVSVLAYNIVNFLKQLALTKHDSGLCVSTLRIRLFKVAARVVHTGRRIQLRLSSYHVYHRLFYQALQRIQAIE
>NZ_CP014924.1|WP_054712467.1|1787908_1788328_+|hypothetical-protein
MNEVGKIFEASQQITSVFSNVATIMGVILIVIAVIEFKNNRKKVFREGEQLLVQNSINVLKTFNESILPQIEEVKKTYTSNFKLIRKTNENKIDSGQRLEMSPNISKNQQTLEKKMIWLAKNKSGYGHSLTRLNAFQSI
>NZ_CP014924.1|WP_065902271.1|1801637_1802642_-|hypothetical-protein
MIKKVTVGVAFVVASSLFAVRSTVQAKTSSYKVLSNKAVSKQTFIHYKNKKSYVWNYLPKTTKKAHKTHNLWNYKKTNFVVTRKAKVSNMGTYYKIKGSMWTGWISSKDVLNGKVKVTNQQTTVVSSRKPVSDRSSQTSINQTATTQPTASQTPTVQQPTQAQSDTTSSNPYVEEQIKEYGWSGQPIVLDRNATALNDVAIPDAIKGQTFATPNDLRTILYGLEDHYSMLLEQGKTALKPLEDEYKDYERDLSKSSTDSQVITNLKGKQSAGIVLTKEEETTLYDTEKDKEIQDHNVNNMKNDMETLNSLERTLNLYQDNYDQISYAIDKQIWK
>NZ_CP014924.1|WP_065902273.1|1802763_1803066_-|hypothetical-protein
MLKNEIIPYDYDYHNSDYVDEVGEVQAEHDDSMALMKGRTATLTKINFISDIPDGPYEDDNEKLIIARNLISAHEEKILKEWYMGTKKVEILYYLFIGKI
>NZ_CP014924.1|WP_083215512.1|1804955_1805861_+|ethanolamine-utilization-protein-EutJ
MAVKKTKKTAGEVTPQKKAAPAKKKSNLDIANEKLDEFAKVVNTDKAMRKAKKGETFKCGVDLGTSSIVLTVLDQNDNPIYGAFEYDHAVRDGIVVNYMESVNILKRLKAKAEEVLGVELTTACGAIPPQTGEGASKIVQNVIESAEFICNAVVDEPTAAAKFLAMKDGTVVDIGGGTTGISIFKNGKLIDVMDEPTGGFHMTLVLGGAHHIDNDAAELLKRDPKREKEVFGTIKPVVEKMATITKRGPSVPVVEPVIVVGGAINFEDFIPTFAKTLSMPAYKPDFPQFVTPLGIGMYDHE
>NZ_CP014924.1|WP_065902276.1|1805889_1806630_+|MBL-fold-metallo-hydrolase
MSELEPLKVTQLDDDLYQFQLDFVHAFLIHDETDGWILIDAGFPVKPEHPNILARALKQIGLRPCDIDQIISTHSHPDHVGNLDLIEAQSHAPIWMNDVEADVLEKRVPMRPVFTLTGGPSNLDHPRAAVPVSNRITGETQLPFAGGIDFVPTPGHSIGHCSLLWHRHGGVLFTGDLVVNETGQLRMAAGNENYDQERESLIKVGQLQFDPLLVSHGDDILADAADIYRQALPRLVAQAQQAITIQ
>NZ_CP014924.1|WP_065902278.1|1807195_1807444_+|hypothetical-protein
MKTMKKTVLTVVVALGLVGGSVHAILTTTVAHARTTYVWIAPNHGKKYHYTKSCRGLTLAKSYRHVTLKWAKSHHYTKCKLG
>NZ_CP014924.1|WP_065902280.1|1807727_1809428_+|DUF262-domain-containing-protein
MQDFVDIPVPSRFRLGELFKDNNFKVPLYQRNFAWKKEEVDDFWNDLMDIVSGERSSHFFGQIVTFQNENHIQEIIDGQQRLTTSSLFLAVIRDVANELFESNRDHLMNASGDSLRDVMYNVKKYLRGEDNSMSSLMLQEDSEDPDKSLSAFFIQLVHQGHDVAETEPERKLVSAYKMLHQQIISAIKQEKTITDRVNLLKTIFECFTDRFYIVMISAPSQKDAFIIFETLNSRGKDLKASDMIKNHLMYVSGDSMKAANGLWNIISQRLKEDSNRITKFIRTYWAARSKLVTEAKLYRSLSQKIKTENDVKNFLEDLGHLVDLYAVLESPMSPKSNLEYFSNDLLLEKVDILNRLQVKLYYPVMLSMKIADFNEEEMLKVVNKLLSVFIRHRTIIHDGTNTLESGFSNVAEKIYSGELSSVQMINEWMDDNLLRTDDEVRSSFDTLKKDGGLRGAKKWTIVYLLSELYDEDLYEKAFDNDNYQLVHISENQVSSELLDYLGNWTMIEKTLKTEFDKAKSINEQQALLNKSDLTENHDIANLLPSWSDSAVRGRQDRLKKNVTVMW
>NZ_CP014924.1|WP_065902283.1|1809592_1809916_+|nucleotide-pyrophosphohydrolase
MEYKVVIDELIAFRNQKNWQKYHTLPGLARALSVESAEVNQLFLWQDSENDDVILQDGKAAQDLKMELADTLTYAYYMCEKLGVEPNDLVHEKLQTNKKRHWKFDED
>NZ_CP014924.1|WP_065902285.1|1809933_1811712_+|DUF2075-domain-containing-protein
MSEDHIDAPIVKRIGYNAVDLWELSKKPDDHELLFDYPTVYLIYNRDKKGKYDVYVGETNDIKQRTRQHLIEDPKTREDWDELRISEDASMIIIGHNRFNKSLTLDIENKMMLYMSGITDVDRLNNRRENEQNKYFTDDIRDVIFSKIWRELRTVDNDLFPLERIIQDSAIFKASPFHKLTDEQNDAKNLILERVSEALIGNQTGQLILVEGEAGSGKTVLLSTIFYLMTQYSHNDEFPEFKNTRNFLLVNHDEQLKVYEDTIEKLGIRGDGEKIVSKPTTFINNHEPEDKVDVVLVDEAHLLWTQGKQSYRGKNQLRDIMARAKVTIAIFDPKQVLKTEEYLEAEQILALENHAYKQNNLIKLKNQLRINADDQTVDWIRAITDERVIKPMHKDSKGYDLRIFDDPVKMYHEIQKLNGDREKAGLSRLLATFDWPYKQKGHPDDSPYWMVNTGDLSLPWNLQLPVDESQSHLRKHLSWAEQSQTVDEVGSTYTIQGFDLNYAGVIIGPSVKYVDGKIVFDPELSENKNAVRNRTLSNGKKAQVSDELLANELNVLLTRGVNGLFIYAVDSDLNSRLHGEMMTKIRMVRNNE
>NZ_CP014924.1|WP_083215513.1|1811815_1813543_+|DUF262-domain-containing-protein
MSTLHKGYPFGTLLVAPLKSEGTKESKEYLRLLDGQQRLSTIIEYERNRAEYWRSLNGEEYHKSLSELNDILKQQTENDVAVDPIDEIQYNELLNGKYKLADWTDNYDRMKGRQTKIKLREMVENVQKRIHDYVDLDSLVLPAIYFYGDEADLPEVYENLNLNSSPLTKYEIFNATWADVNLILPEYNENSYLNNLANEVLSDVKNYYNRMTDEGEFELEGFSEDEITQNRIINLAEFGRAIGTMVTQRIPSLISKNDDKIKNEIGFGILGIATHIDNKNLVKIDKKLSYIQSNLEEILSRVDMISSKLNDIFARLLRQNISFSKNRTSPKYAYSTGLTTSFKALSYFATLWEMNKQDTEKTIYNIPAYYVFDYLTGVWSGHGDQRLYDYYHLVAKKNYLKPLTITQFNSAFAAWLSENNAMRKTFSKEVKALITIHSNLTYLSGTFNNGEDFEFEHIIPKARALKADKNLSSLNLSSLGNGMFLPKSLNNRKQEFTIYEASNKSDGIQKEPLLEVSNYKQLIHSSDYFSEKEFENIFSRLKKYDFEYVNKKIRGRAIRVGKSIGEKLITLKKFN
>NZ_CP014924.1|WP_065902289.1|1813637_1816532_-|DEAD/DEAH-box-helicase
MSTEDEIAKAVNFGFINNQTESLEIYQPTLVTNSHENTVLDALEDELRTATSFTIAVAFVTCGGLIDLKTILADLADHNVHGRLITSTYLNFNKPEVFEDLLNIPNLDVRLLDQDGFHTKAYHFDHNDYESVIVGSANLTQNALKKNFEWNLRVTSTERGDVVCDVKDDLDALWAKSKPLTEAWVLDYQQVWRPVPRASIKPSKTNKTEDLIQPNSMQVEALKAISNLRTEKHAKRALVVAATGTGKTYLAAFDVRNVKPERMLYVVHREQILSKAMKSFKKILGGKDSDYGILSGTQKNLDCRYTFATVNMAARKDVREQFGQDAFDYILIDEAHRVSQNVEGERASMYQKLMAYFHPKFMMGMTATPERTDGTNVYAYFDYNLAYENSLIDALDNDLLAPFHYIGVTDYEKNGQTITDTTDLKHLVSDERVAHLIKKTRYYGPAPSKLHGLIFVSRIDEGQKLAIKLNQQGFNAEFVYSATPIEKREDAVERLNNGELQYILTVDIFNEGVDIPCLNQIVMMRPTQSSIIFLQQLGRGLRKYHDKDYVTVLDFIGNYNENYMIPMAFDKAHSSNKEQIRKQIISPTISGVSTINFEHIARKRILDAVGRAKLDAMSRFRDAYKSLKDKIGRRQPTLLDFAQIGSVNVSDIVRKFKTLYNMRLKFEEEPIAELTDRQYKFLLFLSREIAVSKRPIEAILLNHLIQKGSLDDRQLRSLLSTQHIFYDEETLVNVASVLNVSYFMEMNQDKYGGIPLVDHQHNTWALSTQFKNDLRYFIFSEYVKDVCDSNLCALKKASFKFDERFTIGNKYFRNDVIKLLDWPGEQNAQNVGGYAMRPDKRFFPVFIALEKTEKFQNKMAYEDAFIDRGTMRWFSKSGRSTSSNQERTVINNPSYGMIQLFVKKSDDDKKEGNDFYYLGSAKIVEADDVTRINNEHKQIKLVSFKLKLQKPVDINLYHALSKFD

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Crispr_ID: NZ_CP014924_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_11

1817290-1817500

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCCCCACGCATGTGGGGGTGATCCC	PILER-CR
GTATTCCCCACGCATGTGGGGGTGATCC	CRISPRCasFinder
GTATTCCCCACGCATGTGGGGGTGATCC	CRT

3 spacers

cas8e,cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP014924_11

>merge|NZ_CP014924|11|1817290-1817500|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCACGCATGTGGGGGTGATCCCACCACGGGCAATGCGGGCAACGAATACGGTAGGTATTCCCCACGCATGTGGGGGTGATCCCGGTGAGCGTCGTGGAAAAATTCAAATCAAAGAGTATTCCCCACGCATGTGGGGGTGATCCTAAAGCAAAGTACGCTGTCTTAACTCGTAAGATTTATTCCCCACGGATGTGGGTGACTTTG

>NZ_CP014924|11|2|1817290-1817440|PILER-CR
GTATTCCCCACGCATGTGGGGGTGATCCC	ACCACGGGCAATGCGGGCAACGAATACGGTAG
GTATTCCCCACGCATGTGGGGGTGATCCC	GGTGAGCGTCGTGGAAAAATTCAAATCAAAGA
GTATTCCCCACGCATGTGGGGGTGATCCT

>NZ_CP014924|11|11|1817290-1817500|CRISPRCasFinder
GTATTCCCCACGCATGTGGGGGTGATCC	CACCACGGGCAATGCGGGCAACGAATACGGTAG
GTATTCCCCACGCATGTGGGGGTGATCC	CGGTGAGCGTCGTGGAAAAATTCAAATCAAAGA
GTATTCCCCACGCATGTGGGGGTGATCC	TAAAGCAAAGTACGCTGTCTTAACTCGTAAGAT
TTATTCCCCACGGATGTGGGTGACTTTG

>NZ_CP014924|11|2|1817290-1817500|CRT
GTATTCCCCACGCATGTGGGGGTGATCC	CACCACGGGCAATGCGGGCAACGAATACGGTAG
GTATTCCCCACGCATGTGGGGGTGATCC	CGGTGAGCGTCGTGGAAAAATTCAAATCAAAGA
GTATTCCCCACGCATGTGGGGGTGATCC	TAAAGCAAAGTACGCTGTCTTAACTCGTAAGAT
TTATTCCCCACGGATGTGGGTGACTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_065902278.1\|1807195_1807444_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_065902289.1\|1813637_1816532_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP014924.1\|WP_065902299.1\|1824989_1825658_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP014924.1\|WP_065902309.1\|1830369_1831845_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225306
NZ_CP014924.1\|WP_065902285.1\|1809933_1811712_+\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
NZ_CP014924.1\|WP_065902307.1\|1829713_1830253_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274100
NZ_CP014924.1\|WP_083215513.1\|1811815_1813543_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP014924.1\|WP_065902280.1\|1807727_1809428_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP014924.1\|WP_065902303.1\|1826583_1827243_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP014924.1\|WP_065902295.1\|1823209_1824280_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP014924.1\|WP_065902276.1\|1805889_1806630_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293807
NZ_CP014924.1\|WP_065902293.1\|1820876_1822598_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP014924.1\|WP_083215512.1\|1804955_1805861_+\|ethanolamine-utilization-protein-EutJ	unknown	unknown	gnl\|CDD\|237904
NZ_CP014924.1\|WP_065902273.1\|1802763_1803066_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_065902291.1\|1816515_1816929_-\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NZ_CP014924.1\|WP_065937600.1\|1827385_1828816_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|180854
NZ_CP014924.1\|WP_065902297.1\|1824260_1824977_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP014924.1\|WP_065902283.1\|1809592_1809916_+\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212144
NZ_CP014924.1\|WP_083215514.1\|1832112_1833915_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180854
NZ_CP014924.1\|WP_065902294.1\|1822604_1823204_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_083215514.1\|1832112_1833915_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|180854	PRK07121, PRK07121, FAD-binding protein.	3.78248e-50
NZ_CP014924.1\|WP_065902289.1\|1813637_1816532_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.21061e-75
NZ_CP014924.1\|WP_065902299.1\|1824989_1825658_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.00176e-74
NZ_CP014924.1\|WP_065902309.1\|1830369_1831845_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	7.10441e-11
NZ_CP014924.1\|WP_065902285.1\|1809933_1811712_+\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	1.21995e-107
NZ_CP014924.1\|WP_083215513.1\|1811815_1813543_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	5.25926e-08
NZ_CP014924.1\|WP_065902303.1\|1826583_1827243_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	4.55193e-33
NZ_CP014924.1\|WP_065902307.1\|1829713_1830253_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|274100	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.	0.000260782
NZ_CP014924.1\|WP_065902295.1\|1823209_1824280_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.71141e-143
NZ_CP014924.1\|WP_065902276.1\|1805889_1806630_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	8.85124e-46
NZ_CP014924.1\|WP_065902293.1\|1820876_1822598_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.88062e-80
NZ_CP014924.1\|WP_065902294.1\|1822604_1823204_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	3.81352e-29
NZ_CP014924.1\|WP_065902280.1\|1807727_1809428_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	1.61165e-26
NZ_CP014924.1\|WP_065902291.1\|1816515_1816929_-\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	5.64638e-42
NZ_CP014924.1\|WP_065937600.1\|1827385_1828816_-\|FAD-binding-protein	gnl\|CDD\|180854	PRK07121, PRK07121, FAD-binding protein.	2.76088e-44
NZ_CP014924.1\|WP_065902297.1\|1824260_1824977_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.65588e-50
NZ_CP014924.1\|WP_065902283.1\|1809592_1809916_+\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212144	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs. RS21-C6 proteins, highly expressed in all vertebrate genomes and green plants, act as house-cleaning enzymes, removing 5-methyl dCTP (m5dCTP) in order to prevent gene silencing. They show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, RS21-C6 contains a single MazG-like domain and functions as a tetramer (a dimer of dimers) with a typical four-helical bundle. Divalent ions, such as Mg2+, are required for its pyrophosphatase activity. This family also includes a pyrophosphatase from Archaeoglobus fulgidus (Af1178). Although its biological role remains unclear, Af1178 shows significant sequence similarity to the mouse RS21-C6 protein.	9.79164e-23
NZ_CP014924.1\|WP_083215512.1\|1804955_1805861_+\|ethanolamine-utilization-protein-EutJ	gnl\|CDD\|237904	PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional.	6.5669e-124

>NZ_CP014924.1|WP_065902291.1|1816515_1816929_-|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MKKIQVVGAIILKSNKLLAAQRAANRALGSLWEFPGGKIEPDESPENALARELSEEFGAKATIFEPFTINGDATFDFGEVILHCYYARLDSEIIKTIAHDDLRWVTESESLELEWAPTDVPVIKELAKAGFTYEYRR
>NZ_CP014924.1|WP_065902289.1|1813637_1816532_-|DEAD/DEAH-box-helicase
MSTEDEIAKAVNFGFINNQTESLEIYQPTLVTNSHENTVLDALEDELRTATSFTIAVAFVTCGGLIDLKTILADLADHNVHGRLITSTYLNFNKPEVFEDLLNIPNLDVRLLDQDGFHTKAYHFDHNDYESVIVGSANLTQNALKKNFEWNLRVTSTERGDVVCDVKDDLDALWAKSKPLTEAWVLDYQQVWRPVPRASIKPSKTNKTEDLIQPNSMQVEALKAISNLRTEKHAKRALVVAATGTGKTYLAAFDVRNVKPERMLYVVHREQILSKAMKSFKKILGGKDSDYGILSGTQKNLDCRYTFATVNMAARKDVREQFGQDAFDYILIDEAHRVSQNVEGERASMYQKLMAYFHPKFMMGMTATPERTDGTNVYAYFDYNLAYENSLIDALDNDLLAPFHYIGVTDYEKNGQTITDTTDLKHLVSDERVAHLIKKTRYYGPAPSKLHGLIFVSRIDEGQKLAIKLNQQGFNAEFVYSATPIEKREDAVERLNNGELQYILTVDIFNEGVDIPCLNQIVMMRPTQSSIIFLQQLGRGLRKYHDKDYVTVLDFIGNYNENYMIPMAFDKAHSSNKEQIRKQIISPTISGVSTINFEHIARKRILDAVGRAKLDAMSRFRDAYKSLKDKIGRRQPTLLDFAQIGSVNVSDIVRKFKTLYNMRLKFEEEPIAELTDRQYKFLLFLSREIAVSKRPIEAILLNHLIQKGSLDDRQLRSLLSTQHIFYDEETLVNVASVLNVSYFMEMNQDKYGGIPLVDHQHNTWALSTQFKNDLRYFIFSEYVKDVCDSNLCALKKASFKFDERFTIGNKYFRNDVIKLLDWPGEQNAQNVGGYAMRPDKRFFPVFIALEKTEKFQNKMAYEDAFIDRGTMRWFSKSGRSTSSNQERTVINNPSYGMIQLFVKKSDDDKKEGNDFYYLGSAKIVEADDVTRINNEHKQIKLVSFKLKLQKPVDINLYHALSKFD
>NZ_CP014924.1|WP_083215513.1|1811815_1813543_+|DUF262-domain-containing-protein
MSTLHKGYPFGTLLVAPLKSEGTKESKEYLRLLDGQQRLSTIIEYERNRAEYWRSLNGEEYHKSLSELNDILKQQTENDVAVDPIDEIQYNELLNGKYKLADWTDNYDRMKGRQTKIKLREMVENVQKRIHDYVDLDSLVLPAIYFYGDEADLPEVYENLNLNSSPLTKYEIFNATWADVNLILPEYNENSYLNNLANEVLSDVKNYYNRMTDEGEFELEGFSEDEITQNRIINLAEFGRAIGTMVTQRIPSLISKNDDKIKNEIGFGILGIATHIDNKNLVKIDKKLSYIQSNLEEILSRVDMISSKLNDIFARLLRQNISFSKNRTSPKYAYSTGLTTSFKALSYFATLWEMNKQDTEKTIYNIPAYYVFDYLTGVWSGHGDQRLYDYYHLVAKKNYLKPLTITQFNSAFAAWLSENNAMRKTFSKEVKALITIHSNLTYLSGTFNNGEDFEFEHIIPKARALKADKNLSSLNLSSLGNGMFLPKSLNNRKQEFTIYEASNKSDGIQKEPLLEVSNYKQLIHSSDYFSEKEFENIFSRLKKYDFEYVNKKIRGRAIRVGKSIGEKLITLKKFN
>NZ_CP014924.1|WP_065902285.1|1809933_1811712_+|DUF2075-domain-containing-protein
MSEDHIDAPIVKRIGYNAVDLWELSKKPDDHELLFDYPTVYLIYNRDKKGKYDVYVGETNDIKQRTRQHLIEDPKTREDWDELRISEDASMIIIGHNRFNKSLTLDIENKMMLYMSGITDVDRLNNRRENEQNKYFTDDIRDVIFSKIWRELRTVDNDLFPLERIIQDSAIFKASPFHKLTDEQNDAKNLILERVSEALIGNQTGQLILVEGEAGSGKTVLLSTIFYLMTQYSHNDEFPEFKNTRNFLLVNHDEQLKVYEDTIEKLGIRGDGEKIVSKPTTFINNHEPEDKVDVVLVDEAHLLWTQGKQSYRGKNQLRDIMARAKVTIAIFDPKQVLKTEEYLEAEQILALENHAYKQNNLIKLKNQLRINADDQTVDWIRAITDERVIKPMHKDSKGYDLRIFDDPVKMYHEIQKLNGDREKAGLSRLLATFDWPYKQKGHPDDSPYWMVNTGDLSLPWNLQLPVDESQSHLRKHLSWAEQSQTVDEVGSTYTIQGFDLNYAGVIIGPSVKYVDGKIVFDPELSENKNAVRNRTLSNGKKAQVSDELLANELNVLLTRGVNGLFIYAVDSDLNSRLHGEMMTKIRMVRNNE
>NZ_CP014924.1|WP_065902283.1|1809592_1809916_+|nucleotide-pyrophosphohydrolase
MEYKVVIDELIAFRNQKNWQKYHTLPGLARALSVESAEVNQLFLWQDSENDDVILQDGKAAQDLKMELADTLTYAYYMCEKLGVEPNDLVHEKLQTNKKRHWKFDED
>NZ_CP014924.1|WP_065902280.1|1807727_1809428_+|DUF262-domain-containing-protein
MQDFVDIPVPSRFRLGELFKDNNFKVPLYQRNFAWKKEEVDDFWNDLMDIVSGERSSHFFGQIVTFQNENHIQEIIDGQQRLTTSSLFLAVIRDVANELFESNRDHLMNASGDSLRDVMYNVKKYLRGEDNSMSSLMLQEDSEDPDKSLSAFFIQLVHQGHDVAETEPERKLVSAYKMLHQQIISAIKQEKTITDRVNLLKTIFECFTDRFYIVMISAPSQKDAFIIFETLNSRGKDLKASDMIKNHLMYVSGDSMKAANGLWNIISQRLKEDSNRITKFIRTYWAARSKLVTEAKLYRSLSQKIKTENDVKNFLEDLGHLVDLYAVLESPMSPKSNLEYFSNDLLLEKVDILNRLQVKLYYPVMLSMKIADFNEEEMLKVVNKLLSVFIRHRTIIHDGTNTLESGFSNVAEKIYSGELSSVQMINEWMDDNLLRTDDEVRSSFDTLKKDGGLRGAKKWTIVYLLSELYDEDLYEKAFDNDNYQLVHISENQVSSELLDYLGNWTMIEKTLKTEFDKAKSINEQQALLNKSDLTENHDIANLLPSWSDSAVRGRQDRLKKNVTVMW
>NZ_CP014924.1|WP_065902278.1|1807195_1807444_+|hypothetical-protein
MKTMKKTVLTVVVALGLVGGSVHAILTTTVAHARTTYVWIAPNHGKKYHYTKSCRGLTLAKSYRHVTLKWAKSHHYTKCKLG
>NZ_CP014924.1|WP_065902276.1|1805889_1806630_+|MBL-fold-metallo-hydrolase
MSELEPLKVTQLDDDLYQFQLDFVHAFLIHDETDGWILIDAGFPVKPEHPNILARALKQIGLRPCDIDQIISTHSHPDHVGNLDLIEAQSHAPIWMNDVEADVLEKRVPMRPVFTLTGGPSNLDHPRAAVPVSNRITGETQLPFAGGIDFVPTPGHSIGHCSLLWHRHGGVLFTGDLVVNETGQLRMAAGNENYDQERESLIKVGQLQFDPLLVSHGDDILADAADIYRQALPRLVAQAQQAITIQ
>NZ_CP014924.1|WP_083215512.1|1804955_1805861_+|ethanolamine-utilization-protein-EutJ
MAVKKTKKTAGEVTPQKKAAPAKKKSNLDIANEKLDEFAKVVNTDKAMRKAKKGETFKCGVDLGTSSIVLTVLDQNDNPIYGAFEYDHAVRDGIVVNYMESVNILKRLKAKAEEVLGVELTTACGAIPPQTGEGASKIVQNVIESAEFICNAVVDEPTAAAKFLAMKDGTVVDIGGGTTGISIFKNGKLIDVMDEPTGGFHMTLVLGGAHHIDNDAAELLKRDPKREKEVFGTIKPVVEKMATITKRGPSVPVVEPVIVVGGAINFEDFIPTFAKTLSMPAYKPDFPQFVTPLGIGMYDHE
>NZ_CP014924.1|WP_065902273.1|1802763_1803066_-|hypothetical-protein
MLKNEIIPYDYDYHNSDYVDEVGEVQAEHDDSMALMKGRTATLTKINFISDIPDGPYEDDNEKLIIARNLISAHEEKILKEWYMGTKKVEILYYLFIGKI
>NZ_CP014924.1|WP_065902293.1|1820876_1822598_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MATRSFNLTTEPWIKVIESATNQEKTVSLIEFFENAQDYQQLAGDMRSQDFVVFRLLLAILTTIYSRVDFNSDPYDWLELDQQFRVSGDVEQDDYQEDDLLATWQQLYENKKFSSAVKDYLIANQDQFDLFGDHPFYQVTEAEFDALVPDNKKVATGKGTVGLKQINRRISESGNTLAVFSPKTGNFKNHVPIDEFARWLVMYQNVSGVTDKTKIKTEASFSISTGWVYGLNPVFAKGATLFDTLILNLVLVPDADQYAVQRPVWEYNSVLDYVEDRKKELVPDNIAQLYTTWSRILHVDWQDDGQPVIFSAGIPIFDNKNVFIEPMTIWHRDPKAGYYTPLYRDIGALSMAMWRNFGLYVGVGDDDGIHEPGIVDWLHRLKDEGYVQQKQAITLSSINLLNDGNSASQTPAAEVDDDMQIEADVLLAKNPEEANYWPQQIDAVIKLTQQVGLDYRHFGADIAAIRGQKNSTFANDITAKFYERLNEPFKSWLRSLTNEDDRGQKVLEWEKQLNTIVFESKRRMISRAKIKDIRGAMVERPGRKDEIIYNNIFMAGNKLERNVYARLKLNKKG
>NZ_CP014924.1|WP_065902294.1|1822604_1823204_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MGKQIVKTTAHIIQQLYGNGNLNKAALAGIRNATSIESPQAQAVWPILMANLDENWLSTTGKPTRAETAIFTAVRLYAIHQQGQTNSVYGPSYDKQEDGGVPLFTALARLRQNPENQVALDRRVQNLLGTTNVASALNSLNHIVPILKQRNSAQKIDYAKLADDLYWYQVGYEQANGVRLVWGQQYYQNLNLKAEIEGK
>NZ_CP014924.1|WP_065902295.1|1823209_1824280_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTQNLYVDINVLQTVPSSNINRDDTGAPKTAIYGGVTRSRVSSQSWKKAVRDYFKDAHVVASSRTLDVPKLLANALMATDSSLDEDAAIKKSIEVLKLGGVKNFKDNRTKALLFVSQGQIEKLASYAVNNDKLDAKEIKKVLKGNQSLDLALFGRMVADEPELNVEGSVQVAHAISTHEIIPEFDYFTASDDENKTTSGAAMLGSSEYNSATLYRYANVNLNELVHNIGESDAINGAMTFIKQFILTMPTGKQNSYANKTVPNYVMVTIRPDTPVNLVSAFENPVKSHNGYVEESISRLEAEYQRTAKFVESPILTTVLGNDDTTIGDKMTNLSDLLNEVTERLTKAVQDENTDD
>NZ_CP014924.1|WP_065902297.1|1824260_1824977_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLTIKLTSPLQSYGDEATFLRRTSGSYPSKSAIVGMVAAALGYSRDDARILKLNELGFAVRIDQVGVSLTDFQTVVWKKGKGGTKVSYRDYLQDAVFVVAIGSDDDAWIDAIHYALLHPHFQLFLGRRANVPAGVLETELFSDIDPVAALKTVQWQAADWYRKKHRNHSSMILDIIADANLIPTNRTQLVKDEVGSFDQRNRYFEYRGIALDSVEVTNNRFEDNRDDTTHDIMGSL
>NZ_CP014924.1|WP_065902299.1|1824989_1825658_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDVNNRRKTKDLTHLGAYHNWIEQSFPEEIAANERQRHLWRIDQLNGKKYLLLLSQEAPDTEALARYGVGGSVQTKSYDQFLNGINDGELMRFRLTANPVHAVPQPGKNQPKIYPHIKVDQQKGWLIKRADKLGFELIKKQQSETIEDVNDLAFDIVSRDWPRLARKQSRGAKLSRVSFEGMLRVTDAVTFRQTLVNGIGKEKAFGMGLMTVIPV
>NZ_CP014924.1|WP_065902303.1|1826583_1827243_+|N-acetyltransferase
MTNPVTGNIQIRNEHPKDYRSVEELIRTAFWNVYTPGCYEHYLVHIMRAHPDFVTKLDLVLTVDDKIVGSVMFTKAKLIAENGKIKQVLTLGPLAIHPDYQRLGLGKRLINEALERAHKLEFDTVILMGAPSNYVGAGFKSAMRYDVSMGRDQYLTALLVKELVPGVLAGHHWHFESSPVMDVDMNAVDVFDQEFDALPKEWRPSQEEFYIISHSYMQK
>NZ_CP014924.1|WP_065937600.1|1827385_1828816_-|FAD-binding-protein
MFPKKTDYDLVIVGGGLSGLAAAVAAGEKHLTTLVLEKGRTLGGDGNYVEGAMGVDSAMQKEAGITIDKTQLLQDELNYSHYEASAPHLKKLIDASGATIDWLQSLGVSFTKVGPQGKSWPTIHTFEGGGHAAIEKLKAKADEFGIEFVTSVSAQRLMQSNGHISGLVIKNEATGQYRELTAPNVLLATGGYVDNPELVKKRTPFVGCLLTVSDGKSTGDGMQLAWAAGAQHYSMGAIQYGGGAIYDRQTPPFVHMMSQLGAAATQEAILWVNERGERFVNEDVNDNMCHAGSAILTQSRVFSIFDQTAVDHLAKVGLYKIVGNSPVSPDTLDKLPEEIEADLGKHAPYLTKADSIDELASKLGLAKLPATLARYNALVGTGADTDFGKNRDYLTAVADGPFYAVELGVGMACALGGIRVNDNNEVLNDYGYAVPRLFAAGNDAAGMLVGDTYAVTLPGSTAGYAAFSGRNAVANM
>NZ_CP014924.1|WP_065902307.1|1829713_1830253_-|TetR/AcrR-family-transcriptional-regulator
MTAEDHLITAFLDLLAVEDYNKISVSQLMNRVHLTRTYFYQLYSDKSELAREAFFSLIREYLLGISQAITKNGTANERAVQQGMQFISVHRDQMQLLMQVQKGDFNLLTEFQDRIKTIIVAEVSKSRQVSAPVLDYFSDLFAASTITTLNWFLTHDEVSTDEMIRLASTSLSQGVVSIL
>NZ_CP014924.1|WP_065902309.1|1830369_1831845_-|helix-turn-helix-domain-containing-protein
MRINDLIASLGNPTIKFKNPALLTTNFFDADLDISQSCLTLHTINNDTPCYLRLVQDGNTGPDNTLYLDLPYALTTLKDKVQGALQWDYVASQTFESIQSDVTDQLPIQNYLDVFARHLDQSLILFDRHDELVISSTYGSLGRLSTQAVIHRLLPTLADITGSLIFNDTTNTQLAAITIKPGFTFATPLADRKQAAYTFGLLRRIGTVLVHEIETLAAPADKLATNLPAAYFSNTLLDLIHSQTINADTLKDWRLDPKVSAYIIRITFAMPPESLMVTDFLRVLTPLLGDLRYCIENTSLILICSTGQPLNTMKATLATLYQYAQKYDFSITISAPFNTIEQASVAYQQCVSTQAYAVTVPLPDRILFFQDVALLELVDQVKGRVNLTDYVHPDLQYLMAYDDDHHTDYLNTLHFYLYDDLNTKRAAADLHIHPNTLLYRIGKIKTLLNYDFSFGKQNLDYRMGFLILYSQNKVRLPRSRRTPAEDPATTI
>NZ_CP014924.1|WP_083215514.1|1832112_1833915_+|FAD-dependent-oxidoreductase
MKDGSYQAKGQGQDGELTVKVTVTDGTLAQVEVVENHETPGVSSRALTDIPKRIVDHQTYDVDVISGATKTSTGISNAVKSALAQANAGTAFSQHVSEVSASDAPVEQLTADLAIIGAGPAGLAAAVAAGEHGLKTVVFEKNGVAGGTANMGMGPLGIDTDIQRQGFNDISVPEALEEHMTYTHYRVDEDLVQTYFNLSADTIKWLQDMGVQFAGAFKYFKESNATWHVVQPDDGSQPGPGAAADMNKHLKARAEKLGATFYLETPATSITTADGKITGITAQANNGQQYAVTASAVLVATGGFGSSKQMLHDELGLNLNEDFFTFNVPGIEGDGLRMMWQAGANKDTTSETVETIYLLPDNFQYFNSDAALRQPNLLINQRGDRFMNEGDMGNTTYTGNALRLQPGNYGYCVMDQSLLDDYKANGPAIADIVHPASCFDDAEGEIEKAQANNYEGIIVADTLSELAEKLGINETKLQQTIDDYNQLCVQNLDTQFHKPAKFLKPIRGNGCYIVGKYFTGAYSTLGGIRTNKFGEVYADATHAVPGLYSAGQDANTIYGDSYNFTLPGNSMGFAVNSGRMAANGIAAYLNERSSKAAVKV

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Crispr_ID: NZ_CP014924_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_12

1825740-1826134

TypeI-E

I-B,III-A,III-B:NA

Consensus_repeat	Method
GTATTCCCCACGCATGTGGGGGTGATCC	PILER-CR
GTATTCCCCACGCATGTGGGGGTGATCC	CRISPRCasFinder
GTATTCCCCACGCATGTGGG	CRT

6 spacers

cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_CP014924_12

>merge|NZ_CP014924|12|1825740-1826134|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCACGCATGTGGGGGTGATCCTTCACGGGCCCTTGAAAGTGCGCAAACCCTCCGGTATTCCCCACGCATGTGGGGGTGATCCTATGACCACAGGACCCAGTTGTCATTATCGGCTGTATTCCCCACGCATGTGGGGGGTGATCCCTTGAACGTCAAGTCTTTCCACGCGTCCATGTCGTATTCCCCACGCATGTGGGGGTGATCCTAAGTCGAATTCCCCACGAAAAGACTCAATTGTGTATTCCCCACGCATGTGGGTGTGATCCCTTGCCGTTTGACCGTTCAGCCTCGTCACCGGTGTATTCCCCACGCATGTGGGGGTGATCCTCACTATCTCTTTCAGCAGTTCTCATCGGCTTGATATTCCCCACGCATGTGGGTGTGGTTC

>NZ_CP014924|12|3|1825740-1826073|PILER-CR
GTATTCCCCACGCATGTGGGGGTGATCC	TTCACGGGCCCTTGAAAGTGCGCAAACCCTCCG
GTATTCCCCACGCATGTGGGGGTGATCC	TATGACCACAGGACCCAGTTGTCATTATCGGCT
GTATTCCCCACGCATGTGGGGGGTGATC	CCTTGAACGTCAAGTCTTTCCACGCGTCCATGTCGTATTC
CCCACGCATGTGGGGGTGATCCTAAGTC	GAATTCCCCACGAAAAGACTCAATTGTGTATTC
CCCACGCATGTGGGTGTGATCCCTTGCC	GTTTGACCGTTCAGCCTCGTCACCGGTGTATTC
CCCACGCATGTGGGGGTGATCC

>NZ_CP014924|12|12|1825740-1826134|CRISPRCasFinder
GTATTCCCCACGCATGTGGGGGTGATCC	TTCACGGGCCCTTGAAAGTGCGCAAACCCTCCG
GTATTCCCCACGCATGTGGGGGTGATCC	TATGACCACAGGACCCAGTTGTCATTATCGGCT
GTATTCCCCACGCATGTGGGGGGTGATC	CCTTGAACGTCAAGTCTTTCCACGCGTCCATGTC
GTATTCCCCACGCATGTGGGGGTGATCC	TAAGTCGAATTCCCCACGAAAAGACTCAATTGT
GTATTCCCCACGCATGTGGGTGTGATCC	CTTGCCGTTTGACCGTTCAGCCTCGTCACCGGT
GTATTCCCCACGCATGTGGGGGTGATCC	TCACTATCTCTTTCAGCAGTTCTCATCGGCTTG
ATATTCCCCACGCATGTGGGTGTGGTTC

>NZ_CP014924|12|3|1825740-1826126|CRT
GTATTCCCCACGCATGTGGG	GGTGATCCTTCACGGGCCCTTGAAAGTGCGCAAACCCTCCG
GTATTCCCCACGCATGTGGG	GGTGATCCTATGACCACAGGACCCAGTTGTCATTATCGGCT
GTATTCCCCACGCATGTGGG	GGGTGATCCCTTGAACGTCAAGTCTTTCCACGCGTCCATGTC
GTATTCCCCACGCATGTGGG	GGTGATCCTAAGTCGAATTCCCCACGAAAAGACTCAATTGT
GTATTCCCCACGCATGTGGG	TGTGATCCCTTGCCGTTTGACCGTTCAGCCTCGTCACCGGT
GTATTCCCCACGCATGTGGG	GGTGATCCTCACTATCTCTTTCAGCAGTTCTCATCGGCTTG
ATATTCCCCACGCATGTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_083215514.1\|1832112_1833915_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180854
NZ_CP014924.1\|WP_065902289.1\|1813637_1816532_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP014924.1\|WP_065937601.1\|1836086_1837472_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP014924.1\|WP_065902299.1\|1824989_1825658_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_CP014924.1\|WP_065902309.1\|1830369_1831845_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225306
NZ_CP014924.1\|WP_065902285.1\|1809933_1811712_+\|DUF2075-domain-containing-protein	unknown	unknown	gnl\|CDD\|378274
NZ_CP014924.1\|WP_065902319.1\|1839377_1840667_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|183075
NZ_CP014924.1\|WP_083215513.1\|1811815_1813543_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP014924.1\|WP_065902307.1\|1829713_1830253_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274100
NZ_CP014924.1\|WP_065902295.1\|1823209_1824280_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP014924.1\|WP_065902297.1\|1824260_1824977_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_CP014924.1\|WP_065902311.1\|1833949_1835989_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274912
NZ_CP014924.1\|WP_065902293.1\|1820876_1822598_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP014924.1\|WP_065902294.1\|1822604_1823204_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP014924.1\|WP_065902291.1\|1816515_1816929_-\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|239517
NZ_CP014924.1\|WP_065937600.1\|1827385_1828816_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|180854
NZ_CP014924.1\|WP_065937602.1\|1838457_1839279_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223657
NZ_CP014924.1\|WP_065902303.1\|1826583_1827243_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP014924.1\|WP_065902283.1\|1809592_1809916_+\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212144
NZ_CP014924.1\|WP_065902315.1\|1837486_1838062_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_083215514.1\|1832112_1833915_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|180854	PRK07121, PRK07121, FAD-binding protein.	3.78248e-50
NZ_CP014924.1\|WP_065902289.1\|1813637_1816532_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	1.21061e-75
NZ_CP014924.1\|WP_065937601.1\|1836086_1837472_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.41429e-58
NZ_CP014924.1\|WP_065902299.1\|1824989_1825658_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.00176e-74
NZ_CP014924.1\|WP_065902309.1\|1830369_1831845_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	7.10441e-11
NZ_CP014924.1\|WP_065902285.1\|1809933_1811712_+\|DUF2075-domain-containing-protein	gnl\|CDD\|378274	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.	1.21995e-107
NZ_CP014924.1\|WP_065902319.1\|1839377_1840667_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	5.92334e-152
NZ_CP014924.1\|WP_083215513.1\|1811815_1813543_+\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	5.25926e-08
NZ_CP014924.1\|WP_065902307.1\|1829713_1830253_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|274100	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.	0.000260782
NZ_CP014924.1\|WP_065902295.1\|1823209_1824280_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.71141e-143
NZ_CP014924.1\|WP_065902297.1\|1824260_1824977_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.65588e-50
NZ_CP014924.1\|WP_065902311.1\|1833949_1835989_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274912	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2. The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown.	5.6414e-90
NZ_CP014924.1\|WP_065902293.1\|1820876_1822598_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.88062e-80
NZ_CP014924.1\|WP_065902294.1\|1822604_1823204_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	3.81352e-29
NZ_CP014924.1\|WP_065902291.1\|1816515_1816929_-\|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	5.64638e-42
NZ_CP014924.1\|WP_065937600.1\|1827385_1828816_-\|FAD-binding-protein	gnl\|CDD\|180854	PRK07121, PRK07121, FAD-binding protein.	2.76088e-44
NZ_CP014924.1\|WP_065937602.1\|1838457_1839279_+\|hypothetical-protein	gnl\|CDD\|223657	COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion].	1.68899e-30
NZ_CP014924.1\|WP_065902303.1\|1826583_1827243_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	4.55193e-33
NZ_CP014924.1\|WP_065902283.1\|1809592_1809916_+\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212144	cd11537, NTP-PPase_RS21-C6_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs. RS21-C6 proteins, highly expressed in all vertebrate genomes and green plants, act as house-cleaning enzymes, removing 5-methyl dCTP (m5dCTP) in order to prevent gene silencing. They show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, RS21-C6 contains a single MazG-like domain and functions as a tetramer (a dimer of dimers) with a typical four-helical bundle. Divalent ions, such as Mg2+, are required for its pyrophosphatase activity. This family also includes a pyrophosphatase from Archaeoglobus fulgidus (Af1178). Although its biological role remains unclear, Af1178 shows significant sequence similarity to the mouse RS21-C6 protein.	9.79164e-23
NZ_CP014924.1\|WP_065902315.1\|1837486_1838062_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	8.14216e-37

>NZ_CP014924.1|WP_065902299.1|1824989_1825658_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEIDVNNRRKTKDLTHLGAYHNWIEQSFPEEIAANERQRHLWRIDQLNGKKYLLLLSQEAPDTEALARYGVGGSVQTKSYDQFLNGINDGELMRFRLTANPVHAVPQPGKNQPKIYPHIKVDQQKGWLIKRADKLGFELIKKQQSETIEDVNDLAFDIVSRDWPRLARKQSRGAKLSRVSFEGMLRVTDAVTFRQTLVNGIGKEKAFGMGLMTVIPV
>NZ_CP014924.1|WP_065902297.1|1824260_1824977_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLTIKLTSPLQSYGDEATFLRRTSGSYPSKSAIVGMVAAALGYSRDDARILKLNELGFAVRIDQVGVSLTDFQTVVWKKGKGGTKVSYRDYLQDAVFVVAIGSDDDAWIDAIHYALLHPHFQLFLGRRANVPAGVLETELFSDIDPVAALKTVQWQAADWYRKKHRNHSSMILDIIADANLIPTNRTQLVKDEVGSFDQRNRYFEYRGIALDSVEVTNNRFEDNRDDTTHDIMGSL
>NZ_CP014924.1|WP_065902295.1|1823209_1824280_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTQNLYVDINVLQTVPSSNINRDDTGAPKTAIYGGVTRSRVSSQSWKKAVRDYFKDAHVVASSRTLDVPKLLANALMATDSSLDEDAAIKKSIEVLKLGGVKNFKDNRTKALLFVSQGQIEKLASYAVNNDKLDAKEIKKVLKGNQSLDLALFGRMVADEPELNVEGSVQVAHAISTHEIIPEFDYFTASDDENKTTSGAAMLGSSEYNSATLYRYANVNLNELVHNIGESDAINGAMTFIKQFILTMPTGKQNSYANKTVPNYVMVTIRPDTPVNLVSAFENPVKSHNGYVEESISRLEAEYQRTAKFVESPILTTVLGNDDTTIGDKMTNLSDLLNEVTERLTKAVQDENTDD
>NZ_CP014924.1|WP_065902294.1|1822604_1823204_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MGKQIVKTTAHIIQQLYGNGNLNKAALAGIRNATSIESPQAQAVWPILMANLDENWLSTTGKPTRAETAIFTAVRLYAIHQQGQTNSVYGPSYDKQEDGGVPLFTALARLRQNPENQVALDRRVQNLLGTTNVASALNSLNHIVPILKQRNSAQKIDYAKLADDLYWYQVGYEQANGVRLVWGQQYYQNLNLKAEIEGK
>NZ_CP014924.1|WP_065902293.1|1820876_1822598_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MATRSFNLTTEPWIKVIESATNQEKTVSLIEFFENAQDYQQLAGDMRSQDFVVFRLLLAILTTIYSRVDFNSDPYDWLELDQQFRVSGDVEQDDYQEDDLLATWQQLYENKKFSSAVKDYLIANQDQFDLFGDHPFYQVTEAEFDALVPDNKKVATGKGTVGLKQINRRISESGNTLAVFSPKTGNFKNHVPIDEFARWLVMYQNVSGVTDKTKIKTEASFSISTGWVYGLNPVFAKGATLFDTLILNLVLVPDADQYAVQRPVWEYNSVLDYVEDRKKELVPDNIAQLYTTWSRILHVDWQDDGQPVIFSAGIPIFDNKNVFIEPMTIWHRDPKAGYYTPLYRDIGALSMAMWRNFGLYVGVGDDDGIHEPGIVDWLHRLKDEGYVQQKQAITLSSINLLNDGNSASQTPAAEVDDDMQIEADVLLAKNPEEANYWPQQIDAVIKLTQQVGLDYRHFGADIAAIRGQKNSTFANDITAKFYERLNEPFKSWLRSLTNEDDRGQKVLEWEKQLNTIVFESKRRMISRAKIKDIRGAMVERPGRKDEIIYNNIFMAGNKLERNVYARLKLNKKG
>NZ_CP014924.1|WP_065902291.1|1816515_1816929_-|(deoxy)nucleoside-triphosphate-pyrophosphohydrolase
MKKIQVVGAIILKSNKLLAAQRAANRALGSLWEFPGGKIEPDESPENALARELSEEFGAKATIFEPFTINGDATFDFGEVILHCYYARLDSEIIKTIAHDDLRWVTESESLELEWAPTDVPVIKELAKAGFTYEYRR
>NZ_CP014924.1|WP_065902289.1|1813637_1816532_-|DEAD/DEAH-box-helicase
MSTEDEIAKAVNFGFINNQTESLEIYQPTLVTNSHENTVLDALEDELRTATSFTIAVAFVTCGGLIDLKTILADLADHNVHGRLITSTYLNFNKPEVFEDLLNIPNLDVRLLDQDGFHTKAYHFDHNDYESVIVGSANLTQNALKKNFEWNLRVTSTERGDVVCDVKDDLDALWAKSKPLTEAWVLDYQQVWRPVPRASIKPSKTNKTEDLIQPNSMQVEALKAISNLRTEKHAKRALVVAATGTGKTYLAAFDVRNVKPERMLYVVHREQILSKAMKSFKKILGGKDSDYGILSGTQKNLDCRYTFATVNMAARKDVREQFGQDAFDYILIDEAHRVSQNVEGERASMYQKLMAYFHPKFMMGMTATPERTDGTNVYAYFDYNLAYENSLIDALDNDLLAPFHYIGVTDYEKNGQTITDTTDLKHLVSDERVAHLIKKTRYYGPAPSKLHGLIFVSRIDEGQKLAIKLNQQGFNAEFVYSATPIEKREDAVERLNNGELQYILTVDIFNEGVDIPCLNQIVMMRPTQSSIIFLQQLGRGLRKYHDKDYVTVLDFIGNYNENYMIPMAFDKAHSSNKEQIRKQIISPTISGVSTINFEHIARKRILDAVGRAKLDAMSRFRDAYKSLKDKIGRRQPTLLDFAQIGSVNVSDIVRKFKTLYNMRLKFEEEPIAELTDRQYKFLLFLSREIAVSKRPIEAILLNHLIQKGSLDDRQLRSLLSTQHIFYDEETLVNVASVLNVSYFMEMNQDKYGGIPLVDHQHNTWALSTQFKNDLRYFIFSEYVKDVCDSNLCALKKASFKFDERFTIGNKYFRNDVIKLLDWPGEQNAQNVGGYAMRPDKRFFPVFIALEKTEKFQNKMAYEDAFIDRGTMRWFSKSGRSTSSNQERTVINNPSYGMIQLFVKKSDDDKKEGNDFYYLGSAKIVEADDVTRINNEHKQIKLVSFKLKLQKPVDINLYHALSKFD
>NZ_CP014924.1|WP_083215513.1|1811815_1813543_+|DUF262-domain-containing-protein
MSTLHKGYPFGTLLVAPLKSEGTKESKEYLRLLDGQQRLSTIIEYERNRAEYWRSLNGEEYHKSLSELNDILKQQTENDVAVDPIDEIQYNELLNGKYKLADWTDNYDRMKGRQTKIKLREMVENVQKRIHDYVDLDSLVLPAIYFYGDEADLPEVYENLNLNSSPLTKYEIFNATWADVNLILPEYNENSYLNNLANEVLSDVKNYYNRMTDEGEFELEGFSEDEITQNRIINLAEFGRAIGTMVTQRIPSLISKNDDKIKNEIGFGILGIATHIDNKNLVKIDKKLSYIQSNLEEILSRVDMISSKLNDIFARLLRQNISFSKNRTSPKYAYSTGLTTSFKALSYFATLWEMNKQDTEKTIYNIPAYYVFDYLTGVWSGHGDQRLYDYYHLVAKKNYLKPLTITQFNSAFAAWLSENNAMRKTFSKEVKALITIHSNLTYLSGTFNNGEDFEFEHIIPKARALKADKNLSSLNLSSLGNGMFLPKSLNNRKQEFTIYEASNKSDGIQKEPLLEVSNYKQLIHSSDYFSEKEFENIFSRLKKYDFEYVNKKIRGRAIRVGKSIGEKLITLKKFN
>NZ_CP014924.1|WP_065902285.1|1809933_1811712_+|DUF2075-domain-containing-protein
MSEDHIDAPIVKRIGYNAVDLWELSKKPDDHELLFDYPTVYLIYNRDKKGKYDVYVGETNDIKQRTRQHLIEDPKTREDWDELRISEDASMIIIGHNRFNKSLTLDIENKMMLYMSGITDVDRLNNRRENEQNKYFTDDIRDVIFSKIWRELRTVDNDLFPLERIIQDSAIFKASPFHKLTDEQNDAKNLILERVSEALIGNQTGQLILVEGEAGSGKTVLLSTIFYLMTQYSHNDEFPEFKNTRNFLLVNHDEQLKVYEDTIEKLGIRGDGEKIVSKPTTFINNHEPEDKVDVVLVDEAHLLWTQGKQSYRGKNQLRDIMARAKVTIAIFDPKQVLKTEEYLEAEQILALENHAYKQNNLIKLKNQLRINADDQTVDWIRAITDERVIKPMHKDSKGYDLRIFDDPVKMYHEIQKLNGDREKAGLSRLLATFDWPYKQKGHPDDSPYWMVNTGDLSLPWNLQLPVDESQSHLRKHLSWAEQSQTVDEVGSTYTIQGFDLNYAGVIIGPSVKYVDGKIVFDPELSENKNAVRNRTLSNGKKAQVSDELLANELNVLLTRGVNGLFIYAVDSDLNSRLHGEMMTKIRMVRNNE
>NZ_CP014924.1|WP_065902283.1|1809592_1809916_+|nucleotide-pyrophosphohydrolase
MEYKVVIDELIAFRNQKNWQKYHTLPGLARALSVESAEVNQLFLWQDSENDDVILQDGKAAQDLKMELADTLTYAYYMCEKLGVEPNDLVHEKLQTNKKRHWKFDED
>NZ_CP014924.1|WP_065902303.1|1826583_1827243_+|N-acetyltransferase
MTNPVTGNIQIRNEHPKDYRSVEELIRTAFWNVYTPGCYEHYLVHIMRAHPDFVTKLDLVLTVDDKIVGSVMFTKAKLIAENGKIKQVLTLGPLAIHPDYQRLGLGKRLINEALERAHKLEFDTVILMGAPSNYVGAGFKSAMRYDVSMGRDQYLTALLVKELVPGVLAGHHWHFESSPVMDVDMNAVDVFDQEFDALPKEWRPSQEEFYIISHSYMQK
>NZ_CP014924.1|WP_065937600.1|1827385_1828816_-|FAD-binding-protein
MFPKKTDYDLVIVGGGLSGLAAAVAAGEKHLTTLVLEKGRTLGGDGNYVEGAMGVDSAMQKEAGITIDKTQLLQDELNYSHYEASAPHLKKLIDASGATIDWLQSLGVSFTKVGPQGKSWPTIHTFEGGGHAAIEKLKAKADEFGIEFVTSVSAQRLMQSNGHISGLVIKNEATGQYRELTAPNVLLATGGYVDNPELVKKRTPFVGCLLTVSDGKSTGDGMQLAWAAGAQHYSMGAIQYGGGAIYDRQTPPFVHMMSQLGAAATQEAILWVNERGERFVNEDVNDNMCHAGSAILTQSRVFSIFDQTAVDHLAKVGLYKIVGNSPVSPDTLDKLPEEIEADLGKHAPYLTKADSIDELASKLGLAKLPATLARYNALVGTGADTDFGKNRDYLTAVADGPFYAVELGVGMACALGGIRVNDNNEVLNDYGYAVPRLFAAGNDAAGMLVGDTYAVTLPGSTAGYAAFSGRNAVANM
>NZ_CP014924.1|WP_065902307.1|1829713_1830253_-|TetR/AcrR-family-transcriptional-regulator
MTAEDHLITAFLDLLAVEDYNKISVSQLMNRVHLTRTYFYQLYSDKSELAREAFFSLIREYLLGISQAITKNGTANERAVQQGMQFISVHRDQMQLLMQVQKGDFNLLTEFQDRIKTIIVAEVSKSRQVSAPVLDYFSDLFAASTITTLNWFLTHDEVSTDEMIRLASTSLSQGVVSIL
>NZ_CP014924.1|WP_065902309.1|1830369_1831845_-|helix-turn-helix-domain-containing-protein
MRINDLIASLGNPTIKFKNPALLTTNFFDADLDISQSCLTLHTINNDTPCYLRLVQDGNTGPDNTLYLDLPYALTTLKDKVQGALQWDYVASQTFESIQSDVTDQLPIQNYLDVFARHLDQSLILFDRHDELVISSTYGSLGRLSTQAVIHRLLPTLADITGSLIFNDTTNTQLAAITIKPGFTFATPLADRKQAAYTFGLLRRIGTVLVHEIETLAAPADKLATNLPAAYFSNTLLDLIHSQTINADTLKDWRLDPKVSAYIIRITFAMPPESLMVTDFLRVLTPLLGDLRYCIENTSLILICSTGQPLNTMKATLATLYQYAQKYDFSITISAPFNTIEQASVAYQQCVSTQAYAVTVPLPDRILFFQDVALLELVDQVKGRVNLTDYVHPDLQYLMAYDDDHHTDYLNTLHFYLYDDLNTKRAAADLHIHPNTLLYRIGKIKTLLNYDFSFGKQNLDYRMGFLILYSQNKVRLPRSRRTPAEDPATTI
>NZ_CP014924.1|WP_083215514.1|1832112_1833915_+|FAD-dependent-oxidoreductase
MKDGSYQAKGQGQDGELTVKVTVTDGTLAQVEVVENHETPGVSSRALTDIPKRIVDHQTYDVDVISGATKTSTGISNAVKSALAQANAGTAFSQHVSEVSASDAPVEQLTADLAIIGAGPAGLAAAVAAGEHGLKTVVFEKNGVAGGTANMGMGPLGIDTDIQRQGFNDISVPEALEEHMTYTHYRVDEDLVQTYFNLSADTIKWLQDMGVQFAGAFKYFKESNATWHVVQPDDGSQPGPGAAADMNKHLKARAEKLGATFYLETPATSITTADGKITGITAQANNGQQYAVTASAVLVATGGFGSSKQMLHDELGLNLNEDFFTFNVPGIEGDGLRMMWQAGANKDTTSETVETIYLLPDNFQYFNSDAALRQPNLLINQRGDRFMNEGDMGNTTYTGNALRLQPGNYGYCVMDQSLLDDYKANGPAIADIVHPASCFDDAEGEIEKAQANNYEGIIVADTLSELAEKLGINETKLQQTIDDYNQLCVQNLDTQFHKPAKFLKPIRGNGCYIVGKYFTGAYSTLGGIRTNKFGEVYADATHAVPGLYSAGQDANTIYGDSYNFTLPGNSMGFAVNSGRMAANGIAAYLNERSSKAAVKV
>NZ_CP014924.1|WP_065902311.1|1833949_1835989_+|FAD-dependent-oxidoreductase
MSEALSTEQPGVIKYPHLFKPVTIRGNVYKNRMIAAPTMFMHASYFIPKMRENIYRMVEQRAAGGFGCVSTGEMPLNFEEARTLFQKRKIDFTKYSGPDFEIAKEYADRIHAKGAIAYMEFSHEGSQAAEAKEPWGPEDMTRDDGVKVKGMDEEMMAKVCNDFYQISRFAKKCGFDGVMLHGGHGFLLQQYISPWTNHRTDEYGGSMENRARFPKRILEACRHGIGEDGILELRFSAEDGVHGGMKINDTVAFCQEIDGMADILHISNGLKWLGNQTKTFSSFLDPHGLNVEYAAKVKAAVKKSYVATIGGFNGPELAEKVIAEGKADFIEFGRQCFADPAMPNKALQGKEDEIRRCIRCFVCYPGFCEHPTDIPLAQKIGPEKAAKIYSPMSMGQCTVNPESGFDFNPDAFPKPKSVHKVLIIGGGVGGLQAAITARQRGHKVVLVEQQDRLGGTVNFTDVDEDKIDLCNAKNVIIKQAQESGAEIRLNTKANADLIAKEAPDDVIIAVGAHSVVPKIDGIEKATQAIDAYAKIDQIERNVVIVGGGLVGCEVGLHLARHGKAVTIVEMKDMMADETFGYYRNALLNEMDHRGMKQILSAKCLAFTDDGVLIEKDGQKQLVKADSMCFSMGMHSNEDEVTELKAASGEADAWVIGDAKHAGKVYDAVKGGYMTAMKII
>NZ_CP014924.1|WP_065937601.1|1836086_1837472_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MTKQIKSPFMVVLGVLVINFLGLFSETALNIALPQIGKSFNVSSGQTQWLILGYTMVIGIVLPLTTLISRWVKAKIILAVASVIFILGSVIAALAPSFTWLFIGRTIQGISTGLFMPLLFAVTLLVYPSDKLGSAMGIIAVVMNFAPAIGPSLSGVIVNYLSWRWIFIIFVPISIIALILILMTVPDVIKQTKPKVDLLSVLYSILGFGLLITAVGMFSNFGFENVGLYVLLIVSIIFVIIYVRRQLRIATPVLNFRIFKSRKYTIAAIIAGLNFAMVMAAMYIIPQMLQSGLRFSVSEAGLILLPAGLVNAFVSLLAGHLYDAFGAKRLVRIGAIMALIGILLLLRVTASSSLWYVIIVDIILMAGSGLLLSPAQSYGLGDLSGTDSNDGSTIINTLQQVFGALSVSIATTFLIIGQHASTSTNAATTYMSGAHMSFLWVTVLMICLTFFAFKIVAEKKD
>NZ_CP014924.1|WP_065902315.1|1837486_1838062_+|NAD(P)H-dependent-oxidoreductase
MAKVQLVGIVGNNAPFSYNRMLLSFMQQHFNDQITLDICEIDDIPLFNESHLAAVPDAVATLSLKIKAADGVIIATPEYDHAIPACLKSTIEWLSVYEHALSTKPVMIVGASLGVQGTARAQDNLRQILNSPGVNGFVMPGFEFLLNCAKDKFDEEGTLTDFSTVKFLRDCVDHFLVFVRENEKAFASENR
>NZ_CP014924.1|WP_065937602.1|1838457_1839279_+|hypothetical-protein
MVGIVALCTTPSVQGQAATISVKDYSASHPMIISHRGSPLKFPEHSFAGYNYAMAHGGHFMEQDIILSKDGQLVDSHDNNLHRTLGHNIDITKSTLKQVDRYKFKNGERLHTLGQLFDHYHQRTNYVIETKKTAQGHYKLEKEIIKTIKAHHEKDNVVLQSFSINSLKYMHKRLPGVPEMALVNGPDSTKLKRIVPKLPRYINIVAFYIPGDTTSNVKLCRKYHKLPAAYVLDSDKQLDNGYKTGLGGLFTDNTAKTEVFYHRIAKKPELLTQ
>NZ_CP014924.1|WP_065902319.1|1839377_1840667_-|cation:dicarboxylase-symporter-family-transporter
METKKKRFRISLSWQIMIGLILGIGLGMVFYKNTTAITAMNNIGTMFIDLIQMIMIPIVISCLTVGIASMGNIKKLGRVGIKTLVYFEVITTIAIILGLIIANVFHPGTFVDIKSLTAGDISSYLKSAKTYNSDGGVWGTIMSIVPTNIFASLSAGDMMPIILFCILFGLGTASLGEKGQIIIDFLNAMSQVMFKVTNWIMKLAPIGVCALIGATIAQMGISALLPLGYFVGLCYLGFILFIVVVLGITARIFKINLLHLLNHIKNEIILTFSTASSEAVMPKLIEKLTDYGASRSIVSLVIPTGYSFNLDGAALYESLAALFLAQAYNINLSITQQITLVLVLMLTSKGTAGVSGACFVVLLATMSTIGVPASGLAFIAGIDRIVDMARAAVNIAGNGLSAVVIAKSEGEFTPQDDKALVGGNVVTGR

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Crispr_ID: NZ_CP014924_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_13

2435552-2435687

Orphan

Consensus_repeat	Method
GCCTTGCGGAACGCGTTACGGCACGGATGCCTAGAAAG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP014924_13

>merge|NZ_CP014924|13|2435552-2435687|CRISPRCasFinder
GCCTTGCGGAACGCGTTACGGCACGGATGCCTAGAAAGTACTAAACTGAAAAAGTCTGGCTCTAACTTTGATGCCAGAGTCCGTTACATGGCCGTCTCGCCTTGCGGAACGCGTTACGGCACGGATGCCTCGAAAG

>NZ_CP014924|13|13|2435552-2435687|CRISPRCasFinder
GCCTTGCGGAACGCGTTACGGCACGGATGCCTAGAAAG	TACTAAACTGAAAAAGTCTGGCTCTAACTTTGATGCCAGAGTCCGTTACATGGCCGTCTC
GCCTTGCGGAACGCGTTACGGCACGGATGCCTCGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_065902809.1\|2436566_2437331_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197321
NZ_CP014924.1\|WP_056987125.1\|2432640_2433351_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP014924.1\|WP_054709822.1\|2427691_2428441_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224561
NZ_CP014924.1\|WP_054711563.1\|2442421_2443393_+\|cell-surface-protein	unknown	unknown	gnl\|CDD\|227193
NZ_CP014924.1\|WP_054709820.1\|2430907_2431381_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NZ_CP014924.1\|WP_054709811.1\|2434485_2434965_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
NZ_CP014924.1\|WP_065902808.1\|2427367_2427604_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
NZ_CP014924.1\|WP_054709808.1\|2434954_2435452_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP014924.1\|WP_056987122.1\|2441573_2442425_+\|TIGR00159-family-protein	unknown	unknown	gnl\|CDD\|224539
NZ_CP014924.1\|WP_065902815.1\|2443418_2444774_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_CP014924.1\|WP_169790384.1\|2447237_2447381_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_056987126.1\|2428459_2430880_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP014924.1\|WP_065902811.1\|2437477_2438386_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553
NZ_CP014924.1\|WP_054711555.1\|2435992_2436526_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
NZ_CP014924.1\|WP_065937630.1\|2438406_2440527_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP014924.1\|WP_054709817.1\|2431935_2432523_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227231
NZ_CP014924.1\|WP_056987124.1\|2433408_2434398_+\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|236609
NZ_CP014924.1\|WP_065937629.1\|2425735_2427274_+\|ClC-family-H(+)/Cl(-)-exchange-transporter	unknown	unknown	gnl\|CDD\|238504
NZ_CP014924.1\|WP_056987121.1\|2444992_2446810_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP014924.1\|WP_054711561.1\|2440717_2441398_-\|DUF1361-domain-containing-protein	unknown	unknown	gnl\|CDD\|369208

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_065902809.1\|2436566_2437331_-\|exodeoxyribonuclease-III	gnl\|CDD\|197321	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases. This subfamily includes human Ape1 (also known as Apex, Hap1, or Ref-1) and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Ape1 and Ape2 in humans. Ape1 is found in this subfamily, it exhibits strong AP-endonuclease activity but shows weak 3'-5' exonuclease and 3'-phosphodiesterase activities. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes exonuclease III (ExoIII) and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	1.36079e-150
NZ_CP014924.1\|WP_056987125.1\|2432640_2433351_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	1.19361e-143
NZ_CP014924.1\|WP_054709822.1\|2427691_2428441_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	4.18793e-49
NZ_CP014924.1\|WP_054711563.1\|2442421_2443393_+\|cell-surface-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	1.28727e-63
NZ_CP014924.1\|WP_054709820.1\|2430907_2431381_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	1.94731e-86
NZ_CP014924.1\|WP_054709811.1\|2434485_2434965_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	1.39281e-63
NZ_CP014924.1\|WP_065902808.1\|2427367_2427604_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	3.18536e-18
NZ_CP014924.1\|WP_054709808.1\|2434954_2435452_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.27423e-16
NZ_CP014924.1\|WP_056987122.1\|2441573_2442425_+\|TIGR00159-family-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	3.02709e-101
NZ_CP014924.1\|WP_065902815.1\|2443418_2444774_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP014924.1\|WP_056987126.1\|2428459_2430880_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP014924.1\|WP_065902811.1\|2437477_2438386_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	3.76504e-172
NZ_CP014924.1\|WP_054711555.1\|2435992_2436526_-\|3'-5'-exonuclease	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	2.00788e-89
NZ_CP014924.1\|WP_065937630.1\|2438406_2440527_+\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	9.74794e-79
NZ_CP014924.1\|WP_054709817.1\|2431935_2432523_-\|hypothetical-protein	gnl\|CDD\|227231	COG4894, COG4894, Uncharacterized conserved protein [Function unknown].	1.35251e-13
NZ_CP014924.1\|WP_056987124.1\|2433408_2434398_+\|phosphate-acetyltransferase	gnl\|CDD\|236609	PRK09653, eutD, phosphotransacetylase.	0
NZ_CP014924.1\|WP_065937629.1\|2425735_2427274_+\|ClC-family-H(+)/Cl(-)-exchange-transporter	gnl\|CDD\|238504	cd01031, EriC, ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.	1.49604e-163
NZ_CP014924.1\|WP_056987121.1\|2444992_2446810_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP014924.1\|WP_054711561.1\|2440717_2441398_-\|DUF1361-domain-containing-protein	gnl\|CDD\|369208	pfam07099, DUF1361, Protein of unknown function (DUF1361). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although some members are annotated as being putative integral membrane proteins.	3.09733e-33

>NZ_CP014924.1|WP_054709808.1|2434954_2435452_+|GNAT-family-N-acetyltransferase
MTSEDLDYRRVQPADAQALLALLQQLSQETTTFTVPTPLPSVSQEVKEIEQINAGKDHVVIVAATGEQLVGVVTVMPTDEQAAGEIGVAVLKKYWRQGIGYELMLSGLDWGALESSYSEISLTVQKQNTGAIAMYEKIGFATLSTSHVENSAGERVEAFEMAIGV
>NZ_CP014924.1|WP_054709811.1|2434485_2434965_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MIDRIVTSPEETMAIGQQLAPFLQPKDIILLDGDLGAGKTTFTKGLALGLGIKRNVKSPTFTIIREYQEGRIPLYHMDVYRLEEGGGDELGLDEYFNGDGVSVVEWSQFVASELPDDYLRIAFHREDDAGEAQRRITFMPKGNRFEKIVDELEAQLNDK
>NZ_CP014924.1|WP_056987124.1|2433408_2434398_+|phosphate-acetyltransferase
MELFDSLKQKISGKNKVIVFPEGNDIRIIGAASRLSHDGLVKPILLGDPDEINKLASEKGFDLTGIKITNPADAPEAEKKELQDALVERRKGKNTPEQVAEMLKDPNYWGTMLVYLDQADGMVSGAVHATGDTVRPALQIIKTKPGTKRIIGAFIMQKDEERYVFADCGININPDEEGLAEIAVESAKLAKLFDIDPKIALLSFSTKGSAKDDVVTKVANATKLAQEKAPDLPIDGELQFDAAFVPEVGERKAPGSKVAGHANVFIFPNLEAGNIAYKIAQRLGGFEAYGPILQGLNKPVSDLSRGANEQDVYQIAIITVIQSLANESK
>NZ_CP014924.1|WP_056987125.1|2432640_2433351_+|uracil-DNA-glycosylase
MKPFIHNDWWAELEPEFEKSYYQDLHAFLIHEYETQLIHPDMYHIYEAFEWTPFSQVKVVILGQDPYHEPNQAHGLSFSVLPGVRIPPSLQNIYKELQSDLGIQPVNHGYLEKWAKQGVLLLNSVLTVRNGQAFSHKGKGWEQLTDAAIHKLSERSTPVVFILWGRAAQNKINLIDTDANIVIQSAHPSPLSAHRGFFGSKPFSKTNTALEALGETPIDWQLPEHAEVDDDNHQRA
>NZ_CP014924.1|WP_054709817.1|2431935_2432523_-|hypothetical-protein
MRTLYVRKDSLSAKGATVVRDEDHRSIYLLIGRWGRRPDTLSLYQISGTLLAELRQTNLGLLPQFDIYYHNQKVGRIAKRFGFFNEFIYITNLRWIVVGNFLTGHYKIYHGTKTIMTADADDDQMHITCSQKSYEPVCLCIAATLDHWANRRTKFKLPGQAWHVSFNVPNDMHGNRAWHYADKSVEESGLRAEHK
>NZ_CP014924.1|WP_054709820.1|2430907_2431381_+|SsrA-binding-protein-SmpB
MAKKKKTPNDKNVMAQNKKARHDYAILDTYEAGMVLTGTEIKSIRARRITLQDGFAQIRNGEAWLMNVHIDEYAEGNRFNHDPLRNRKLLLHKKEIKKLQDAVSDKGITLIPLRIYLKNGVAKVLIGVAKGKHEYDKRETLKRRDQQRQIDRVMKRY
>NZ_CP014924.1|WP_056987126.1|2428459_2430880_+|ribonuclease-R
MEDNNLKQQIEDLLRANPTKKFRVEDISDALHYHGSAAFKLIVQELARLEREKVAAVTGESEFQLDPKARVLTGIFHSNDKGFGFVAYDDDLPDAYIAPDNTMSALNGDEVEMEIVRPADPRSDRGPEGKVTGIATHNYTQVVGEFMQTDDDKGYYGQVRLTDKKLKRYSFYVVGTGLKPTPGEVVTAEITGFPSSEHPLAMVGIAKKIIGSVDDPGIDILSIVYAHDIPSEFPEDVLEEADAIPDHVTEEEMKGREDVTDQNLVTIDGESSKDLDDAVTVWKMDNGNYHLGVHIADVSHYVKEGTLLDQEAYKRGTSVYLTDRVIPMLPRRLSNGICSLNEGVLRLCMSCEMEIDPEGNVVNHRIHPSVMKSKARMTYTNVNKIIEAHDEATRDRYGELTPMFDEMAELHKILYKSRKRRGAIDFDDTEAEIIVDDKGHAIDIKLRVRGVAERMIESFMLAANETVAEHYNKAKAPFIYRVHETPDGERVKSFFEFLTAFGINVKGDPDHLRPKMLQNVLKGVAGKPEEAVVSVMMLRSLKQAKYTDQSLGHFGLAAKYYTHFTSPIRRYPDTMVHRLIHFYEKNGINAESKARYANLLEEVGVHSSEMERRAIDAERDTDAMKKAEYMADHIGEEFDATVSSVMKFGMFIELPNTVEGLIHISRMQDDYYEYVEKFLALVGRTTKRTYRIGQPVRVKVVNVDKEQSQIDFDLVNPEAAPTSDLLPKRESRSRGGRNGGSFGHGNNRNSNNNNRNHGNGNRGSNTRGGNNHGGNRNGNGGNNGNQNHSNGGNHSNNNRNQPRKHN
>NZ_CP014924.1|WP_054709822.1|2427691_2428441_+|alpha/beta-fold-hydrolase
MIQMPKPFFFENDGPKAIVLLHAYASSSNDVRMLGRHLQGEGYTVLAPMFTGHATGEPKDILTAGSPTAWWQDTQQAIQQLRDKGCQEISVFGLSLGGIFAMKALETDPNLIGGGSFSSPVVRSRGSNLIPEFIKLAAATYHYTDLSQAQVDENLAWLKANVTTQLAQIDTFAQTVTDELPTIHKAVFVAQGGADELIDANCAYDLKNALTNAQVDFHYYDQAGHVITVNSARHELMADLDTYLTTIYN
>NZ_CP014924.1|WP_065902808.1|2427367_2427604_+|preprotein-translocase-subunit-SecG
MYNLLLTGLMIDSVLIIIAVLMQPSKQDDAMSALSGGSPDLFQQQKARGFEAFMQRVTVVLGVIFFVLALALAYLSSH
>NZ_CP014924.1|WP_065937629.1|2425735_2427274_+|ClC-family-H(+)/Cl(-)-exchange-transporter
MDAKKGKERDYSRLTAVGRGLVIGLFVGVVISLFRLLIMKGLLFVQWFFGQAHQHVWLLGVWILISLVLTIVVGRLIKQTPEIKGSGIPQVEGQLMGELDYHWWPVLWKKFVGGVLSIGSGLFLGREGPSIQLGATVGQGVAAVTHNTGSQRRLMIASGASAGLSAAFNAPIASTLFILEEVYHNFSTLIWLSALASALTANFVSTAVFGLTPVLHINYFASLPLSQYGLLLILGLVLGLLGRLYQSVVLRVGDWYHKLTWLPDQYYSIIALLLLMPVAWYLPSVLGGGNGLIVSLGMHTPSALILLGLFVLRFAYSMIAYGTGLPGGIFLPILTLGAVFGAFFGKLMVLWQLTRPAYVPIFIIAAMAGYFAGISKAPFTAILLITEMVGSLHHLMPLAVVSLIAYMTVDLLNGAPVYAAMLEKMQTPAQRHLTDEVGHMEIPVMANSVLDGKQVREVTWPQGALLTEIHRGERHIVPRGDTLIRVGDLLIVHSPLDQNESVRQELLKMNGS
>NZ_CP014924.1|WP_054711555.1|2435992_2436526_-|3'-5'-exonuclease
MNFVAMDFETASGKRYSACSLALTIVRNNQVEDEFYTLINPQTPFFWRNIQIHGIHEEDVADAPTFAEVWPHIKSFFTPDQLVIAHNAQFDNGVLKQTLNHHGIIAPRYLTLDTVKTSRKFYPSLPNHKLNTVCDSLGIDLEHHHNALDDSLACANILLYESQAFGQQAIKPFVSAL
>NZ_CP014924.1|WP_065902809.1|2436566_2437331_-|exodeoxyribonuclease-III
MKFISWNVNGLRAVVKKDFTTTFTDLDADFFCIQETKMQAGQLDLELPGYEQYYNYAERKGYSGTAIFTKHHPLAVTYDIGVPEYDHEGRVITLEYPDFYLVTCYTPNSGSGLKRLDFRMGWEDVFQDYLDKLNISKPVILCGDLNVAHEEIDLKNPKTNHKNAGFTDDEREKFTALLGRGYTDTFRYFNPDATEQYSWWSYRFHARDNNAGWRIDYFVTSNSIQKNLETAEIRNDVFGSDHCPVELVTTGLNV
>NZ_CP014924.1|WP_065902811.1|2437477_2438386_+|UDP-N-acetylmuramate-dehydrogenase
MTVNFITQFPNVTILTDEPLSKYTNTKTGGPADLLAFPASVDEVQALMTVANANDVPVTVIGNASNLIVRDGGIRGLVMILTRMATIKVSGHQVIADAGASMIEVTKRAQAASLSGLEFAAGIPGSVGGAIFMNAGAYGGETSDVADSVLVLTRQGEIKTITRDDLNFGYRHSRVQDKNDVVLSATYLLQPGDGQEIQAKMDDLNARRAARQPLDLPSCGSVFKRPTGYFAGKLIHDAGLQGHQIGGAQVSMKHAGFIVNVDHATATDYLNVIHHVQTVVFEKFNVHLENEVRIIGESVKED
>NZ_CP014924.1|WP_065937630.1|2438406_2440527_+|sodium:proton-antiporter
MPIVEAVILLVVLVLASNIISHYLTFIPVSLIQIGLGLVMALFWQIEIPLDTDWFLLLFIAPLLFNDGRRFPKRELWKLRGPIFANAIFLVFLTTLLGGFLIYLMVPKMPLTVGFAVAAILSPTDPVAVQSIAKRVHLPENILHLVSGESLINDASGLIAFKYAVAATVTGVFSLSQAAGDFFYISIVGLIVGAVLMLLIQFMRDVLRRQGINDVIFNTVLQIMTPFVIYFIAEDVFHASGVIAAVTAGIISHTRNNHLIEDLPELHLVTEKTWDIIVYLLNGIVFVILGDELPTATSHIIKNAQFKTWQAVAYAFGAWVVLLVIRVVWIYIYQLVAQWRKKTEKASFRISLLAGLSGVRGTVTMAGVLSLPLVTASGAAFPQRSLALFISAGVIIISLVVAVITLPLVSPDDAQPLQTRASLSDMDADDLVDTDEDEDSDVPKAPRLTDDQSRIYIMRLAINAIEEHRRQENQRAAYDLILDYQFMIRRMEAKSKDDGAIQRVANDEVALRRVCLTGERQAIERLFEHHQISKTGYQLAMKRLARSQRRLNQADQASLTLIIHSWWLWLKHTVHRIIQLARHQRNPKVENERQLIDRESAKAAIKSLSKYLGREDVATAELDKQAIYHLVVFYRNRIERAKSDDSFSREAYATQVNKLRIVGLGAQRSGVQTLLEAGNITWQMAGRLRQYINYSENVLMMGEDEE
>NZ_CP014924.1|WP_054711561.1|2440717_2441398_-|DUF1361-domain-containing-protein
MRTQAKWQIRIFFVLWLLFLWAFVKAPFTFLILNTFLGYIPIEISFHIKTTFPKHGLFFWALVILWLLFYPNAPYLLTDLFHLSLLNPYTYDGLLRASLHIWIYFTVELISVLFCVFLGFWSLNYVAETITERYFKRARWLEIILVLILTFLSSVGIYAGRFLRIHTIYLFISPDLIMHRLLGMWTEPMLEFVGLMTVIQLLAYWLSHLVYHQHVGVSQHDDGKSG
>NZ_CP014924.1|WP_056987122.1|2441573_2442425_+|TIGR00159-family-protein
MNLDWSNLLTWHTIVNLLDILVVWFVFYELIMLLRGTKAIQLLRGIIFIVLIKIVSVYVGFTTVSWLMDQVINWGVIALIIIFQPEIRRGLEHIGRGSVFVRNRQMNEAENKMIEALDKAIQYMSKRRIGALITIQMDTGLEDYIETGIELNAEITGELLINIFIPNTPLHDGAVIIRDNKIAVAAAYLPLSESNLIPKELGTRHRAAVGISEVTDALTVVISEETGEVSITKNNELLRNMDQNDYLKFFRNELIKDQEPEKRNAYTAVLDWIDERFRGGNQK
>NZ_CP014924.1|WP_054711563.1|2442421_2443393_+|cell-surface-protein
MKAFLNSRWLYRLISLFLAICLFLYVNSTKTTTSQSTDSSNDSTTLTTNEHKTISVQLRLNVNSDKYFVTGYPEKVKVHLSGPAALVTATSNTQNFRVMANLTKLSTGEHTVALQQEGLNRDLTYRIDPAKIKVNIQKRQTVTFPVTVNYDKTRIADNYEAGKATSDVTSVKATGAESEIDRINKVVAQVDLKQNAKSTVNSQAVIEALDKQGRTVNVILTPSTTQVNLPITSKQNSKKVPISFKVKNGSSDYTYSIKSSTSSVRVFGSKSKLADISSFEADIDVSDIKKSTTKTVSLDPDANGVTGVNPTSVKVSITTKQAD
>NZ_CP014924.1|WP_065902815.1|2443418_2444774_+|phosphoglucosamine-mutase
MKYFGTDGVRGIANQELTPELAFRLGRAGGYVLTEHAEGKQQAQVLVAHDTRISGQMLEESLVAGLLSVGIEVLRLGVISTPAVAYLVRTQGADAGVMITASHNPVADNGIKFFGADGYKLSDSLEEEIESLLDKETDTLPRPAAEGLGTVEDYQEGSQKYIQFLEQTISDDLSGMHIAVDSANGATSNLVSRLYADLAADFDTIATTPNGLNINDQVGSTHPEQLQKFVVEKGAQIGLAFDGDGDRCIAVDENGDIVNGDKIMYICGKYMSEHGRLKKDTIVTTVMSNLGMYKAMEAHGMTSVKTQVGDRYVVEKMVADGYNLGGEQSGHIVFLDFNTTGDGMLTSLQLLHILKETGKPLSELAADAQDYPQKLVNVKVADKKAALNNPEIKGIIDTVEKEMAGDGRVLVRPSGTEPLLRVMAEAPTKEAVAGYVNRIAAVVKKEVGVEE
>NZ_CP014924.1|WP_056987121.1|2444992_2446810_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGVTGSDNAVKILLEGLQKLEYRGYDSAGIYVNDQDGQDYLVKEKGRIADLKREVGPEVHGSTGIGHTRWATHGGVSVANAHPQVSQDDRFYLVHNGVIDNFQEIRSDYLSDVSFTSQTDTEVVVQLIDKFAVEDKLNAHDAFVKALTVLKGSSYAFLLMDREDPETLYVAKNKSPLLVGVGDGFNVVCSDASAMLRETHDFLELLDGEVVTIKPNEVKIEDKDGKPVERKTFHVDMDASETDKGTYPFYMLKEIDEQPNVMRKLAQVYLSETGEPVVNEKLLNSMKQADRIYIVGAGTSYHAGLVGARLFENLTQTPTEVHISSEFAYEQPILSKKPFFIFLSQSGETADSREVLVNVNAAGYESLTITNVQNSTLSREATYTLLLHAGPEIAVASTKAYTAQIAVEAILAKALGESDNQIVAQRFNIRQQLGLVATGIQAIVDAKSKLEDMAKKYFLNTPNAFYIGRSLDWSVSLEAALKLKEISYVQAEGFASGELKHGTIALIEDGTPVIGIITQAKTAGLTRSNLQETMARGAQIITITTESLAKPDDDIILPDVDELLTPLLSVVPTQLLAYYTSLNKGLDVDKPRNLAKSVTVE
>NZ_CP014924.1|WP_169790384.1|2447237_2447381_+|hypothetical-protein
MKYTKKRSTSKDAASKREATWEKFKDQQNDLAANRRGIRRKPSRRPK

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Crispr_ID: NZ_CP014924_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_14

2685070-2685199

Orphan

Consensus_repeat	Method
TAGAGAGCAGGGGTGCTGGATGAAATGTCTGGGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_14

>merge|NZ_CP014924|14|2685070-2685199|CRISPRCasFinder
TAGAGAGCAGGGGTGCTGGATGAAATGTCTGGGTCTGAAATCCGTGCTGGGGCGCGCTTGTGTGCAACGTTTTGCCCTTCTGTAGCCCGATTCGGTAGAGAGCAGGGGTGCTGAATGAAATGTCTGGGTC

>NZ_CP014924|14|14|2685070-2685199|CRISPRCasFinder
TAGAGAGCAGGGGTGCTGGATGAAATGTCTGGGTC	TGAAATCCGTGCTGGGGCGCGCTTGTGTGCAACGTTTTGCCCTTCTGTAGCCCGATTCGG
TAGAGAGCAGGGGTGCTGAATGAAATGTCTGGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_054707772.1\|2692945_2693545_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP014924.1\|WP_065902987.1\|2687502_2688393_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_054712567.1\|2693931_2694855_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP014924.1\|WP_065937645.1\|2688593_2689781_+\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP014924.1\|WP_054707807.1\|2676650_2677223_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|367574
NZ_CP014924.1\|WP_065937644.1\|2685658_2687440_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP014924.1\|WP_054707764.1\|2696502_2697885_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP014924.1\|WP_156652916.1\|2683024_2684035_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
NZ_CP014924.1\|WP_191982246.1\|2680814_2683010_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
NZ_CP014924.1\|WP_056987888.1\|2680282_2680768_+\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
NZ_CP014924.1\|WP_065902989.1\|2689996_2691313_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP014924.1\|WP_054707784.1\|2684629_2684899_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP014924.1\|WP_056987890.1\|2676359_2676650_+\|YlbG-family-protein	unknown	unknown	gnl\|CDD\|378299
NZ_CP014924.1\|WP_054707804.1\|2677215_2677686_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_CP014924.1\|WP_065902990.1\|2691497_2692751_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP014924.1\|WP_054707766.1\|2695198_2696503_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP014924.1\|WP_065902981.1\|2677699_2678749_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|226011
NZ_CP014924.1\|WP_054707769.1\|2693541_2693847_+\|nucleoside-triphosphate-pyrophosphohydrolase-family-protein	unknown	unknown	gnl\|CDD\|212148
NZ_CP014924.1\|WP_054707787.1\|2684099_2684363_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP014924.1\|WP_056987889.1\|2679535_2680180_+\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|213597

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_054707772.1\|2692945_2693545_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	3.32535e-108
NZ_CP014924.1\|WP_054712567.1\|2693931_2694855_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.45666e-73
NZ_CP014924.1\|WP_065937645.1\|2688593_2689781_+\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NZ_CP014924.1\|WP_054707807.1\|2676650_2677223_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|367574	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.	3.1035e-69
NZ_CP014924.1\|WP_065937644.1\|2685658_2687440_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP014924.1\|WP_054707764.1\|2696502_2697885_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP014924.1\|WP_156652916.1\|2683024_2684035_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	6.04145e-89
NZ_CP014924.1\|WP_191982246.1\|2680814_2683010_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.7528e-64
NZ_CP014924.1\|WP_056987888.1\|2680282_2680768_+\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	1.57716e-98
NZ_CP014924.1\|WP_065902989.1\|2689996_2691313_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	4.31232e-159
NZ_CP014924.1\|WP_054707784.1\|2684629_2684899_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	4.7469e-50
NZ_CP014924.1\|WP_056987890.1\|2676359_2676650_+\|YlbG-family-protein	gnl\|CDD\|378299	pfam09902, DUF2129, Uncharacterized protein conserved in bacteria (DUF2129). This domain, found in various hypothetical prokaryotic proteins, has no known function. Structural modelling suggests this domain may bind nucleic acids.	5.73128e-25
NZ_CP014924.1\|WP_054707804.1\|2677215_2677686_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	2.50174e-90
NZ_CP014924.1\|WP_065902990.1\|2691497_2692751_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP014924.1\|WP_054707766.1\|2695198_2696503_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP014924.1\|WP_065902981.1\|2677699_2678749_+\|PDZ-domain-containing-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	1.51476e-102
NZ_CP014924.1\|WP_054707769.1\|2693541_2693847_+\|nucleoside-triphosphate-pyrophosphohydrolase-family-protein	gnl\|CDD\|212148	cd11541, NTP-PPase_u4, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from bacteria and archaea. This family corresponds to a group of uncharacterized hypothetical proteins from bacteria, showing a high sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, members in this family consist of a single MazG-like domain that contains a well conserved divalent ion-binding motif EXX[E/D].	8.30245e-29
NZ_CP014924.1\|WP_054707787.1\|2684099_2684363_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	7.02478e-19
NZ_CP014924.1\|WP_056987889.1\|2679535_2680180_+\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|213597	TIGR01259, ComE_operon_protein_1, comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation. [Cellular processes, DNA transformation].	2.6963e-32

>NZ_CP014924.1|WP_054707784.1|2684629_2684899_+|30S-ribosomal-protein-S15
MAISQEKKNEIIKQYARHDGDTGSAEVQIAVLTADINSINDHMRAHKKDFHSQRGLMKKIGHRRNLLAYLRKSDVQRYRDLIQSLGLRR
>NZ_CP014924.1|WP_054707787.1|2684099_2684363_-|30S-ribosomal-protein-S20
MPIIKSAIERAKTNVKANKRNSSQLSTMRTTVKKFETAVTAHDEKAAALYVAASSAVDKAASKGLIKRNKAARDKSRMAARLAKANA
>NZ_CP014924.1|WP_156652916.1|2683024_2684035_+|DNA-polymerase-III-subunit-delta
MKSLHNHTPVSVYLITGDQAYLVNRLKKAFTDLIPEEERTMNLASYDMESTPLAQALDDAMSAPFFGERRLVFVEHAYFLTTDPHKGIKVDHDIDGMLTYLEHPEPTTVIVFIATTGKLDSRKKIVKTLKKVADVVSLEAIGETQIKQLVGNDLQNNGFKIQPDAFNQLLQRTGSDLSLIMNELPKLKMASYESKEITAEVVQELVTKSLDQNVFDLVNDVMAKHIDAALTLYRQLILTKEEPLKINTVLVSQFRLLIQTKILVKNGYSQGSIASTLKVHPYRVKLAMQSTRRLKLDDLKRAYLGLIAIERSLKSTSQDPETLFELFMLKFLNEVA
>NZ_CP014924.1|WP_191982246.1|2680814_2683010_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MFGDFWVSAGLAGIWLIRIVCLKDRSILIWAIVTSLVFGCWFVFQRDQRRLQTLPEMSNTTVKLQVQPDDVLVGPDSVQLKGRLPTGQQVTGQYYAAEGERPAPQWQIKRASTLTVAGDVMQFEPATNVNEFDYGAYQRQNGVLNRVKIAQLLAVTPATGGHVWQRWLNACHTLRARLIIETKKLPPLLALYVQGLFLGYRADNFYDNLAAVTDLGLIHLFSISGFHVVWLTAVMAFVLKRLRCSQAAVNVIILLSLPSYFVLAGAAPSLLRAILVSMLALGASLMHWKVTPLTLWGLSLMLALLWYPALLMQLGGQLSYALAFALIFVEGRSTLMKTVLLNMVSLPFVLYHVYQWHVWSLMANLLILPVFSWLIFPVTLIGGLLGLKFPVVAQLCTHLLGWFTQGLDTIAHFPGMITFGKPHIVLVVLLVGLTLVLLTRHRQRTVIIALAVTYAASFLMIHYPVKGEVTFFDIGQGDSFMIREPYGKQITMIDTGGDVFFGGHQVKKRSRALRLNINYMQSMGIHRIDALCLSHQDADHVGFVGDVLKTMAVKRLYIPWGMAANPQFMQRIRPNLNQTQLISVRAGQTIPGTHLKVVHPFTPGLGGNEDSMVLTGQYGGLQFMFTGDLGQDGEKKIIAHYPQLRTDVLKLGHHGSKTSSAPEFIQALQPKVGIISAGRHNRYGHPNQETLATLAQQHVPYFNTQTNGMIRYRFRAHHPGYWETVMKEDAT
>NZ_CP014924.1|WP_056987888.1|2680282_2680768_+|ComE-operon-protein-2
MTKKRIPWDQYFMMQSVLLASRSTCNRLSVGATIVRDKRIIAGGYNGSVSGDVHCIDEGCYLVDGHCVRTIHAEMNAILQCAKFGEQTDGAEIYVTDFPCLQCTKMLLQAGIKKISYLRNYHNDPYAMELIKMKNVELNQVTLDEEMIKRASFETYLTDHQ
>NZ_CP014924.1|WP_056987889.1|2679535_2680180_+|helix-hairpin-helix-domain-containing-protein
MDRLKELLGTMGREVWIIAGIAVATIGIVFLMVHQAPQEASTQPESAVMSDSMAVASSGGSDSTVASSQSMTMYVDIKGAVKNPGLKKVTGDMRVIDAVQLAGGFASNADQKQVNLAQRLTDQQVVFIPKHGETAPPVATGGGGAGASSEAPQVNLNSADLEQLQQLDGVGEKKAQKIIDYRTAKGQFKTIEDIKNVSGFGDKTFERLKPQLAV
>NZ_CP014924.1|WP_065902981.1|2677699_2678749_+|PDZ-domain-containing-protein
MKNFLKKRATKVTLGVIVGVLVLVGLFWPLPYYIETPGSGTNLKSFVTIKSHPDKRPGEYMIMTVQLARARPITYALAKVLPYHEIDTEKSVTGGQSGATYMRMENFYMQSAINEAKAVAVKAAGDKVTKDYLGIYVMEVQKNSKFKGELKVGDTITKVNGRHFESAFGFQNYIRKQKVGKQLAVTYERDGVKHTVTEPLIKLSSGQPGIGIILTDNVKIKTSPKVSVDPGQIGGPSGGLMMSLQIYTQLTNTNLRHGRKIAGTGTINPDGSVGEIGGIDKKIVAAKKAGATIFFAPYIKPTKAVLKLEEHHETNYQLAKKTAKKVAPNMKVVPVTSFKQVVRYLETHK
>NZ_CP014924.1|WP_054707804.1|2677215_2677686_+|pantetheine-phosphate-adenylyltransferase
MTKAVFPGSFDPLTMGHLNLIQRASGLFDELIVTVGTNISKRSLFTPDERVALIQESVADLSNVRVQMESGLTVDFVKSVNASVILRGLRNSKDYDYEAGIAQMNHYLDNGIETLFLLTDAKYAFISSSLLKEVLHFGGDISELVPPAVVAALAKK
>NZ_CP014924.1|WP_054707807.1|2676650_2677223_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRVISGEYGGRRLRAVPGMKTRPTTDKVKEAIFNIIGPYFDGGTSLDLFAGSGGLSIEGVSRGIDHAVLIDRQGAAIKTIHQNIEVTKEPDKFSVYKRDAEKMLPQLKSQGLAFNLVYFDPPYREQKIMKEIQILQDLALLAPECCIMCETNQEAELPEMVGAAKLVEQKSYGITKVTIYEMPEEGETDD
>NZ_CP014924.1|WP_056987890.1|2676359_2676650_+|YlbG-family-protein
MPAIQEREDLVVYVSNLRQVRQLKRYGHVAYVSKRMRYAVIYVNTDQVSDVTAQLKELRFVKRIITSPHKALIDLLGLSGNPVAKDEQAKAEEDDD
>NZ_CP014924.1|WP_065937644.1|2685658_2687440_+|ribonuclease-J
MEEATVKIMPLGGVRENGKNMYVVDINDGIYVLDCGLKYPENELLGIDIVIPDYNYLRENKDRIVGVFLTHGHADAIGALPYFLSEFNVPVFGSEMTIELAKLNVKDDPNVKDFDDFHVVDERTEIDFGDVTVSFFKTTHSIPESMGIVLGTASGNIVYTGDFKFDQTASKDYQTDYARLAEIGKQGVLALLSDSANAENPNETASERDIAEMVDETLNYHNGRVIVASVGSNIMRLQQVFNAAARNDRKVLLTGRDIEKIVDTALRLNKLILPVDDLLIKQDDLEKLAPEQIAIIQTGRMGEPIKALQRMANGQEKGLSINQGDLVFITTTPSHAMETTVAKTRDMIYRAGGEVKAISDELNSSGHASKNDLQLMINLLHPTYLIPVQGEYRLLSAHRHAAEEVGMAEDHIFLTAKGDQLVYDKGEMVLSGSVEVGNTMIDGIGVGDIGNIVLRDRKVLSEDGIFVAVVTIDHKKKQIIGEPKITSRGFVYVKANKDLMHESAEIIKNVVQANLDNKEYDWTHLKQDVREKLNHYLFDQTRRHPVILPVIMEVDPRRHKPKSNKGKKKKAADNKPAADKPAKKGPSKETTND
>NZ_CP014924.1|WP_065902987.1|2687502_2688393_+|hypothetical-protein
MANERVLKTANDAFKAEDWATAARLYDQLYQENKTVKLNHLVVKCHYELAQYEIALAVMREQEQSYFEDHYHMILWAKIMLANHLNIMVRIAMVTLPDVPQEMTLLVTEYEAAVRQRPDFKQRYQTFYQLSAGDVTEQRHQFEMGKALPIAEWQTAVTHLLTDPFVKPIVRVSLLEMLTKLKVTDPVSYVWLDGTATDVVPSQLSPLDDLPVVQTTQDALQTLLADDDPITQQLYAESLRVQLSLLYPFVNRAVTAPQKWVCVLTGQISDGDDDPTTQQMIDWQGRLGEMMQEMTS
>NZ_CP014924.1|WP_065937645.1|2688593_2689781_+|elongation-factor-Tu
MAKETYERTKPHVNIGTIGHIDHGKTTLTAAITKVLAAKGLAKAEDYADIDKAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVEYIVVFLNKTDLVDDDELIDLVEMEVRELLSEYDYPGDDIPVIRGAALKALEGDPEQEKVILHLMDVVDEYIPTPVRDNDKPFLMPVEDVFTITGRGTVASGRIDRGTIKVGDEVEIVGLKEEILKSTVTGLEMFRKTLEFGEAGDNVGVLLRGINREQVVRGQVLAAPGSIQTHKKFKGEVYILSKEEGGRHTPFFSNYRPQFYFHTTDITGVIELPDGVEMVMPGDNVTFEVDLIAPAAIEKGTKFTVREGGHTVGAGVVSDIMD
>NZ_CP014924.1|WP_065902989.1|2689996_2691313_+|trigger-factor
MSAKWEKKETNKGELTFEIGADQIKKGLDQAFAKTKKNLAVPGFRKGKVPRQIFNQMYGEEALYQDALNIVLPDAYAAAIEEVGIEPVDQPEVNVESMEKGQAWVLKAVVTVKPDVKLGEYKDLSVTKQNTRVYQKDIDAELERRQQQQAELVLKEDQPAAKGDTVVIDFDGYVDGKQFDGGKADNYSLELGSNSFIPGFEDQLVGHKAGEDVEVKVTFPDDYQAEDLQGKEATFKTTIHEVKAKELPALDDEFAKDVDEEVDSLDELKAKIKDELKEQKTNAAQEAIEDEAIREAVDNATIEDVPAAMVEDDIHRQMDQYLANMQQQGIDPKTYFQLTGTTEDDLHKQFASDAERRVKTNLVLEAIVEAEKIEPSDDEINKEVTDLAGQYGMEESAVRSALSDDMLKHDIAVQDAVALVRDSAKQDKSKKDEKEDEK
>NZ_CP014924.1|WP_065902990.1|2691497_2692751_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MFENTDVNGPVNCSFCGKSQDQVMKIVAGPGVYICNECIDLCKEIIDEEFNETAEETVFDVPTPQQIVDSLNQYVIGQNEAKKTLSVAVYNHYKRVNEMATSEGAEGPELQKSNITMIGPTGSGKTYLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQNADYDVERAEKGIIYIDEIDKIAKKAENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQIDTTNILFIVGGAFDGIETIVKNRLGDKTIGFGTDSTHQPINGSESLMQRVVPEDMLEFGLIPEFIGRLPILTALEKLSEEDLVRILTEPKNALVKQYQKLLSLDGVQLEFDAAGLREMAKLALKRNTGARGLRSIIEDVMRDIMFELPSRDDVEKVVVTGETVKDHEEPQLILKDQKAS
>NZ_CP014924.1|WP_054707772.1|2692945_2693545_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MEVHDVELVMSAVDPKQYPTTGDPEIALVGRSNVGKSSLTNVLINRNSYAHTSSQPGKTQTLNFYHVESQMYFVDVPGYGYAKASRTDREKWGQMIETYLTQREQLRGVVSLVDGRHEPTKDDQQMYTWLAYYDIPTLVVATKLDKISRGKWNKQLSMIKKTLQLKPEDALLPFSAQTKMGKDAVWDWIETQAFGGKLG
>NZ_CP014924.1|WP_054707769.1|2693541_2693847_+|nucleoside-triphosphate-pyrophosphohydrolase-family-protein
MNFNDYQQAANRTLYGSEQVLTNCALGLSSETGEVVDLVKQYTFQGKDLDRETLTKEMGDVLWYLSQVAEWANIPFDEVAKDNIQRLNERYPNGYQNQPES
>NZ_CP014924.1|WP_054712567.1|2693931_2694855_-|IS30-family-transposase
MSTTIVSFQNRVVIETLHNEGRSLRYIANYLDFSQTTIFNELHRLNGEYQAELAQTDFERKVSQRGRKSSLTKNLKHLIEEKIQVQKWSPEQVAHVVGIAYKTVYNWIDQGWLDVQLPDLPDHGIRRHRAKEKRGTFSHGRSIEKRPHKIETRQEFGHFEADTVLSGKRKGQAVATFVERKSRLTIVKRLHGRDSQSMTQTVLELARQLQDKLKTLTVDHGKEFANYQTIERRTGTQVYFAHAYSPHERGSNENRNRVLRRFIPKGQAIEELSDHQLVQINWYLNSRPLKCLNWHTPIEIFLLNLRH
>NZ_CP014924.1|WP_054707766.1|2695198_2696503_+|argininosuccinate-synthase
MTENQKVVLAYSGGLDTSVAIPWLKDKGYDVIACCINVGEGKDLDFIKEKALNVGAVKAYVIDALDEFAEDYALVALQGHTFYEGEYPLISALSRPLISKKLVEVAQQENATAVAHGCTGKGNDQVRFEVAIHALNPALEVLSPVRDWHWSREEEINYAKEHNIPIPIDLDSPYSIDANIWGRANEAGVLEDPWVSAPEDAYALTNPIDKTPDTPTDIEITFVKGVPTKLNGKAMKLADLIQDLNKIAGENGIGRIDHIENRLVGIKSREVYEAPAATVLMKAHKQLEDLTFERDLAHFKPVVEDKLSEMIYNALWFSPLMGALQSFLKTTQEVVSGVIKVELFKGNVITLGRKSDNSLYDKNLATYTASDSFDQIAAKGFIKLWGLPTQVYSQVKMKNQQSAFVNAVTKNAKSKVKVAVKTDKKAESEKTGAK
>NZ_CP014924.1|WP_054707764.1|2696502_2697885_+|argininosuccinate-lyase
MSTKKLWGGRFQEQAAAWVDAFGASISFDQLMAEEDIEGSLAHVKMLKATGILTADDSDQIIAGLEGIQTDLEAGNLEFSVENEDIHMNIESILTERIGAVAGKLHTGRSRNDQVATDFHLYLKKRLPKVIDELTTIQTTLVKMAEENVETIMPGYTHLQHAQPISYGHYLMAYYQMFKRDKERLTFNEKHTDMSPLGAAALAGTTFPIDRQMTAKTLGFSEVYANSLDAVSDRDFALEFLSNSSILMMHLSRFCEELSMWVSHEFQYLELSDAYTTGSSIMPQKKNPDMAELIRGKSGRVYGHLMGLLATMKSLPLAYNKDLQEDKEGVFDTVKTLLPALRVFNGMLSTLTVKKENMQHATENDFSNATELADYLAAKGVPFREAHGIVGQLVLKGIQTHQNLQDMSLDDLKQASPAIEADVYNDLKSEVAVERRHSEGGTGFDQVRHQIEVAKQELSL

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Crispr_ID: NZ_CP014924_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_15

2707476-2707612

Orphan

Consensus_repeat	Method
GTAGCCAAGAAAGGCGCGGCCTTCAACCAGATGTGGATTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_15

>merge|NZ_CP014924|15|2707476-2707612|CRISPRCasFinder
GTAGCCAAGAAAGGCGCGGCCTTCAACCAGATGTGGATTTGGTCCCGAAAGTGCTTTACATGCAACTCTTGCCTTCGGGAACGCGTTTCGGCAAAGTAGCCAAGAAAGGCGGGCCTTCAACCAGATGTGGATTTGGT

>NZ_CP014924|15|15|2707476-2707612|CRISPRCasFinder
GTAGCCAAGAAAGGCGCGGCCTTCAACCAGATGTGGATTTGGT	CCCGAAAGTGCTTTACATGCAACTCTTGCCTTCGGGAACGCGTTTCGGCAA
AGTAGCCAAGAAAGGCGGGCCTTCAACCAGATGTGGATTTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_065903002.1\|2716308_2716752_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP014924.1\|WP_065902991.1\|2697996_2698596_+\|DUF1211-domain-containing-protein	unknown	unknown	gnl\|CDD\|226078
NZ_CP014924.1\|WP_054712567.1\|2693931_2694855_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP014924.1\|WP_065902996.1\|2708616_2708883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_054707764.1\|2696502_2697885_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP014924.1\|WP_065903000.1\|2715472_2716021_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP014924.1\|WP_169790395.1\|2699067_2699238_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_065911917.1\|2710100_2710457_+\|LapA-family-protein	unknown	unknown	gnl\|CDD\|227703
NZ_CP014924.1\|WP_065902992.1\|2699471_2700959_+\|ABC-transporter-substrate-binding-protein/permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP014924.1\|WP_056987881.1\|2702167_2703970_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP014924.1\|WP_065937647.1\|2710453_2712781_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_CP014924.1\|WP_056987880.1\|2704081_2705380_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237046
NZ_CP014924.1\|WP_191982247.1\|2714424_2714838_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240649
NZ_CP014924.1\|WP_056987878.1\|2705432_2707349_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP014924.1\|WP_054707766.1\|2695198_2696503_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP014924.1\|WP_083215541.1\|2714120_2714489_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240649
NZ_CP014924.1\|WP_056987868.1\|2712796_2713315_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP014924.1\|WP_056987874.1\|2709142_2710087_+\|ribonuclease-Z	unknown	unknown	gnl\|CDD\|274246
NZ_CP014924.1\|WP_065937646.1\|2707831_2708602_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014924.1\|WP_173585411.1\|2700966_2701698_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_065903002.1\|2716308_2716752_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	2.73637e-32
NZ_CP014924.1\|WP_065902991.1\|2697996_2698596_+\|DUF1211-domain-containing-protein	gnl\|CDD\|226078	COG3548, COG3548, Predicted integral membrane protein [Function unknown].	2.62569e-33
NZ_CP014924.1\|WP_054712567.1\|2693931_2694855_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.45666e-73
NZ_CP014924.1\|WP_054707764.1\|2696502_2697885_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP014924.1\|WP_065903000.1\|2715472_2716021_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.60287e-08
NZ_CP014924.1\|WP_065911917.1\|2710100_2710457_+\|LapA-family-protein	gnl\|CDD\|227703	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown].	3.23113e-14
NZ_CP014924.1\|WP_065902992.1\|2699471_2700959_+\|ABC-transporter-substrate-binding-protein/permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.52883e-89
NZ_CP014924.1\|WP_056987881.1\|2702167_2703970_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP014924.1\|WP_065937647.1\|2710453_2712781_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP014924.1\|WP_056987880.1\|2704081_2705380_+\|GTPase-ObgE	gnl\|CDD\|237046	PRK12297, obgE, GTPase CgtA; Reviewed.	0
NZ_CP014924.1\|WP_191982247.1\|2714424_2714838_-\|hypothetical-protein	gnl\|CDD\|240649	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	4.98957e-30
NZ_CP014924.1\|WP_056987878.1\|2705432_2707349_+\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	3.72749e-70
NZ_CP014924.1\|WP_054707766.1\|2695198_2696503_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP014924.1\|WP_083215541.1\|2714120_2714489_-\|hypothetical-protein	gnl\|CDD\|240649	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains. Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.	5.03715e-51
NZ_CP014924.1\|WP_056987868.1\|2712796_2713315_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	1.01419e-99
NZ_CP014924.1\|WP_056987874.1\|2709142_2710087_+\|ribonuclease-Z	gnl\|CDD\|274246	TIGR02651, Ribonuclease_Z, ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs model TIGR02649, are designated ribonuclease BN. [Transcription, RNA processing].	2.94973e-144
NZ_CP014924.1\|WP_173585411.1\|2700966_2701698_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	2.66308e-150

>NZ_CP014924.1|WP_056987878.1|2705432_2707349_+|acetyltransferase
MQQQSGSKRLKHSRYISGFDGIRTIAVIGVIVYHLLPYSLKGGYLGVPIFFVVSGYLITDLLLQEYEQNGSIDIWAFYGRRMKRLYPALVTMVLTTAAYITLFQRSLFVNLKSIIWTNLLYVYNWWEIGHGQSYFDRFNGESPFTHLWSLSIEGQFYLFWPLILIALLYVFHQRKTIFYLVIGVAVLSAIAMAVLYDPANTNRVYYGTDTRMFAILLGVGLAFMWPATKLKTELPDQARRALNITGAVSLILIVILFFKLSGETSFTYRGGMFIFTLLSTVLVATVAHPAGVMNQVLTNRLFDWVGKRSYGIYLYQFPIMIFYEARVTNIAAHPVLNALIETILILVVSDLSYRYLESPTRHYHYHELPQLVKNCFSRQSQYGWKRWVAIPAVMVTLIALYGAAAAPNHLPAKDNALQNHIQRNQKTVTKDNEAVLSKQKTAQKKAAKPKTAASKYAKVKLTSKQRSVAKDYDLTKTQLLTAKNMPVTAIGDSVMVDVSTDLRQVFPNTYVMAKVGRQVWQAPSEIHGLEAKGALSQNVLINLGTNGPMTTQQINDVIHAIGPKRHIFWVTTHVPTRNWETQTNTTIHEASKRFSNVTVIDWHGLSADHKSWFYNDNVHPNPTGNRYFTALVAKHMTD
>NZ_CP014924.1|WP_056987880.1|2704081_2705380_+|GTPase-ObgE
MFVDQVTINVKAGNGGNGMVAFRREKYEPNGGPAGGDGGRGGSVIFKVNTGLRTLMDFRYNQKFKADSGQNGGIKGMTGRGADDKIVIVPQGTTIIDDETNAVIADLVDPDDEIVAVQGGRGGRGNVHFATPKNPAPELAENGEPGQERRVRLELKLLADVGLIGFPSAGKSTLLSVITDAKPKIGDYHFTTLSPNLGMVRIDVDHDFAVADLPGLIEGAANGVGLGIEFLRHIERTRVLLHVIDVGGYEQRDPYEDFLKINEELKKYDPALLDRPQIVVATKMDLPDAKENLEQLKAKLADDHTLPTPPVVMAISSVTHDGLQPLIAKTAEILDQTPAFPVKGLDDLDEALGLPTEPDSDFTVEQDEDGTWVLSGEKLERLFKMTNMDHEESTLRFARQLRGMGVDDALREKGAKNGDLVQIDDFTFEFVE
>NZ_CP014924.1|WP_056987881.1|2702167_2703970_+|excinuclease-ABC-subunit-UvrC
MASEYLEHKLALLPDLPGIYMMKNINGHIIYVGKAKNLKNRVRSYFKSSHEGKTARLVSEIADFETIIVSNDKEAFLLEITMIQKHQPHYNIKLKQGTGYPYIKITNERDPETKIVSQVRKDGAYYFGPYPNVYAAEETLHFLQKVYPLRRCNGFQHRPCLYYHMGQCLGACFKEVPEEEYAKQIERIKSFLNGNVAEVKRHLNGQMKTASDKLEFERAAEIRDQMHYIEVTVEKQKIISTDKTPRDIFNFYLDKGWLSVQIFFIRQTRLIKREKRLFPIVDDAVSEMSSFITQFYNRKNSVLPKEILVPEEMPKDVLSNVLGVPFRTPQRGEKRALLDMAGKNARLVLEEKFRLLELDEQKTTGAMKEITDALGIRPGHKIEAFDHSHIQGADLVSAMVVFVDGQPNKNLYRKYKLKTVDHADEAASTREVIRRRYSRVLKEHTELPDLILMDGGDIQLDAARDVLENELGLNVPVAAMVKNDKHKTADLLSEVNDTPMHLDPKSQGFYLLQRIQDEVHRFAITFHRQVHTKHSLSSRLDDIPGVGPKTRTKLLRKFGSLKKIADADTEELTKLGISHTVVDTIKLTLANETPQKVEKS
>NZ_CP014924.1|WP_173585411.1|2700966_2701698_+|ATP-binding-cassette-domain-containing-protein
MIEVKNLEKKYDSADVLKDINGVVNQGQVICVIGPSGAGKSTFLRCLNLLEKPTSGTVLFEGTDLVSLKTNELTTLRERMGMVFQSFNLFPNMTVIENLKLAPVRVKHMSDADATKKATELLERVGLAEKADVYPSSLSGGQQQRVAIARALAMDPEVMLFDEPTSALDPEMVGEVLAVMKELADEGMTMVVVTHEMGFAREVADEVWFMADGYILEKNEPNELFNNPQNDRAKDFIGKIINA
>NZ_CP014924.1|WP_065902992.1|2699471_2700959_+|ABC-transporter-substrate-binding-protein/permease
MTIKGKHVLQVVLALCLSLLFFVSFSNVTTNDQTAYAADNSLQKIKQKGTLVVATSPDYPPYEFQTTKNGNSKIVGMDMSVAKKVAKGLGVKLVVKSMSFDSLLVAIETGKADVAIGGINPTAKRRQSVDFTHIYYSGGQSFLVNKAEKLKYSSRAKLKNQKVGAQTGTLQYDLAKQRIPGVTVKGMDKNTDLVLALKTHKIAAVGMETPTAKAYVENDSSLAMIPSGYKLNKNDVGAAIAAPKGSTALIDAMNKSVDQIKKQNLTDGYLKTAGTYMKTNTNNTSMFHYWKYFAKGVEYTLIISAISVVFGVLLGTILALMRFSHNKLVHAIAVAYIEFVRGTPLMVQVMFVYFGIGIIINLPALLSGIIAVSLNSGAYVAEIIRGGIDSVAKGQTEASQSLGLNRTDTMRYVVMPQALKNIWPALGNEFISLIKESSIVSIIGVTDLIYQLNIVRADTYRGVMPVFIAMILYFIMTFILTRILNHYERKMNHAK
>NZ_CP014924.1|WP_169790395.1|2699067_2699238_-|hypothetical-protein
MGLKVKRQDNLDSMFGKFAEMDLKDDKRDKFLKRDEQKDTTKAAKDLIKEKRSYHK
>NZ_CP014924.1|WP_065902991.1|2697996_2698596_+|DUF1211-domain-containing-protein
MNRGRIEAFTDAVLAIILTIMILEFKVPESFQLSAMLAQLPYLISYAIGYLFIGTAWYNHHYMFTQTRHITRDIYWTNNFWMFTTSFLPVATAWVGRGINKQGPEVFYFIVYSAWSFAYVELSRSLIKANEASGHPEVATNIKRMNIYRYLTNWKLVLIQTIVMVIILMYLPALQMVVVVMQIVLVGMRFNEDSDRLDG
>NZ_CP014924.1|WP_054707764.1|2696502_2697885_+|argininosuccinate-lyase
MSTKKLWGGRFQEQAAAWVDAFGASISFDQLMAEEDIEGSLAHVKMLKATGILTADDSDQIIAGLEGIQTDLEAGNLEFSVENEDIHMNIESILTERIGAVAGKLHTGRSRNDQVATDFHLYLKKRLPKVIDELTTIQTTLVKMAEENVETIMPGYTHLQHAQPISYGHYLMAYYQMFKRDKERLTFNEKHTDMSPLGAAALAGTTFPIDRQMTAKTLGFSEVYANSLDAVSDRDFALEFLSNSSILMMHLSRFCEELSMWVSHEFQYLELSDAYTTGSSIMPQKKNPDMAELIRGKSGRVYGHLMGLLATMKSLPLAYNKDLQEDKEGVFDTVKTLLPALRVFNGMLSTLTVKKENMQHATENDFSNATELADYLAAKGVPFREAHGIVGQLVLKGIQTHQNLQDMSLDDLKQASPAIEADVYNDLKSEVAVERRHSEGGTGFDQVRHQIEVAKQELSL
>NZ_CP014924.1|WP_054707766.1|2695198_2696503_+|argininosuccinate-synthase
MTENQKVVLAYSGGLDTSVAIPWLKDKGYDVIACCINVGEGKDLDFIKEKALNVGAVKAYVIDALDEFAEDYALVALQGHTFYEGEYPLISALSRPLISKKLVEVAQQENATAVAHGCTGKGNDQVRFEVAIHALNPALEVLSPVRDWHWSREEEINYAKEHNIPIPIDLDSPYSIDANIWGRANEAGVLEDPWVSAPEDAYALTNPIDKTPDTPTDIEITFVKGVPTKLNGKAMKLADLIQDLNKIAGENGIGRIDHIENRLVGIKSREVYEAPAATVLMKAHKQLEDLTFERDLAHFKPVVEDKLSEMIYNALWFSPLMGALQSFLKTTQEVVSGVIKVELFKGNVITLGRKSDNSLYDKNLATYTASDSFDQIAAKGFIKLWGLPTQVYSQVKMKNQQSAFVNAVTKNAKSKVKVAVKTDKKAESEKTGAK
>NZ_CP014924.1|WP_054712567.1|2693931_2694855_-|IS30-family-transposase
MSTTIVSFQNRVVIETLHNEGRSLRYIANYLDFSQTTIFNELHRLNGEYQAELAQTDFERKVSQRGRKSSLTKNLKHLIEEKIQVQKWSPEQVAHVVGIAYKTVYNWIDQGWLDVQLPDLPDHGIRRHRAKEKRGTFSHGRSIEKRPHKIETRQEFGHFEADTVLSGKRKGQAVATFVERKSRLTIVKRLHGRDSQSMTQTVLELARQLQDKLKTLTVDHGKEFANYQTIERRTGTQVYFAHAYSPHERGSNENRNRVLRRFIPKGQAIEELSDHQLVQINWYLNSRPLKCLNWHTPIEIFLLNLRH
>NZ_CP014924.1|WP_065937646.1|2707831_2708602_-|hypothetical-protein
MNHHMSHRNHLWVAGLAVIAISLAGCQQSTKSQATSSGSQSSQASQSSTKKAESAASASSSNNTVATMKNYQVPASEKQKKSYVKSGLLTIPGEFSYDKAGTKLTLKKKQNSTRKTASTGLSYQMISTKMITNSAKTSAAKQMAEQAFNVTTIANPYQTIQINFKINNQLDQDVRTDGINKVVFNGTNTATSASGLSDSSAGQTIKAHQTRTFHAMVLTGTADTTVTKLAIQFSGSFSANGEKRSSSPKTLDVALN
>NZ_CP014924.1|WP_065902996.1|2708616_2708883_-|hypothetical-protein
MNVIELKILTSHFDPALKIALDQDPIVPITRITLDHDGLQFISQAGHEPLDLATLKHQTRELKGQPTLFYQGQRLFGFRHSQKWLLFK
>NZ_CP014924.1|WP_056987874.1|2709142_2710087_+|ribonuclease-Z
MQIEFLGTGAGSPGKFRNVSSLALRLLEERNSIWLFDAGEGTQHQILRTTIRPRKIDKIFITHLHGDHIFGLPGLLSSRSFQGGNEKLTIYGPKGIRNFVLTSLKVSETKLSYYIEFVEIENEGEIYSDDKFTVYARKLDHKIECFGYRIEEHDHQGELMVDKLREDQIPSGPVYGQLKAGKTVTLPDGRVINGHDYIGHAQKGRIIAILGDTRRTPNSSVLAENADVLVHESTFAKDEANLAHNYYHSTNMQAANIARDGHVGRLLLNHISARYTGKMALELEKQAKSIFPRTKVVKDFDLIDIPFDKERQTN
>NZ_CP014924.1|WP_065911917.1|2710100_2710457_+|LapA-family-protein
MKRQGQLILGIILIIIIAVFSILNVTPVPINFGFVTVRWPLVIVLLGAVFIGALLMFLLTTVTHFQKRRQDKQQPDQPATKLEPETVKQHNRRITGAVAEQNKAAQTTQDQNEKDDRK
>NZ_CP014924.1|WP_065937647.1|2710453_2712781_+|single-stranded-DNA-specific-exonuclease-RecJ
MIESHYDWQVKDVDQPTEAAQQAAEQLKIDPMIAQILINRGYDTIDTMQTFLTPDLSQLHDPFAMHDMQKGVDRIQNAIMNAEKVTIYGDYDADGVTSTAIMYETLDQFGANVDYFIPNRFVDGYGPNTAAFERLIEGGTQLIVTVDNGVSGHDAIARANELGCDVVVTDHHELPETLPDAAAVIHPRHPEGDYPFGGLSGAGVAFKVATALLEEVPQELLDLAAIGTVADLVPVVDENRVLVSLGLKILAQTDRLGLVNRMQGAGIDPSQLTEQSIGFGIAPRLNALGRLDDAAPAVELLTTLDDERASELAQLTEKQNKYRQQLVADISETALTQAQDADHRDHPALVITGEHWHEGVLGIVASKVVETMGKPTVVLNVNPDSNTAKGSGRSVAGFNLFEAFDGHRDLMVAFGGHAGAVGMTAKADQLTALQTAFDDAAETQHLTDQPKGQLNVAARLTADKVTMPLYEQLQRLAPFGTDNPVPLFAFDPETLQNVKAIGADGKHLKFKVEDNGQAVDAIDFGQGALAPVLASAPDQVKLLAQIDINVWQGRTNMQLMVKDIAVTGMVVEDKRTQQLHKTMFSEAGTYVFFNQRVYEQLRTQLPPTAVSIVVTAGQEISDQKINTLFLVDCPASIADLQRVLGHITADRIVAYFYLKQSHYLLGMPERAQYAKLFRFVKTHQNVDVGKRMAELAAYLKIDASQLVLMLQIFSELHFVTIENGQLTPIAQPANQKIETAPSYQSRQTQIETEKQLLYSESAVLKQLLTSFTADK
>NZ_CP014924.1|WP_056987868.1|2712796_2713315_+|adenine-phosphoribosyltransferase
MAIDLTQYIATVPDYPEPGVMFRDISPLMADGEAYRYATDQLVDYARGKNVEMIVGPEARGFIVGCPVAYELGVGFAPARKEGKLPRETVKATYSLEYGTSALYLHKDAIKPGQRVLVTDDLLATGGTIAATIQLVEDLGGIVVGTAFIIELKDLHGRDKIKGHDIFSLMEY
>NZ_CP014924.1|WP_083215541.1|2714120_2714489_-|hypothetical-protein
MPFQKKLRAGDWTGGYHIMGHDLIGATVGIVGYGHIGQAVAKILSSFGVTVLIYNRTHYETAYGEYVDWDTLFKTADFVTLHLAAVPETTKIINAETLALMKPTASLINLARGAIVDEEALE
>NZ_CP014924.1|WP_191982247.1|2714424_2714838_-|hypothetical-protein
MTEKIIMPAVADDLTDHYLTKQGFEVLTVDNPDAENILATAPDAAAVMMISNKIPNSLYDKMPNLKILARRGVGYDNIDVAFAAKKGVWVTNTPGANAVSVAEAAVLDIMLMARQFDAISKKTARRRLDWWLPHHGA
>NZ_CP014924.1|WP_065903000.1|2715472_2716021_-|GNAT-family-N-acetyltransferase
MQLTKATIADLDNIVAILSDGRDQLAEKGVDQWQGDYPSADQITDDINHGFAYLAHADDNQTVGAIAIVTAPDHSYDTMTGDWLNHNDNYLVIHRVAIHSNHGGKGYATQLFESVISHVEANHPEIDSIRIDTHADNKAMQHLIDKMNFTKVGEIYGVYHKDDISYVYERLTSNPKTMPHAS
>NZ_CP014924.1|WP_065903002.1|2716308_2716752_+|universal-stress-protein
MYQHILVPLDGSANSNQALQEAIELSRVFGAKLTLLTVVNNSNWIAASGSIATDITKDYRERAERLLAQGRAITDKAGIQTTSVIKTGIPKNVIVDYCQSEDIDLIVIGKSGADAINRLLIGSTTAYVVRHATVRVLVVNAQEDPEA

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Crispr_ID: NZ_CP014924_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014924_16

2931557-2931661

Orphan

Consensus_repeat	Method
GCCTTGCGGAGCACGTTTGGTCTCGAGGACAGTAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014924_16

>merge|NZ_CP014924|16|2931557-2931661|CRISPRCasFinder
GCCTTGCGGAGCACGTTTGGTCTCGAGGACAGTAGAAAGTAGAGAGTCCGTTACACGTTAGCCCCGTGCCTTGCGGAGCACGTTTAGTCTCGAGGACAGTAGAAA

>NZ_CP014924|16|16|2931557-2931661|CRISPRCasFinder
GCCTTGCGGAGCACGTTTGGTCTCGAGGACAGTAGAAA	GTAGAGAGTCCGTTACACGTTAGCCCCGT
GCCTTGCGGAGCACGTTTAGTCTCGAGGACAGTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014924.1\|WP_054709973.1\|2926634_2927489_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|274669
NZ_CP014924.1\|WP_054709966.1\|2931872_2932196_-\|MazG-like-family-protein	unknown	unknown	gnl\|CDD\|212133
NZ_CP014924.1\|WP_054709954.1\|2936919_2937798_+\|aldose-1-epimerase-family-protein	unknown	unknown	gnl\|CDD\|185701
NZ_CP014924.1\|WP_065903148.1\|2938259_2938934_-\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|237699
NZ_CP014924.1\|WP_056987961.1\|2923811_2924651_+\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NZ_CP014924.1\|WP_065937663.1\|2939023_2941012_+\|DNA-topoisomerase-IV-subunit-B	unknown	unknown	gnl\|CDD\|235542
NZ_CP014924.1\|WP_065903146.1\|2933968_2935384_+\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NZ_CP014924.1\|WP_082615681.1\|2935562_2936624_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176258
NZ_CP014924.1\|WP_065903138.1\|2925757_2926369_+\|YpmS-family-protein	unknown	unknown	gnl\|CDD\|378302
NZ_CP014924.1\|WP_065937662.1\|2929350_2931453_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235516
NZ_CP014924.1\|WP_065903144.1\|2933413_2933938_+\|HslU--HslV-peptidase-proteolytic-subunit	unknown	unknown	gnl\|CDD\|235477
NZ_CP014924.1\|WP_065903137.1\|2924836_2925745_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239947
NZ_CP014924.1\|WP_056987964.1\|2932480_2933392_+\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|274042
NZ_CP014924.1\|WP_065903136.1\|2922971_2923661_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NZ_CP014924.1\|WP_054709944.1\|2943572_2944541_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP014924.1\|WP_054709977.1\|2926399_2926618_+\|YozE-family-protein	unknown	unknown	gnl\|CDD\|184229
NZ_CP014924.1\|WP_065903152.1\|2941029_2943471_+\|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl\|CDD\|235503
NZ_CP014924.1\|WP_065903139.1\|2927481_2928252_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NZ_CP014924.1\|WP_065903141.1\|2928310_2929180_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|376794
NZ_CP014924.1\|WP_054709988.1\|2922220_2922709_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932

Protein	Function_ID	Function_description	E-value
NZ_CP014924.1\|WP_054709973.1\|2926634_2927489_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|274669	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. [Protein synthesis, Other].	2.77013e-138
NZ_CP014924.1\|WP_054709966.1\|2931872_2932196_-\|MazG-like-family-protein	gnl\|CDD\|212133	cd11523, NTP-PPase, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain superfamily. This superfamily contains enzymes that hydrolyze the alpha-beta phosphodiester bond of all canonical NTPs into monophosphate derivatives and pyrophosphate (PPi). Divalent ions, such as Mg2+ ion(s), are essential to activate a proposed water nucleophile and stabilize the charged intermediates to facilitate catalysis. These enzymes share a conserved divalent ion-binding motif EXX[E/D] in their active sites. They also share a highly conserved four-helix bundle, where one face forms the active site, while the other participates in oligomer assembly. The four-helix bundle consists of two central antiparallel alpha-helices that can be contained within a single protomer or form upon dimerization. The superfamily members include dimeric dUTP pyrophosphatases (dUTPases; EC 3.6.1.23), the nonspecific NTP-PPase MazG proteins, HisE-encoded phosphoribosyl ATP pyrophosphohydolase (PRA-PH), fungal histidine biosynthesis trifunctional proteins, and several uncharacterized protein families.	2.56704e-11
NZ_CP014924.1\|WP_054709954.1\|2936919_2937798_+\|aldose-1-epimerase-family-protein	gnl\|CDD\|185701	cd09024, Aldose_epim_lacX, Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	8.26386e-140
NZ_CP014924.1\|WP_065903148.1\|2938259_2938934_-\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|237699	PRK14392, PRK14392, glycerol-3-phosphate acyltransferase.	7.96495e-107
NZ_CP014924.1\|WP_056987961.1\|2923811_2924651_+\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.23726e-108
NZ_CP014924.1\|WP_065937663.1\|2939023_2941012_+\|DNA-topoisomerase-IV-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NZ_CP014924.1\|WP_065903146.1\|2933968_2935384_+\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_CP014924.1\|WP_082615681.1\|2935562_2936624_-\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176258	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP014924.1\|WP_065903138.1\|2925757_2926369_+\|YpmS-family-protein	gnl\|CDD\|378302	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140). This domain, found in various hypothetical prokaryotic proteins, has no known function.	9.69231e-62
NZ_CP014924.1\|WP_065937662.1\|2929350_2931453_+\|type-I-DNA-topoisomerase	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
NZ_CP014924.1\|WP_065903144.1\|2933413_2933938_+\|HslU--HslV-peptidase-proteolytic-subunit	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	2.3147e-103
NZ_CP014924.1\|WP_065903137.1\|2924836_2925745_+\|hypothetical-protein	gnl\|CDD\|239947	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.	1.33593e-61
NZ_CP014924.1\|WP_056987964.1\|2932480_2933392_+\|tyrosine-recombinase-XerC	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.32618e-144
NZ_CP014924.1\|WP_065903136.1\|2922971_2923661_-\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	8.75686e-59
NZ_CP014924.1\|WP_054709944.1\|2943572_2944541_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.82595e-32
NZ_CP014924.1\|WP_054709977.1\|2926399_2926618_+\|YozE-family-protein	gnl\|CDD\|184229	PRK13672, PRK13672, hypothetical protein; Provisional.	1.59505e-35
NZ_CP014924.1\|WP_065903152.1\|2941029_2943471_+\|DNA-topoisomerase-IV-subunit-A	gnl\|CDD\|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP014924.1\|WP_065903139.1\|2927481_2928252_+\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	1.94531e-101
NZ_CP014924.1\|WP_065903141.1\|2928310_2929180_+\|DNA-protecting-protein-DprA	gnl\|CDD\|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	6.9907e-87
NZ_CP014924.1\|WP_054709988.1\|2922220_2922709_+\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	6.01091e-70

>NZ_CP014924.1|WP_065937662.1|2929350_2931453_+|type-I-DNA-topoisomerase
MPTSTKKRAKRKKPQKKLVIVESPAKAKTIEKYLGRTYKVMASLGHVRDLPKSKMGVDVDHDYDPHYISIRGKGDVIKELRSEAKKAKQVYLAADPDREGESIAWHLSHILDLDPKDKNRVVFNEITKDAVKDAFKTPRSIDMDLVDAQQARRILDRLVGYSISPLLWKKVKKGLSAGRVQSIALKLIIDRETEIKNFEPEEYWTIDTEFKHKRSKFAASFYGRNVKKQDLPNNEAVQKVLADIDRDGDFDITKVTRKERKRSPQPPFTTSAMQQEANRKLNFRTRKTMMAAQQLYEGINIGKEGSQGLITYMRTDSTRISNIAKHEASSFIHEKYGAEYAATKPIKGKLPEGAQDAHEAIRPTSVYRTPADLKEYLTNDQFKLYSLVWNRFMSSQMTPAVMDTMAVTLEQNGVTFKANGSKMKFDGFLKLYKDGKEKDNLLPDLNEGDTVTLSKTDPAQHFTQPPARYSEANLIKALEENGVGRPSTYAPTLDTIQRRYYVKLTGRRFEPTELGDIVNSIIQDCFPDIVNVGFTAGLEKELDGIEEGHQNWVKVVDDFYKPFLKEVDHAQDTIEKIQIKDEPAGFDCDICGAPMVIKMGRYGKFYACSRFPDCRNTKPIVKEIGVICPKCKQGQVIERKSKKNRIFYGCSRYPDCDFVTWDKPVGRDCPKDGHYLVEKKVKGGLQVVCPNGDYEEEVQK
>NZ_CP014924.1|WP_065903141.1|2928310_2929180_+|DNA-protecting-protein-DprA
MDKRRLLLRLRLAKGIGIKGETLIYQWLQAHPTGVKRLLPEDMARIANLNPTKAKQFYTSFTSQQLSDVLTRHLNEANWLTILDKHYPAQLKESYLPPNVLFYQGNLALLTAGKLLGVVGAREPNQYAQTAMKRLLPQPIQQNHVIVSGLAKGVDALSHRLAIHAGGHTIGVIGTGLNLTYPAQNRKLQAYMAAHELVLIEYPIGDVGKPHHFVERNRIIAGLTETVLVVQAKQHSGSLITANLAIQNNRNVLAVPGRIDDPLSAGCNELILAGAKPVLTPQHILEEFL
>NZ_CP014924.1|WP_065903139.1|2927481_2928252_+|ribonuclease-HII
MTDRRSIADYKKGFMAVTSETDPLFVEAAADSRKGVQQLIAQTHKRLAKLADAKNAFEKRFFYENQARDKGRTVIAGIDEVGRGPLAGPVISCAIVLPADFDVLGVNDSKQLSDHKREELYPQILNEAVSVGIGWASAQQIDDLNIYQATRVAMLEAVNHLTVKPQQLLIDAMSIDTDIPQLKLIKGDAKSISIGAASIVAKVFRDHVMQSYDQRYPGYEFSHNAGYGTKAHLAGLAQLGPTPIHRKTFAPVSDFF
>NZ_CP014924.1|WP_054709973.1|2926634_2927489_+|ribosome-biogenesis-GTPase-YlqF
MATIQWFPGHMAKAIRQLEENLHVVDIVFELVDARIPDASRNPEIERLIKDKPHLMILTKSDLADPAQTKNWIAHFKAMGLPAIAVDSKANITTKTVTKIAQSILGDKLAAEQQKGLKERPIRAITVGIPNVGKSTLLNRLVNKRVAQVGDTPGVTKGQQWLRSSSKLSLLDTPGILWPKFEDEETGQKLALTGAIKDKRFASDDVALFALHFFRETYPEALPERYKLSDADLDLSDVDLLLAITKKIGMKDDYDRASERLIQDTRKAKLGRYTLDRMDGDRND
>NZ_CP014924.1|WP_054709977.1|2926399_2926618_+|YozE-family-protein
MRRSFYQYLMTLRNPEDHGSVAEFANNAFLDQAFPKQDTHFDSISKYLEENAPYLPSMTIFDEAWTMYQAAE
>NZ_CP014924.1|WP_065903138.1|2925757_2926369_+|YpmS-family-protein
MQRSAQTKQKQPRNPWKWGFLGLVLIIVIGFIFLLTQFTGASSVKQPTATTAKSAASFNVSLNKKQLNAMSDYYLDRFQDKNDSQMNYKFHVKNDAVVTGQAKVLGITVHFGLSLTPKLLKNGNVQLKAKKLAVGQLSVPVKAVMSYIKKSYNLPKWVVLDTKQKTITLNLNAFRTKGVQYRATKIDMSSAGKFEFKVLIPKK
>NZ_CP014924.1|WP_065903137.1|2924836_2925745_+|hypothetical-protein
MRRLVKWVVAVVVIIVLGVGGYWLFQQHKTTTTEQDKTPATKQVKLVAIGDSLTQGIGYANDHKGYLPDLKNDLQKAYYVKLSSSNYGIGGLRSDQIDKRVRTNQKERASLKKANVITLTVGGNDLLQSLEKSIFVSSNKQLDSKLTPVKKTYRKKVQRLIKDIRAVNPNATIYMFGIYNPVYVYFTNATMITNAVAQWNVVNKSVAQQSDNVHFVSISKQLTYGQYQSAASKAKLKQEVTKSNSKYVSASSVESLLQNQTSKEKNDYLSDEDHFHPNHRGYRYMAKTLAGVMGKYESWQSK
>NZ_CP014924.1|WP_056987961.1|2923811_2924651_+|DegV-family-protein
MASVKIVTDSSAGLTDEEVEKYHITIVPLTVMIDDVVYVERHTITNEEFINKMESSKTFPKTSQPPLGDFIKVFDELGADGSSVVCLDMLEGISGTVHTAEQAATISKTDVTVIDSGTTDRALALQVIAAAKLAQQGGSKEDVLAVIDKVRNHTKLFMGVMTLSNLVKGGRISRVTGAISSLLNIKIVLQVGDGNLDIRTKGRGAKPIDRYFDQVVEQMKGLKINAIGISHVNAMGEVKRLTDKLQPLFPNVDILVRETVPIIATHGGPGAFALIYSYD
>NZ_CP014924.1|WP_065903136.1|2922971_2923661_-|hemolysin-III-family-protein
MGGLFLLQSNQKQKRSVAPQFSRRYQIINEVLNSVTHGIGVGLSIAGLVLLIIRAVHLGGAMRITAYTVYGAILVLFYLASTMFHSLYFTKASHVFQIFDHCAIYLLIAGTYTPYCLVVIRGTLGWVIFGVTWVTAVLGIIYKSLWLGKFQKLSTILYVVMGWFCVLGFKPLYNGLGPHGFLLLVLGGVAFTAGAVLYSFKNIKFGHVIWHLFVLLGTILMFFSVYLYA
>NZ_CP014924.1|WP_054709988.1|2922220_2922709_+|dihydrofolate-reductase
MIFIWAEDNNHGIGYKGNLPWHLSSDMRFFKRTTTGNTLVSGSRTFASYGKPLPHRKNIVLTTNRHKTYPEGVLVLHSVDDLLTYEDHHPDETIYISGGAKVFASLLPYVDELLRTRIDHEFKVDTYMPDIDYSQFELVSSEAGVVDEKSPYVHYFEAFKRR
>NZ_CP014924.1|WP_054709966.1|2931872_2932196_-|MazG-like-family-protein
MDLNSHQEWLADFYHQRGWDTYSPQIGINFMTEEVGELSRAVRTMEIGRDHPGERKASDAKMMANLREEMADVLDQVLFCASKYGVRADELLRGSEEKLTKRFEGRD
>NZ_CP014924.1|WP_056987964.1|2932480_2933392_+|tyrosine-recombinase-XerC
MSDLEATFITYLTSERQYSDETVKAYREDIDAFRHFLSETGGATDLLSVSKLDVQVYLSQLYDEHKARTTIARKISSLRSFYEFMVREHQITQNPFAYVTLKKRPAPLPRFFYEKEMTALFQAAAANPDATLALRDSAILEVLYATGIRVSECCGLRLDDVDDSTQLMLIHGKGNKERYVPFGNYAKHALQTYLSDCRAPLMAKYHQTHDTLFINHYGRPITATGVEYVLNQVIDRSTLTGDIHPHMLRHTFATHLLNHGADLRTVQELLGHSSLSTTQIYTHVTKAHLQRDYRKYFPRATHD
>NZ_CP014924.1|WP_065903144.1|2933413_2933938_+|HslU--HslV-peptidase-proteolytic-subunit
MTSIVAVQHNGHSAMAGDGQVTMGEKVIMKGQAQKIRKIYDGKVAVGFAGGVADAITLEEKFEAKLKEFDGDLQRAAVELAQQWRSDQGLQKLEAMLIVMDKDNMLLVSGTGEVIAPDDGILAIGSGGNFAQAAALAMHRHATDMSAGEIAKAALGIASEIDIFTNENIKVEEF
>NZ_CP014924.1|WP_065903146.1|2933968_2935384_+|ATP-dependent-protease-ATPase-subunit-HslU
MDPITKTPKEIVSLLDDYVVGQSDAKKSISIALRNRYRRMQLPVAMQDEITPKNMLMIGPTGVGKTELARRLAKIVKAPFVKVEATKFTEVGYVGGDVESMVRSLADVAVKMEKDSQFENVRAEAARRANNRLTKLIVPGKKPKQKQQNDMSAMMNMFSQLQQGNMPSAPEQPKEEVTDDIKNERMSVSDQLAKGLLENREVEIEMDDPQQAAAGNNPMMNQMGIDLSDTLGQMMPKRRVKRNMPVSEAREVLIQEESEKLVNEGDINHDAIKRAENTGIIFIDEIDKIASKNNQNSGEVSREGVQRDILPIVEGTQVQTKYGLLSTDHILFIAAGAFAESKPSDLIAELQGRFPIRVELDDLDKDDFVRILTEPTNSLIKQYTALIGTDNIKVTFTMEAIERIAELSAELNHEKQNIGARRLHTVLEKLLEDLLYEGPDMQMGDITITENYVNDKIGNIVKDKDLSRYIL
>NZ_CP014924.1|WP_082615681.1|2935562_2936624_-|zinc-dependent-alcohol-dehydrogenase-family-protein
MRRYKMTTTQIQNLPTEMKAWQVTTPGPIDGAESPLAFVTKPVPTPERGEVLVKVLACGVCHTDLHVTEGDLPVHHEHVTPGHEIVGEVVATGPETSRFQLGDRIGIPWLRWTCGVCEFCRSGRENLCPNSLYTGWDHDGGYAEYVTAPEGFSYRIPDQFDNITAAPLLCAGIIGYRAYHRANLPAGGRLGLYGFGGSAHITAQIALDQGMEVHVLTRGTDARKFALELGAKSAQGPYDLPPVKLDSSIIFAPVGDIVPKALEGLAPGGTLALAGIHLTDIPSLNYQDHIFHEKNLTSVESNTRRDGEEFLTLADRLNIHPETTPYAFDKADEALRYVKKGDIRGACVLKISD
>NZ_CP014924.1|WP_054709954.1|2936919_2937798_+|aldose-1-epimerase-family-protein
MISLHSNDLTVKINEKGAELTSVNDAAEKIEYIWQADPMYWGRHAPILFPIVGRLQDNQYTLDGETYHMDQHGFARDYTFKVLEHDDGHAVFQLLTDDEMKTRYPFEFDLQVTFTLTGHTMDVSYHVLNLDDRAMPFSIGGHPGFNVPLNPYEGGFEDYAITVAPRRSYAQIPLVGPYNDADHEKTLNLTTPLKLDHDLFNQDALILDLDHVETTVMLSSTVNDHGVALTVENAPYVGIWSPYPKRAPFVAIEPWWGIADSVNATGDFRQKMGIQTIQPNAEFTADYQIRFF
>NZ_CP014924.1|WP_065903148.1|2938259_2938934_-|glycerol-3-phosphate-acyltransferase
MIKYGPVQCNESTLEEIKLKLVLLLILAYLLGAIPNGVWIGKLFFHTDICKAGSGNIGTTNTYRVLGPVAGTTVMVLDIAKGTVATLLPMWFHITTVNPLLFGLMAILGHTFSIFDGFKGGKAVATSAGMLLAYNPVFFIIACLLFISFIYLTSMVSLASMISFSIITILSILFHDVYLSIIAIVLTIFVFYRHRTNIKRIREGTENMVPFGLGFRHRNQKSSK
>NZ_CP014924.1|WP_065937663.1|2939023_2941012_+|DNA-topoisomerase-IV-subunit-B
MANKKPTYDDSSIQVLEGLEAVRKRPGMYIGSTDGRGLHHLVYEIVDNAVDEALAGYGDEIDVVIEVDNSITVQDHGRGMPVGMHASGKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSSELTVNIVRDGVMYEQKFKDGGHPVTTLVKKGNTRKPTGTRLHFKPDSSIFTTTVYNFNTLAERLRESAFLLKGVKITLTDKRQDQEHEEIYHFEDGIKEFVSYLNEDKETLGDVMYFDGKKDGVEVEVAAQYNDGYTENLLSFVNNVRTKDGGTHESGMRSAWTKAFNEYAKKVGLLKEKDKNLEGSDVREGLSAVISLRVPEEILQFEGQTKEKLGTPEARTIVDSVLSEQLGYYLMENGEFAQMLIHKSLRARTAREAARKARDESRNGKKHKRKERLLSGKLTPAQSKNAEKNELFLVEGDSAGGSAKQGRNRKFQAILPLRGKVLNTEKAKLEDVMKNEELNTMIYTIGAGVGSEFNIKDANYDKIIIMTDADDDGAHIQTLLLTFFYKYMRPMIDAGRVYIALPPLYMIQAGSGKKTSISYAWTDDELAKKTKTLGKSYKLQRFKGLGEMDAEQLWETTMDPEARTLVRVRIDDASLAERRVTTLMGDKVEPRRKWIEDNVAFTLEEDGSILDNNVAKSAHADAANAD
>NZ_CP014924.1|WP_065903152.1|2941029_2943471_+|DNA-topoisomerase-IV-subunit-A
MVADHIQELTLEEVMSDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKPFRKSAKSVGNVMGNFHPHGDSSIYEALNRMSQDWKVREPLIEMHGNNGSMDGDPPAAMRYTEARLSKIAGEMLRDIDKDTVDMVLNFDDTEYEPTVLPAKFPNLLVNGATGISAGYATDIPPHNLGEVIDALIYLMDHPKADLDQLMQFVKGPDFPTGGIIQGLDGIKKAYKTGRGRIVVRSKTAIEDIRGNKQLIRVSEIPYEVNKAVLVKRIDELRMLKKVDGISEVRDESDREGLSIAIELKREADAQGILNYLFKNTDLQVTYNFNMVAINHRRPEHVGLKTILVAYLEHQQDVITRRTKFELDKAQKRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVKAYDFSEEQADAIVALQLYRLTNTDVTALEKEAAELADSIKEYHKILDEPKELNKVLRGELRSINKTYRNDRRTEIQDEITPLKISTEVVVSDEDVVVMVSRDGYLKRSGVRSYSASDPDDNGLKEDDYPIFMDKLSTLDHLYMFTNKGNLIYRPVYEISDARWKDTGEHISQTIGLSDDEQIIATYAFSDLKAPGEFLIATDEGYIKRTELSALQPSRTYKSRAMVYEKLKADDAHVVDVTFMAKPEQTTVLLMSKLGLALRFDIAEIPVNGARTTGVKSMNLGEDDCVTDMQLITDDDVVSLITQRGAFKKMKASELPVTSRARKGVMVLHALKNNPHEVVDFLKLQDDQAIEVITDHRRMHDILPAEHPLSTRYSNGSFVIDIEKEGTPEILRLKPTSLTLS
>NZ_CP014924.1|WP_054709944.1|2943572_2944541_+|LysR-family-transcriptional-regulator
MKSKQESIFSSKTLTYFLQLSETMNYTQAAQILGITQPALTQQIKKLERTVGARLFYSVGKKLRLTDAGYTMLDATHKIYDILNDAADEIQQSTSATQGDIKIGILASVEDSVFEDFAIQSYRENPDVKISFHMLTRKEIWDRLENNQIDLAIMYLPDESIKNWKPYESKRIISDDLLFIHHDESLSKKKRIKFADLPSKPWATYPNNYYLNHMMRESFKNAMVDMPTSVAQFTTPLQLLRFSKQTGAYTALPNSFYVGQGDFPNTWTARFEPNIRFELAFVFRSGKDKIPRIGHFLAQFDQYLKTKDYLSRLQEIQAENKE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	315194-315247	0	1.0
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	1547531-1547584	0	1.0
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	2743500-2743553	0	1.0
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	240551-240604	1	0.981
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	2970131-2970184	1	0.981
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	3259075-3259128	1	0.981
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	3316345-3316398	1	0.981
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	1889351-1889404	1	0.981
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	2198896-2198949	1	0.981
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	354639-354692	2	0.963
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	438033-438086	2	0.963
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	753139-753192	2	0.963
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	913671-913724	2	0.963
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	500582-500635	2	0.963
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	1274629-1274682	2	0.963
NZ_CP014924_3	3.1\|986738\|54\|NZ_CP014924\|CRISPRCasFinder	986738-986791	54	NZ_CP014924.1	2644311-2644364	2	0.963

1. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 315194-315247, mismatch: 0, identity: 1.0

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	Protospacer
******************************************************

2. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 1547531-1547584, mismatch: 0, identity: 1.0

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	Protospacer
******************************************************

3. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 2743500-2743553, mismatch: 0, identity: 1.0

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	Protospacer
******************************************************

4. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 240551-240604, mismatch: 1, identity: 0.981

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccagact	Protospacer
*************************************************.****

5. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 2970131-2970184, mismatch: 1, identity: 0.981

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggactctgaccaaaaagtcagacccggact	Protospacer
*********************************************.********

6. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 3259075-3259128, mismatch: 1, identity: 0.981

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaagggactctgaccaaaaagtcaggcccggact	Protospacer
*********************** ******************************

7. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 3316345-3316398, mismatch: 1, identity: 0.981

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggactctgaccaaaaagtcagacccggact	Protospacer
*********************************************.********

8. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 1889351-1889404, mismatch: 1, identity: 0.981

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaagggactctgaccaaaaagtcaggcccggact	Protospacer
*********************** ******************************

9. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 2198896-2198949, mismatch: 1, identity: 0.981

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccagact	Protospacer
*************************************************.****

10. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 354639-354692, mismatch: 2, identity: 0.963

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggactctgacccaaaagtcaggcctggact	Protospacer
*********************************** ************.*****

11. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 438033-438086, mismatch: 2, identity: 0.963

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggactctggtcaaaaagtcaggcccggact	Protospacer
********************************..********************

12. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 753139-753192, mismatch: 2, identity: 0.963

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggtgctaacgtgtaacggactatgaccaaaaagtcaggcccggact	Protospacer
********** ****************** ************************

13. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 913671-913724, mismatch: 2, identity: 0.963

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacgggactaacgtgtaacggactctggccaaaaagtcaggcccggact	Protospacer
***********.********************.*********************

14. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 500582-500635, mismatch: 2, identity: 0.963

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggacgatgaccaaaaagtcaggcccggact	Protospacer
****************************  ************************

15. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 1274629-1274682, mismatch: 2, identity: 0.963

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaacggacggtgaccaaaaagtcaggcccggact	Protospacer
****************************  ************************

16. spacer 3.1|986738|54|NZ_CP014924|CRISPRCasFinder matches to position: 2644311-2644364, mismatch: 2, identity: 0.963

caaggcacggggctaacgtgtaacggactctgaccaaaaagtcaggcccggact	CRISPR spacer
caaggcacggggctaacgtgtaagggactctgaccaaaaagtcaggcccagact	Protospacer
*********************** *************************.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP028227	Lactobacillus plantarum strain SRCM101187 plasmid unnamed1, complete sequence	19696-19725	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP025691	Lactobacillus plantarum strain IRG1 plasmid pIRG101, complete sequence	69344-69373	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP035574	Lactobacillus plantarum strain SRCM103303 plasmid unnamed3	68449-68478	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP035176	Lactobacillus plantarum strain SRCM103426 plasmid unnamed2	51746-51775	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP035177	Lactobacillus plantarum strain SRCM103426 plasmid unnamed3	13676-13705	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP024060	Lactobacillus plantarum strain KACC 92189 plasmid unnamed2	17932-17961	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP014885	Lactobacillus backii strain TMW 1.1991 plasmid pL11991-4, complete sequence	21443-21472	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP023493	Lactobacillus plantarum strain NCIMB 700965 plasmid unamed3, complete sequence	28837-28866	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP017356	Lactobacillus plantarum strain TMW 1.25 plasmid pL125-2, complete sequence	157-186	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP017366	Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-3, complete sequence	3454-3483	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP017368	Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-5, complete sequence	20387-20416	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP023773	Lactobacillus plantarum strain PC520 plasmid p1, complete sequence	39054-39083	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP026509	Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed4, complete sequence	3706-3735	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP025416	Lactobacillus plantarum strain X7021 plasmid unnamed4, complete sequence	25995-26024	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP029967	Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence	46647-46676	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP018183	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-3, complete sequence	21382-21411	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP035148	Lactobacillus plantarum strain SRCM103361 plasmid unnamed1	86735-86764	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP012279	Pediococcus damnosus strain TMW 2.1533 plasmid pL21533-4, complete sequence	14192-14221	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP017358	Lactobacillus plantarum strain TMW 1.25 plasmid pL125-4, complete sequence	16077-16106	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP020097	Lactobacillus plantarum strain K25 plasmid unnamed4, complete sequence	8341-8370	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP035569	Lactobacillus plantarum strain SRCM103300 plasmid unnamed3	21570-21599	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP023303	Lactobacillus plantarum strain pc-26 plasmid p.pc-2602, complete sequence	25498-25527	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NC_016608	Pediococcus claussenii ATCC BAA-344 plasmid pPECL-5, complete sequence	11334-11363	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP028276	Lactobacillus plantarum strain SRCM100995 plasmid unnamed1, complete sequence	13105-13134	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP014891	Lactobacillus backii strain TMW 1.1992 plasmid pL11992-1, complete sequence	24666-24695	0	1.0
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_AP017932	Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence	9561-9590	1	0.967
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP033890	Lactobacillus plantarum strain LMT1-48 plasmid p_2, complete sequence	21911-21940	1	0.967
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP018868	Lactobacillus alimentarius DSM 20249 plasmid pLDW-11, complete sequence	43758-43787	1	0.967
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NC_021516	Lactobacillus plantarum 16 plasmid Lp16C, complete sequence	20107-20136	1	0.967
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP035132	Lactobacillus plantarum strain SRCM103311 plasmid unnamed1	7231-7260	1	0.967
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP017410	Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence	8270-8299	1	0.967
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NC_022114	Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence	11871-11900	1	0.967
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP017376	Lactobacillus plantarum strain TMW 1.708 plasmid pL1708-2, complete sequence	21301-21330	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP019031	Lactobacillus fermentum strain SNUV175 plasmid pSNU175-2, complete sequence	31495-31524	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP028231	Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence	7576-7605	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_KM063576	Lactobacillus reuteri strain LU4 plasmid pLU4, complete sequence	11636-11665	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP035557	Lactobacillus plantarum strain SRCM103297 plasmid unnamed1	49309-49338	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP021933	Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence	53166-53195	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP032746	Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed2, complete sequence	11412-11441	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_AP014682	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence	11448-11477	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NC_011839	Lactobacillus gasseri plasmid pLgLA39, complete sequence	24240-24269	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP035152	Pediococcus acidilactici strain SRCM103367 plasmid unnamed1	44371-44400	2	0.933
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP032752	Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed1, complete sequence	43851-43880	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP015862	Lactobacillus plantarum strain LZ227 plasmid LZ227p5, complete sequence	29683-29712	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP031209	Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence	2194-2223	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP035015	Lactobacillus plantarum strain 12_3 plasmid pldC, complete sequence	28009-28038	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP017381	Lactobacillus plantarum strain TMW 1.1623 plasmid pL11623-2, complete sequence	4770-4799	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP015967	Lactobacillus plantarum strain LZ206 plasmid LZ206p2, complete sequence	3105-3134	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP046661	Lactobacillus plantarum strain 83-18 plasmid p83-18.1, complete sequence	12025-12054	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP028336	Lactobacillus plantarum strain SRCM101167 plasmid unnamed2, complete sequence	42118-42147	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NC_020820	Lactobacillus brevis KB290 plasmid pKB290-1, complete sequence	9630-9659	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP040857	Lactobacillus plantarum strain 202195 plasmid unnamed, complete sequence	1902-1931	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NC_015603	Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequence	8455-8484	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP016492	Lactobacillus pentosus strain BGM48 plasmid pBGM48-1, complete sequence	20516-20545	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NC_011352	Lactobacillus paracasei plasmid plca36, complete sequence	11637-11666	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP032650	Lactobacillus plantarum strain ZFM4 plasmid unnamed2, complete sequence	18966-18995	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP046657	Lactobacillus plantarum strain 123-17 plasmid p123-18.1, complete sequence	11198-11227	3	0.9
NZ_CP014924_7	7.6\|1580286\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580286-1580315	30	NZ_CP028242	Lactobacillus plantarum strain SRCM101518 plasmid unnamed1, complete sequence	8520-8549	3	0.9
NZ_CP014924_7	7.1\|1579956\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1579956-1579985	30	NC_008242	Chelativorans sp. BNC1 plasmid 1, complete sequence	308942-308971	5	0.833
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	KX160215	Lactococcus phage 98104, complete genome	15511-15540	6	0.8
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	KX160205	Lactococcus phage 49801, complete genome	16413-16442	6	0.8
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	KX160212	Lactococcus phage 98101, complete genome	15282-15311	6	0.8
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	KX160218	Lactococcus phage 98204, complete genome	17274-17303	6	0.8
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	KX160217	Lactococcus phage 98203, complete genome	16069-16098	6	0.8
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	KX160214	Lactococcus phage 98103, complete genome	16153-16182	6	0.8
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	KX160213	Lactococcus phage 98102, complete genome	15212-15241	6	0.8
NZ_CP014924_7	7.9\|1580484\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580484-1580513	30	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	148125-148154	6	0.8
NZ_CP014924_7	7.9\|1580484\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580484-1580513	30	MF417881	Uncultured Caudovirales phage clone 7AX_3, partial genome	4725-4754	6	0.8
NZ_CP014924_7	7.9\|1580484\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580484-1580513	30	MF417989	Uncultured Caudovirales phage clone 7F_4, partial genome	99-128	6	0.8
NZ_CP014924_7	7.9\|1580484\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580484-1580513	30	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	158082-158111	6	0.8
NZ_CP014924_7	7.11\|1580616\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580616-1580645	30	MH638312	Bacillus phage Kioshi, complete genome	46612-46641	6	0.8
NZ_CP014924_7	7.3\|1580088\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580088-1580117	30	MF041990	Lactobacillus phage phiEF-1.1, complete genome	28222-28251	7	0.767
NZ_CP014924_7	7.4\|1580154\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580154-1580183	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	970430-970459	7	0.767
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	NZ_KX364409	Aeromonas salmonicida subsp. salmonicida strain M16474-11 plasmid pAsa8, complete sequence	99688-99717	7	0.767
NZ_CP014924_7	7.11\|1580616\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580616-1580645	30	MH179478	Pseudomonas phage 67PfluR64PP, complete genome	32595-32624	7	0.767
NZ_CP014924_7	7.11\|1580616\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580616-1580645	30	MH179475	Pseudomonas phage 71PfluR64PP, complete genome	8154-8183	7	0.767
NZ_CP014924_7	7.11\|1580616\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580616-1580645	30	MH179472	Pseudomonas phage 22PfluR64PP, complete genome	32475-32504	7	0.767
NZ_CP014924_11	11.1\|1817319\|32\|NZ_CP014924\|PILER-CR	1817319-1817350	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1087561-1087592	7	0.781
NZ_CP014924_11	11.1\|1817319\|32\|NZ_CP014924\|PILER-CR	1817319-1817350	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	556850-556881	7	0.781
NZ_CP014924_7	7.3\|1580088\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580088-1580117	30	MN434095	Klebsiella pneumoniae phage JIPh_Kp122, complete genome	146219-146248	8	0.733
NZ_CP014924_7	7.3\|1580088\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580088-1580117	30	NC_041878	Pectobacterium phage CBB, complete genome	123319-123348	8	0.733
NZ_CP014924_7	7.3\|1580088\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580088-1580117	30	MN850632	Escherichia phage alia, complete genome	21197-21226	8	0.733
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	NC_017296	Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence	168347-168376	8	0.733
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	NC_015686	Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence	168347-168376	8	0.733
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	NC_001988	Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence	168347-168376	8	0.733
NZ_CP014924_7	7.5\|1580220\|30\|NZ_CP014924\|CRISPRCasFinder,CRT,PILER-CR	1580220-1580249	30	MK649825	Klebsiella pneumoniae strain BA813 plasmid pBA813_1, complete sequence	93419-93448	8	0.733
NZ_CP014924_7	7.9\|1580484\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580484-1580513	30	MK448350	Streptococcus satellite phage Javan19, complete genome	8670-8699	8	0.733
NZ_CP014924_7	7.9\|1580484\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580484-1580513	30	MK448604	Streptococcus satellite phage Javan70, complete genome	6907-6936	8	0.733
NZ_CP014924_7	7.11\|1580616\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580616-1580645	30	NC_042091	Pseudomonas phage nickie, complete genome	20365-20394	8	0.733
NZ_CP014924_11	11.3\|1817318\|33\|NZ_CP014924\|CRISPRCasFinder,CRT	1817318-1817350	33	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1087561-1087593	8	0.758
NZ_CP014924_11	11.3\|1817318\|33\|NZ_CP014924\|CRISPRCasFinder,CRT	1817318-1817350	33	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	556849-556881	8	0.758
NZ_CP014924_7	7.2\|1580022\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580022-1580051	30	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	530422-530451	9	0.7
NZ_CP014924_7	7.2\|1580022\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580022-1580051	30	NZ_LR594663	Variovorax sp. RA8 plasmid 2	165106-165135	9	0.7
NZ_CP014924_7	7.3\|1580088\|30\|NZ_CP014924\|CRISPRCasFinder,CRT	1580088-1580117	30	NC_028686	Klebsiella phage JD18, complete genome	146062-146091	9	0.7
NZ_CP014924_11	11.1\|1817319\|32\|NZ_CP014924\|PILER-CR	1817319-1817350	32	GU911304	Burkholderia phage KL3, complete genome	17575-17606	9	0.719
NZ_CP014924_12	12.5\|1826019\|33\|NZ_CP014924\|PILER-CR	1826019-1826051	33	MN694409	Marine virus AFVG_250M249, complete genome	5846-5878	9	0.727
NZ_CP014924_12	12.8\|1826013\|33\|NZ_CP014924\|CRISPRCasFinder	1826013-1826045	33	MN694409	Marine virus AFVG_250M249, complete genome	5846-5878	9	0.727
NZ_CP014924_12	12.9\|1826074\|33\|NZ_CP014924\|CRISPRCasFinder	1826074-1826106	33	MT774387	CrAssphage cr111_1, complete genome	83322-83354	9	0.727
NZ_CP014924_11	11.1\|1817319\|32\|NZ_CP014924\|PILER-CR	1817319-1817350	32	NZ_CP012265	Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence	56419-56450	11	0.656

1. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028227 (Lactobacillus plantarum strain SRCM101187 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

2. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025691 (Lactobacillus plantarum strain IRG1 plasmid pIRG101, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

3. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035574 (Lactobacillus plantarum strain SRCM103303 plasmid unnamed3) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

4. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035176 (Lactobacillus plantarum strain SRCM103426 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

5. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035177 (Lactobacillus plantarum strain SRCM103426 plasmid unnamed3) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

6. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024060 (Lactobacillus plantarum strain KACC 92189 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

7. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014885 (Lactobacillus backii strain TMW 1.1991 plasmid pL11991-4, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

8. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023493 (Lactobacillus plantarum strain NCIMB 700965 plasmid unamed3, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

9. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017356 (Lactobacillus plantarum strain TMW 1.25 plasmid pL125-2, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

10. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017366 (Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-3, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

11. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017368 (Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-5, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

12. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023773 (Lactobacillus plantarum strain PC520 plasmid p1, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

13. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026509 (Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed4, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

14. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025416 (Lactobacillus plantarum strain X7021 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

15. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029967 (Lactobacillus curvatus strain ZJUNIT8 plasmid pnunamed1, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

16. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018183 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-3, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

17. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035148 (Lactobacillus plantarum strain SRCM103361 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

18. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012279 (Pediococcus damnosus strain TMW 2.1533 plasmid pL21533-4, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

19. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017358 (Lactobacillus plantarum strain TMW 1.25 plasmid pL125-4, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

20. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020097 (Lactobacillus plantarum strain K25 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

21. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035569 (Lactobacillus plantarum strain SRCM103300 plasmid unnamed3) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

22. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023303 (Lactobacillus plantarum strain pc-26 plasmid p.pc-2602, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

23. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_016608 (Pediococcus claussenii ATCC BAA-344 plasmid pPECL-5, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

24. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028276 (Lactobacillus plantarum strain SRCM100995 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

25. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014891 (Lactobacillus backii strain TMW 1.1992 plasmid pL11992-1, complete sequence) position: , mismatch: 0, identity: 1.0

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtacagttggattatctcgacc	Protospacer
******************************

26. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017932 (Lactobacillus sakei strain LK-145 plasmid pLs145-a, complete sequence) position: , mismatch: 1, identity: 0.967

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcgggatacagttggattatctcgacc	Protospacer
********.*********************

27. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033890 (Lactobacillus plantarum strain LMT1-48 plasmid p_2, complete sequence) position: , mismatch: 1, identity: 0.967

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggattatctcgacc	Protospacer
**********.*******************

28. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018868 (Lactobacillus alimentarius DSM 20249 plasmid pLDW-11, complete sequence) position: , mismatch: 1, identity: 0.967

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggattatctcgacc	Protospacer
**********.*******************

29. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_021516 (Lactobacillus plantarum 16 plasmid Lp16C, complete sequence) position: , mismatch: 1, identity: 0.967

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggattatctcgacc	Protospacer
**********.*******************

30. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035132 (Lactobacillus plantarum strain SRCM103311 plasmid unnamed1) position: , mismatch: 1, identity: 0.967

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcgggatacagttggattatctcgacc	Protospacer
********.*********************

31. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017410 (Lactobacillus plantarum strain RI-113 plasmid pRI113_4, complete sequence) position: , mismatch: 1, identity: 0.967

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggattatctcgacc	Protospacer
**********.*******************

32. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_022114 (Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence) position: , mismatch: 1, identity: 0.967

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggattatctcgacc	Protospacer
**********.*******************

33. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017376 (Lactobacillus plantarum strain TMW 1.708 plasmid pL1708-2, complete sequence) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgacc	Protospacer
**********.********.**********

34. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019031 (Lactobacillus fermentum strain SNUV175 plasmid pSNU175-2, complete sequence) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagctggattatctcgacc	Protospacer
**********.***.***************

35. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028231 (Lactobacillus plantarum strain SRCM101222 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgacc	Protospacer
**********.********.**********

36. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KM063576 (Lactobacillus reuteri strain LU4 plasmid pLU4, complete sequence) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagctggattatctcgacc	Protospacer
**********.***.***************

37. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035557 (Lactobacillus plantarum strain SRCM103297 plasmid unnamed1) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgacc	Protospacer
**********.********.**********

38. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021933 (Lactobacillus plantarum strain TMW 1.1478 plasmid pL11478-1, complete sequence) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgacc	Protospacer
**********.********.**********

39. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032746 (Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgacc	Protospacer
**********.********.**********

40. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014682 (Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgacc	Protospacer
**********.********.**********

41. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_011839 (Lactobacillus gasseri plasmid pLgLA39, complete sequence) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagctggattatctcgacc	Protospacer
**********.***.***************

42. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035152 (Pediococcus acidilactici strain SRCM103367 plasmid unnamed1) position: , mismatch: 2, identity: 0.933

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgacc	Protospacer
**********.********.**********

43. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032752 (Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgatc	Protospacer
**********.********.********.*

44. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015862 (Lactobacillus plantarum strain LZ227 plasmid LZ227p5, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggttcagttggactatctcgatc	Protospacer
********** ********.********.*

45. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031209 (Lactobacillus brevis strain UCCLB521 plasmid pUCCLB521_A, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggttcagttggactatctcgatc	Protospacer
********** ********.********.*

46. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035015 (Lactobacillus plantarum strain 12_3 plasmid pldC, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggttcagttggactatctcgatc	Protospacer
********** ********.********.*

47. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017381 (Lactobacillus plantarum strain TMW 1.1623 plasmid pL11623-2, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgatc	Protospacer
**********.********.********.*

48. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015967 (Lactobacillus plantarum strain LZ206 plasmid LZ206p2, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgatc	Protospacer
**********.********.********.*

49. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046661 (Lactobacillus plantarum strain 83-18 plasmid p83-18.1, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgatc	Protospacer
**********.********.********.*

50. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028336 (Lactobacillus plantarum strain SRCM101167 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggttcagttggactatctcgatc	Protospacer
********** ********.********.*

51. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_020820 (Lactobacillus brevis KB290 plasmid pKB290-1, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggttcagttggactatctcgatc	Protospacer
********** ********.********.*

52. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040857 (Lactobacillus plantarum strain 202195 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggttcagttggactatctcgatc	Protospacer
********** ********.********.*

53. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_015603 (Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgatc	Protospacer
**********.********.********.*

54. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016492 (Lactobacillus pentosus strain BGM48 plasmid pBGM48-1, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggttcagttggactatctcgatc	Protospacer
********** ********.********.*

55. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_011352 (Lactobacillus paracasei plasmid plca36, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagctggattatctcgatc	Protospacer
**********.***.*************.*

56. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032650 (Lactobacillus plantarum strain ZFM4 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgatc	Protospacer
**********.********.********.*

57. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046657 (Lactobacillus plantarum strain 123-17 plasmid p123-18.1, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgatc	Protospacer
**********.********.********.*

58. spacer 7.6|1580286|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028242 (Lactobacillus plantarum strain SRCM101518 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.9

atctcggggtacagttggattatctcgacc	CRISPR spacer
atctcggggtgcagttggactatctcgatc	Protospacer
**********.********.********.*

59. spacer 7.1|1579956|30|NZ_CP014924|CRISPRCasFinder,CRT matches to NC_008242 (Chelativorans sp. BNC1 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

aagtcggcgagttgttgatccacttagctg--	CRISPR spacer
aggtcggcgaggtgttgatccac--ggctgct	Protospacer
*.********* ***********  .****

60. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to KX160215 (Lactococcus phage 98104, complete genome) position: , mismatch: 6, identity: 0.8

cacatcattattaaatttatcgccgttaat	CRISPR spacer
aacattattattaaatttattgccgtcttt	Protospacer
 ****.**************.*****.  *

61. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to KX160205 (Lactococcus phage 49801, complete genome) position: , mismatch: 6, identity: 0.8

cacatcattattaaatttatcgccgttaat	CRISPR spacer
aacattattattaaatttattgccgtcttt	Protospacer
 ****.**************.*****.  *

62. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to KX160212 (Lactococcus phage 98101, complete genome) position: , mismatch: 6, identity: 0.8

cacatcattattaaatttatcgccgttaat	CRISPR spacer
aacattattattaaatttattgccgtcttt	Protospacer
 ****.**************.*****.  *

63. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to KX160218 (Lactococcus phage 98204, complete genome) position: , mismatch: 6, identity: 0.8

cacatcattattaaatttatcgccgttaat	CRISPR spacer
aacattattattaaatttattgccgtcttt	Protospacer
 ****.**************.*****.  *

64. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to KX160217 (Lactococcus phage 98203, complete genome) position: , mismatch: 6, identity: 0.8

cacatcattattaaatttatcgccgttaat	CRISPR spacer
aacattattattaaatttattgccgtcttt	Protospacer
 ****.**************.*****.  *

65. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to KX160214 (Lactococcus phage 98103, complete genome) position: , mismatch: 6, identity: 0.8

cacatcattattaaatttatcgccgttaat	CRISPR spacer
aacattattattaaatttattgccgtcttt	Protospacer
 ****.**************.*****.  *

66. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to KX160213 (Lactococcus phage 98102, complete genome) position: , mismatch: 6, identity: 0.8

cacatcattattaaatttatcgccgttaat	CRISPR spacer
aacattattattaaatttattgccgtcttt	Protospacer
 ****.**************.*****.  *

67. spacer 7.9|1580484|30|NZ_CP014924|CRISPRCasFinder,CRT matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 6, identity: 0.8

cgcttgataccctgctccgtctcctgctcg	CRISPR spacer
agtttgatcccctgcgccgtctcctgcgtg	Protospacer
 *.***** ****** *********** .*

68. spacer 7.9|1580484|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MF417881 (Uncultured Caudovirales phage clone 7AX_3, partial genome) position: , mismatch: 6, identity: 0.8

cgcttgataccctgctccgtctcctgctcg	CRISPR spacer
ccattgatacccggcaccgtctcctgccct	Protospacer
*  ********* ** ***********.*

69. spacer 7.9|1580484|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MF417989 (Uncultured Caudovirales phage clone 7F_4, partial genome) position: , mismatch: 6, identity: 0.8

cgcttgataccctgctccgtctcctgctcg	CRISPR spacer
ccattgatacccggcaccgtctcctgccct	Protospacer
*  ********* ** ***********.*

70. spacer 7.9|1580484|30|NZ_CP014924|CRISPRCasFinder,CRT matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 6, identity: 0.8

cgcttgataccctgctccgtctcctgctcg	CRISPR spacer
agcacgataccctgctccgcctcccgctgg	Protospacer
 ** .**************.****.*** *

71. spacer 7.11|1580616|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MH638312 (Bacillus phage Kioshi, complete genome) position: , mismatch: 6, identity: 0.8

cagcgccagttgaaccttgtggttgagttt	CRISPR spacer
ctgtgagagttctaccttgtggttgagttt	Protospacer
* *.*  ****  *****************

72. spacer 7.3|1580088|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MF041990 (Lactobacillus phage phiEF-1.1, complete genome) position: , mismatch: 7, identity: 0.767

cagttgctgatgattcagcagccgaattaa	CRISPR spacer
aagttgctgttgattcagcagcttttttag	Protospacer
 ******** ************.   ***.

73. spacer 7.4|1580154|30|NZ_CP014924|CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.767

aattttacaatcgcatgcaggaacttggct	CRISPR spacer
agttcgacaatcgcatggaggaacttgttg	Protospacer
*.**. *********** ********* .

74. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX364409 (Aeromonas salmonicida subsp. salmonicida strain M16474-11 plasmid pAsa8, complete sequence) position: , mismatch: 7, identity: 0.767

cacatcat-tattaaatttatcgccgttaat	CRISPR spacer
-atgaaatacattaaatttaacgccgttaat	Protospacer
 *..  ** .********** **********

75. spacer 7.11|1580616|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MH179478 (Pseudomonas phage 67PfluR64PP, complete genome) position: , mismatch: 7, identity: 0.767

cagcgccagttgaaccttgtggttgagttt	CRISPR spacer
ggctgccagttgaacatggtggttgagtat	Protospacer
 . .*********** * ********** *

76. spacer 7.11|1580616|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MH179475 (Pseudomonas phage 71PfluR64PP, complete genome) position: , mismatch: 7, identity: 0.767

cagcgccagttgaaccttgtggttgagttt	CRISPR spacer
ggctgccagttgaacatggtggttgagtat	Protospacer
 . .*********** * ********** *

77. spacer 7.11|1580616|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MH179472 (Pseudomonas phage 22PfluR64PP, complete genome) position: , mismatch: 7, identity: 0.767

cagcgccagttgaaccttgtggttgagttt	CRISPR spacer
ggctgccagttgaacatggtggttgagtat	Protospacer
 . .*********** * ********** *

78. spacer 11.1|1817319|32|NZ_CP014924|PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 7, identity: 0.781

accacgggcaatgcgggcaacgaatacggtag	CRISPR spacer
atctcgggcaatgcgggcatcgaattcgcacg	Protospacer
*.* *************** ***** **   *

79. spacer 11.1|1817319|32|NZ_CP014924|PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 7, identity: 0.781

accacgggcaatgcgggcaacgaatacggtag	CRISPR spacer
atctcgggcaatgcgggcatcgaattcgcacg	Protospacer
*.* *************** ***** **   *

80. spacer 7.3|1580088|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MN434095 (Klebsiella pneumoniae phage JIPh_Kp122, complete genome) position: , mismatch: 8, identity: 0.733

cagttgctgatgattcagcagccgaattaa	CRISPR spacer
cagttgctgatgatttagcaaccgtgaatg	Protospacer
***************.****.*** .   .

81. spacer 7.3|1580088|30|NZ_CP014924|CRISPRCasFinder,CRT matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 8, identity: 0.733

cagttgctgatgattcagcagccgaattaa	CRISPR spacer
acgttgctgatgattcagaagacgaagctg	Protospacer
  **************** ** **** . .

82. spacer 7.3|1580088|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MN850632 (Escherichia phage alia, complete genome) position: , mismatch: 8, identity: 0.733

cagttgctgatgattcagcagccgaattaa	CRISPR spacer
gagttgctgatgatacagcagcaatacaga	Protospacer
 ************* ******* . *. .*

83. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 8, identity: 0.733

cacatcattattaaatttatcgccgttaat	CRISPR spacer
gttttcattatgaaatttatcgccgcttaa	Protospacer
  . ******* *************.* *

84. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 8, identity: 0.733

cacatcattattaaatttatcgccgttaat	CRISPR spacer
gttttcattatgaaatttatcgccgcttaa	Protospacer
  . ******* *************.* *

85. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 8, identity: 0.733

cacatcattattaaatttatcgccgttaat	CRISPR spacer
gttttcattatgaaatttatcgccgcttaa	Protospacer
  . ******* *************.* *

86. spacer 7.5|1580220|30|NZ_CP014924|CRISPRCasFinder,CRT,PILER-CR matches to MK649825 (Klebsiella pneumoniae strain BA813 plasmid pBA813_1, complete sequence) position: , mismatch: 8, identity: 0.733

cacatcattattaaatttatcgccgttaat-----	CRISPR spacer
ggcatcactattaaatttatcgc-----ataccca	Protospacer
 .*****.***************     **

87. spacer 7.9|1580484|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MK448350 (Streptococcus satellite phage Javan19, complete genome) position: , mismatch: 8, identity: 0.733

cgcttgataccctgctccgtctcctgctcg	CRISPR spacer
tttttgatactctgctcggtctcctgttgt	Protospacer
. .*******.****** ********.*

88. spacer 7.9|1580484|30|NZ_CP014924|CRISPRCasFinder,CRT matches to MK448604 (Streptococcus satellite phage Javan70, complete genome) position: , mismatch: 8, identity: 0.733

cgcttgataccctgctccgtctcctgctcg	CRISPR spacer
tttttgatactctgctcggtctcctgttgt	Protospacer
. .*******.****** ********.*

89. spacer 7.11|1580616|30|NZ_CP014924|CRISPRCasFinder,CRT matches to NC_042091 (Pseudomonas phage nickie, complete genome) position: , mismatch: 8, identity: 0.733

cagcgccagttgaaccttgtggttgagttt	CRISPR spacer
gttcgccagttgatccttgtggttggcgta	Protospacer
   ********** ***********.  *

90. spacer 11.3|1817318|33|NZ_CP014924|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.758

caccacgggcaatgcgggcaacgaatacggtag	CRISPR spacer
gatctcgggcaatgcgggcatcgaattcgcacg	Protospacer
 *.* *************** ***** **   *

91. spacer 11.3|1817318|33|NZ_CP014924|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.758

caccacgggcaatgcgggcaacgaatacggtag	CRISPR spacer
gatctcgggcaatgcgggcatcgaattcgcacg	Protospacer
 *.* *************** ***** **   *

92. spacer 7.2|1580022|30|NZ_CP014924|CRISPRCasFinder,CRT matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 9, identity: 0.7

ttctgcttccccattcctttcaacgaatca	CRISPR spacer
gactccttccccattcctttcaccgtgcgt	Protospacer
  ** ***************** ** ..

93. spacer 7.2|1580022|30|NZ_CP014924|CRISPRCasFinder,CRT matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 9, identity: 0.7

ttctgcttccccattcctttcaacgaatca	CRISPR spacer
gactccttccccattcctttcaccgtgcgt	Protospacer
  ** ***************** ** ..

94. spacer 7.3|1580088|30|NZ_CP014924|CRISPRCasFinder,CRT matches to NC_028686 (Klebsiella phage JD18, complete genome) position: , mismatch: 9, identity: 0.7

cagttgctgatgattcagcagccgaattaa	CRISPR spacer
tagttgctgatgatttagcaaccgtgaatg	Protospacer
.**************.****.*** .   .

95. spacer 11.1|1817319|32|NZ_CP014924|PILER-CR matches to GU911304 (Burkholderia phage KL3, complete genome) position: , mismatch: 9, identity: 0.719

accacgggcaatgcgggcaacgaatacggtag	CRISPR spacer
acgggcggcaatgcgggcaacgatttcggatt	Protospacer
** .  ***************** * ***

96. spacer 12.5|1826019|33|NZ_CP014924|PILER-CR matches to MN694409 (Marine virus AFVG_250M249, complete genome) position: , mismatch: 9, identity: 0.727

cttgccgtttgaccgttcagcctcgtcaccggt	CRISPR spacer
tttgccgtttgactgtttagcctcgctcatcgt	Protospacer
.************.***.*******..  . **

97. spacer 12.8|1826013|33|NZ_CP014924|CRISPRCasFinder matches to MN694409 (Marine virus AFVG_250M249, complete genome) position: , mismatch: 9, identity: 0.727

cttgccgtttgaccgttcagcctcgtcaccggt	CRISPR spacer
tttgccgtttgactgtttagcctcgctcatcgt	Protospacer
.************.***.*******..  . **

98. spacer 12.9|1826074|33|NZ_CP014924|CRISPRCasFinder matches to MT774387 (CrAssphage cr111_1, complete genome) position: , mismatch: 9, identity: 0.727

tcactatctctttcagcagttctcatcggcttg	CRISPR spacer
tttctatttcttgcagcagttctcatctgagct	Protospacer
*. ****.**** ************** *  .

99. spacer 11.1|1817319|32|NZ_CP014924|PILER-CR matches to NZ_CP012265 (Cronobacter condimenti 1330 strain LMG 26250 plasmid pCCO1, complete sequence) position: , mismatch: 11, identity: 0.656

accacgggcaatgcgggcaacgaatacggtag	CRISPR spacer
cgaacgggcattgcgggtaacgaataatacga	Protospacer
   ******* ******.********  ....

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1055682 : 1119708

Streptococcus_phage(12.5%)

portal,capsid,terminase,head,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065900857.1\|1055682_1056987_-\|transposase	IS1380 family transposase	A0A1X9I6F6	Streptococcus_phage	2.6e-131	55.7
WP_065900954.1\|1057161_1058544_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.3e-28	30.8
WP_065937539.1\|1058946_1059666_-	hypothetical protein	NA	NA	NA	NA
WP_054711977.1\|1059841_1060291_-	hypothetical protein	NA	NA	NA	NA
WP_083215475.1\|1062449_1064213_-	hypothetical protein	NA	NA	NA	NA
WP_056987503.1\|1064405_1065815_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_054711985.1\|1065858_1066326_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_054711987.1\|1067233_1067632_-	hypothetical protein	NA	NA	NA	NA
WP_065928544.1\|1068565_1068787_+	hypothetical protein	NA	NA	NA	NA
WP_056987505.1\|1068789_1069470_+	hypothetical protein	NA	NA	NA	NA
WP_054712002.1\|1069545_1070172_+	DUF1275 domain-containing protein	NA	NA	NA	NA
WP_065937540.1\|1070489_1071947_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_056987507.1\|1072254_1073274_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_191982562.1\|1074354_1076781_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_191982555.1\|1076889_1077891_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_054712821.1\|1077966_1078545_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_056987148.1\|1078803_1079724_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_054712818.1\|1079972_1080290_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_065928744.1\|1080615_1081104_-	effector binding domain-containing protein	NA	NA	NA	NA
WP_065900954.1\|1081501_1082884_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.3e-28	30.8
WP_083215477.1\|1083409_1085041_-	hypothetical protein	NA	NA	NA	NA
WP_065901835.1\|1085517_1087146_-	hypothetical protein	NA	NA	NA	NA
WP_054712113.1\|1087369_1087840_-	hypothetical protein	NA	NA	NA	NA
WP_054712111.1\|1088013_1088739_-	TatD family hydrolase	NA	NA	NA	NA
WP_065901838.1\|1088739_1089687_-	hydroxyacid dehydrogenase	M1HMI7	Paramecium_bursaria_Chlorella_virus	1.1e-30	33.6
WP_082409389.1\|1089698_1089863_-	hypothetical protein	NA	NA	NA	NA
WP_054712109.1\|1090194_1090602_-	hypothetical protein	NA	NA	NA	NA
WP_083215578.1\|1090747_1092040_-	MATE family efflux transporter	NA	NA	NA	NA
WP_065901845.1\|1092168_1093071_-	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	9.5e-08	26.5
WP_054712107.1\|1093248_1093704_+	hypothetical protein	NA	NA	NA	NA
WP_054711767.1\|1094068_1094509_+	OsmC family protein	NA	NA	NA	NA
WP_054711801.1\|1094638_1095040_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_156319364.1\|1096535_1096793_-	hypothetical protein	NA	NA	NA	NA
WP_156652848.1\|1096811_1096997_+	hypothetical protein	NA	NA	NA	NA
WP_054711773.1\|1097078_1097675_-	hypothetical protein	NA	NA	NA	NA
WP_054711775.1\|1098338_1098659_-	thiamine-binding protein	NA	NA	NA	NA
WP_054711778.1\|1098804_1099284_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_083215579.1\|1099782_1101042_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	4.4e-19	28.7
WP_065901847.1\|1101185_1101992_-	MBL fold metallo-hydrolase	A0A2I7SDH3	Paenibacillus_phage	5.3e-34	34.6
WP_065937543.1\|1102473_1103130_+	NADPH-dependent F420 reductase	NA	NA	NA	NA
WP_056987344.1\|1103758_1104589_-	two-component system regulatory protein YycI	NA	NA	NA	NA
WP_065901849.1\|1104613_1105912_-	hypothetical protein	NA	NA	NA	NA
WP_083215478.1\|1105901_1107776_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.0e-32	33.5
WP_065901851.1\|1108043_1108763_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-41	40.4
WP_042522391.1\|1109691_1109892_-	cold-shock protein	Q9AZD3	Lactococcus_phage	1.6e-21	74.6
WP_054711791.1\|1110010_1110382_-	hypothetical protein	NA	NA	NA	NA
WP_065901853.1\|1110555_1110825_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_054711795.1\|1110949_1112485_-\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	2.0e-45	25.9
WP_054711797.1\|1112481_1113582_-\|portal	phage portal protein	A0A2H4J9Q5	uncultured_Caudovirales_phage	3.3e-47	33.6
WP_042522387.1\|1113578_1113776_-	hypothetical protein	NA	NA	NA	NA
WP_065901855.1\|1113735_1115433_-\|terminase	terminase large subunit	A0A2H4JBN3	uncultured_Caudovirales_phage	9.8e-123	41.1
WP_054711942.1\|1115429_1115903_-\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_054711944.1\|1116680_1117091_-	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	1.9e-19	44.8
WP_065937544.1\|1117171_1117513_-\|head	phage head closure protein	E9LUQ5	Lactobacillus_phage	2.8e-13	39.8
WP_054711946.1\|1117522_1117705_-	sporulation protein Cse60	NA	NA	NA	NA
WP_065901857.1\|1117776_1118148_-	hypothetical protein	NA	NA	NA	NA
WP_065901858.1\|1118313_1119708_-	virulence protein	Q4ZD27	Staphylococcus_phage	3.2e-71	36.5

DBSCAN-SWA_2

2346063 : 2354317

Enterococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054711476.1\|2346063_2347059_+	D-2-hydroxyacid dehydrogenase	M1HMI7	Paramecium_bursaria_Chlorella_virus	2.3e-39	35.5
WP_065902744.1\|2347114_2347696_-	TIGR00730 family Rossman fold protein	A0A1D3SNB7	Enterococcus_phage	4.8e-21	37.3
WP_065937624.1\|2347992_2348949_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	1.6e-117	63.4
WP_056987566.1\|2348974_2351146_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.6e-258	61.1
WP_054711467.1\|2351281_2351512_-	glutaredoxin-like protein NrdH	V5UQJ1	Enterococcus_phage	2.3e-11	49.3
WP_056987569.1\|2351744_2352227_+	nucleoside deaminase	NA	NA	NA	NA
WP_065902749.1\|2352535_2354317_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	8.3e-56	40.1

DBSCAN-SWA_3

2754461 : 2765965

Streptococcus_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065903034.1\|2754461_2756351_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.1e-130	47.4
WP_065903035.1\|2756536_2757700_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.0e-22	28.2
WP_054707664.1\|2758248_2760087_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	3.5e-25	26.2
WP_054707660.1\|2760241_2760697_-	type II toxin-antitoxin system HicB family antitoxin	A0A1X9I727	Streptococcus_phage	2.1e-43	60.7
WP_054707657.1\|2760724_2760907_-	type II toxin-antitoxin system HicA family toxin	A0A1X9I5W4	Streptococcus_phage	3.3e-21	75.0
WP_054707655.1\|2761033_2761945_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	6.0e-18	26.3
WP_065903036.1\|2762099_2764442_+	FAD-binding protein	A0A2P0ZL82	Lactobacillus_phage	5.1e-45	50.3
WP_056987840.1\|2765011_2765965_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.8e-65	44.7

DBSCAN-SWA_4

3246572 : 3255117

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056987621.1\|3246572_3247163_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.1e-23	34.3
WP_156770492.1\|3247131_3248175_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.4e-63	41.9
WP_065903506.1\|3248164_3249625_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.5e-50	32.6
WP_065937706.1\|3249600_3251832_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.2e-146	40.7
WP_054706778.1\|3251836_3252508_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_054706775.1\|3252504_3252762_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_082409110.1\|3252789_3253485_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D8KNF0	Synechococcus_phage	1.3e-36	36.3
WP_065903509.1\|3254634_3255117_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.8e-21	41.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP014931

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014931_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014931_1

27-130

Orphan

Consensus_repeat	Method
AACTGCACTTTTTGCAGTTCCGCTTGTAGCAAGGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014931_1

>merge|NZ_CP014931|1|27-130|CRISPRCasFinder
AACTGCACTTTTTGCAGTTCCGCTTGTAGCAAGGGTTTGCGAGGCGTTGTCAACGGACTTATGCGGAACTGCACTTTTTGCAGTTCCGCTTGTAGCAAGGGTTT

>NZ_CP014931|1|1|27-130|CRISPRCasFinder
AACTGCACTTTTTGCAGTTCCGCTTGTAGCAAGGGTTT	GCGAGGCGTTGTCAACGGACTTATGCGG
AACTGCACTTTTTGCAGTTCCGCTTGTAGCAAGGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014931.1\|WP_156773238.1\|1823_1985_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014931.1\|WP_065937806.1\|3189_4611_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014931.1\|WP_057878253.1\|4699_4963_-\|type-II-toxin-antitoxin-system-PrlF-family-antitoxin	unknown	unknown	gnl\|CDD\|236638
NZ_CP014931.1\|WP_010015136.1\|5982_6195_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014931.1\|WP_065937804.1\|1266_1836_+\|DUF536-domain-containing-protein	unknown	unknown	unknown
NZ_CP014931.1\|WP_065937807.1\|5040_5628_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271192
NZ_CP014931.1\|WP_065937805.1\|2180_3200_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014931.1\|WP_065937810.1\|8977_9997_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014931.1\|WP_065937809.1\|8024_8624_+\|DUF536-domain-containing-protein	unknown	unknown	unknown
NZ_CP014931.1\|WP_065937808.1\|6915_7851_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444

>NZ_CP014931.1|WP_065937804.1|1266_1836_+|DUF536-domain-containing-protein
MGKTIRQLSEELRLSKQAINQRINSINGFRSKHTHKVKNHLEIDNQGVKMLANFDKQKRQERQPNRQAENDKDKNIDQILLKQLDVKDQQIANLQQALDQQQKLQIATVAENHRLKEHVQKLSGLLEPSSATQQQSNDKDDTLSNSDNSSHIKDKNNKQNGNKVAVYDNRQKKSFKRKNNNNWWHFWKN
>NZ_CP014931.1|WP_156773238.1|1823_1985_+|hypothetical-protein
MEKLRIAKVIIKNLMEQFSGVCTINKVGFLFGAGAEISYGMPIGGKLANFLKR
>NZ_CP014931.1|WP_065937805.1|2180_3200_+|hypothetical-protein
MNNKYNAAPTQTGFQYQTLCAVYFFLLKIESIACLNNEGQDDFDIVFQDGSTKFFQVKEIQNSTDKLTSQKIKDSLKTFTADVTAGSKITELGIVTNTSNPFGKSSRPGFANPYFSISYTNLTPAEKRQIDNGNSSSSKSKLTDSDLEKITITKIHYDGNDTDSKYQELLNKAKRFIGPTEILESQIDALLNEWLLTFERTAQNPKVTITKEKFTSITELVALDSPKFDDFFEFFDDDSNQDYIKNEYRDYLAKVCLDFQIRSEIDTNFREYQLKNRLREPSRKKRRKNFIEKYAPTLGTKIGLQNSSEDISISRLIIWLLIRQGSLCHSIEELVNIDY
>NZ_CP014931.1|WP_065937806.1|3189_4611_+|hypothetical-protein
MIIKKLKVDDKTFPFDPQKTLITSKVNSVGKTSLLRMLLYSLGYKIPSTKGLNFNKMYFITEININKIDYEFFRHNDNLKINNITNKSSDVFSVKAQQIEILSILYTTDSLEILKNILGTHYFDQEKGWTLLNRGLVIGKIRFNIEELLTGFNSKELADTNNHLKNLIKEKNDYLKIKPLLELNRGFDPSTVTDRDIDIDVLHDRLRSNNIEIRKTKNRISQYKQVKNDNQHFIDLIDNLAIRIKTKTGIQVIKKNDIVGFNENQELILAQISRLNRYLNQLNDIKFNLNKKINSSMSLVKLDSQLDHFKASIHNLNITPESIELIVKDYNYEINHTKEQIKKSLYNLKVTEKIFFRVKKYASILGVEDMLDNNTTFLLTDNLKRYSGAKLHLLVFAYRLALLKEIQNTTGECIPLVIDSPMAGELDEDNLSKMFQLLNTEFSNNQIIIASIFDINKITPINKIITLDKGVLK
>NZ_CP014931.1|WP_057878253.1|4699_4963_-|type-II-toxin-antitoxin-system-PrlF-family-antitoxin
MSAGNVTKVSSKITSKNQITIPKTVRELLKVRSTDTIEWQIEPNGKVMIVRSKPDLWQLVDEQEKKFGNLSTIEVDWGKDVESEDFD
>NZ_CP014931.1|WP_065937807.1|5040_5628_+|site-specific-integrase
MQQVVLPIKDSNILKEVQDTLLNNFKAGRRNYTIFQVGKATLLRVSDVMCLKQNDIFNPDGSIKQNAFIHDKKTGKPNTLYLKPVQTDLLLYRQWLLDHKLQSEWLFPSIQHPERHITEKQFYKIMSKVGDLLSINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLAYLGLDQASTETMLDQIDFG
>NZ_CP014931.1|WP_010015136.1|5982_6195_+|hypothetical-protein
MLGVIKMDEKKVLKPIDEMLADPWQVDIQELFEASVNEPDEIKKNLYDSLYTYILQKRQEDIINRPGFVI
>NZ_CP014931.1|WP_065937808.1|6915_7851_+|replication-initiation-protein
MSNELIKYDPELNTIPLRKFTPIEMNLFFSIISRMRDKGDQTVRFSFEQLKDLSNYKPTANNRFEDDIQRTYEKLMGLHFGRRSKSGLNREMFVMFTKFRIVGEADSPYIDIEVYKDALPLLNNLDTWVRYALAEFRDLRSSYAKTAFRLLKGFRTTGYAFLSKEDFFELLDIPKSYWKKPGDVDRYVLKPIREELTPLFRGLTVRKKYGKGRGKPVIGYSFTWKPEKKDANDFSQGQFQDERQKLFNIQHNGELTEQEKWRAIDKVKGLTLGSTEKQALAVKQAEHDKKIRDQARKEALAELRKGFENNA
>NZ_CP014931.1|WP_065937809.1|8024_8624_+|DUF536-domain-containing-protein
MGKTIRQISEELKLSKQAINQRISSINGFRSKHTHKVKNHLEIDEQGVKMLANFDKQTRKYQQKNRQSRQVENEKQDKKKTNIDDVLLKQLNVKDQQIANLQQALDQQQKLQMATVAENHQLKEHVQKLSGLLEPSSSTQKQQSKDKDDALSNNTNASHSKDKNDKQNGNKVAEYGNRQKKAFKNTVNNSWWNFLKKKE
>NZ_CP014931.1|WP_065937810.1|8977_9997_+|hypothetical-protein
MNNKYNAAPTQTGFQYQTLCAVYFFLLKIESIACLNNEGQDDFDIVFQDGSKKFFQVKEIQNSTNKLTSQKIKDSLKTFTADVTAESHITELGIVTNTSNPFGKSSRPGFSNSYFSISYTNLTPAEKKQIDNGNSSSSESKLTTSDLEKITITKIHYDGNDTDSKYQELLNKAKRFIGPTEILESQIDALLNEWLLTFERTAQNPKVIITKERFTSITELVALDSPNFDDFFESFDDDSNEYYIKNEYRDYLEKVCLDFQIRSEIDNNFRNYQLENRLNEPSRKKRQKNFIEKYAPTLGTKIGLQNSSKDISISRLIIWLLIKQVSLCHSIEERVNIDY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014931_1	1.1\|65\|28\|NZ_CP014931\|CRISPRCasFinder	65-92	28	NZ_CP014931	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-7, complete sequence	65-92	0	1.0
NZ_CP014931_1	1.1\|65\|28\|NZ_CP014931\|CRISPRCasFinder	65-92	28	NC_011839	Lactobacillus gasseri plasmid pLgLA39, complete sequence	13148-13175	4	0.857
NZ_CP014931_1	1.1\|65\|28\|NZ_CP014931\|CRISPRCasFinder	65-92	28	CP031017	Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence	6899-6926	5	0.821

1. spacer 1.1|65|28|NZ_CP014931|CRISPRCasFinder matches to NZ_CP014931 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-7, complete sequence) position: , mismatch: 0, identity: 1.0

gcgaggcgttgtcaacggacttatgcgg	CRISPR spacer
gcgaggcgttgtcaacggacttatgcgg	Protospacer
****************************

2. spacer 1.1|65|28|NZ_CP014931|CRISPRCasFinder matches to NC_011839 (Lactobacillus gasseri plasmid pLgLA39, complete sequence) position: , mismatch: 4, identity: 0.857

gcgaggcgttgtcaacggacttatgcgg	CRISPR spacer
gagcggcctcgtcaacggacttatgcgg	Protospacer
* * *** *.******************

3. spacer 1.1|65|28|NZ_CP014931|CRISPRCasFinder matches to CP031017 (Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence) position: , mismatch: 5, identity: 0.821

gcgaggcgttgtcaacggacttatgcgg	CRISPR spacer
gagggctgttgtcaacgaacttatgcgg	Protospacer
* *.* .**********.**********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP014926

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014926_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014926_1

8082-8236

Orphan

Consensus_repeat	Method
AATCCCTTGATACAAGCAGACTTCCGAAAAACGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014926_1

>merge|NZ_CP014926|1|8082-8236|CRISPRCasFinder
AATCCCTTGATACGAGCAGACTTCCGAAAAACGGAAATCAGCATGAGACCGTTGAATCCCTTGATACAAGCAGACTTCCGAAAAACGGAAATCAGCATGAGACCGTTGGTAACATATCCCAATCCCTTGATACAAGCAGACTTCCGAAAAACGGA

>NZ_CP014926|1|1|8082-8236|CRISPRCasFinder
AATCCCTTGATACGAGCAGACTTCCGAAAAACGGA	AATCAGCATGAGACCGTTGAATCCCTTGATACAAGCAGACTTCCGAAAAACGGAAATCAGCATGAGACCGTTGGTAACATATCCC
AATCCCTTGATACAAGCAGACTTCCGAAAAACGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014926.1\|WP_065937719.1\|3916_4756_+\|PD-(D/E)XK-nuclease-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|378917
NZ_CP014926.1\|WP_065904004.1\|1528_1777_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_CP014926.1\|WP_082918593.1\|9306_9711_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014926.1\|WP_065937722.1\|9035_9317_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_CP014926.1\|WP_014940867.1\|17588_18173_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP014926.1\|WP_054712564.1\|5703_6489_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP014926.1\|WP_156770509.1\|2555_2702_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014926.1\|WP_065904113.1\|3147_3981_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP014926.1\|WP_054712561.1\|6543_6747_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014926.1\|WP_065900954.1\|15158_16541_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP014926.1\|WP_065937717.1\|678_1401_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234688
NZ_CP014926.1\|WP_063723324.1\|14335_14599_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014926.1\|WP_021353390.1\|13685_13775_-\|putative-holin-like-toxin	unknown	unknown	unknown
NZ_CP014926.1\|WP_056986590.1\|12922_13633_+\|acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|341211
NZ_CP014926.1\|WP_065937718.1\|1808_2489_+\|antA/AntB-antirepressor-family-protein	unknown	unknown	gnl\|CDD\|369825
NZ_CP014926.1\|WP_065937723.1\|11226_12903_+\|acetolactate-synthase-AlsS	unknown	unknown	gnl\|CDD\|236312
NZ_CP014926.1\|WP_056986588.1\|10485_10914_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP014926.1\|WP_065937720.1\|4850_5693_+\|DUF4373-domain-containing-protein	unknown	unknown	gnl\|CDD\|379546
NZ_CP014926.1\|WP_065904117.1\|2837_3155_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014926.1\|WP_056986587.1\|9800_10481_-\|noncanonical-pyrimidine-nucleotidase,-YjjG-family	unknown	unknown	gnl\|CDD\|162788

Protein	Function_ID	Function_description	E-value
NZ_CP014926.1\|WP_065937719.1\|3916_4756_+\|PD-(D/E)XK-nuclease-like-domain-containing-protein	gnl\|CDD\|378917	pfam12684, DUF3799, PDDEXK-like domain of unknown function (DUF3799). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 265 and 420 amino acids in length. It appears that these proteins are distantly related to the PDDEXK superfamily and so these domains are likely to be nucleases. This family has a C-terminal cysteine cluster similar to that found in pfam01930.	4.96851e-95
NZ_CP014926.1\|WP_065904004.1\|1528_1777_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	2.00665e-15
NZ_CP014926.1\|WP_065937722.1\|9035_9317_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	4.9462e-13
NZ_CP014926.1\|WP_014940867.1\|17588_18173_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.22341e-44
NZ_CP014926.1\|WP_054712564.1\|5703_6489_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.71649e-30
NZ_CP014926.1\|WP_065904113.1\|3147_3981_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	2.48944e-44
NZ_CP014926.1\|WP_065900954.1\|15158_16541_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	7.02444e-172
NZ_CP014926.1\|WP_065937717.1\|678_1401_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.0623e-22
NZ_CP014926.1\|WP_065937718.1\|1808_2489_+\|antA/AntB-antirepressor-family-protein	gnl\|CDD\|369825	pfam08346, AntA, AntA/AntB antirepressor. In E. coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the bacteriophage 933W.	1.29176e-33
NZ_CP014926.1\|WP_065937723.1\|11226_12903_+\|acetolactate-synthase-AlsS	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
NZ_CP014926.1\|WP_056986587.1\|9800_10481_-\|noncanonical-pyrimidine-nucleotidase,-YjjG-family	gnl\|CDD\|162788	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family. This HAD superfamily includes including YjjG from E. coli and YfnB from B. subtilis. YjjG has been shown to act as a house-cleaning enzyme, cleaving nucleotides with non-canonical nucleotide bases. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).	6.78083e-70
NZ_CP014926.1\|WP_065937720.1\|4850_5693_+\|DUF4373-domain-containing-protein	gnl\|CDD\|379546	pfam14297, DUF4373, Domain of unknown function (DUF4373). This domain is found in bacteria, eukaryotes and viruses, and is approximately 90 amino acids in length.	4.14047e-27
NZ_CP014926.1\|WP_056986590.1\|12922_13633_+\|acetolactate-decarboxylase	gnl\|CDD\|341211	cd17299, acetolactate_decarboxylase, alpha-acetolactate decarboxylase. alpha-acetolactate decarboxylase (AldB, E.C. 4.1.1.5) converts acetolactate ((2S)-2-hydroxy-2-methyl-3-oxobutanoate) into acetoin ((3R)-3-hydroxybutan-2-one) and CO(2). Acetoin may be secreted by the cells, perhaps in order to control the internal pH. AldB may function as a regulator in valine and leucine biosynthesis and in catalyzing the second step of the 2,3-butanediol pathway. The structure of this domain displays an alpha-beta-beta-alpha four layer topology, with an HxHxxxxxxxxxxH motif (x could be any residue) that coordinates a zinc ion.	2.66197e-100
NZ_CP014926.1\|WP_056986588.1\|10485_10914_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	6.31267e-10

>NZ_CP014926.1|WP_054712561.1|6543_6747_+|hypothetical-protein
MAFEDKMNQLKNSMSSKPAKNEPTAPRISKSYTLKQDIANELTRRAKEKELTASRYLEKLLKKEFNL
>NZ_CP014926.1|WP_054712564.1|5703_6489_+|ParA-family-protein
MKIITFSAIKGGVGKTTLTFNYGEWLSSKGYNVLMIDSDHQCSLTQTYDIYKDHDTLANVFTKDNEKVEIIELHKNLSIIPASMNLDTINNDLQTRANKELLMYMWFSDNYNELKKFNYVLIDTHPDFSTITQNMIVISDFVFSPIEPSEYGFISKSNLELRMKQLKQDVINVETRQSFVTAELKFIGNRIKHNTKSSHEFVEQMKKDPRTIALIPEREIFNKTTLNHKPLIKMEQENNSTQRAKEFFENIDNIFETFAKQ
>NZ_CP014926.1|WP_065937720.1|4850_5693_+|DUF4373-domain-containing-protein
MARPIKEGLDYFPLNTDIIHDIKIRKIMRSNGPQSIAVLLDLLGNIYGDHGYYMQWDDDVRFLVADDVGISEAAVDELVSKAIQVDFFDEKLFKKYSILTSKGIQKRYQKASKRKSGFCIQKPYNLIVNVHNNPPQCEVNDDNNPTASEVSDAESTRKESKVKERKEKESKKEITENDTLMDFIDFWDEYPKKEKKQDASKAYYEARLGGASVDELLQGAKRYAKFIKATHTFSAMASNWLDDKRWSDEYDMTPHQQANSRGGFVASQSNSSFDDSDIPF
>NZ_CP014926.1|WP_065937719.1|3916_4756_+|PD-(D/E)XK-nuclease-like-domain-containing-protein
MTTSISPTKNNKVSSKPLTKSNYYDRWTDDIYLSPTVYKRYQACEAEALAEQAGQWAQMDATALLVGNYLHSYFESPAAHEAFIEEHKDELKSSRKPYKLLKPYQQAEMMIKTLDEDETFQQFYQGDKEVIVTGKIEGVPWKGKIDCLNLDNNYFIDLKTTRDLHMKYWDTDEHKYVPFVTKYNYQLQMAVYRELIKQTFGIDCTPYIVGVTKQDPPDKAVLSIPDEQLGWALDDVKAGQQHILDVMHGNVEPTRCEQCDYCRSTKTLGDIISIEDLVD
>NZ_CP014926.1|WP_065904113.1|3147_3981_+|phage-recombination-protein-Bet
MSEGILSTPIIYKANGEEVKLSGQMVKQYLVRGNGNVTDQEIVMFMNLAKYQHLNPFLNEAYLVKFGNSPASIITSKEAFMKRANSNPHYKGIKAGIMVARGDEIVQLNGAVKLPKDVLIGGWATVKRDDREDTHIEIAFNEFSKAQATWKSMPSNMIRKSAMVNALREAFPETLGDMYTEDDKNLNDHMNARQTVQATESTPSNVKDIISKAVSETVKKTQKAKSVDDKPTAETQAKPDSAKEPEPDIVNKGGDPHDDQYLSDEEQQSIFEAINEK
>NZ_CP014926.1|WP_065904117.1|2837_3155_+|hypothetical-protein
MISIAWHKWEYLDKQAVRKDTEGYELADFSYYWQVDDATFILDDVDDINTYLEPYGESGYDTYAELVPALVTTFPEVSYVIYVQDNIFCKDWHEEMKKTGGQPHE
>NZ_CP014926.1|WP_156770509.1|2555_2702_+|hypothetical-protein
METLGFGIIVLIVVVTMLAGGIYVRYQKGDVKREFKNFTDDFFGTQGK
>NZ_CP014926.1|WP_065937718.1|1808_2489_+|antA/AntB-antirepressor-family-protein
MNELIKTFKQSNGSIAVDGRDLHNFLEVKERYNDWFKDMQKYGFTENVDFISFTGKRVKPQGGRPQVNHALTLDMAKELSMIQRTKKGKQARQYFISMEKQAQLPQSPAERLQLVMQVTNDQTQRIEKIDSRVTDLEDNQFLAPGEYNYLSKAISKTINNFINAQQTGLNMKQRRELYKDIHGGVKKITGIQTRSQLRKGDFQNVQDYVSNWVPSTATLALIKQLA
>NZ_CP014926.1|WP_065904004.1|1528_1777_+|helix-turn-helix-transcriptional-regulator
MKNNVRVIREYKKISQTKLAELAGISRPGLSTIENGHKQASLDTAWKIANALNVTVDDVFFNQNVRLVIQGTEHSDKITASS
>NZ_CP014926.1|WP_065937717.1|678_1401_-|XRE-family-transcriptional-regulator
MTGLGRYLSEIRNKRHLSLRDLAKQSEIYDVPISHSTLWAIEKGKNSRGNVPHPSPNQLKTISNVYHVNYEKLMELAGYAPVPQNVRVSPTSDGASITADVGWKTSNEPLDVYGEITAGLPTFADEHIIGQTIIPDDLIDKYGRDNLFALQVDGDSMSKVIAPGFIAVFAKDCEVQNGDICAVLVDGENATLKRFKETSRAVILEPESFNPIYKPLIFPKGIERDFRILGKYVFATSLLQ
>NZ_CP014926.1|WP_065937722.1|9035_9317_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MAVKEKQRVQVKIDKDLADDTEAVLSELGLNPTTAINMFYKRIVANGALPFNASLSEEERANLRFLKATEGTPVTEFKDAKEVSDWLNDPDED
>NZ_CP014926.1|WP_082918593.1|9306_9711_+|hypothetical-protein
MRTNDLVSLYVSFVETNGGKSRPVFIRRVSEQTVEAFKITSQYENKSAYIKQQYYPIQDWQSAGLKKPSWVDLGNIYRFPKAGLNFKEIGHLSKLDQNKILDFTLDLKSKRRGKGQKIIQQRSSKRKHKEFKNS
>NZ_CP014926.1|WP_056986587.1|9800_10481_-|noncanonical-pyrimidine-nucleotidase,-YjjG-family
MNYPTLLFDVDDTLLNFQASEHQAIQKLFNQINRPLTSKAYQNYHQMNEGLWRRLERGEISRETLLNTRFQIFFSQYGLDVDGVAYEKQYRQFLSAGHDPIPNAVQLLNDLSHHHQLYIVTNGIAATQKRRLRESGMAKYITKMFVSETVGHPKPEPQFFDYVAESIDHFDKQQSLVVGDSLTSDILGAANYGLDSVWFNPAHQQNSTSTKPTYEIAELMELENIV
>NZ_CP014926.1|WP_056986588.1|10485_10914_-|MarR-family-transcriptional-regulator
MKDIGYLAQDISILHRQYYKDTGKQFKKHHLNPTAACILLTVRDHPDINQNQVAKSLVIDKGLATREIKKMEQLDYLTKTSGTGKAINLNLTGTGKKIVPIINDIRKEWWQSRFSETGISPDSPLVAAIEKVVKVITSDAKE
>NZ_CP014926.1|WP_065937723.1|11226_12903_+|acetolactate-synthase-AlsS
MSNEKRGSQALIQTMINQGVKYVFGIPGAKVDQLFEDLTYSDDPRTPKLIVARHEQNAAFIAAGIGRLTGKPGVVATTSGPGVSNLVTGLITATTEADPVVALGGQVPRDDLARLTHQSIPSKELMANATKSSVEVQDANNLSETFANAYQSAISPKAGAAFISLPADVLSDKVNRPEVKPLTKHENGRAADATLDQIIELLKHAKLPVILAGMRASTPENTAAIRSLLKKFPLPVVETYQGAGIISHELEDDFFGRVGLFRNQIGDTLLKRSDLVVSIGYDPVEYEARNWNVDRTGKVVNIDDVAPEISKDYQPDVIVVADIAGSLDALADRLPGEFKLSADTSKTLDNLRQEFDSENKVPTDVKPGTVHPLAIVRALQERVDDDTTVTVDVGSHYIWMARHFRIYKPRHLLFSNGMQTLGVSLPWAIAAALVRPGKPVVSVSGDGGFLFSGQELETAVRLNLNIVQLIWNDGYYDMVKFQEIAKYGKPAGVQFGPVDYVKYAESFGARGLRVTSPDDLGTTLDQAFKTKGPVIVDIPVDYSDNIKLKSALLKDILN
>NZ_CP014926.1|WP_056986590.1|12922_13633_+|acetolactate-decarboxylase
MAKHATLYQHGTLALLVPGLLTGTITMADLLKHGDTGIGTGDGLDGELIILDGKPYQVDHSGKVNVVPKSFTLPFANSHFARYAPLAELENVDQDELDKQMLSLSRAANTFFSVEVKGTFANIKTRAVEKSTPPYDTLAKTAENQSIFTRDQIDGTLLGYYSPQLFDGAAVAGFHEHFLSDDHSFGGHVLGFHLVKGEVTYQLFDTLEQHLPVNNKAYMAHDFSKDDILGSIHKAE
>NZ_CP014926.1|WP_021353390.1|13685_13775_-|putative-holin-like-toxin
MSVFQTLSLMLLFGTFLIALLSYIDKHHK
>NZ_CP014926.1|WP_063723324.1|14335_14599_+|hypothetical-protein
MKLDNSIQQMITKDLVQKMITSMGGQSKSSISNIDSKTLTVLEQLYRELNFRPCSLATSLVHTNRKNDLIDELIRLLGYQSVMSLCN
>NZ_CP014926.1|WP_065900954.1|15158_16541_+|group-II-intron-reverse-transcriptase/maturase
MQQPQNTEKADRRRTVGLEAQEQVGVRSTDSGENTMMNGTKFQELVLDRNNLNEAYLRVCRNKGAAGLDGMTVDELLPYLRKHKQELLQALQNETYRPRPVKRVEIPKPNGGKRKLGIPTVIDRLVQQAMAQVMVPTFERVFSDNSFGFRPNRSAKDAIDRVVQFYNQGYHYVVDLDLKAYFDTVNHDLLIKFIEQYITDPWILHLIRRFLTSGVMNGGLFERSDKGTPQGGPLSPLLANIYLNELDKLLTSRGHKFVRYADDCNIYVRSKRAGERVLTNVTRFLEGDLKVTVNEDKTSVSSPLRAKFLGFSLGVGRGGAYARPAWQAKQRIKSALRKMTKRNRGVSLNLVFNEIHQKMRGWLQYYSVGKMTNFIRHLDEWLRARIRQYIWKQWKKLKTKVNHLVKLGLSGTSAYTMANTRKGYWRTAHSKTLTYTLTNKRLERLGLINMSKTLQSIQSA
>NZ_CP014926.1|WP_014940867.1|17588_18173_+|recombinase-family-protein
MAKIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGANTNRPELQKMLAYIREGDIVMVTELDRLGRNNHDLTKIMNSIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGISLAKQQGKYHGRKPQYAEDDPRLLHAFKLYQNGMSDVDVARNTGIKRTTFIRYRKKFSVYR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP012282	Pediococcus damnosus strain TMW 2.1533 plasmid pL21533-7, complete sequence	9364-9448	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP014926	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-2, complete sequence	8117-8201	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP014935	Pediococcus claussenii strain TMW 2.53 plasmid pL253-2, complete sequence	4405-4489	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP014938	Pediococcus claussenii strain TMW 2.54 plasmid pL254-2, complete sequence	4405-4489	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP012292	Pediococcus damnosus strain TMW 2.1535 plasmid pL21535-4, complete sequence	9364-9448	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP019747	Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-4, complete sequence	36397-36481	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP014885	Lactobacillus backii strain TMW 1.1991 plasmid pL11991-4, complete sequence	32761-32845	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP014877	Lactobacillus backii strain TMW 1.1989 plasmid pL11989-4, complete sequence	20125-20209	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP014628	Lactobacillus backii strain TMW 1.1988 plasmid L11988-4, complete sequence	11513-11597	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP019738	Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-4, complete sequence	33714-33798	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP018797	Lactobacillus parabuchneri strain FAM21731 plasmid pFAM21731.1, complete sequence	57121-57205	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP014903	Lactobacillus backii strain TMW 1.2002 plasmid pL12002-4, complete sequence	56863-56947	25	0.706
NZ_CP014926_1	1.1\|8117\|85\|NZ_CP014926\|CRISPRCasFinder	8117-8201	85	NZ_CP014895	Lactobacillus backii strain TMW 1.1992 plasmid pL11992-5, complete sequence	20198-20282	25	0.706

1. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP012282 (Pediococcus damnosus strain TMW 2.1533 plasmid pL21533-7, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

2. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP014926 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-2, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

3. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP014935 (Pediococcus claussenii strain TMW 2.53 plasmid pL253-2, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

4. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP014938 (Pediococcus claussenii strain TMW 2.54 plasmid pL254-2, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

5. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP012292 (Pediococcus damnosus strain TMW 2.1535 plasmid pL21535-4, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

6. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP019747 (Lactobacillus brevis strain TMW 1.2111 plasmid pl12111-4, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

7. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP014885 (Lactobacillus backii strain TMW 1.1991 plasmid pL11991-4, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

8. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP014877 (Lactobacillus backii strain TMW 1.1989 plasmid pL11989-4, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

9. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP014628 (Lactobacillus backii strain TMW 1.1988 plasmid L11988-4, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

10. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP019738 (Lactobacillus brevis strain TMW 1.2108 plasmid pl12108-4, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

11. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP018797 (Lactobacillus parabuchneri strain FAM21731 plasmid pFAM21731.1, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

12. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP014903 (Lactobacillus backii strain TMW 1.2002 plasmid pL12002-4, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

13. spacer 1.1|8117|85|NZ_CP014926|CRISPRCasFinder matches to NZ_CP014895 (Lactobacillus backii strain TMW 1.1992 plasmid pL11992-5, complete sequence) position: , mismatch: 25, identity: 0.706

aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	CRISPR spacer
aatcagcatgagaccgttgaatcccttgatacaagcagacttccgaaaaacggaaatcag	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

678 : 6489

uncultured_Caudovirales_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065937717.1\|678_1401_-	XRE family transcriptional regulator	A0A2H4JFP1	uncultured_Caudovirales_phage	4.9e-15	43.6
WP_065904004.1\|1528_1777_+	helix-turn-helix transcriptional regulator	S5M643	Brevibacillus_phage	4.1e-06	41.5
WP_065937718.1\|1808_2489_+	antA/AntB antirepressor family protein	A0A1P8BKZ9	Lactococcus_phage	2.5e-45	43.4
WP_156770509.1\|2555_2702_+	hypothetical protein	NA	NA	NA	NA
WP_065904117.1\|2837_3155_+	hypothetical protein	NA	NA	NA	NA
WP_065904113.1\|3147_3981_+	phage recombination protein Bet	A8ATK8	Listeria_phage	5.2e-53	50.9
WP_065937719.1\|3916_4756_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A0P0IZH9	Lactobacillus_phage	3.4e-68	48.0
WP_065937720.1\|4850_5693_+	DUF4373 domain-containing protein	A0A0H4TKJ7	Bacillus_phage	1.3e-19	40.9
WP_054712564.1\|5703_6489_+	ParA family protein	A0A1V0DZZ0	Clostridioides_phage	3.9e-18	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_CP014927

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP014927_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP014927_1

35481-35637

Orphan

Consensus_repeat	Method
AAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP014927_1

>merge|NZ_CP014927|1|35481-35637|CRISPRCasFinder
AAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGTTCAGCATGACACCGTTGAAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGTTCAGCATGACACCGTTGAAAAGGACGCTCAAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGT

>NZ_CP014927|1|1|35481-35637|CRISPRCasFinder
AAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGT	TCAGCATGACACCGTTGAAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGTTCAGCATGACACCGTTGAAAAGGACGCTC
AAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP014927.1\|WP_065937751.1\|37978_40039_+\|MobA/MobL-family-protein	unknown	unknown	gnl\|CDD\|367473
NZ_CP014927.1\|WP_002816285.1\|32689_32941_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP014927.1\|WP_054712831.1\|31078_31477_+\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|223317
NZ_CP014927.1\|WP_003660162.1\|33196_34246_+\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_CP014927.1\|WP_134787804.1\|26805_27593_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP014927.1\|WP_003625713.1\|34248_34524_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014927.1\|WP_003555660.1\|37499_37727_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014927.1\|WP_156652757.1\|31861_32596_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP014927.1\|WP_065868917.1\|31470_31701_+\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|184571
NZ_CP014927.1\|WP_065937750.1\|37198_37477_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014927.1\|WP_065937746.1\|25015_25225_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014927.1\|WP_065937747.1\|25244_25526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014927.1\|WP_065937748.1\|29481_30768_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP014927.1\|WP_010620892.1\|36897_37083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP014927.1\|WP_054712998.1\|36569_36851_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102

Protein	Function_ID	Function_description	E-value
NZ_CP014927.1\|WP_065937748.1\|29481_30768_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP014927.1\|WP_065937751.1\|37978_40039_+\|MobA/MobL-family-protein	gnl\|CDD\|367473	pfam03389, MobA_MobL, MobA/MobL family. This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilisation proteins, which are essential for specific plasmid transfer.	1.85145e-105
NZ_CP014927.1\|WP_156652757.1\|31861_32596_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.43871e-124
NZ_CP014927.1\|WP_134787804.1\|26805_27593_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	6.26096e-20
NZ_CP014927.1\|WP_002816285.1\|32689_32941_-\|IS3-family-transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.47634e-08
NZ_CP014927.1\|WP_054712831.1\|31078_31477_+\|CrcB-family-protein	gnl\|CDD\|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	9.12825e-13
NZ_CP014927.1\|WP_003660162.1\|33196_34246_+\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	4.58776e-51
NZ_CP014927.1\|WP_065868917.1\|31470_31701_+\|CrcB-family-protein	gnl\|CDD\|184571	PRK14214, PRK14214, fluoride efflux transporter CrcB.	1.21895e-06
NZ_CP014927.1\|WP_054712998.1\|36569_36851_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	1.22624e-10

>NZ_CP014927.1|WP_003625713.1|34248_34524_+|hypothetical-protein
MGKVKTLNVRLNPEKIVDKEILDYFDKSLIPKTTLVKTALIHEIERLKAQGDPYVKDELKAPEAPKNSTESPSDSKERLQGGFNAFSDNDI
>NZ_CP014927.1|WP_003660162.1|33196_34246_+|ParM/StbA-family-protein
MDIFSLDLGNKQTKLKSSKAEYVLPSRYLNQADMPMSVGNSTMNNDLHTYSVPFSDDKYVWGRDIDGLHLDEYLADTIMYGARYDSEAFKLLANFALGLLASDFKAAKDQVLEVVVTAGLPTGDYADQGQLKALLKVLEGQHQVTIDDKIVTVRVRKVYILPQPIGTLYNELLDDEGFIQNKDLLDEKVGIVDVGGGTILIDTILNFELSGKNRHQFNTGVNDLYEAIANGINGDTSLYQLEKDLRKGNQQHHWSYRFSKNRQDDITDLVCKEIDRFTRRLVANVTSTLKNLDSIDTLFFTGGGANLLNQKILNTTFTNAVIVKNTEVANVNGFYKYGLSQQAQNEGSK
>NZ_CP014927.1|WP_002816285.1|32689_32941_-|IS3-family-transposase
MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK
>NZ_CP014927.1|WP_156652757.1|31861_32596_-|IS3-family-transposase
MFAEFKQRYGVMKIHHELNLELQPLQRRCSLRRISRLMKELDIHSVTVNKWKAASASKTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYLSTIMDLHSRRIIGYSFSKKMATDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFENYETAAAVLFEYVHAFYNRKRIHSSLGYQTPLQVEIATLTSQMAA
>NZ_CP014927.1|WP_065868917.1|31470_31701_+|CrcB-family-protein
MVMLVTLGAGVGAVMQYVLTQLGKNWWTWVSVATLVINASGAFLAGFLAMCALQQAWSLLLLTGVWWVHDFFHIHD
>NZ_CP014927.1|WP_054712831.1|31078_31477_+|CrcB-family-protein
MQRLRYQDILAMFIGGCFGGIACWEIGLWLNDADTMLGTTAVNLIGRFLLEFVTYGLAVYIDLPGWLILALGTGFVGAFTTFSTMVPNLYKNVGESPVYEIRIFLLELLVGLGAAFSGYLCAEAWGRRRQTW
>NZ_CP014927.1|WP_065937748.1|29481_30768_-|phosphopyruvate-hydratase
MSVVIESVKAREIFDSRGNPTVEADVNLSDGTLGRAEVPSGASTGEKEAVELRDGGDRLQGKGVSKAVANVNTEINKALHGTDPFNQAHIDQLMIDLDGTPNKARLGANAILGVSMATARAAANALHTPLYRYLGGTDLELPQTFHNVINGGEHADNGIDIQEFMITPVDRSSFRDGFEKIANTYHTLKKVIEEAGYTTGLGDEGGFAPDLKNSEDALQMLHDAIIKAGYTPGKEIAIAFDAAASYFYNRDTKNYDFEGKTYTPAELGEYYIHLLDKFPEIISIEDPYGEEDWGHFADFTKKYGDRVQLVADDPVCTNPALIKDAIKRGMANSILIKLNQIGTVTETLEAIRLARKNGYTTMMSHRSGETGDTFVADFTVATNVAQLKSGAPARSERVEKYNQLLRIEEELGADGTRLAHFPDSVDFD
>NZ_CP014927.1|WP_134787804.1|26805_27593_+|IS5-family-transposase
MKNYPSNITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVFKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKRHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDIASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
>NZ_CP014927.1|WP_065937747.1|25244_25526_+|hypothetical-protein
MPNQYEKLVEQQARLKQKIEQEDFKLRQSKYYENRQARKARSRRLIQKGALLEKYFQADNLSVEQTEELLKTFAGYVNAHKPNEFKNDQPNNN
>NZ_CP014927.1|WP_065937746.1|25015_25225_+|hypothetical-protein
MSQSNLEKQEAKLKQLNQNIKAEKNKIEQNLGKQIIRSANLDYGTLTTPQIKMIAKKVAAFLNQAQNNR
>NZ_CP014927.1|WP_054712998.1|36569_36851_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MAVKEKKRVQVQIDKELADNTEAVLSQLGLNPTTAINMFYKRIVADAALPFKPALSEAERANLSLLKATKETPVTEFKDAKKVADWLNDPDED
>NZ_CP014927.1|WP_010620892.1|36897_37083_+|hypothetical-protein
MKDTITINDFFEIAKETDLKDLLDKSLHEPDPEKRKVYDALYTYFLDKRQDEVIKRKDFVR
>NZ_CP014927.1|WP_065937750.1|37198_37477_-|hypothetical-protein
MSNQYKKLVEQQARLKQKIEREDFKLRQSKYYKNRQARKARSRRLIQKGALLEKYFQANNLSVEQTEELLKIFADYVNAHKPDKLKNDQPNN
>NZ_CP014927.1|WP_003555660.1|37499_37727_-|hypothetical-protein
MIGGIVMSQSNLEKQEAKLKALNQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKQFSEFLKVKSVDH
>NZ_CP014927.1|WP_065937751.1|37978_40039_+|MobA/MobL-family-protein
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSVMPESFILTPKNAPEWASDREQLWNEVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQKNFVDQGMVADVAIHRDHPDNPHAHVMLTNRPFNPDGTWGQKTKTEYILDSHGNKTKTPAGNVRNRKIWLVDWDKKEKITEWRHNWAVSVNQVLEQKNIPDRISEKSFENQGIDEVPTQHEGINSKRHERKEFNQQVKDYRKAKASYKNNQEKAINRGHLDSLSKHFSFNEKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELNFEQTTQAERRELIKETNSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLLMQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPIEQQKITRAVKDLRTIMAVKQVIQTQYQEVLRRAFPKGDLDGLPLTKQEQAYTAVMYYDPTLKPLKVETMEQWQSNPPQVFSTQEHQLGLAYLSGQLSLDQLENHHLQRVLKHDGTKQLFFGECKVDPTIKNSQIEKIQKQLKGQQAKDDQYRKANMGHYQPLNYKPVSPDYYLKTAFSDAIMTVLYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHEDGGMHL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP014927_1	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	NZ_CP014932.1	38859-38941	23	0.723
NZ_CP014927_1	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	NZ_CP014928.1	27242-27324	23	0.723

1. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to position: 38859-38941, mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

2. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to position: 27242-27324, mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP014927_1	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	NZ_CP014927	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence	35518-35600	23	0.723
NZ_CP014927_1	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	NZ_CP014928	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence	27242-27324	23	0.723
NZ_CP014927_1	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	NZ_CP014932	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence	38859-38941	23	0.723
NZ_CP014927_1	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	NZ_CP014918	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-3, complete sequence	5543-5625	23	0.723
NZ_CP014927_1	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	NC_022114	Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence	579-661	23	0.723
NZ_CP014927_1	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	NZ_CP019324	Lactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence	27857-27939	23	0.723
NZ_CP014927_1	1.1\|35518\|83\|NZ_CP014927\|CRISPRCasFinder	35518-35600	83	NZ_CP031201	Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_C, complete sequence	6996-7078	24	0.711

1. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to NZ_CP014927 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-3, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

2. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to NZ_CP014928 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

3. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to NZ_CP014932 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-8, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

4. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to NZ_CP014918 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-3, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

5. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to NC_022114 (Lactobacillus paracasei subsp. paracasei 8700:2 plasmid 1, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

6. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to NZ_CP019324 (Lactobacillus allii strain WiKim39 plasmid pWIKIM01, complete sequence) position: , mismatch: 23, identity: 0.723

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
************************************************************

7. spacer 1.1|35518|83|NZ_CP014927|CRISPRCasFinder matches to NZ_CP031201 (Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_C, complete sequence) position: , mismatch: 24, identity: 0.711

tcagcatgacaccgttgaaacccttgctgcgcgcagaactgtaaattctacagttcagca	CRISPR spacer
tcagcatgacaccgttgaatcccttgctgcgcgcagaactgtaaattctacagttcagca	Protospacer
******************* ****************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_CP014925

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7189

Lactobacillus_phage(66.67%)

integrase

attL 4251:4264|attR 17039:17052

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156770510.1\|402_552_+	hypothetical protein	NA	NA	NA	NA
WP_065904102.1\|544_907_+	hypothetical protein	NA	NA	NA	NA
WP_065904100.1\|903_1098_+	hypothetical protein	NA	NA	NA	NA
WP_065904097.1\|1097_1538_+	hypothetical protein	D6PSV5	Lactobacillus_phage	1.9e-33	54.6
WP_065904095.1\|1518_1710_+	hypothetical protein	D6PSV7	Lactobacillus_phage	3.3e-27	91.9
WP_065904091.1\|1753_2182_+	transcriptional regulator	E9LUP5	Lactobacillus_phage	1.3e-52	70.9
WP_065904088.1\|2662_3184_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	1.4e-59	68.2
WP_065904087.1\|4178_4544_-	hypothetical protein	NA	NA	NA	NA
4251:4264	attL	NA	NA	NA	NA
WP_065904085.1\|4556_5144_-\|integrase	site-specific integrase	D2XR58	Bacillus_phage	8.3e-21	33.2
WP_001748109.1\|5229_5493_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001748110.1\|5486_5831_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_065937709.1\|5941_7189_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	5.1e-36	29.8
17039:17052	attR	NA	NA	NA	NA

DBSCAN-SWA_2

16138 : 23794

Bacillus_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_065904047.1\|16138_16861_+	hypothetical protein	A0A172JI54	Bacillus_phage	8.1e-26	36.1
WP_191982313.1\|16818_17049_+	DUF2726 domain-containing protein	A0A1B0WKK5	Flavobacterium_phage	3.2e-13	50.0
WP_065904039.1\|17705_18260_+	hypothetical protein	F7V9F0	Lactobacillus_virus	3.8e-15	38.5
WP_065904035.1\|18259_18532_+	hypothetical protein	NA	NA	NA	NA
WP_065900954.1\|19047_20430_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.3e-28	30.8
WP_065904029.1\|20934_21168_-	hypothetical protein	NA	NA	NA	NA
WP_065904027.1\|21160_21949_-	ParA family protein	F0PIG8	Enterococcus_phage	4.4e-33	35.8
WP_065937711.1\|22010_22457_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-40	56.9
WP_065903756.1\|22561_23794_+\|transposase	transposase	A0A286QQE5	Streptococcus_phage	1.5e-51	35.8

DBSCAN-SWA_3

29122 : 37849

Lactobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083215608.1\|29122_29956_-	DUF4428 domain-containing protein	O48432	Lactobacillus_phage	2.5e-18	28.5
WP_065904008.1\|30006_30729_-	XRE family transcriptional regulator	A0A2H4JFP1	uncultured_Caudovirales_phage	4.0e-17	41.1
WP_065904004.1\|30857_31106_+	helix-turn-helix transcriptional regulator	S5M643	Brevibacillus_phage	4.1e-06	41.5
WP_065904001.1\|31137_31818_+	antA/AntB antirepressor family protein	A0A1P8BKZ9	Lactococcus_phage	1.9e-45	45.7
WP_065903998.1\|31886_32399_+	hypothetical protein	NA	NA	NA	NA
WP_054759853.1\|32403_32664_+	hypothetical protein	NA	NA	NA	NA
WP_156770509.1\|32668_32815_+	hypothetical protein	NA	NA	NA	NA
WP_065904117.1\|32950_33268_+	hypothetical protein	NA	NA	NA	NA
WP_065904113.1\|33260_34094_+	phage recombination protein Bet	A8ATK8	Listeria_phage	5.2e-53	50.9
WP_065904110.1\|34029_34869_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A0P0IZH9	Lactobacillus_phage	6.4e-67	47.9
WP_065937713.1\|34880_35753_+	DnaD domain protein	A0A1L2JY26	Aeribacillus_phage	6.8e-19	38.6
WP_065904124.1\|35752_36460_+	hypothetical protein	E9LUU3	Lactobacillus_phage	7.5e-93	70.1
WP_065903756.1\|36616_37849_-\|transposase	transposase	A0A286QQE5	Streptococcus_phage	1.5e-51	35.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage